Citrus Sinensis ID: 000836
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YQ1 | 1344 | Regulatory-associated pro | yes | no | 0.971 | 0.912 | 0.786 | 0.0 | |
| Q9LZW9 | 1336 | Regulatory-associated pro | no | no | 0.950 | 0.897 | 0.721 | 0.0 | |
| Q0IQN5 | 1359 | Regulatory-associated pro | yes | no | 0.967 | 0.898 | 0.691 | 0.0 | |
| C7J8E5 | 1218 | Regulatory-associated pro | yes | no | 0.866 | 0.898 | 0.709 | 0.0 | |
| Q8N122 | 1335 | Regulatory-associated pro | yes | no | 0.872 | 0.824 | 0.431 | 0.0 | |
| Q8K4Q0 | 1335 | Regulatory-associated pro | yes | no | 0.860 | 0.813 | 0.423 | 0.0 | |
| P87141 | 1313 | WD repeat-containing prot | yes | no | 0.545 | 0.524 | 0.474 | 0.0 | |
| Q55BR7 | 1509 | Protein raptor homolog OS | yes | no | 0.355 | 0.297 | 0.576 | 1e-156 | |
| P38873 | 1557 | Target of rapamycin compl | yes | no | 0.261 | 0.211 | 0.476 | 5e-96 | |
| Q0DJA3 | 437 | Double-stranded RNA-bindi | no | no | 0.064 | 0.185 | 0.817 | 1e-33 |
| >sp|Q93YQ1|RTOR1_ARATH Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1923 bits (4982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1250 (78%), Positives = 1082/1250 (86%), Gaps = 24/1250 (1%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKV 1243
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAKV
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKV 1233
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Probable component of the plant TOR kinase pathway that recruits substrates for TOR. Modulates plant cell growth and regulates the activity of ATPK1 kinase in response to osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2 OS=Arabidopsis thaliana GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1791 bits (4638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1268 (72%), Positives = 1037/1268 (81%), Gaps = 69/1268 (5%)
Query: 1 MALGDLMASRFSQSAV--VSNHLNDD----CGSAHGD--VDLRRDSDTASSSYTNNASVT 52
MALGDLM SR SQS+V V+NHL DD SAH D V + ASSSY N
Sbjct: 1 MALGDLMVSRLSQSSVTVVTNHLYDDDDNCASSAHDDSRVSIIASPRVASSSYEN----- 55
Query: 53 TITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLC 112
+ TS+AYLPQT+VLC+LRH+ +AS P +WR K+RMKTGCVALV+C
Sbjct: 56 ---LSAATSMAYLPQTLVLCDLRHD--DASDIVQPP------RWRLKERMKTGCVALVMC 104
Query: 113 LNISVDPPDVIKISPCARMECWIDPFSM-APQKALETIGKNLSQQYERWQPRARYKVQLD 171
L+I+VDPPDVIKISPCAR+ECWIDPFSM P++ALE IG+NLS QYERW RARYKV+LD
Sbjct: 105 LHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQYERWLARARYKVELD 164
Query: 172 PTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDS 231
PT D+V+KLC +CR+YAK ERVLFHYNGHGVPKPT NGEIW++NK++TQYIPLP+S+LDS
Sbjct: 165 PTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDS 224
Query: 232 WLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPA 291
WLKTP+IYVFDCSAA +I+NAF E SG +DCILLAAC+ HETLPQS EFPA
Sbjct: 225 WLKTPTIYVFDCSAARVILNAFAE------GESSGPPKDCILLAACDVHETLPQSVEFPA 278
Query: 292 DVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDT 351
DVFTSCLTTPI +AL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDT
Sbjct: 279 DVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDT 338
Query: 352 IAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAW 411
IAWNVLP +LFQRLFRQDLLVASLFRNFLLAERIMRS NC+PISHPMLPPTHQHHMWDAW
Sbjct: 339 IAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAW 398
Query: 412 DMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 471
DMAAEICLSQLP DPN E+QPS FF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL
Sbjct: 399 DMAAEICLSQLPQFFLDPNTEFQPSSFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 458
Query: 472 SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILAL 531
SQCHR+RALVLLGRFLDMGPWAVDLALSVGI+P V+KLLQTTT ELRQILVFIWTKILAL
Sbjct: 459 SQCHRYRALVLLGRFLDMGPWAVDLALSVGIYPCVVKLLQTTTIELRQILVFIWTKILAL 518
Query: 532 DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHV 591
DKSCQVDLVKD GH YFIRFLDS +A+PEQRAMAAF+LAVIVDG++RGQE+C+EA LI V
Sbjct: 519 DKSCQVDLVKDRGHIYFIRFLDSSDAFPEQRAMAAFILAVIVDGYKRGQESCLEANLIAV 578
Query: 592 CLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP----AIYVPLLSE 647
CL HL+ + D EPLFLQWLCLCLGKLWED+ EAQ +GR A+A A + LL
Sbjct: 579 CLGHLEATQLCDPPPEPLFLQWLCLCLGKLWEDYLEAQIMGREANASENLIAGHTNLL-- 636
Query: 648 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPL 707
+VRA+AVF+LGTLLD+GFDS + GV DEE DDDE I +I II+SLL VVSDGSPL
Sbjct: 637 ---QVRAAAVFALGTLLDVGFDSGK-GV-CDEEFDDDENIVEDI-IIKSLLDVVSDGSPL 690
Query: 708 VRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGP 767
VR EVAVALARFAFGHKQHLKS+A +Y KPQ NSL SLPS+A +G+ + SS +G
Sbjct: 691 VRTEVAVALARFAFGHKQHLKSVADSYWKPQ-NSLRTSLPSMAKFHDSGTSIVASSDMGS 749
Query: 768 LTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMR 825
LTR ++ V R+GR+S+S +GLM GSPL+DDSS HSD GI++DGVSNGVV+ +
Sbjct: 750 LTRASPDSQPVAREGRISSSLQEPFSGLMQGSPLADDSSLHSDVGIIHDGVSNGVVH--Q 807
Query: 826 PKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDP 885
P+PLD+AIYSQ VLAM TLAKDPSPRIA+LGRRVLS+IGIEQ+V KP S G RPG+
Sbjct: 808 PRPLDNAIYSQSVLAMFTLAKDPSPRIASLGRRVLSVIGIEQIVAKPSKSNG---RPGEA 864
Query: 886 TTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLIN 945
+A+ TP LAGLVRSSSWFDM+ GHLPL FRTPPVSPP+ S+L G+RRVCSLE RPHL+
Sbjct: 865 ASASHTP-LAGLVRSSSWFDMHTGHLPLTFRTPPVSPPQTSYLTGLRRVCSLELRPHLLG 923
Query: 946 SPDSGLADPLLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREER 1004
SPDSGLADP+LG SG SERSLLP STIYNWSCGHFSKPLL AD EEI A+REE+
Sbjct: 924 SPDSGLADPILGVSG-----SERSLLPQSTIYNWSCGHFSKPLLGGADANEEIAAQREEK 978
Query: 1005 EKFALEHIAKCQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWN 1063
+KF+LEHIAKCQ SS+S L+N PIA WDT+FE GTKTALL PFSPIVVAADENERI++WN
Sbjct: 979 KKFSLEHIAKCQHSSISGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWN 1038
Query: 1064 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--------GNIRIWKDYDQK 1115
YEE TLLN FDN+DFPDKGIS LCLVNELD SLLLVASCN IRIWKDY K
Sbjct: 1039 YEEATLLNGFDNNDFPDKGISNLCLVNELDDSLLLVASCNVPTLSRASFAIRIWKDYATK 1098
Query: 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175
+QKLVT FSSIQG KPG N VVDWQQQSGYLY SGE SIM+WDL+KE Q+V +P
Sbjct: 1099 GRQKLVTGFSSIQGQKPGASGLNAVVDWQQQSGYLYVSGESLSIMVWDLDKE-QLVKSMP 1157
Query: 1176 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235
S CS++AL+ASQVHG QLAAGF DGSVRLYDVRTPD LVC+TRPH Q+VE+VVG+SFQ
Sbjct: 1158 FESGCSVTALSASQVHGSQLAAGFADGSVRLYDVRTPDFLVCATRPH-QRVEKVVGLSFQ 1216
Query: 1236 PGLDPAKV 1243
PGLDPAK+
Sbjct: 1217 PGLDPAKI 1224
|
Probable component of the plant TOR kinase pathway. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0IQN5|RTOR1_ORYSJ Regulatory-associated protein of TOR 1 OS=Oryza sativa subsp. japonica GN=RAPTOR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1721 bits (4458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1269 (69%), Positives = 1019/1269 (80%), Gaps = 48/1269 (3%)
Query: 1 MALGDLMASRFSQSAVV------------SNHLNDDCGSAHGDVDLRRDSDTASSSYTNN 48
MALGDLMASR S+ +NHL DD D RRD
Sbjct: 1 MALGDLMASRLVHSSSSSAAPSAALPNHHTNHLVDDHLPVENGPDPRRDVPDEEPPPPPP 60
Query: 49 ASVTTITTTTTTSLAYLPQTVVLCELRHEAFE--ASTPSGPSDSGLVSKWRPKDRMKTGC 106
V A LPQ VVLCE RHE F+ A+ +GPS SG VSKWRPKDRMKTGC
Sbjct: 61 PQV-----------ALLPQVVVLCEQRHEGFDEAAAAAAGPSTSGPVSKWRPKDRMKTGC 109
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
VALVLCLNISVDPPDVIKISPCAR ECWIDPFSMAP KALETIGK L QYERWQP+ARY
Sbjct: 110 VALVLCLNISVDPPDVIKISPCARKECWIDPFSMAPPKALETIGKTLHSQYERWQPKARY 169
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
K+QLDPT++EVKKLCNTCR++A+ ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPI
Sbjct: 170 KLQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPI 229
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQS 286
+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW +S+ + S++DCILLAACEAH+TLPQS
Sbjct: 230 TDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDWSSSSSASSSKDCILLAACEAHQTLPQS 289
Query: 287 EEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFT 346
EFPADVFT+CLTTPI MAL WFC RSLL +S++++LID+IPGRQ DR+TLLGELNWIFT
Sbjct: 290 AEFPADVFTACLTTPIKMALHWFCNRSLLRDSMEHNLIDQIPGRQNDRKTLLGELNWIFT 349
Query: 347 AVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHH 406
A+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPIS+P+LPPTHQHH
Sbjct: 350 AITDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISYPLLPPTHQHH 409
Query: 407 MWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIV 466
MWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF+EQLTAFEVWLDHGSE KKPPEQLPIV
Sbjct: 410 MWDAWDMAAEICLSKLPQLIADPNAEFQPSPFFTEQLTAFEVWLDHGSEDKKPPEQLPIV 469
Query: 467 LQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWT 526
LQVLLSQ HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT+ ELRQILVFIWT
Sbjct: 470 LQVLLSQSHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTSAMELRQILVFIWT 529
Query: 527 KILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586
KIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYPEQRAMAAFVLAVIVDGHR GQEAC A
Sbjct: 530 KILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYPEQRAMAAFVLAVIVDGHRIGQEACANA 589
Query: 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 646
GLI VCL+HLQ PNDAQTEPL LQWLCLCLGKLWEDF EAQ +G +++AP I + LLS
Sbjct: 590 GLIDVCLRHLQPENPNDAQTEPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLS 649
Query: 647 EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSP 706
EPQPEVRASAVF+LG L+DIG S + ++ DEK+RAEI+++RSLL + SDGSP
Sbjct: 650 EPQPEVRASAVFALGNLVDIGSPSLNGADDDSDD---DEKVRAEINVVRSLLQISSDGSP 706
Query: 707 LVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTG---------S 757
LVR+EVAVAL RFA GH +H+KS+AA Y KPQ+NSLL SLPSLA+I ++
Sbjct: 707 LVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQTNSLLKSLPSLANINSSNVYSPSSLIQG 766
Query: 758 GSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGI-LND 814
S ++S IGP+ RVG N A RDGR+STSSP+A +MHGSP SDDSSQHSDSGI L +
Sbjct: 767 SSGLASHIGPVLRVGSDNSATARDGRISTSSPIATNSIMHGSPQSDDSSQHSDSGILLRE 826
Query: 815 GVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVM 874
SNG +N+ R +P+D+ IYSQ + MC +AKDP PRIA++G+R LS+IG+EQV +
Sbjct: 827 NASNGGLNYSRSRPIDNGIYSQFIATMCNVAKDPYPRIASIGKRALSLIGVEQVSMRNSR 886
Query: 875 SMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRV 934
+ PG+ T+ P S G+ RSSSWFDMN G+ + FRTPPVSPP+ +L G+RRV
Sbjct: 887 LSNGGAHPGE--TSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPPQHDYLTGLRRV 944
Query: 935 CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDT 994
CS+EFRPH++NSPD GLADPLL S + +LP S IY WSCGHFS+PLLT +DD
Sbjct: 945 CSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGLYILPQSLIYRWSCGHFSRPLLTGSDDN 1003
Query: 995 EEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAAD 1054
EE ARREERE+ A++ IAKCQRSS K+ + IA WDTRFE GTK +LL PFSPIVVAAD
Sbjct: 1004 EEANARREERERIAMDCIAKCQRSSC-KMTSQIASWDTRFELGTKASLLLPFSPIVVAAD 1062
Query: 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114
ENE+I++WNY++ +N+F+NH D+G+SKL L+NELD SLLLV S +GN+RIW++Y Q
Sbjct: 1063 ENEQIRVWNYDDALPVNTFENHKLSDRGLSKLLLINELDDSLLLVGSSDGNVRIWRNYTQ 1122
Query: 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174
K QKLVTAFSS+QG++ R ++V DWQQQSGYLYASG++SSI++WDL+KEQ VN I
Sbjct: 1123 KGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQSGYLYASGDMSSILVWDLDKEQ--VNTI 1178
Query: 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234
S++D ISAL+ASQV GQ AAGF+D SVR++DVRTPD LV + RPH + E+VVGI F
Sbjct: 1179 QSTADSGISALSASQVRCGQFAAGFLDASVRIFDVRTPDRLVYTARPHAPRSEKVVGIGF 1238
Query: 1235 QPGLDPAKV 1243
QPG DP K+
Sbjct: 1239 QPGFDPYKI 1247
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|C7J8E5|RTOR2_ORYSJ Regulatory-associated protein of TOR 2 OS=Oryza sativa subsp. japonica GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1588 bits (4111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1116 (70%), Positives = 930/1116 (83%), Gaps = 22/1116 (1%)
Query: 140 MAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNG 199
MAP KALETIGK L QYERWQP+ARYK+QLDPT++EVKKLCNTCR++A+ ERVLFHYNG
Sbjct: 1 MAPPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCRKFARTERVLFHYNG 60
Query: 200 HGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW 259
HGVPKPTANGEIW+FNKSYTQYIPLPI+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW
Sbjct: 61 HGVPKPTANGEIWVFNKSYTQYIPLPITDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDW 120
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
+S+ + S++DCILLAACEAH+TLPQS EFPADVFT+CLTTPI MAL WFC RSLL +S+
Sbjct: 121 SSSSSASSSKDCILLAACEAHQTLPQSAEFPADVFTACLTTPIKMALHWFCNRSLLRDSM 180
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
+++LID+IPGRQ DR+TLLGELNWIFTA+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNF
Sbjct: 181 EHNLIDQIPGRQNDRKTLLGELNWIFTAITDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 240
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANCSPIS+P+LPPTHQHHMWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF
Sbjct: 241 LLAERIMRSANCSPISYPLLPPTHQHHMWDAWDMAAEICLSKLPQLIADPNAEFQPSPFF 300
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWLDHGSE KKPPEQLPIVLQVLLSQ HRFRALVLLGRFLDMGPWAVDLALS
Sbjct: 301 TEQLTAFEVWLDHGSEDKKPPEQLPIVLQVLLSQSHRFRALVLLGRFLDMGPWAVDLALS 360
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQT+ ELRQILVFIWTKIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYP
Sbjct: 361 VGIFPYVLKLLQTSAMELRQILVFIWTKILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYP 420
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
EQRAMAAFVLAVIVDGHR GQEAC AGLI+VCL+HLQ PNDAQTEPL LQWLCLCLG
Sbjct: 421 EQRAMAAFVLAVIVDGHRVGQEACANAGLIYVCLRHLQPENPNDAQTEPLLLQWLCLCLG 480
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDE 679
KLWEDF EAQ +G +++AP I + LLSEPQPEVRASAVF+LG L+DIG S + +
Sbjct: 481 KLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLVDIGSPSLNGADDDSD 540
Query: 680 ECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQS 739
+ DEK+RAEI+++RSLL + SDGSPLVR+EVAVAL RFA GH +H+KS+AA Y KPQ+
Sbjct: 541 D---DEKVRAEINVVRSLLQISSDGSPLVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQT 597
Query: 740 NSLLGSLPSLAHIKTTG---------SGSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPL 788
NSLL SLPSLA+I ++ S ++S IGP+ RVG N A RDGR+STSSP+
Sbjct: 598 NSLLKSLPSLANINSSNVYSPSSLIQGSSGLASHIGPVLRVGSDNSATARDGRISTSSPI 657
Query: 789 ANAGLMHGSPLSDDSSQHSDSGI-LNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKD 847
A +MHGSP SDDSSQHSDSGI L + SNG +N+ R +P+D+ IYSQ + MC +AKD
Sbjct: 658 ATNSIMHGSPQSDDSSQHSDSGILLRENASNGGLNYSRSRPIDNGIYSQFIATMCNVAKD 717
Query: 848 PSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMN 907
P PRIA++G+R LS+IG+EQV + + PG+ T+ P S G+ RSSSWFDMN
Sbjct: 718 PYPRIASIGKRALSLIGVEQVSMRNSRLSNGGAHPGE--TSVPPSSNFGMARSSSWFDMN 775
Query: 908 GGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSER 967
G+ + FRTPPVSPP+ +L G+RRVCS+EFRPH++NSPD GLADPLL S +
Sbjct: 776 SGNFSMAFRTPPVSPPQHDYLTGLRRVCSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGL 834
Query: 968 SLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPI 1027
+LP S IY WSCGHFS+PLLT +DD EE ARREERE+ A++ IAKCQRSS K+ + I
Sbjct: 835 DILPQSLIYRWSCGHFSRPLLTGSDDNEEANARREERERIAMDCIAKCQRSSC-KMTSQI 893
Query: 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087
A WDTRFE GTK +LL PFSPIVVAADENE+I++WNY++ +N+F+NH D+G+SKL
Sbjct: 894 ASWDTRFELGTKASLLLPFSPIVVAADENEQIRVWNYDDALPVNTFENHKLSDRGLSKLL 953
Query: 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147
L+NELD SLLLV S +GN+RIW++Y QK QKLVTAFSS+QG++ R ++V DWQQQS
Sbjct: 954 LINELDDSLLLVGSSDGNVRIWRNYTQKGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQS 1011
Query: 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207
GYLYASG++SSI++WDL+KE Q+VN I S++D ISAL+ASQV GQ AAGF+D SVR++
Sbjct: 1012 GYLYASGDMSSILVWDLDKE-QLVNTIQSTADSGISALSASQVRCGQFAAGFLDASVRIF 1070
Query: 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKV 1243
DVRTPD LV + RPH + E+VVGI FQPG DP K+
Sbjct: 1071 DVRTPDRLVYTARPHAPRSEKVVGIGFQPGFDPYKI 1106
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8N122|RPTOR_HUMAN Regulatory-associated protein of mTOR OS=Homo sapiens GN=RPTOR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1204 (43%), Positives = 701/1204 (58%), Gaps = 103/1204 (8%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +VSDGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLVSDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-------RVGNEAVVRDGRVSTSS 786
+ + + N +LPS A TT GS+ + P T GN V R S +
Sbjct: 685 FIEEEKNY---ALPSPA---TTEGGSLTPVRDSPCTPRLRSVSSYGNIRAVATAR-SLNK 737
Query: 787 PLANAGLMHGS----------------PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLD 830
L N L S S S ++ IL+ + + L+
Sbjct: 738 SLQNLSLTEESGGAVAFSPGNLSTSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLN 797
Query: 831 S-------AIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 883
S ++Y+Q + LA DP P ++ + +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPEVSDVAMKVLNSIAYKATVNARPQRVLDTSSLT 857
Query: 884 DPTTAAPTPSLAGLVRSSS---WFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFR 940
A+PT + ++ + L PVS S PG ++
Sbjct: 858 QSAPASPTNKGVHIHQAGGSPPASSTSSSSLTNDVAKQPVSRDLPSGRPGTTGPAGAQYT 917
Query: 941 PH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTA 990
PH P+ D +G S +S + +WS +F++P++
Sbjct: 918 PHSHQFPRTRKMFDKGPEQTADDADDAAGHKSFISATV---QTGFCDWSARYFAQPVMKI 974
Query: 991 ADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRF----EKGTKTAL-LQP 1045
++ + R+ERE L + ++ +R + + I D + G + + P
Sbjct: 975 PEEHDLESQIRKEREWRFLRN-SRVRRQAQQVIQKGITRLDDQIFLNRNPGVPSVVKFHP 1033
Query: 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105
F+P + AD++ I W++E+ L+ F N + ++ + +N D SLLL A+ +G
Sbjct: 1034 FTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDGA 1092
Query: 1106 IRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1164
IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G L +SG+V + +WD
Sbjct: 1093 IRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGLLMSSGDVRIVRIWDT 1152
Query: 1165 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP--DMLVCSTRPH 1222
++E + V IP+ +D +++L+ H + AG DGS+R+YD R + V + R H
Sbjct: 1153 DREMK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDRRMALSECRVMTYREH 1210
Query: 1223 TQQV 1226
T V
Sbjct: 1211 TAWV 1214
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Homo sapiens (taxid: 9606) |
| >sp|Q8K4Q0|RPTOR_MOUSE Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/1219 (42%), Positives = 700/1219 (57%), Gaps = 133/1219 (10%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L + PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL-------SDPHPLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +++DGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-RVGNEAVVRDGRVSTSSPLANAG 792
+ + + N LPS A T GS+ + P T R+ + + + R T++ N
Sbjct: 685 FMEEEKNY---PLPSPA---ATEGGSLTPVRDSPCTPRLRSVSSYGNIRAVTTARNLNKS 738
Query: 793 LMHGSPLSDDSSQHSDSGILNDG------------------VSNGVVNHMRPKPLDSA-- 832
L + S L+++S N +S ++ MR SA
Sbjct: 739 LQNLS-LTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALN 797
Query: 833 ---------IYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 883
+Y+Q + LA DP P ++ L +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPDVSDLAMKVLNSIAYKATVNARPQRILDTSSLT 857
Query: 884 DPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL--------------- 928
A+PT G H+ +PP S L
Sbjct: 858 QSAPASPT--------------NKGMHMHQVGGSPPASSTSSCSLTNDVAKQTVSRDLPS 903
Query: 929 --PGMRRVCSLEFRPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIY 976
PG ++ PH PD D +G S + +
Sbjct: 904 SRPGTAGPTGAQYTPHSHQFPRTRKMFDKGPDQTTDDADDAAGHKSFICASM---QTGFC 960
Query: 977 NWSCGHFSKPLLTAADDTEEILARREERE-KFALEHIAKCQ-----RSSVSKLNNPIACW 1030
+WS +F++ ++ ++ + R+ERE +F + Q + +++L++ I +
Sbjct: 961 DWSARYFAQAVMKIPEEHDLESQIRKEREWRFLRNTRVRKQAQQVIQKGITRLDDQI--F 1018
Query: 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN 1090
R PF+P + AD++ I W++E+ L+ F N + ++ + +N
Sbjct: 1019 LNRNPGVPSVVKFHPFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLN 1077
Query: 1091 ELDVSLLLVASCNGNIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149
D SLLL A+ +G IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G
Sbjct: 1078 GQDCSLLLTATDDGAIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGL 1137
Query: 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
L +SG+V + +WD ++E + V IP+ +D +++L+ H + AG DGS+R+YD
Sbjct: 1138 LMSSGDVRIVRIWDTDRETK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDR 1195
Query: 1210 RTP--DMLVCSTRPHTQQV 1226
R + V + R HT V
Sbjct: 1196 RMALSECRVMTYREHTAWV 1214
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Mus musculus (taxid: 10090) |
| >sp|P87141|MIP1_SCHPO WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/767 (47%), Positives = 474/767 (61%), Gaps = 78/767 (10%)
Query: 21 LNDDCGSAHGDVDLRRD------SDTASSSYTNNASVTTITTTTTTS------------- 61
+ND G RR ++T S YT N+++ T T S
Sbjct: 1 MNDRISEVSGSSRARRSVLSYGTTETGSDRYTENSNIATENGVDTASSMIDGIQSGFPQP 60
Query: 62 -------------LAYLPQTVVL--CELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGC 106
+ L Q + + RH + + P+++ + WR ++R+KT
Sbjct: 61 RHGFEEEYNNAEYINMLEQVFYMYYTDKRHRGVISKKNAEPTET--IHDWRMRERLKTVS 118
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
AL++CLNI VDPPDVIK +P A+ ECWIDPFS+ KALE IGKNL QQYE R RY
Sbjct: 119 AALLVCLNIGVDPPDVIKPNPAAKYECWIDPFSLPASKALEAIGKNLQQQYETLSMRTRY 178
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
+ LDP ++EVKKLC RR AK ER+LFHYNGHGVP PTA+GEIW+FNK+YTQYIP+ +
Sbjct: 179 RHYLDPAIEEVKKLCIGQRRNAKEERILFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSL 238
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHDWGASNYSG---------STRDCILL 274
DL SWL P IYV+DCSAAG I+ N F E D A + S CI L
Sbjct: 239 YDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQNPNVLAMPSHTSCIQL 298
Query: 275 AACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDR 334
AAC ETLP + + PAD+FTSCLT+PI +++RW+ ++ L+ +++ KIPGR DR
Sbjct: 299 AACGPKETLPMNPDLPADLFTSCLTSPIEISVRWYVLQNPFPNKLNLNMLLKIPGRLQDR 358
Query: 335 RTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPI 394
RT LGELNWIFTA+TDTIAWNV P LF+RLFRQDL+VA+LFRNFLLAERIM +C P
Sbjct: 359 RTPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQ 418
Query: 395 SHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA----EYQPSPFFSEQLTAFEVWL 450
S P LPPTH H MW++WD+A + CLSQLP ++ + EY+ S FFSEQLTAFEVWL
Sbjct: 419 SSPELPPTHDHPMWNSWDLAIDNCLSQLPDMLDAESKGIAYEYKHSTFFSEQLTAFEVWL 478
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
G +KPP+QLP+VLQVLLSQ HR RAL+LL +FLD+G WAVDLALS+GIFPYVLKLL
Sbjct: 479 SQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSIGIFPYVLKLL 538
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD-SMEAYP-----EQRAM 564
Q+ EL+ +LVFIW +ILA+D SCQ DL+KD G+ YF++ L+ + +P E RAM
Sbjct: 539 QSPAIELKPVLVFIWARILAVDDSCQADLLKDNGYGYFVQILNPNSSIFPSSNISEHRAM 598
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+L+V G +GQ AC+ ++ CL HL + L QW CLC+ +LWE+
Sbjct: 599 CAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP-------DSLLRQWACLCISQLWEN 651
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684
++EA+ G R +A ++ + PEVRAS + + T L GF +
Sbjct: 652 YSEAKWSGTRDNAHVKLAEIIVDSVPEVRASVLTAFTTFL--GFPE-----------KTE 698
Query: 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIA 731
E + E I + L +SD SPLVR E+ + L+ F +K+ L +A
Sbjct: 699 EVVAVETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVA 745
|
Binds to and facilitates the functioning of the meiotic regulator mei2. May also be involved in conjugation by interacting with ste11. Essential for cell growth. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q55BR7|RPTOR_DICDI Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 345/470 (73%), Gaps = 21/470 (4%)
Query: 269 RDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIP 328
RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L + ++DKIP
Sbjct: 359 RDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGITADMLDKIP 417
Query: 329 GRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRS 388
G + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+LLAERIMRS
Sbjct: 418 GNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNYLLAERIMRS 477
Query: 389 ANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEV 448
ANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF+EQLTAFEV
Sbjct: 478 ANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFFTEQLTAFEV 537
Query: 449 WLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLK 508
WL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL VGIFPYVLK
Sbjct: 538 WLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALCVGIFPYVLK 597
Query: 509 LLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFV 568
LLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S + +QR M+AFV
Sbjct: 598 LLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPADQRTMSAFV 657
Query: 569 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628
L+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+ K+WE+F EA
Sbjct: 658 LSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMAKMWENFEEA 710
Query: 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIR 688
+ + +A LL++ PEVRASAV +LG L+ G EG E ++
Sbjct: 711 KWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI--------GGAEGSE-----QRTN 757
Query: 689 AEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQ 738
E+++ +L + +D SP+VR E+ ++L+R ++ + +A ++ +
Sbjct: 758 IELNLALTLAVITADCSPMVRKELVISLSRIVSSYESNFVQVAQEIAQEE 807
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38873|KOG1_YEAST Target of rapamycin complex 1 subunit KOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KOG1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 235/367 (64%), Gaps = 37/367 (10%)
Query: 93 VSKWR-PKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMA-PQKALETIG 150
++ W+ KDR KT AL+LCLN+ VDPPDV+K PCAR+E W+DP + +KA+E IG
Sbjct: 70 ITDWKIMKDRQKTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIG 129
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
KNL QYE R RYK LDP V++VK+ CN+ RR +K +R+LFHYNGHGVPKPT +GE
Sbjct: 130 KNLQAQYETLSLRTRYKQSLDPCVEDVKRFCNSLRRTSKEDRILFHYNGHGVPKPTKSGE 189
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL------------HD 258
IW+FN+ YTQYIP+ + DL +WL P I+V+DC++A I+ F + HD
Sbjct: 190 IWVFNRGYTQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRIKDDEEGNHD 249
Query: 259 WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHES 318
A + + + +DC LA+C + E L S E PAD+F+ CLT PI +++R F +S L +S
Sbjct: 250 VAAPSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIFLMQSPLKDS 309
Query: 319 LDYSLID----------------------KIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
+ IPG +DRRT LGELNWIFTA+TDTIAW
Sbjct: 310 KYKIFFENSTSNQPFGDSKNSFKSKIPNVNIPGMLSDRRTPLGELNWIFTAITDTIAWTS 369
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPT-HQHHMWDAWDMAA 415
LP LF++LFR DL++A+LFRNFLLA+RIM NC P+S P LP + H MW +WD+A
Sbjct: 370 LPRPLFKKLFRHDLMIAALFRNFLLAKRIMPWYNCHPVSDPELPDSITTHPMWKSWDLAM 429
Query: 416 EICLSQL 422
+ L+++
Sbjct: 430 DEVLTKI 436
|
Component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. KOG1 may have a role in binding and recruiting substrates of TORC1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
Query: 97 RPKDR-MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155
+PK+ MKTGCVALVLCLNISVDPPDVIKISPC R ECWIDPFSMA KALETIGK L
Sbjct: 356 QPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHS 415
Query: 156 QYERWQPRARYKVQLDPTVDEV 177
QYERWQP+ARYK+QLDPT++EV
Sbjct: 416 QYERWQPKARYKLQLDPTLEEV 437
|
Binds double-stranded RNA. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | ||||||
| 359481183 | 1363 | PREDICTED: regulatory-associated protein | 0.974 | 0.902 | 0.840 | 0.0 | |
| 224140567 | 1366 | predicted protein [Populus trichocarpa] | 0.976 | 0.901 | 0.824 | 0.0 | |
| 359481185 | 1370 | PREDICTED: regulatory-associated protein | 0.973 | 0.897 | 0.827 | 0.0 | |
| 224091088 | 1377 | predicted protein [Populus trichocarpa] | 0.977 | 0.896 | 0.828 | 0.0 | |
| 449464424 | 1362 | PREDICTED: regulatory-associated protein | 0.973 | 0.902 | 0.828 | 0.0 | |
| 356530199 | 1373 | PREDICTED: regulatory-associated protein | 0.965 | 0.887 | 0.804 | 0.0 | |
| 356566757 | 1365 | PREDICTED: regulatory-associated protein | 0.965 | 0.893 | 0.803 | 0.0 | |
| 357506523 | 1430 | Regulatory-associated protein of mTOR [M | 0.967 | 0.853 | 0.744 | 0.0 | |
| 18398267 | 1344 | regulatory associated protein of mTOR [A | 0.971 | 0.912 | 0.786 | 0.0 | |
| 297833636 | 1344 | RAPTOR1B [Arabidopsis lyrata subsp. lyra | 0.970 | 0.911 | 0.787 | 0.0 |
| >gi|359481183|ref|XP_003632587.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 1 [Vitis vinifera] gi|297735579|emb|CBI18073.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2121 bits (5495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1265 (84%), Positives = 1129/1265 (89%), Gaps = 35/1265 (2%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVP---LLSEPQPE 651
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APAIY P LLSEPQPE
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAIYAPLLSLLSEPQPE 650
Query: 652 VRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAE 711
VRASAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAE
Sbjct: 651 VRASAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAE 710
Query: 712 VAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSI 760
VAVAL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSI
Sbjct: 711 VAVALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSI 769
Query: 761 VSSQIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSN 818
V +GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSN
Sbjct: 770 VPP-VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSN 828
Query: 819 GVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGN 878
G+VNH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G
Sbjct: 829 GIVNHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGT 888
Query: 879 TSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLE 938
+ RP +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLE
Sbjct: 889 SVRPAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLE 948
Query: 939 FRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL 998
FRPH +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEIL
Sbjct: 949 FRPHQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEIL 1008
Query: 999 ARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1058
ARREEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENER
Sbjct: 1009 ARREEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENER 1068
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
I+IWNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASC+GN+RIWKDY + +Q
Sbjct: 1069 IRIWNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCDGNVRIWKDYTLRGQQ 1128
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
KLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+V IPS S
Sbjct: 1129 KLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QLVYSIPSLS 1187
Query: 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238
D SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVVGI FQPGL
Sbjct: 1188 DSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVVGIGFQPGL 1247
Query: 1239 DPAKV 1243
DPAK+
Sbjct: 1248 DPAKI 1252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140567|ref|XP_002323654.1| predicted protein [Populus trichocarpa] gi|222868284|gb|EEF05415.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2106 bits (5456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1044/1266 (82%), Positives = 1120/1266 (88%), Gaps = 34/1266 (2%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGDVDLRRDSDTASSS-YTNNASVTTITT 56
MALGDL ASR S A++SNH + D RDSD AS+S Y + T T
Sbjct: 1 MALGDLTASRLSSQSSVALISNH--------YDDFPSNRDSDIASTSNYGGGNATTGSTA 52
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
TTTS+AYLPQ+ VL ELRHEAFEAS P+GPSDSG VSKWRPKDRMKTG VALVLCLNIS
Sbjct: 53 ATTTSMAYLPQSAVLSELRHEAFEASVPTGPSDSGPVSKWRPKDRMKTGYVALVLCLNIS 112
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCARMECWIDPFSMAPQKALETIGK+LS QYERWQP+ARYK+QLDPTVDE
Sbjct: 113 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSLSIQYERWQPKARYKIQLDPTVDE 172
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
VKKLCNTCR++AK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL+TP
Sbjct: 173 VKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLRTP 232
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAAGMIVNAF+ELHDW AS +GS +CILLAACEAHETLPQS+EFPADVFTS
Sbjct: 233 SIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCILLAACEAHETLPQSDEFPADVFTS 292
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 293 CLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 352
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 353 LPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLPS+V DPN+E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ HR
Sbjct: 413 ICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQSHR 472
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ
Sbjct: 473 FRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
VDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL+HL
Sbjct: 533 VDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLRHL 592
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+GS+P DAQTEPLFLQWLCLCLGKLWEDFTEAQ +G +ADAPAIY PLL PQPEVRASA
Sbjct: 593 RGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGLQADAPAIYAPLLLVPQPEVRASA 652
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
F+L TLLD+G D CRDGV GD+ECDDDEK+RAE+SIIRSLL+VVSDGSPLVRAEVAVAL
Sbjct: 653 AFALATLLDVGGDVCRDGVHGDDECDDDEKVRAEVSIIRSLLSVVSDGSPLVRAEVAVAL 712
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG-----------SIVSSQI 765
ARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSL HIK TGSG SIVSSQI
Sbjct: 713 ARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIKATGSGYINPNQHVPHASIVSSQI 772
Query: 766 GPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNH 823
GPLTRVG N +VVRDGRVSTSSPL AG+MHGSPLSDDSSQHS+SGILN VSNG VNH
Sbjct: 773 GPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLSDDSSQHSNSGILNGIVSNGAVNH 832
Query: 824 MRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTS--R 881
RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGR VLSIIGIEQVVTK V S G++ R
Sbjct: 833 SRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVLSIIGIEQVVTKSVNSAGSSGRPR 892
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
PGDP T++P PS+AG+ RSSSWFDMN GHLP FRTPPVSPPR S+L GMRRVCSL+FRP
Sbjct: 893 PGDPKTSSPYPSVAGMTRSSSWFDMNAGHLP--FRTPPVSPPRPSYLTGMRRVCSLDFRP 950
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
HL+N PDSGLADPLLGS S +ERSLLP STIY WSCGHFSKPLLT DDTEEIL RR
Sbjct: 951 HLMNFPDSGLADPLLGSVSSSGGTERSLLPQSTIYKWSCGHFSKPLLTVPDDTEEILVRR 1010
Query: 1002 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERI-- 1059
EEREK+ALEHIA CQ SS S L N IA DT+FE GTKTALLQPFSPIVVAADENERI
Sbjct: 1011 EEREKYALEHIATCQHSSGSNLKNRIANLDTKFETGTKTALLQPFSPIVVAADENERIRQ 1070
Query: 1060 --KIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117
++WNYEE LLN FDNHDFPDKGISKLCLVNELD SLLLVASC+GNIRIWKDY K
Sbjct: 1071 ASRVWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKDYTVYGK 1130
Query: 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177
QKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+++ IPSS
Sbjct: 1131 QKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLIHSIPSS 1189
Query: 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237
SDCS+SA++AS+VHGGQ AAGFVDGSV+LYDVR +MLVC++RPHT+ V RVVGI FQPG
Sbjct: 1190 SDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRPHTENVVRVVGIGFQPG 1249
Query: 1238 LDPAKV 1243
LDP K+
Sbjct: 1250 LDPGKI 1255
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481185|ref|XP_003632588.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2092 bits (5421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1273 (82%), Positives = 1122/1273 (88%), Gaps = 44/1273 (3%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APA ++ + +VRA
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAFFIS-NNAILFQVRA 649
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAV 714
SAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAEVAV
Sbjct: 650 SAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAEVAV 709
Query: 715 ALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVSS 763
AL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSIV
Sbjct: 710 ALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSIVPP 768
Query: 764 QIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVV 821
+GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSNG+V
Sbjct: 769 -VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSNGIV 827
Query: 822 NHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSR 881
NH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G + R
Sbjct: 828 NHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGTSVR 887
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
P +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLEFRP
Sbjct: 888 PAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLEFRP 947
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
H +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEILARR
Sbjct: 948 HQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEILARR 1007
Query: 1002 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKI 1061
EEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENERI+I
Sbjct: 1008 EEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENERIRI 1067
Query: 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----------GNIRIWK 1110
WNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASCN GN+RIWK
Sbjct: 1068 WNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCNFFLLSLHYVGDGNVRIWK 1127
Query: 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170
DY + +QKLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+
Sbjct: 1128 DYTLRGQQKLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QL 1186
Query: 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
V IPS SD SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVV
Sbjct: 1187 VYSIPSLSDSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVV 1246
Query: 1231 GISFQPGLDPAKV 1243
GI FQPGLDPAK+
Sbjct: 1247 GIGFQPGLDPAKI 1259
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091088|ref|XP_002309174.1| predicted protein [Populus trichocarpa] gi|222855150|gb|EEE92697.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2088 bits (5409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1056/1275 (82%), Positives = 1127/1275 (88%), Gaps = 41/1275 (3%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGD--VDL--------------RRDSDTA 41
MALGDLMASRFS A VSNH D S+H D +D+ R +
Sbjct: 1 MALGDLMASRFSSQSPVAFVSNHY-DHYPSSHEDDAIDVARRDDNNNSNNNRDRDSDTAS 59
Query: 42 SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDR 101
+S+Y + + T TTTTS AYLPQTVVLCELRHEAFEAS P+GPSDSGLVSKWRPKDR
Sbjct: 60 TSNYGGGNATASTTATTTTSTAYLPQTVVLCELRHEAFEASVPTGPSDSGLVSKWRPKDR 119
Query: 102 MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQ 161
MKTG VALVLCLNISVDPPDVIKISPCARMECW DP SMAPQKALETIGKNLS QYERWQ
Sbjct: 120 MKTGYVALVLCLNISVDPPDVIKISPCARMECWTDPLSMAPQKALETIGKNLSIQYERWQ 179
Query: 162 PRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 221
P+ARYKVQLDPTVDEVKKLCNTCR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQY
Sbjct: 180 PKARYKVQLDPTVDEVKKLCNTCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 239
Query: 222 IPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHE 281
IPLP+SDLDSWL+TPSIYVFDCSAAGMIVNAF+ELHDW AS +GSTRDCILLAACEAHE
Sbjct: 240 IPLPVSDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWNASGSAGSTRDCILLAACEAHE 299
Query: 282 TLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGEL 341
TLPQS+EFPADVFTSCLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGEL
Sbjct: 300 TLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGEL 359
Query: 342 NWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 401
NWIFTAVTDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP
Sbjct: 360 NWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 419
Query: 402 THQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPE 461
THQHHMWDAWDMAAEICLSQLPSLV DPNAE+QPSPFF+EQLTAFEVWLDHG EHKKPPE
Sbjct: 420 THQHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLTAFEVWLDHGFEHKKPPE 479
Query: 462 QLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQIL 521
QLPIVLQVLLSQCHRFRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQIL
Sbjct: 480 QLPIVLQVLLSQCHRFRALVLLGRFLDMGRWAVDLALSVGIFPYVLKLLQTTTPELRQIL 539
Query: 522 VFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581
VFIWTKILALDKSCQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQE
Sbjct: 540 VFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQE 599
Query: 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIY 641
ACI+AGLIHVCLKHLQGS+PND QTEPLFLQWLCLCLGKLWEDFTEAQ +G +AD+PAIY
Sbjct: 600 ACIKAGLIHVCLKHLQGSVPNDTQTEPLFLQWLCLCLGKLWEDFTEAQILGLQADSPAIY 659
Query: 642 VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVV 701
PLL EPQPEVRASA F+L TLLD+G D CRDG GD+E DDDEKIRAEISI+RSLL+ V
Sbjct: 660 APLLLEPQPEVRASAAFALATLLDVGGDVCRDGATGDDEFDDDEKIRAEISIVRSLLSAV 719
Query: 702 SDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG--- 758
SDGSPLVRAEVAVALARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSLAHIK TGSG
Sbjct: 720 SDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLSSLPSLAHIKATGSGHAN 779
Query: 759 --------SIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSD 808
SIVSSQ GPLTRVG++ +VVRDGR STSSP AG+MHGSPLSDDSS HSD
Sbjct: 780 PNQYVPHASIVSSQFGPLTRVGSDSPSVVRDGRASTSSP-TTAGIMHGSPLSDDSSLHSD 838
Query: 809 SGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQV 868
SGILND VSNG V H RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGRRVLSIIGIEQV
Sbjct: 839 SGILNDIVSNGEVLHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRRVLSIIGIEQV 898
Query: 869 VTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL 928
VTK V S G++ P T+ +PSLAGL RSSSWFDM+ GH+PL FRTPPVSPPR S+L
Sbjct: 899 VTKSVNSTGSSG----PKTS--SPSLAGLARSSSWFDMHAGHIPLTFRTPPVSPPRSSYL 952
Query: 929 PGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLL 988
GMRRVCSLEFRPHL+NSPDSGLADPLL S S +ERSLLP STIYNWSCGHFSKPLL
Sbjct: 953 TGMRRVCSLEFRPHLMNSPDSGLADPLLASVGSSGGTERSLLPQSTIYNWSCGHFSKPLL 1012
Query: 989 TAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSP 1048
T DDTEEIL RREEREKFALEHIA CQ SSVS LNN IA WDT+FE GTKTALLQPFSP
Sbjct: 1013 TTPDDTEEILVRREEREKFALEHIAMCQHSSVSNLNNRIASWDTKFETGTKTALLQPFSP 1072
Query: 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108
IVVAADENERI++WNYEE TLLN FDNHDFPD+G+SKLCLVNELD SLLLVASC+GNIRI
Sbjct: 1073 IVVAADENERIRVWNYEEATLLNGFDNHDFPDRGVSKLCLVNELDDSLLLVASCDGNIRI 1132
Query: 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168
WKDY K KQKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE
Sbjct: 1133 WKDYTVKGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE- 1191
Query: 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228
Q+++ IPSSSDCS+SA++ASQVHGGQ AGFVDGSV+LYDVRTP+MLVC+TRPHT+ VE+
Sbjct: 1192 QLIHSIPSSSDCSVSAMSASQVHGGQFTAGFVDGSVKLYDVRTPEMLVCATRPHTENVEK 1251
Query: 1229 VVGISFQPGLDPAKV 1243
VVGI F PGLDP K+
Sbjct: 1252 VVGIGFHPGLDPGKI 1266
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464424|ref|XP_004149929.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] gi|449517611|ref|XP_004165839.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2059 bits (5334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1265 (82%), Positives = 1118/1265 (88%), Gaps = 36/1265 (2%)
Query: 1 MALGDLMASRFSQS--AVVSNHLNDDCGSAHGDVD-----LRRDSDTASSSYTNNASVTT 53
MALGDLMASR SQS AVVSNHL DDC S++ D D LRRDS+ ASSSY
Sbjct: 1 MALGDLMASRISQSSLAVVSNHL-DDCSSSNHDDDGDLISLRRDSEVASSSYA------N 53
Query: 54 ITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCL 113
TT T++ YLPQT+VLCELRH+AFEA P+GPSD+GLVSKWRPKDRMKTGCVALVLCL
Sbjct: 54 AAVTTATTMVYLPQTIVLCELRHDAFEACLPAGPSDTGLVSKWRPKDRMKTGCVALVLCL 113
Query: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPT 173
NISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYERWQPRARYKVQLDPT
Sbjct: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERWQPRARYKVQLDPT 173
Query: 174 VDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL 233
V+EVKKLC+TCR+YAK ERVLFHYNGHGVPKPTA+GEIWLFNKSYTQYIPLPISDLDSWL
Sbjct: 174 VEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWL 233
Query: 234 KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADV 293
KTPSIYVFDCSAAGMIVNAF ELHD SGSTRDCILLAACE+HETLPQ EFPADV
Sbjct: 234 KTPSIYVFDCSAAGMIVNAFTELHD-----PSGSTRDCILLAACESHETLPQRAEFPADV 288
Query: 294 FTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIA 353
FTSCLTTPI MALRWFCKRSLL ESLD SLIDKIPGRQTDR+TLLGELNWIFTAVTDTIA
Sbjct: 289 FTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIA 348
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM
Sbjct: 349 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 408
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
AAEICLSQLP+LV DPN E+QPSPFF+EQLTAFEVWLDHGSE+KKPPEQLPIVLQVLLSQ
Sbjct: 409 AAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQ 468
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 533
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK
Sbjct: 469 GHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 528
Query: 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 593
SCQVDLVKDGGH YFIRFLDS+EA+PEQRAMAAFVLAVIVDGHRRGQEACIEA LIHVCL
Sbjct: 529 SCQVDLVKDGGHTYFIRFLDSLEAFPEQRAMAAFVLAVIVDGHRRGQEACIEANLIHVCL 588
Query: 594 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 653
KHLQ S PND QTEPLFLQWLCLCLGKLWED+ +AQ IG +ADAPA++ LL+EPQPEVR
Sbjct: 589 KHLQSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVFSSLLAEPQPEVR 648
Query: 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 713
ASA+F+LGTLLD+G DS RDGV D+ DDDEKIRAE SI+ SLL+VVSDGSPLVRAEVA
Sbjct: 649 ASAIFALGTLLDVGNDSSRDGVVDDDC-DDDEKIRAETSIVGSLLSVVSDGSPLVRAEVA 707
Query: 714 VALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVS 762
VALARFAFGH +HLKSIAAAY KP NSLL SLPSLAHI+++G+ GSIVS
Sbjct: 708 VALARFAFGHNKHLKSIAAAYWKPHCNSLLSSLPSLAHIRSSGNAYTNSNQHMPHGSIVS 767
Query: 763 SQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILN-DGVSNG 819
SQIGPL R GNE +VRDGRVSTSSPLAN G+MHGSPLSDDSSQHSDSG+L+ D VSNG
Sbjct: 768 SQIGPLLRFGNENSTLVRDGRVSTSSPLANTGMMHGSPLSDDSSQHSDSGVLHEDVVSNG 827
Query: 820 VVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNT 879
VNH RPKPL++A+YSQCVL MC LA DPSPRIA+LGRRVLSIIGIEQVVTKPV + +
Sbjct: 828 TVNHSRPKPLNNALYSQCVLTMCALANDPSPRIASLGRRVLSIIGIEQVVTKPVKASSSG 887
Query: 880 SRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 939
+P D T ++ PS AGL RSSSWFDMNGGHLPL FRTPPVSPPR S+L GMRRVCSLEF
Sbjct: 888 LKPTDGTASSQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEF 947
Query: 940 RPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILA 999
RP L+NSPDSGLADPL GSG S SERS LP STIYNWSCGHFSKPLLT ADD EEI
Sbjct: 948 RPQLMNSPDSGLADPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTVADDGEEIFT 1007
Query: 1000 RREEREKFALEHIAKCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1058
RREEREKFALE IAKCQ S VSKL NNPIA WDT+FE GTKT LLQPFSPIVVAADENER
Sbjct: 1008 RREEREKFALERIAKCQHSPVSKLNNNPIASWDTKFEMGTKTLLLQPFSPIVVAADENER 1067
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
I++WNYEE LLNSFDNHDFPDKGISKLCLVNELD SLLL ASC+GNIRIWKDY K KQ
Sbjct: 1068 IRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGNIRIWKDYTLKGKQ 1127
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
KLVTAFS+IQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+V IPSSS
Sbjct: 1128 KLVTAFSAIQGHKPGVRSINAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLVKSIPSSS 1186
Query: 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238
DCSISAL+ASQVHGGQLAAGF DGSV+LYD R P+MLVC+ RPH Q+VE+VVGI FQPGL
Sbjct: 1187 DCSISALSASQVHGGQLAAGFFDGSVKLYDARIPEMLVCTMRPHVQKVEKVVGIGFQPGL 1246
Query: 1239 DPAKV 1243
D +K+
Sbjct: 1247 DSSKI 1251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530199|ref|XP_003533671.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2038 bits (5279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1286 (80%), Positives = 1113/1286 (86%), Gaps = 67/1286 (5%)
Query: 1 MALGDLMASRFSQSAVV-----SNHLND------------------DCGSAHGDVDL--R 35
MALGDLMASRFSQS V+ NHL+D + S++ D D R
Sbjct: 1 MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHR 60
Query: 36 RDSDTA-----SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDS 90
RDS+ A S +Y NA+ TS+AYLP TVVLCELRH+AFEA+ P+GPSDS
Sbjct: 61 RDSEAAIAIISSGNYAGNAA---------TSMAYLPHTVVLCELRHDAFEAAVPAGPSDS 111
Query: 91 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIG 150
GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IG
Sbjct: 112 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIG 171
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
K LS QYERWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGE
Sbjct: 172 KTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGE 231
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRD 270
IW+FNKSYTQYIPLPI++LDSWLKTPSIYVFDCSAAGMIVN+FIELH+W ASN S S RD
Sbjct: 232 IWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRD 291
Query: 271 CILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGR 330
CILLAACEAHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGR
Sbjct: 292 CILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGR 351
Query: 331 QTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 390
DR+TLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN
Sbjct: 352 PNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 411
Query: 391 CSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWL 450
CSP+SHPMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWL
Sbjct: 412 CSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWL 471
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL
Sbjct: 472 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 531
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLA 570
QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLA
Sbjct: 532 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLA 591
Query: 571 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQT 630
VIVDGHRRGQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQT
Sbjct: 592 VIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQT 651
Query: 631 IGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE 690
IG + DA I+ PLLSEPQPEVRASAVF+LGTLLD+GFDSCR V GDEECDDD+K RAE
Sbjct: 652 IGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCR-SVGGDEECDDDDKFRAE 710
Query: 691 ISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLA 750
+SI++S+L V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL
Sbjct: 711 VSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLT 770
Query: 751 HIKTTGS-----------GSIVSSQIGPLTRVGNEA--VVRDGRVSTSSPLANAGLMHGS 797
+IK + GSIVS QIGP+ RVGN+ VVRDGRVS+SSPLA +G+MHGS
Sbjct: 771 NIKGSVGGYAKQNQHMPHGSIVSPQIGPI-RVGNDNSPVVRDGRVSSSSPLAGSGIMHGS 829
Query: 798 PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGR 857
PLSDDSS HSDSGILNDG SNGV NH PKP D+A+YSQCVLAMCTLAKDPSPRIA LGR
Sbjct: 830 PLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGR 889
Query: 858 RVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRT 917
RVLSIIGIEQVV KP+ S G + +TA+P L RSSSWFDMNGGHLPL FRT
Sbjct: 890 RVLSIIGIEQVVAKPLKSSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRT 940
Query: 918 PPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYN 977
PPVSPPR S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+
Sbjct: 941 PPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYS 1000
Query: 978 WSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKG 1037
WSCGHFSKPLLTAADD+EE+ ARREEREKFALEHIAKCQ S+VS+L NPIA WD KG
Sbjct: 1001 WSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDI---KG 1057
Query: 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1097
T+TALLQPFSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLL
Sbjct: 1058 TQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLL 1117
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
L AS +GNIRIWKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+S
Sbjct: 1118 LAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEIS 1177
Query: 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1217
SIMLWD++KE Q+VN SSSDCS+SAL ASQVHGGQ AGF+DGSVRLYDVRTPDMLVC
Sbjct: 1178 SIMLWDVDKE-QLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVC 1236
Query: 1218 STRPHTQQVERVVGISFQPGLDPAKV 1243
RPHTQ+VE+VVGI FQPGLD K+
Sbjct: 1237 GLRPHTQRVEKVVGIGFQPGLDQGKI 1262
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566757|ref|XP_003551595.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2012 bits (5212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1027/1278 (80%), Positives = 1102/1278 (86%), Gaps = 59/1278 (4%)
Query: 1 MALGDLMASRFSQSAV-----VSNHLNDDCGSA----------HGDVDL--RRDSDTA-- 41
MALGDLMAS SQS V + +HL+D SA + D D RRDS+ A
Sbjct: 1 MALGDLMASHLSQSTVLVVPSIHSHLDDSTTSAAVAAVNNSSSNDDADFAHRRDSEAAIS 60
Query: 42 ---SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRP 98
S +Y NA+ TS+AYLP TV LCELRH+AFEA+ P+GPSDSGLVSKWRP
Sbjct: 61 SSSSGNYAGNAA---------TSMAYLPHTVFLCELRHDAFEAAVPAGPSDSGLVSKWRP 111
Query: 99 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYE 158
KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYE
Sbjct: 112 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYE 171
Query: 159 RWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSY 218
RWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSY
Sbjct: 172 RWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSY 231
Query: 219 TQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACE 278
TQYIPLPIS+LDSWLKTPSIYV DCSAAGMIVN FIELH+W SN S S RDCILLAACE
Sbjct: 232 TQYIPLPISELDSWLKTPSIYVIDCSAAGMIVNFFIELHEWSPSNSSVSQRDCILLAACE 291
Query: 279 AHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLL 338
AHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESL SLIDKIPGR DR+TLL
Sbjct: 292 AHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLVNSLIDKIPGRPNDRKTLL 351
Query: 339 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPM 398
GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSP+SHPM
Sbjct: 352 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPM 411
Query: 399 LPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKK 458
LPPTHQHHMWDAWDMAAE+CLSQLPSLV DPN+E+Q S FF+EQLTAFEVWLDHGSEHKK
Sbjct: 412 LPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNSEFQRSTFFTEQLTAFEVWLDHGSEHKK 471
Query: 459 PPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518
PPEQLPIVLQVL SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR
Sbjct: 472 PPEQLPIVLQVLHSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 531
Query: 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578
QILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLAVIVDGHRR
Sbjct: 532 QILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRR 591
Query: 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638
GQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQTIG + DA
Sbjct: 592 GQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDAT 651
Query: 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698
I+ PLLSEPQPEVRASAVF+LGT+LD+GFDSCR V GDEECDDD+K RAE+SI++S+L
Sbjct: 652 TIFAPLLSEPQPEVRASAVFALGTILDVGFDSCR-SVGGDEECDDDDKFRAEVSIVKSML 710
Query: 699 TVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS- 757
V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSLA+IK +
Sbjct: 711 GVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLANIKGSVGG 770
Query: 758 ----------GSIVSSQIGPLTRVGNEA--VVRDGRVSTSSPLANAGLMHGSPLSDDSSQ 805
GSIVS QIGP+ RVGN+ V+RDGRVS+SSPLA +G+MHGSPLSDDSS
Sbjct: 771 YAKQNQHMPYGSIVSPQIGPI-RVGNDNSPVIRDGRVSSSSPLAGSGIMHGSPLSDDSSH 829
Query: 806 HSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGI 865
HSDSGILNDG SNGVVNH PKPLD+A+YSQCVLAMCTLAKDPSPRIA LGRRVLSIIGI
Sbjct: 830 HSDSGILNDGFSNGVVNHTGPKPLDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGI 889
Query: 866 EQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQ 925
EQVV KP+ G + +TA+P L RSSSWFDMNGGHLPL FRTPPVSPPR
Sbjct: 890 EQVVAKPLKFSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRTPPVSPPRP 940
Query: 926 SFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSK 985
S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+WSCGHFSK
Sbjct: 941 SYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSK 1000
Query: 986 PLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQP 1045
PLLTAADD+EE ARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+TALLQP
Sbjct: 1001 PLLTAADDSEEASARREEREKFALEHIGKCQHSAVSRLINPIAKWDI---KGTQTALLQP 1057
Query: 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105
FSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS +GN
Sbjct: 1058 FSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASSDGN 1117
Query: 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1165
IRIWKDY K KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+SSIMLWD++
Sbjct: 1118 IRIWKDYTLKGKQKLVTAFSSIHGHKPGVRSLNAVVDWQQQCGYLYASGEISSIMLWDVD 1177
Query: 1166 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225
KE Q+VN SSSDCS+S L ASQVHGGQ AAGFVDGSVRLYDVRTPDMLVC RPHTQ+
Sbjct: 1178 KE-QLVNSKSSSSDCSVSVLAASQVHGGQFAAGFVDGSVRLYDVRTPDMLVCGLRPHTQR 1236
Query: 1226 VERVVGISFQPGLDPAKV 1243
VE+VVGI FQPGLD K+
Sbjct: 1237 VEKVVGIGFQPGLDQGKI 1254
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506523|ref|XP_003623550.1| Regulatory-associated protein of mTOR [Medicago truncatula] gi|355498565|gb|AES79768.1| Regulatory-associated protein of mTOR [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1978 bits (5125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 999/1341 (74%), Positives = 1090/1341 (81%), Gaps = 120/1341 (8%)
Query: 1 MALGDLMASRFSQSAV--VSNH----------------------LNDDCGSAHGDVDLRR 36
MALGDLMASRFSQS V V NH LNDD + V RR
Sbjct: 1 MALGDLMASRFSQSTVLIVPNHHRDDSTSTTAFSASASSASAAALNDDGSDFNSSVPNRR 60
Query: 37 DSDTASSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKW 96
DS+ ++S +S + T++ YLPQT ELRH+AFE P+GPSDSGLVSKW
Sbjct: 61 DSEFGAAS----SSSAGVYGNAATTMVYLPQTSFFNELRHDAFELELPTGPSDSGLVSKW 116
Query: 97 RPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQ 156
RPKDRMKTGCVALVLCLNI+VDPPDVIKISPCARMECWIDPFSMAPQKALE IGK+L+ Q
Sbjct: 117 RPKDRMKTGCVALVLCLNINVDPPDVIKISPCARMECWIDPFSMAPQKALELIGKSLTSQ 176
Query: 157 YERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK 216
YERWQP+ARYK QLDPT+DEVKKLC TCRRYAK ERVLFHYNGHGVPKPT NGE+W+FNK
Sbjct: 177 YERWQPKARYKCQLDPTLDEVKKLCTTCRRYAKSERVLFHYNGHGVPKPTHNGELWVFNK 236
Query: 217 SYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAA 276
SYTQYIPLP++DLDSWLKTPSIYVFDCSAAG +VNAFI+LH+W ASN GS RDCI+LAA
Sbjct: 237 SYTQYIPLPLNDLDSWLKTPSIYVFDCSAAGKVVNAFIQLHEWNASNSDGSPRDCIMLAA 296
Query: 277 CEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRT 336
CEAHETLPQS EFPADVFT+CLTTPI MALRWF RSLL +S DY LIDKIPGR DR+T
Sbjct: 297 CEAHETLPQSVEFPADVFTACLTTPIKMALRWFSTRSLLRDSFDYLLIDKIPGRPNDRKT 356
Query: 337 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISH 396
LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANC+P+SH
Sbjct: 357 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCTPVSH 416
Query: 397 PMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEH 456
PMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWLDHGSEH
Sbjct: 417 PMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEH 476
Query: 457 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-------------------- 496
KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL
Sbjct: 477 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLVISITIRQIFVQFLSIFSKT 536
Query: 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS---------------------- 534
ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 537 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSLLKYMNMLFFPSDLVQDKVRKV 596
Query: 535 -------------------CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDG 575
CQVDLVKDGGH YF++FLDS EAYPEQRAMAAFVLAVIVDG
Sbjct: 597 KDREYKKREINITGQYEVSCQVDLVKDGGHIYFMKFLDSSEAYPEQRAMAAFVLAVIVDG 656
Query: 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 635
HRRGQEACIEAGL HVCLKHL+ S PND+QTEPLFLQWLCLCLGKLWE+F E + IG +
Sbjct: 657 HRRGQEACIEAGLSHVCLKHLESSSPNDSQTEPLFLQWLCLCLGKLWEEFPEGKIIGLQG 716
Query: 636 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695
A +I PLLSEPQPEVRASAVF+LGTL+D+GFDSCR GDEECDDD+K RAE+SI+R
Sbjct: 717 HATSILAPLLSEPQPEVRASAVFALGTLVDVGFDSCRS--VGDEECDDDDKFRAEVSIVR 774
Query: 696 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTT 755
SLL+V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL +IK T
Sbjct: 775 SLLSVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQTNSLINSLPSLTNIKDT 834
Query: 756 GS-----------GSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDD 802
G GSIVS QIGPL RVG N V+RDGRVS+SSPLA++G+MHGSPLSD+
Sbjct: 835 GGGYSKQNQHMAHGSIVSPQIGPL-RVGSDNSKVIRDGRVSSSSPLASSGIMHGSPLSDN 893
Query: 803 SSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSI 862
SS HSDSGILNDG SNGVVN PKPLD+A+YSQCVLAMCTLAKDPSPR+ LGRRVLSI
Sbjct: 894 SSHHSDSGILNDGFSNGVVNSFGPKPLDNALYSQCVLAMCTLAKDPSPRVGNLGRRVLSI 953
Query: 863 IGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSP 922
IGIEQVV KP+ +P T++ P A L RSSSWFDMNGGHLPL FRTPPVSP
Sbjct: 954 IGIEQVVAKPL-------KPSGVRTSSVVPVSASLARSSSWFDMNGGHLPLTFRTPPVSP 1006
Query: 923 PRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGH 982
PR S++ GMRRVCSLEFRPHL+ SPD+GLADPLLGSG +RSLLP S+IYNWSCGH
Sbjct: 1007 PRPSYIAGMRRVCSLEFRPHLMTSPDTGLADPLLGSG----TFDRSLLPQSSIYNWSCGH 1062
Query: 983 FSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTAL 1042
FSK LLTAADD+EE+LARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+T L
Sbjct: 1063 FSKSLLTAADDSEEVLARREEREKFALEHIVKCQHSAVSRLTNPIAKWDI---KGTQTLL 1119
Query: 1043 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
LQPFSPIVVAADENERI++WN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS
Sbjct: 1120 LQPFSPIVVAADENERIRVWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASS 1179
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162
+GN+R+WKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE S IM+W
Sbjct: 1180 DGNVRVWKDYSLRGKQKLVTAFSSIHGHKPGVRSPNAVVDWQQQCGYLYASGETSLIMMW 1239
Query: 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222
DL+KE Q+VN IPSSS+CS+SAL ASQVHGGQ AAGFVDGSVRLYD RTP+MLVC RPH
Sbjct: 1240 DLDKE-QLVNTIPSSSECSVSALAASQVHGGQFAAGFVDGSVRLYDARTPEMLVCGLRPH 1298
Query: 1223 TQQVERVVGISFQPGLDPAKV 1243
TQ+VE+V+GI FQPGLDP K+
Sbjct: 1299 TQRVEKVMGIGFQPGLDPGKL 1319
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398267|ref|NP_566335.1| regulatory associated protein of mTOR [Arabidopsis thaliana] gi|75331762|sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gi|16648937|gb|AAL24320.1| Unknown protein [Arabidopsis thaliana] gi|31711792|gb|AAP68252.1| At3g08850 [Arabidopsis thaliana] gi|56266687|gb|AAV84960.1| raptor1B [Arabidopsis thaliana] gi|332641166|gb|AEE74687.1| regulatory associated protein of mTOR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1923 bits (4982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1250 (78%), Positives = 1082/1250 (86%), Gaps = 24/1250 (1%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKV 1243
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAKV
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKV 1233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833636|ref|XP_002884700.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] gi|297330540|gb|EFH60959.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1918 bits (4969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1251 (78%), Positives = 1082/1251 (86%), Gaps = 26/1251 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIALVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHD G+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDMGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLS LP LV DP E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSHLPQLVLDPTVEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL++SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLSSPDSGLADP 949
Query: 955 LLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIA 1013
LLG SG SERSLLP STIY+WSCGHFSKPLL AD ++EI A+REE+EKFALEHIA
Sbjct: 950 LLGVSG-----SERSLLPLSTIYSWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIA 1004
Query: 1014 KCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS 1072
KCQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN
Sbjct: 1005 KCQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNG 1064
Query: 1073 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132
FDNHDFPDKGISKLCLVNELD S LLVASC+G++RIWK+Y K KQKLVT FSSIQGHKP
Sbjct: 1065 FDNHDFPDKGISKLCLVNELDDSQLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKP 1124
Query: 1133 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192
G R N VVDWQQQSGYLYASGEVS++ LWDLEKE Q+V IPS S+C ++AL+ASQVHG
Sbjct: 1125 GARDLNAVVDWQQQSGYLYASGEVSTVTLWDLEKE-QLVRSIPSESECGVTALSASQVHG 1183
Query: 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKV 1243
GQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAKV
Sbjct: 1184 GQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKV 1233
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | ||||||
| TAIR|locus:2097633 | 1344 | RAPTOR1 "AT3G08850" [Arabidops | 0.971 | 0.912 | 0.768 | 0.0 | |
| RGD|1311784 | 1345 | Rptor "regulatory associated p | 0.306 | 0.287 | 0.607 | 3e-248 | |
| DICTYBASE|DDB_G0270398 | 1509 | raptor "Raptor family protein" | 0.314 | 0.263 | 0.639 | 3.5e-239 | |
| FB|FBgn0029840 | 1624 | raptor "raptor" [Drosophila me | 0.310 | 0.241 | 0.578 | 2.5e-213 | |
| POMBASE|SPAC57A7.11 | 1313 | mip1 "WD repeat protein, Rapto | 0.460 | 0.442 | 0.524 | 2.4e-197 | |
| UNIPROTKB|Q2KFQ3 | 1582 | MGCH7_ch7g632 "Putative unchar | 0.484 | 0.386 | 0.479 | 9.1e-180 | |
| ASPGD|ASPL0000073481 | 1431 | AN4639 [Emericella nidulans (t | 0.408 | 0.360 | 0.524 | 3.5e-176 | |
| UNIPROTKB|Q8N122 | 1335 | RPTOR "Regulatory-associated p | 0.309 | 0.292 | 0.63 | 4e-171 | |
| UNIPROTKB|F1MG06 | 1335 | RPTOR "Uncharacterized protein | 0.309 | 0.292 | 0.63 | 5.1e-171 | |
| UNIPROTKB|E1C1B6 | 1336 | RPTOR "Uncharacterized protein | 0.309 | 0.291 | 0.632 | 9.4e-170 |
| TAIR|locus:2097633 RAPTOR1 "AT3G08850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4933 (1741.6 bits), Expect = 0., P = 0.
Identities = 960/1250 (76%), Positives = 1056/1250 (84%)
Query: 1 MALGDLMASRFSQSAV--VSNHLND-DCGSAHGDVDLRR-DSDTASSSYTNNASVXXXXX 56
MALGDLM SRFSQS+V VSNH D DC S+H D D RR DS+ SSS N +
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNGTTEGAAT 60
Query: 57 XXXXSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
S+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 61 AT--SMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSPXXXXXXXXXX 716
VF+LGTLLDIGFDS + KIRAE +II+SLL VVSDGSP
Sbjct: 659 VFALGTLLDIGFDSNKSVVEDEFDDDE--KIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 XXXXXGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
GHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S SSPL ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRIS-SSPLGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1073
CQ SS+SKLNN PIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1074 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1134 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
R N VVDWQQQSGYLYASGE S++ LWDLEKEQ +V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQ-LVRSVPSESECGVTALSASQVHGG 1184
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKV 1243
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAKV
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKV 1233
|
|
| RGD|1311784 Rptor "regulatory associated protein of MTOR, complex 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 3.0e-248, Sum P(4) = 3.0e-248
Identities = 251/413 (60%), Positives = 304/413 (73%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR---SLLHE-SLDYS 322
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + SL+ +LD
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 323 -----------LIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLL 371
++ +IPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLL
Sbjct: 296 ENSPGSTNANIILSRIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLL 355
Query: 372 VASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA 431
VASLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A
Sbjct: 356 VASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA 415
Query: 432 EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGP 491
++ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GP
Sbjct: 416 -FRHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGP 474
Query: 492 WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF 551
WA ALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+
Sbjct: 475 WA---ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSV 531
Query: 552 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611
L E R M AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL
Sbjct: 532 LADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLR 584
Query: 612 QWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
QW+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 585 QWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 637
|
|
| DICTYBASE|DDB_G0270398 raptor "Raptor family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 3.5e-239, Sum P(4) = 3.5e-239
Identities = 259/405 (63%), Positives = 315/405 (77%)
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
G+S+ S RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L +
Sbjct: 350 GSSSSSSHQRDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGI 408
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
++DKIPG + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+
Sbjct: 409 TADMLDKIPGNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNY 468
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF
Sbjct: 469 LLAERIMRSANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFF 528
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL
Sbjct: 529 TEQLTAFEVWLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALC 588
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S +
Sbjct: 589 VGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPA 648
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
+QR M+AFVL+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+
Sbjct: 649 DQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMA 701
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
K+WE+F EA+ + +A LL++ PEVRASAV +LG L+
Sbjct: 702 KMWENFEEAKWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI 746
|
|
| FB|FBgn0029840 raptor "raptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.5e-213, Sum P(6) = 2.5e-213
Identities = 235/406 (57%), Positives = 294/406 (72%)
Query: 262 SNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLH--ESL 319
+N S ++CI LAAC A+E LP + + PAD+FTSCLTTPI +AL+W+ + L +
Sbjct: 410 TNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRI 469
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
LIDKIPG+ DRRT++GELNWIFTA+TDTIAWN LP +LFQRLFRQDLLVASLFRNF
Sbjct: 470 QSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNF 529
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERI+RS +C+P+S P LPP ++H MW AWD+ ++ L QLP ++ D NA Y+ PFF
Sbjct: 530 LLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEIL-DHNAPYRQLPFF 588
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
QLTAF+VWLD SE + PPEQLPIVLQVLLSQ HR RAL LL RFLD+GPWAV+LAL
Sbjct: 589 EHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALG 648
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ++T ELR +LVFIW KILA+D SCQVDLVK+ + YF+ L
Sbjct: 649 VGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKE--YKYFLSVLQDTSVSK 706
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
E R ++AFVL+ IV GQ + ++ L+ +CL+ L ND L QWL +CLG
Sbjct: 707 EHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQL-----NDGSW--LLRQWLAICLG 759
Query: 620 KLWEDFTEAQTIGRRADA-PAIYVPLLSEPQPEVRASAVFSLGTLL 664
LW++F +A+ G R A +YV LL + PEVRA+AVF+LGT +
Sbjct: 760 MLWQNFEKARWSGARDLAHEKLYV-LLRDSIPEVRAAAVFALGTFI 804
|
|
| POMBASE|SPAC57A7.11 mip1 "WD repeat protein, Raptor homolog Mip1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 2.4e-197, Sum P(4) = 2.4e-197
Identities = 324/618 (52%), Positives = 413/618 (66%)
Query: 75 RHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECW 134
RH + + P+++ + WR ++R+KT AL++CLNI VDPPDVIK +P A+ ECW
Sbjct: 89 RHRGVISKKNAEPTET--IHDWRMRERLKTVSAALLVCLNIGVDPPDVIKPNPAAKYECW 146
Query: 135 IDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVL 194
IDPFS+ KALE IGKNL QQYE R RY+ LDP ++EVKKLC RR AK ER+L
Sbjct: 147 IDPFSLPASKALEAIGKNLQQQYETLSMRTRYRHYLDPAIEEVKKLCIGQRRNAKEERIL 206
Query: 195 FHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---N 251
FHYNGHGVP PTA+GEIW+FNK+YTQYIP+ + DL SWL P IYV+DCSAAG I+ N
Sbjct: 207 FHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFN 266
Query: 252 AFIELHDWGASNYSG---------STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302
F E D A + S CI LAAC ETLP + + PAD+FTSCLT+PI
Sbjct: 267 RFAEQRDKEALRIAKQNPNVLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLTSPI 326
Query: 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLF 362
+++RW+ ++ L+ +++ KIPGR DRRT LGELNWIFTA+TDTIAWNV P LF
Sbjct: 327 EISVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELNWIFTAITDTIAWNVFPKHLF 386
Query: 363 QRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQL 422
+RLFRQDL+VA+LFRNFLLAERIM +C P S P LPPTH H MW++WD+A + CLSQL
Sbjct: 387 RRLFRQDLMVAALFRNFLLAERIMLVHSCHPQSSPELPPTHDHPMWNSWDLAIDNCLSQL 446
Query: 423 PSLV-ADPNA---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFR 478
P ++ A+ EY+ S FFSEQLTAFEVWL G +KPP+QLP+VLQVLLSQ HR R
Sbjct: 447 PDMLDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLR 506
Query: 479 ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538
AL+LL +FLD+G WAVDLALS+GIFPYVLKLLQ+ EL+ +LVFIW +ILA+D SCQ D
Sbjct: 507 ALILLSKFLDLGVWAVDLALSIGIFPYVLKLLQSPAIELKPVLVFIWARILAVDDSCQAD 566
Query: 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA---GLIH---VC 592
L+KD G+ YF++ L+ P + F + I + HR + G C
Sbjct: 567 LLKDNGYGYFVQILN-----PNS---SIFPSSNISE-HRAMCAFILSVFCRGFPQGQLAC 617
Query: 593 LKH--LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 650
L L + + + L QW CLC+ +LWE+++EA+ G R +A ++ + P
Sbjct: 618 LNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDSVP 677
Query: 651 EVRASAVFSLGTLLDIGF 668
EVRAS + + T L GF
Sbjct: 678 EVRASVLTAFTTFL--GF 693
|
|
| UNIPROTKB|Q2KFQ3 MGCH7_ch7g632 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 9.1e-180, Sum P(2) = 9.1e-180
Identities = 314/655 (47%), Positives = 408/655 (62%)
Query: 73 ELRHEAFEASTPS-GPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARM 131
E RHE P P + + WR +DR+KT A+ +CLNI V+PPD +K +P A+M
Sbjct: 305 EKRHET--TGKPKLAPFE---IQDWRMRDRLKTVSAAIAVCLNIGVEPPDQLKTNPGAKM 359
Query: 132 ECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGE 191
E W DP QKALE IGK L QYE R RYK LDP+V++ KK C + R+ AK E
Sbjct: 360 EAWQDPTVTPAQKALENIGKALQSQYETLAMRTRYKQYLDPSVEDTKKFCLSLRKSAKDE 419
Query: 192 RVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVN 251
RVL HYNGHGVPKPT++GEIW+FNK+YTQYIP+ + DL WL+ P+I+V+DCS AG I++
Sbjct: 420 RVLLHYNGHGVPKPTSSGEIWVFNKNYTQYIPVSLYDLQHWLQAPTIFVWDCSEAGNILS 479
Query: 252 ---AFIELHDW--------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTT 300
F+E H+ ++Y + R I LAAC + + LP + PAD+FT CLTT
Sbjct: 480 NYHKFVEKHEKEEDEAVLRDPNHYKANFRPYIHLAACSSSQNLPTNPLLPADLFTCCLTT 539
Query: 301 PITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHD 360
PI MAL +F ++ L L K+PGR +RRT LGELNWIFTA+TDTIAW LP
Sbjct: 540 PIEMALWFFVLQNPLQTGLTPERAKKLPGRLQERRTPLGELNWIFTAITDTIAWTTLPRH 599
Query: 361 LFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS 420
LF++ FRQDL+VA+LFRNFLLA+R+M C+P S P LP T QH +W++WD+A + LS
Sbjct: 600 LFRKFFRQDLMVAALFRNFLLAQRVMSVYGCTPQSFPELPDTRQHPLWESWDLAVDQALS 659
Query: 421 QLPSLVADPNA----EYQPSPFFSEQLTAFEVWLDHGSE-HKKPPEQLPIVLQVLLSQCH 475
QLP L EYQ S FF+EQLTAF+V+L G +KPPEQLP+VLQVLLSQ H
Sbjct: 660 QLPMLERKETEGIEYEYQNSTFFTEQLTAFDVYLTRGDALQQKPPEQLPVVLQVLLSQQH 719
Query: 476 RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535
R RAL+LLGRFLD+GPWAV LALS+GI+PYVLKLLQ+ EL+ ++VFIWT++LA+D SC
Sbjct: 720 RVRALILLGRFLDLGPWAVQLALSIGIYPYVLKLLQSAAAELKPVMVFIWTRVLAVDTSC 779
Query: 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVL-AVIVDGHRRGQEACIEAGLIHVCLK 594
Q DL+KD G+ YF L E P + + A I+ +G + G + VC +
Sbjct: 780 QQDLIKDSGYQYFSNILKPSEGLPVANSDEHKAMCAFILAMLCKGYKP----GQV-VCNQ 834
Query: 595 -HLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPE 651
+ G E PL QW CLC+ +LW D EA+ G R +APA L + E
Sbjct: 835 TDIMGYCLYHILNEDNPLLRQWSCLCISQLWYDLPEAKWRGIRDNAPARLSILTKDGCSE 894
Query: 652 VRASAVFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSP 706
VRA+ ++++ T L I R E SI ++L + +DGSP
Sbjct: 895 VRAAVLYAMTTFLGIP-------------DLTDEVARIEESIAWTVLDMANDGSP 936
|
|
| ASPGD|ASPL0000073481 AN4639 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 3.5e-176, Sum P(3) = 3.5e-176
Identities = 285/543 (52%), Positives = 366/543 (67%)
Query: 144 KALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVP 203
K +E IGK L +QYE R RYK LDP+VDE KK C + RR AK ERVLFHYNGHGVP
Sbjct: 236 KLMEQIGKKLQEQYETLSLRTRYKQYLDPSVDETKKFCVSLRRNAKDERVLFHYNGHGVP 295
Query: 204 KPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHD-- 258
PT +GEIW+FNK+YTQYIP+ + DL WL PS++VFD S AG IV + F+E H+
Sbjct: 296 LPTQSGEIWVFNKNYTQYIPVSLYDLQQWLAGPSLFVFDVSHAGNIVQNFHTFVEKHEKE 355
Query: 259 ------WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR 312
+ + DCI+LAAC+ +E+LP + + PAD+FT CLTTPI +ALR+F +
Sbjct: 356 NLEQKRLDPNAIVQNYGDCIILAACQKNESLPTNPDLPADLFTCCLTTPIEIALRYFILQ 415
Query: 313 SLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLV 372
+ L ++ ++PGR DRR+ LGELNWIFTA+TDTIAW LP LF++LFRQDL+V
Sbjct: 416 NPLQSNIRIDDF-RVPGRLQDRRSPLGELNWIFTAITDTIAWKTLPRALFKKLFRQDLMV 474
Query: 373 ASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA- 431
A+LFRNFLL+ERIMR+ C PIS P LP TH H +W +WD+A E+ L+QLP+L+
Sbjct: 475 AALFRNFLLSERIMRTYKCQPISSPELPETHNHPLWKSWDLAVEMVLAQLPALIDHEEGR 534
Query: 432 ---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLD 488
EYQ S FF+EQLTAFE++L G K PP+QLPIVLQVLLSQ HR RAL+LL +FLD
Sbjct: 535 RQYEYQHSTFFAEQLTAFEMYLSSGPTEKSPPDQLPIVLQVLLSQAHRLRALILLSKFLD 594
Query: 489 MGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548
+GPWAV LALS+GIFPYV+KLLQ+ EL+ ++VFIW +I+A+D + Q DL+KD G YF
Sbjct: 595 LGPWAVHLALSIGIFPYVVKLLQSAAQELKPVMVFIWARIMAVDHTVQNDLLKDNGIHYF 654
Query: 549 IRFLDSMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603
I L+ P E RAM AF++++ + +GQ C+ + L CL HL D
Sbjct: 655 ISILNPSSPIPVGNASEHRAMCAFIVSIFCKNYTQGQNVCLSSDLFESCLIHLM-----D 709
Query: 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663
+ PL QW CLC+ LW DF EA+ +G R AP L +P PEVRA+ + +L T
Sbjct: 710 VEN-PLLRQWSCLCISMLWSDFPEAKWMGIRCSAPMRLCELNFDPVPEVRAAMLHALMTF 768
Query: 664 LDI 666
L I
Sbjct: 769 LGI 771
|
|
| UNIPROTKB|Q8N122 RPTOR "Regulatory-associated protein of mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 4.0e-171, Sum P(3) = 4.0e-171
Identities = 252/400 (63%), Positives = 301/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
|
|
| UNIPROTKB|F1MG06 RPTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 5.1e-171, Sum P(3) = 5.1e-171
Identities = 252/400 (63%), Positives = 302/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLCSLLSDPIPEVRCAAVFALGTFV 627
|
|
| UNIPROTKB|E1C1B6 RPTOR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1298 (462.0 bits), Expect = 9.4e-170, Sum P(3) = 9.4e-170
Identities = 253/400 (63%), Positives = 305/400 (76%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFC-KRSL-LHESLDYSLI 324
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC ++S+ L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKSVRLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNNYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C7J8E5 | RTOR2_ORYSJ | No assigned EC number | 0.7096 | 0.8668 | 0.8981 | yes | no |
| Q9LZW9 | RTOR2_ARATH | No assigned EC number | 0.7216 | 0.9500 | 0.8974 | no | no |
| Q8N122 | RPTOR_HUMAN | No assigned EC number | 0.4318 | 0.8724 | 0.8247 | yes | no |
| Q93YQ1 | RTOR1_ARATH | No assigned EC number | 0.7864 | 0.9714 | 0.9122 | yes | no |
| Q0IQN5 | RTOR1_ORYSJ | No assigned EC number | 0.6918 | 0.9675 | 0.8984 | yes | no |
| Q8K4Q0 | RPTOR_MOUSE | No assigned EC number | 0.4232 | 0.8605 | 0.8134 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1262 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-05 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104
P ++ + IK+W+ E LL + H P + ++ D + L S +
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-----DGTYLASGSSDK 73
Query: 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1164
IR+W D + + + T + GH V V + L +S +I +WD+
Sbjct: 74 TIRLW---DLETGECVRT----LTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDV 122
Query: 1165 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
E + + + +D ++++ S G +A+ DG+++L+D+RT
Sbjct: 123 ETGKC-LTTLRGHTD-WVNSVAFSP-DGTFVASSSQDGTIKLWDLRT 166
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 29/192 (15%)
Query: 1027 IACWDTRFEKGTKT----------ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNH 1076
I WD K T P V ++ ++ IK+W+ + + H
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 1077 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1136
++ + D LL +S +G I++W D + L T ++GH+ GV
Sbjct: 177 T---GEVNSVAFSP--DGEKLLSSSSDGTIKLW---DLSTGKCLGT----LRGHENGVNS 224
Query: 1137 SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1196
V + L + E +I +WDL + V + ++ S+++L S G +LA
Sbjct: 225 ----VAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTN-SVTSLAWSP-DGKRLA 277
Query: 1197 AGFVDGSVRLYD 1208
+G DG++R++D
Sbjct: 278 SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (144), Expect = 4e-09
Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 1049 IVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107
++ ++ + +K+W+ L+ + + H ++ + L +S +G I+
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA----FSPDGKLLASGSSLDGTIK 181
Query: 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEK 1166
+W K ++ GH V + + G L AS +I LWDL
Sbjct: 182 LWDLRTGKPLS-------TLAGHTDPVSS----LAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226
+ + + + SD +S+ + G LA+G DG++RL+D+R+ L+ + H+ V
Sbjct: 231 GKLLRSTLSGHSDSVVSSFS---PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287
Query: 1227 ERV 1229
V
Sbjct: 288 LSV 290
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 37/201 (18%)
Query: 1029 CWDTRFEKGTKT----------ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF 1078
WD + +T P I+ ++ ++ IK+W+ E L + H
Sbjct: 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-- 134
Query: 1079 PDKGISKLCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134
VN + S + +S +G I++W D K V + GH V
Sbjct: 135 -------TDWVNSVAFSPDGTFVASSSQDGTIKLW-DLRT---GKCVATLT---GHTGEV 180
Query: 1135 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194
V + L +S +I LWDL + + + + ++++ S G
Sbjct: 181 NS----VAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHEN-GVNSVAFSP-DGYL 233
Query: 1195 LAAGFVDGSVRLYDVRTPDML 1215
LA+G DG++R++D+RT + +
Sbjct: 234 LASGSEDGTIRVWDLRTGECV 254
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (132), Expect = 1e-07
Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 17/217 (7%)
Query: 1017 RSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDN 1075
S+ L + + E + P ++++ + IK+W+ + L+ S +
Sbjct: 47 SDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG 106
Query: 1076 HDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134
D +SKL L + S+LL +S +G +++W D +++GH V
Sbjct: 107 L--HDSSVSKLALSSPDGNSILLASSSLDGTVKLW------DLSTPGKLIRTLEGHSESV 158
Query: 1135 RCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193
+ + L + + +I LWDL + + + +S+L S G
Sbjct: 159 TS----LAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGL 212
Query: 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
+A+G DG++RL+D+ T +L + H+ V
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (131), Expect = 2e-07
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 1019 SVSKLNNPIACWDTRFEKGTKTALLQP-------FSP----IVVAADENERIKIWNYE-E 1066
S S L+ I WD R K T FSP ++ + + I++W+
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126
L ++ H D +S D SLL S +G IR+W D + L+ +
Sbjct: 232 KLLRSTLSGH--SDSVVSSFSP----DGSLLASGSSDGTIRLW---DLRSSSSLL---RT 279
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
+ GH V V + L + ++ LWDLE + + + + +S+L+
Sbjct: 280 LSGHSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1217
S ++ G DG++RL+D+RT L
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSIS 1183
++GH GV C V + L +I +WDLE + + D + S
Sbjct: 5 LKGHTGGVTC----VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
A G LA+G D ++RL+D+ T + V + HT V ++F P
Sbjct: 61 A------DGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTS---YVSSVAFSP 103
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1262 | |||
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| PF14538 | 154 | Raptor_N: Raptor N-terminal CASPase like domain | 100.0 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.93 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.91 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.89 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.89 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.89 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.88 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.88 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.87 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.86 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.86 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.85 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.85 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.85 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.84 | |
| PTZ00421 | 493 | coronin; Provisional | 99.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.84 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.84 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.83 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.82 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.82 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.82 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.82 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.81 | |
| PTZ00420 | 568 | coronin; Provisional | 99.81 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.8 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.79 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.79 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.79 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.79 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.78 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.78 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.77 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.77 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.77 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| PTZ00421 | 493 | coronin; Provisional | 99.77 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.76 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.75 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.75 | |
| PTZ00420 | 568 | coronin; Provisional | 99.75 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.75 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.74 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.73 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.71 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.71 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.7 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.7 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.7 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.69 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.69 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.69 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.68 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.68 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.68 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.67 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.67 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.67 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.67 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.67 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.67 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.66 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.66 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.65 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.65 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.65 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.65 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.64 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.63 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.63 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.63 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.62 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.62 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.62 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.6 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.58 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.58 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.58 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.57 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.57 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.57 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.57 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.57 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.56 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.56 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.55 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.54 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.52 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.49 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.48 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.46 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.46 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.45 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.45 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.44 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.44 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.44 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.41 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.4 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.4 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.39 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.38 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.38 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.38 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.37 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.37 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.37 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.36 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.36 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.34 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.34 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.34 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.31 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.31 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.29 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.28 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.28 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.27 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.26 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.23 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.23 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.22 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.2 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.19 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.18 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.16 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.16 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.15 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.14 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.13 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.12 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.12 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.1 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.09 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.04 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.01 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.01 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.97 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.96 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.92 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.91 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.91 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.9 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.89 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.89 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.84 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.83 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.8 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.8 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.79 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.74 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.73 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.67 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.66 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.64 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.58 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.58 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.57 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.53 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.48 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.44 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.39 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.36 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.34 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.33 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.29 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.28 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.27 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.27 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.25 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.23 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.18 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.18 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.18 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.16 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.16 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.14 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.13 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.1 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.08 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.07 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.03 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.0 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.0 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.99 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.99 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.98 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.95 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.93 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.91 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.9 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.88 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.88 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.86 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.85 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.84 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.79 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.79 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.69 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.67 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.63 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.63 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.61 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.61 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.56 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.56 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.5 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.42 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.4 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.4 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.4 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.38 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.33 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.31 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.29 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.29 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.25 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.15 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.12 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.12 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.11 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.98 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.97 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.96 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.89 | |
| PF00656 | 248 | Peptidase_C14: Caspase domain; InterPro: IPR011600 | 96.88 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.82 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.74 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.74 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.73 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.69 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.66 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.64 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.61 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.55 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.53 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.52 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.52 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.51 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.5 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.46 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.43 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.39 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.39 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.34 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.33 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.27 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.19 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.18 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 96.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.08 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.86 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.79 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.67 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.65 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.64 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.61 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.6 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.55 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.53 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.52 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.52 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.46 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.34 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 95.27 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.22 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 95.16 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.16 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.15 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.0 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 94.93 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 94.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.87 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.86 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.67 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 94.63 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.61 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 94.61 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.48 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.43 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.41 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.38 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.31 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.27 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.2 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 94.15 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.04 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.03 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.98 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 93.91 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.87 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 93.76 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.66 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.65 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.58 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.5 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.43 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.25 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 93.25 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.22 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.2 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 92.81 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 92.68 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.62 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 92.48 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 92.21 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 92.13 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.12 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 91.98 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 91.54 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 91.48 | |
| smart00115 | 241 | CASc Caspase, interleukin-1 beta converting enzyme | 90.84 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.77 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 90.65 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 90.6 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 90.48 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.31 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 90.3 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 90.18 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 90.15 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 90.0 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 89.71 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.51 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 89.39 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.37 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 89.15 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.73 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 88.67 | |
| cd00032 | 243 | CASc Caspase, interleukin-1 beta converting enzyme | 88.49 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 88.12 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 87.77 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 87.29 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 87.29 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 87.2 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 87.09 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 86.83 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 86.52 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 86.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 86.03 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 85.96 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 85.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 85.59 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.53 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 85.46 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 85.41 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 85.14 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 85.02 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 84.88 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 84.67 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 84.14 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 84.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 83.86 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 83.36 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 83.28 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 83.22 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 83.21 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 83.09 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 82.82 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 82.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 82.59 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 82.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 82.53 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 82.53 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 82.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 82.27 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 82.16 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 81.89 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 81.02 | |
| PF01650 | 256 | Peptidase_C13: Peptidase C13 family; InterPro: IPR | 80.83 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 80.81 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 80.64 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 80.64 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 80.59 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 80.51 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 80.46 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 80.16 |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-282 Score=2464.14 Aligned_cols=1223 Identities=56% Similarity=0.903 Sum_probs=1015.2
Q ss_pred cccchhhhcccccc--cccCccc-CCCCCCCCCCccCCCCCCCCCcCCCCccccccccccCcccccccc--ccccccccc
Q 000836 3 LGDLMASRFSQSAV--VSNHLND-DCGSAHGDVDLRRDSDTASSSYTNNASVTTITTTTTTSLAYLPQT--VVLCELRHE 77 (1262)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rh~ 77 (1262)
+||+|.|+.+++|+ |.||.++ .+.++|+|...+.+.... . ..+++|...+...+++++.. +||+|+||.
T Consensus 1 ~~e~~~s~~~~~s~~~v~~~~~~~~~~~~~~d~~~~~~~~~~---~---~~~~~e~~~n~~~~~~l~~~~~ly~~d~Rh~ 74 (1387)
T KOG1517|consen 1 MGELSGSSPSSSSVQEVANHKVDNGADSSHDDTRSRLGDSIS---I---EQGFEEQYSNAQSLASLPQTFVLYLCDPRHD 74 (1387)
T ss_pred CCccccCCCCccchhhhccccccccccccccchhhhcccccc---c---ccchhhhhhhHHHHHhCcceEEEEecccccc
Confidence 58999999998876 8999985 455556665554443322 1 23556677888999999987 566999999
Q ss_pred ccccCCCCCCCCCC--CCcccccCCCcccceEEEEEEeecCCCCCCccccCCCcceeeccCCCCCChhHHHHHHHHHHHH
Q 000836 78 AFEASTPSGPSDSG--LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~--~~~~~~~~~~~kt~~~~~~lcln~g~dpp~~~~~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~ 155 (1262)
+ +| |.+.+... ++++|||||||||++||||||||||||||||+|++||||+||||||+++++.||+|+||||||.
T Consensus 75 ~--~g-pi~~~~~~~~~~~~wR~keRmkT~svAlvlCLnigVDPPdvik~~pcaRle~WiDP~s~~~~KA~e~IG~nlq~ 151 (1387)
T KOG1517|consen 75 E--DG-PIETEDIVIEEIPDWRMKERMKTASVALVLCLNIGVDPPDVIKISPCARLECWIDPFSMGPPKALEAIGKNLQR 151 (1387)
T ss_pred c--cC-CCchhhcccccCCCchHHHHhhhhHhHHhhhhhcCcCCccccCCCcchhhhhccCccccCChHHHHHHHHHHHH
Confidence 9 77 77766443 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccceeccCCCHHHHHHHHHHhcccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeccchHHHhhhcCC
Q 000836 156 QYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKT 235 (1262)
Q Consensus 156 qy~~~~~~~~~~~~~dp~~~~~~~~~~~~r~~~~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t~y~p~~~~~l~~~~~~ 235 (1262)
|||+||+|+|||+++||++|||||+|.++||+||+|||||||||||||+||+|||||||||+||||||+||+||++|||+
T Consensus 152 qYE~wqprtRYK~~lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~a 231 (1387)
T KOG1517|consen 152 QYERWQPRTRYKVCLDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGA 231 (1387)
T ss_pred HHHhhChhhhhhhccCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCchhhHHHHHH---hhccC----------CCCCCCCCCCceEEEEecCCcCCCCCCCCCCchhhhhcccchH
Q 000836 236 PSIYVFDCSAAGMIVNAFI---ELHDW----------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1262)
Q Consensus 236 p~~~v~Dc~~Ag~i~~~~~---~~~~~----------~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lP~DlftscL~tP~ 302 (1262)
|+||||||++||+||.+|. |.++. +.++..+.|+|||++|||+++|.|||+|+||||+|||||||||
T Consensus 232 P~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTsCLTTPI 311 (1387)
T KOG1517|consen 232 PTIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTSCLTTPI 311 (1387)
T ss_pred CeEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhhhhcCch
Confidence 9999999999998887774 44431 2345667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhhhccCCCCcccccCchhhHHHHHHHHHHHHhhccCCHHHHHHhhhhhhHHHHHHHHHHHH
Q 000836 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLA 382 (1262)
Q Consensus 303 ~~al~~~~~~~~l~~~~~~~~~~~ipg~~~~~~~~l~el~~i~~ai~d~iA~~~lp~~~f~~lFr~d~~va~lfrnFlla 382 (1262)
+|||+||++|++++..++.++|++|||+++|||||||||||||||||||||||+|||++||||||||+|||+||||||||
T Consensus 312 ~isl~w~~~~s~l~~~i~~~lidkIPGrlnDRRT~LGELNWIFTAITDTIAWn~lPR~LFQrLFRQDLLvAsLFRNFLLA 391 (1387)
T KOG1517|consen 312 EISLKWFLMQSPLKDFIDESLIDKIPGRLNDRRTPLGELNWIFTAITDTIAWNSLPRELFQRLFRQDLLVASLFRNFLLA 391 (1387)
T ss_pred hHHHHHHHhhchhhhhhhhHHHhhCCccccccccccchhceeeeeeeceehhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCC-CCcccC-CccHHHHHHHHHHHhhcCCCCCCCC
Q 000836 383 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADP-NAEYQP-SPFFSEQLTAFEVWLDHGSEHKKPP 460 (1262)
Q Consensus 383 ~rim~~~~~~p~s~P~lp~~~~h~lW~~wd~~ld~~l~ql~~~~~~~-~~~~~~-~~ff~~qLtafe~wL~~g~~~~~pp 460 (1262)
||||++|||||||.|+||+|++||||++||+|+|.||+|||.++.++ +++|++ ++||+|||||||+||++|++.++||
T Consensus 392 eRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PP 471 (1387)
T KOG1517|consen 392 ERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPP 471 (1387)
T ss_pred HHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCCh
Confidence 99999999999999999999999999999999999999999777776 699999 6999999999999999999999999
Q ss_pred cccchhHHHhccchhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhh
Q 000836 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1262)
Q Consensus 461 ~~lPiVLqvLlS~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~ 540 (1262)
+||||||||||||+||+|||.||+||||+|||||++||++||||||||||||++.|||++||||||||||+||+||.||+
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhhcC-CCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Q 000836 541 KDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1262)
Q Consensus 541 k~~~~~yf~~~L~~-~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1262)
|++||+||+++|++ ..+++|||+|||||||+|+++|+.||.+|++.+++.+|+++|++ ++.|++|||+|||||
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd------~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND------DPEPLLRQWLCICLG 625 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC------CccHHHHHHHHHHHH
Confidence 99999999999998 66777999999999999999999999999999999999999993 358999999999999
Q ss_pred hhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCC-CCCC-hHHHHHHHHHHH---
Q 000836 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD-EECD-DDEKIRAEISII--- 694 (1262)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~-~~~~-~~~~~~~e~~~~--- 694 (1262)
+||+++++|+|++++.++|++|+.+|.|++||||||+|||||+|++...+.|....... +... ++++...|..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999987644333100000 0000 223445677776
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHHhhhhhHHHHhhhccccccccccCCCCccccccCCCCCccccccCCCcc---cc
Q 000836 695 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT---RV 771 (1262)
Q Consensus 695 ~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 771 (1262)
+.++..++||+|+||+|+++++++++..|.++|..+|++|++++....-.+.+... ...+-+..+.....++ +.
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE~~~~~~~---~s~~~~~~~~~si~~~~~~s~ 782 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLEKSLPNKA---QSSHKFSDSGSSIVATTWMSL 782 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhhccCCccc---cccccccccccceeeeechhh
Confidence 58899999999999999999999999999999999999999886543322211100 0000111111111111 00
Q ss_pred ----cccc----hhccCcccCC-CCccccCcCCCCCCCCCCCCCCCCCcccCCCCCCccccCCCCCCCchhHHHHHHHHH
Q 000836 772 ----GNEA----VVRDGRVSTS-SPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMC 842 (1262)
Q Consensus 772 ----~~~~----~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~ 842 (1262)
..+. ....+..+.+ ..++..+.+.|.++..++..+...+...+...++.. ...+...++.|++..+.++
T Consensus 783 L~rs~d~s~~~a~aa~~~i~~~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~--~~~~~~~~at~s~~v~~~~ 860 (1387)
T KOG1517|consen 783 LIRSLDPSLENAEAAEGIISYSLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAV--HQPRSLDNATYSQSVKSML 860 (1387)
T ss_pred eeeccCcccchhHhhcCeeeccccccchhhhhcCCcccccHHHHHhHHHHHHHhhcccc--CCCccccchHHHHHHHHhH
Confidence 0000 1111222111 112223334455555555555444443333333321 1122345788999999999
Q ss_pred hccCCCCchhhhcchhhhhhhhhhcccccCcccCCCCCCCCCCCCCCCCCCCcccccccccccCCC----------CCCC
Q 000836 843 TLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNG----------GHLP 912 (1262)
Q Consensus 843 ~L~~dp~~~v~~~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~s~~~~~~----------~~~~ 912 (1262)
.+++||+|+|+.+++++..-+..|+....+.+..... .+. .+...+...+|.+++|+.++.. ++.+
T Consensus 861 ~~~k~P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~---g~~-~~~~~~~~~gL~~s~S~~d~~a~s~~~s~~~~~~~s 936 (1387)
T KOG1517|consen 861 RLAKDPNPRVSSLGRRVLSLIGKEQRVADPSKVSGPV---GEA-ASSASTPLQGLALSSSGSDMHASSKDDSSLTDENKS 936 (1387)
T ss_pred hhhcCCCccccchhhhhhhhhchhccccCcccccCCC---Ccc-cccccchhhhcccccCCCCCCcCCcccccccccccC
Confidence 9999999999999999999998887655544332211 111 1112233457778888776632 3333
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccCCCcCCCCCCCCCCCCCCCCCCCCcccCCCCC-CCceeeccccccccccCCcC
Q 000836 913 LKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLP-PSTIYNWSCGHFSKPLLTAA 991 (1262)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP-~S~f~~ws~~yF~ep~m~~~ 991 (1262)
...++++..|++..++.+.+|.....+.|+....+..+++.+..... ..+...+| ...||+||++||.+|+|+..
T Consensus 937 ~n~et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~~~~~l~~p~~~a~----~~e~S~l~~~~~f~~Ws~~yF~eP~m~~~ 1012 (1387)
T KOG1517|consen 937 LNDETPPSGPPGTNGLAGARRVCPLAFRPRLEKHPDRGLADPLDGAS----GSERSLLPTVTIFYDWSRKYFTEPQLKGA 1012 (1387)
T ss_pred cccCCCCCCCCCccccccCCcCCChhcCchhccCCCccccCcccccc----ccccccccceeeechhhHhhhcccccCCc
Confidence 44556666677777888888877666666665555444433332211 12244566 45579999999999999999
Q ss_pred CchhHHHHHHHHH--HHHHHHHHHHhhcc-cccccCC-CccccccCCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000836 992 DDTEEILARREER--EKFALEHIAKCQRS-SVSKLNN-PIACWDTRFEKG----TKTALLQPFSPIVVAADENERIKIWN 1063 (1262)
Q Consensus 992 e~ee~~s~er~~r--~~~~~e~i~~~q~~-~~~kl~~-~~~~w~~~~~~~----V~sl~fspdg~~Lasgs~dg~I~VWD 1063 (1262)
+++|+++.++++| ++.+.+.+.+.+++ +..++.. .++.|+.+.... +..+.|||+.+.++++++...|+|||
T Consensus 1013 e~dE~~s~~~~~r~wrr~R~e~i~kr~~~~~~~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd 1092 (1387)
T KOG1517|consen 1013 EADEEGSEEREERLWRRNRNEKIIKRQASQEIQKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWD 1092 (1387)
T ss_pred cccchhhhHHHHHHHHHhhHHHHHHhhcccceeeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEe
Confidence 9999999885444 66666766444443 3344433 378999875544 89999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC-CcceEEeeeeeccCCCCcccccceeEE
Q 000836 1064 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVD 1142 (1262)
Q Consensus 1064 ~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~-g~~~lvsa~~~l~~h~~~V~sv~l~v~ 1142 (1262)
++.++++..|.++..+...|+++.+.|+.|..++++|+.||.||||+.+... ++.++|++|..+.++...-.+.+++++
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence 9999999999999988899999999999999999999999999999998744 789999999999999888888888999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--eeeeec
Q 000836 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTR 1220 (1262)
Q Consensus 1143 wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~--~v~~~~ 1220 (1262)
|+|..++|+++|+.+.|||||+.+++ +++.++..++.+||++++...+|++|++|+.||+||+||.|.... .++.++
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 99999999999999999999999999 999999998888999988888999999999999999999998763 455544
Q ss_pred CCCCCCCC--eEEEEEecCCCCCEEEEecC-CceEEEeccc
Q 000836 1221 PHTQQVER--VVGISFQPGLDPAKVNGTPK-CLPSFSDLIY 1258 (1262)
Q Consensus 1221 ~~~gH~~~--V~slafsp~~~g~~LaSgSd-d~I~~WDLry 1258 (1262)
.|+.+ |..+.+++. |-..|++||. |.|.+||+|-
T Consensus 1252 ---~h~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1252 ---EHNDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ---ccCCcccceeEEeecC-CCcceeeeccCCeEEEEeccc
Confidence 45566 999999997 4457999994 5999999986
|
|
| >PF14538 Raptor_N: Raptor N-terminal CASPase like domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=495.26 Aligned_cols=154 Identities=75% Similarity=1.312 Sum_probs=152.4
Q ss_pred CcccceEEEEEEeecCCCCCCccccCCCcceeeccCCCCCChhHHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHH
Q 000836 101 RMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKL 180 (1262)
Q Consensus 101 ~~kt~~~~~~lcln~g~dpp~~~~~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~qy~~~~~~~~~~~~~dp~~~~~~~~ 180 (1262)
||||+++||+||||||+||||++|++||||+|||+||+.++++||+++||++||+|||+|++|+|||+++||++||+|++
T Consensus 1 ~~kt~~~~l~lcln~g~dppd~~~~~~~ar~~cW~dp~~~~~~~~~~~I~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~ 80 (154)
T PF14538_consen 1 RMKTVSVALVLCLNIGVDPPDVVKTSPCARLECWIDPSNMPPSKASEEIGKNLQSQYESWQPRARYKQSLDPTVEDLKRL 80 (154)
T ss_pred CceeeEEEEEEeecCCCCCCCccccCCCceEEEecCCcccCchhHHHHHHHHHHHHHHHhCccCcEEEecCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeccchHHHhhhcCCCeEEEEeCCchhhHHHHHH
Q 000836 181 CNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFI 254 (1262)
Q Consensus 181 ~~~~r~~~~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t~y~p~~~~~l~~~~~~p~~~v~Dc~~Ag~i~~~~~ 254 (1262)
|+++||+|++|||||||||||||+||++|||||||++||||||+||+||++|+|+|+||||||+|||+||++|.
T Consensus 81 ~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~AG~il~~f~ 154 (154)
T PF14538_consen 81 CQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSNAGSILNAFK 154 (154)
T ss_pred HHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCcHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999983
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=473.21 Aligned_cols=254 Identities=20% Similarity=0.249 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHhhhccCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCCCCcccCCccHHHHHHHHHHHhhcC
Q 000836 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHG 453 (1262)
Q Consensus 374 ~lfrnFlla~rim~~~~~~p~s~P~lp~~~~h~lW~~wd~~ld~~l~ql~~~~~~~~~~~~~~~ff~~qLtafe~wL~~g 453 (1262)
..|..=|=|=-+-=.||..-=.=| ++.-++|+++|+|.||+ ++|..+.+|||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PP-----------eQLPiVLQVLLSQvHRl---------------RAL~LL~RFLDlG 501 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPP-----------EQLPIVLQVLLSQVHRL---------------RALVLLARFLDLG 501 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCCh-----------HhcchHHHHHHHHHHHH---------------HHHHHHHHHhccc
Confidence 445544555455445554321111 56778999999999999 9999999999999
Q ss_pred CCCCC---CCcccchhHHHhccchhHHHHHHHHHHHhcCCHHHHHHHH---------hcCChhhhhhhcCC-C--chhHH
Q 000836 454 SEHKK---PPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLAL---------SVGIFPYVLKLLQT-T--TPELR 518 (1262)
Q Consensus 454 ~~~~~---pp~~lPiVLqvLlS~~~rlral~lL~~fld~gpwAv~lal---------s~gifpyvlkLLqs-~--~~elr 518 (1262)
+|+.. ..||||||||+|||.+.+||++++ || ||.+||+ +.+++-||++.|+. + .+|+|
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLV---FI----WAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqr 574 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILV---FI----WAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQR 574 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHH---HH----HHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHH
Confidence 99864 569999999999999999999999 99 9999986 67889999999986 2 25999
Q ss_pred HHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcC
Q 000836 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1262)
Q Consensus 519 ~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1262)
+|++||+|.|+..++.||..|+..+.+..|+.+|++.. .+++|||+|+||++||.||+++||.|.+.+++++++.+|.
T Consensus 575 tmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls- 652 (1387)
T KOG1517|consen 575 TMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS- 652 (1387)
T ss_pred HHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc-
Confidence 99999999999999999999999999999999999864 3899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhcC----chhhhHhh------------hccCch---HHHhhhhcCCCHHHHHHHHHH
Q 000836 599 SMPNDAQTEPLFLQWLCLCLGKLWED----FTEAQTIG------------RRADAP---AIYVPLLSEPQPEVRASAVFS 659 (1262)
Q Consensus 599 ~~~~~~~~~P~vR~w~~l~Lg~l~~~----~~~~~~~~------------~~~~~~---~~l~~ll~D~sPeVRaa~v~a 659 (1262)
|++||||++++.+||+|+++ +++.+... ++..+. ..++.+++|++|+||+|++++
T Consensus 653 ------D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 653 ------DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred ------CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999997 55554432 333333 268889999999999999999
Q ss_pred HhhccccCc
Q 000836 660 LGTLLDIGF 668 (1262)
Q Consensus 660 ls~~v~~~~ 668 (1262)
|++|+-.+.
T Consensus 727 ls~~~~g~~ 735 (1387)
T KOG1517|consen 727 LSHFVVGYV 735 (1387)
T ss_pred HHHHHHhhH
Confidence 999985443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=248.85 Aligned_cols=200 Identities=19% Similarity=0.295 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecC-CCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~-dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
..+|..+.|+.++++||||+.+|.++||+..+...+.+|.+|. +.|.++.|. +. ++..++||+.||+|++|+...
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fh-P~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFH-PVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEc-cCCCccceeeeccCCceeeeccCC
Confidence 3679999999999999999999999999999999999999999 899999997 44 477999999999999999976
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
.. .+..+.+|...|.. ++|+|+|.+|.+++.|.+-++||++++. .+....+|+.+ |.++ +|+++|.
T Consensus 251 --e~-----~l~~l~gH~~RVs~----VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~-v~~i-af~~DGS 316 (459)
T KOG0272|consen 251 --ET-----PLQDLEGHLARVSR----VAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKG-VFSI-AFQPDGS 316 (459)
T ss_pred --Cc-----chhhhhcchhhhee----eeecCCCceeeecccccchhhcccccch-hhHhhcccccc-ccee-EecCCCc
Confidence 21 23678999988888 9999999999999999999999999999 88888999987 9999 8999999
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
++++|+.|..-||||+|++.++. .+.||..+|.+|+|+|+ |.+|+|||.| .+++||||-
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im----~L~gH~k~I~~V~fsPN--Gy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIM----FLAGHIKEILSVAFSPN--GYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred eeeccCccchhheeecccCcEEE----EecccccceeeEeECCC--ceEEeecCCCCcEEEeeecc
Confidence 99999999999999999999433 45689999999999999 9999999955 999999973
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=239.10 Aligned_cols=204 Identities=18% Similarity=0.326 Sum_probs=169.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|+..|.|+.|+|+|..||+|+.|.++|+||..+...+.+.++|. ..|.|++|+ |||..|++|+.||.|++||.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~---~WVlcvaws--PDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK---NWVLCVAWS--PDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc---cEEEEEEEC--CCcchhhccccCCeEEEecC
Confidence 4688999999999999999999999999999999999999999999 899999997 99999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcC-----CCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-----QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-----~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
.+ |+. . -+.+.+|..+|++ ++|.| ....+++++.||.|+|||+..+. ++..+.+|..+ |+|+.
T Consensus 187 kt--g~~-~---g~~l~gH~K~It~----Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~-VTCvr 254 (480)
T KOG0271|consen 187 KT--GQQ-I---GRALRGHKKWITA----LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTAS-VTCVR 254 (480)
T ss_pred CC--CCc-c---cccccCcccceeE----EeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccc-eEEEE
Confidence 77 332 1 2788999999999 88876 34467777778888888876655 44444444333 33331
Q ss_pred --------------------------------------------------------------------------------
Q 000836 1187 -------------------------------------------------------------------------------- 1186 (1262)
Q Consensus 1187 -------------------------------------------------------------------------------- 1186 (1262)
T Consensus 255 wGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 255 WGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred EcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred ---------------------------------------EEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCC
Q 000836 1187 ---------------------------------------ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1262)
Q Consensus 1187 ---------------------------------------~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~ 1227 (1262)
.|+|+++++++++-|.+|++||-++++.+. .+.||-+
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la----sfRGHv~ 410 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA----SFRGHVA 410 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh----hhhhccc
Confidence 667888888888888888888888887433 5678899
Q ss_pred CeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1228 RVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1228 ~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
.|..++|+.+ .+.|+|||.| ++++||++.
T Consensus 411 ~VYqvawsaD--sRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 411 AVYQVAWSAD--SRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeEEEEeccC--ccEEEEcCCCceEEEEEeee
Confidence 9999999999 9999999977 999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=257.32 Aligned_cols=203 Identities=18% Similarity=0.293 Sum_probs=187.1
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
...|.++|..+.|+|+.++|+++++|++||+|.+.+..++..+++|. .+|+++.|+ |-|-+|+|||.|++-++|.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~---~PVwdV~F~--P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL---APVWDVQFA--PRGYYFATASHDQTARLWS 521 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC---cceeeEEec--CCceEEEecCCCceeeeee
Confidence 46789999999999999999999999999999999999999999999 899999997 8899999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
... ..+ .|.+.+|...|.+ +.|+|+..++++||.|++||+||+.++. .++.|.+|.+. |+++ .+++
T Consensus 522 ~d~--~~P-----lRifaghlsDV~c----v~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~-V~al-~~Sp 587 (707)
T KOG0263|consen 522 TDH--NKP-----LRIFAGHLSDVDC----VSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGP-VTAL-AFSP 587 (707)
T ss_pred ccc--CCc-----hhhhcccccccce----EEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCc-eEEE-EEcC
Confidence 865 222 4788999999999 9999999999999999999999999999 99999999997 9999 8999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
+|++|++|+.||.|++||+.++. ++. .+.+|++.|.++.|+.+ |.+||+|+.| ++++||+..
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~-~v~---~l~~Ht~ti~SlsFS~d--g~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGS-LVK---QLKGHTGTIYSLSFSRD--GNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCc-chh---hhhcccCceeEEEEecC--CCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999887 332 45578899999999999 8999999955 999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=242.51 Aligned_cols=198 Identities=16% Similarity=0.255 Sum_probs=181.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|..++|||+|++|+|++.|.+-++||+++++.+....+|. ..|.+++|. +||.+++||+.|..-||||++
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs---~~v~~iaf~--~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS---KGVFSIAFQ--PDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---cccceeEec--CCCceeeccCccchhheeecc
Confidence 566789999999999999999999999999999998888888999 899999995 999999999999999999999
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC-C
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-H 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~-~ 1191 (1262)
+ +++.+ .+.+|...|.+ |+|+|+|.+|++||.|++++|||+|..+ ++.+|++|.+- |+.+ .+.+ .
T Consensus 334 t--gr~im-----~L~gH~k~I~~----V~fsPNGy~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nl-VS~V-k~~p~~ 399 (459)
T KOG0272|consen 334 T--GRCIM-----FLAGHIKEILS----VAFSPNGYHLATGSSDNTCKVWDLRMRS-ELYTIPAHSNL-VSQV-KYSPQE 399 (459)
T ss_pred c--CcEEE-----Eecccccceee----EeECCCceEEeecCCCCcEEEeeecccc-cceecccccch-hhhe-EecccC
Confidence 8 66654 48899999999 9999999999999999999999999999 99999999997 9999 7776 8
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
|.+|+|++.|++++||..++.. ++ +.+.||.+.|.++..+++ +..++|++-| ++++|-
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~-~~---ksLaGHe~kV~s~Dis~d--~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWS-PL---KSLAGHEGKVISLDISPD--SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcc-cc---hhhcCCccceEEEEeccC--CceEEEeccCceeeecc
Confidence 8999999999999999998877 33 366799999999999999 9999999966 999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=213.45 Aligned_cols=200 Identities=16% Similarity=0.276 Sum_probs=174.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|..+..+++|++.++++.|+++++||+.+|+..+.|.+|. ..|.+++|+ +|...+++||.|.+|++|+.-
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~---~dVlsva~s--~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT---KDVLSVAFS--TDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC---CceEEEEec--CCCceeecCCCcceeeeeeec
Confidence 466779999999999999999999999999999999999999999 899999997 899999999999999999996
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~--~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
. .++.. ..-..+..+|.+ +.|+|+ ...|+++|.|++|++||+++.+ ....+.+|++. ++.+ .+++
T Consensus 136 g---~ck~t---~~~~~~~~WVsc----vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~-v~t~-~vSp 202 (315)
T KOG0279|consen 136 G---VCKYT---IHEDSHREWVSC----VRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGY-VNTV-TVSP 202 (315)
T ss_pred c---cEEEE---EecCCCcCcEEE----EEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhcccccccc-EEEE-EECC
Confidence 4 33211 111223778888 999998 6688999999999999999999 99999999997 9999 8999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
+|.+.++|+.||.+.+||++.++. ...+ +|...|.+++|+|+ ...|+.+.+..|++||+.
T Consensus 203 DGslcasGgkdg~~~LwdL~~~k~-lysl----~a~~~v~sl~fspn--rywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 203 DGSLCASGGKDGEAMLWDLNEGKN-LYSL----EAFDIVNSLCFSPN--RYWLCAATATSIKIWDLE 262 (315)
T ss_pred CCCEEecCCCCceEEEEEccCCce-eEec----cCCCeEeeEEecCC--ceeEeeccCCceEEEecc
Confidence 999999999999999999998884 3232 56789999999999 777877777799999984
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=210.01 Aligned_cols=209 Identities=14% Similarity=0.178 Sum_probs=184.6
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
--..|..+|.++.|++|.+++++++.||.+.|||.-+..+++.++-.. ..|...+|+ |.|+++++|+-|....||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~s--PSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYS--PSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEEC--CCCCeEEecCcCceeEEE
Confidence 345678999999999999999999999999999999999999888777 899999997 999999999999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
++... .....+..-+.+.+|.+-+.+ +.|-. +++|++++.|.++.+||+++++ .+..|.+|.+. |.++ ..+
T Consensus 125 ~ls~~-d~~g~~~v~r~l~gHtgylSc----C~f~d-D~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD-V~sl-sl~ 195 (343)
T KOG0286|consen 125 PLSTR-DAEGNVRVSRELAGHTGYLSC----CRFLD-DNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD-VMSL-SLS 195 (343)
T ss_pred ecccc-cccccceeeeeecCccceeEE----EEEcC-CCceEecCCCceEEEEEcccce-EEEEecCCccc-EEEE-ecC
Confidence 99863 112122223778999999888 77755 8899999999999999999999 99999999998 9999 777
Q ss_pred C-CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1190 V-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1190 ~-~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
| +++.|++|+.|+..++||+|.+. .++ .+.+|...|++|.|.|+ |.-+++||+| ..+++|+|-
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~-c~q---tF~ghesDINsv~ffP~--G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQ-CVQ---TFEGHESDINSVRFFPS--GDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcc-eeE---eecccccccceEEEccC--CCeeeecCCCceeEEEeecC
Confidence 7 99999999999999999999886 443 56688999999999999 9999999988 999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=218.72 Aligned_cols=205 Identities=18% Similarity=0.354 Sum_probs=174.3
Q ss_pred cCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1032 TRFEKGTKTALLQP-----FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp-----dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
.+|...|++++|.| ..++||+++.||.|+|||+..++++..+.+|+ ..|+|++|- ...++.+||.|++|
T Consensus 197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwG---G~gliySgS~DrtI 270 (480)
T KOG0271|consen 197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWG---GEGLIYSGSQDRTI 270 (480)
T ss_pred cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc---cceEEEEEc---CCceEEecCCCceE
Confidence 34667899999976 56699999999999999999999999999999 899999993 55799999999999
Q ss_pred EEEEcCCCC-------------------------------Cc------------------------ceEEee--------
Q 000836 1107 RIWKDYDQK-------------------------------DK------------------------QKLVTA-------- 1123 (1262)
Q Consensus 1107 rIWD~~~~~-------------------------------g~------------------------~~lvsa-------- 1123 (1262)
++|+...+. +. ..+|+.
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence 999976310 00 113322
Q ss_pred e---------eeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1124 F---------SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1124 ~---------~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
| ....+|...|+. +.|+|++.++++++.|+.|++||.++++ .+.+|.+|-.. |..+ +|+.+.++
T Consensus 351 W~p~~~kkpi~rmtgHq~lVn~----V~fSPd~r~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~-VYqv-awsaDsRL 423 (480)
T KOG0271|consen 351 WNPFKSKKPITRMTGHQALVNH----VSFSPDGRYIASASFDKSVKLWDGRTGK-FLASFRGHVAA-VYQV-AWSADSRL 423 (480)
T ss_pred ecccccccchhhhhchhhheee----EEECCCccEEEEeecccceeeeeCCCcc-hhhhhhhccce-eEEE-EeccCccE
Confidence 1 123456677777 8999999999999999999999999999 99999999997 9999 88999999
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
+++|+.|.++++||+++.+ +. ..+.||...|.++.|+|+ |..+++|+.| .+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkK-l~---~DLpGh~DEVf~vDwspD--G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK-LK---QDLPGHADEVFAVDWSPD--GQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeee-ec---ccCCCCCceEEEEEecCC--CceeecCCCceEEEeec
Confidence 9999999999999999877 33 256689999999999999 8999999988 888884
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-22 Score=217.19 Aligned_cols=200 Identities=19% Similarity=0.323 Sum_probs=181.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|-+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.+|. ..|..++++ +-..++++++.|+.|+.||+.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi---~~vr~vavS--~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI---ETVRGVAVS--KRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh---heeeeeeec--ccCceEEEecCCCeeEEEech
Confidence 366889999999999999999999999999999999999999999 899999998 677899999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. . +.+ +.+-+|-+.|.+ ++.+|.-..|++||.|.++||||+|+.. .+..+.+|... |.++ .+.+..
T Consensus 224 ~--n--kvI---R~YhGHlS~V~~----L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~-V~~V-~~~~~d 289 (460)
T KOG0285|consen 224 Y--N--KVI---RHYHGHLSGVYC----LDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP-VASV-MCQPTD 289 (460)
T ss_pred h--h--hhH---HHhccccceeEE----EeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCc-ceeE-EeecCC
Confidence 5 2 233 778899999999 8889999999999999999999999999 99999999997 9999 777778
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
..+++|+.|++|++||++.++.+. +...|+..|.+++.+|. ...++|+|.|.|+-|++.
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~--e~~fASas~dnik~w~~p 348 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPK--ENLFASASPDNIKQWKLP 348 (460)
T ss_pred CceEEecCCceEEEeeeccCceeE----eeecccceeeEEecCCc--hhhhhccCCccceeccCC
Confidence 899999999999999999988544 33456789999999999 889999999999999985
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=225.66 Aligned_cols=201 Identities=19% Similarity=0.314 Sum_probs=174.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|+..|.++.|+++|.++++|+.+|.|++|+..-. .+..++.|. ...|++++|+ +....|+++|+||+|+|||..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh--~eaIRdlafS--pnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHH--AEAIRDLAFS--PNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhh--hhhhheeccC--CCCceeEEecCCCeEEEEecc
Confidence 47788999999999999999999999999998743 344455554 2689999998 677899999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. .+.+ +.+.+|.-.|++ ++|+|..+.++++|.|..|++||.+++. |+.++..|+.. |..+ .|++++
T Consensus 211 ~--~kee-----~vL~GHgwdVks----vdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKnt-Vl~~-~f~~n~ 276 (464)
T KOG0284|consen 211 M--PKEE-----RVLRGHGWDVKS----VDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNT-VLAV-KFNPNG 276 (464)
T ss_pred C--Cchh-----heeccCCCCcce----eccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccce-EEEE-EEcCCC
Confidence 6 3443 457899999999 9999999999999999999999999999 99999999997 9999 899999
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
++|++++.|..+++||+|+.+++. .+++|...|+++.|+|- ...+|++|+ ++.+.+|++-
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeeccccc-cccceeeccCCCceEEEecc
Confidence 999999999999999999655333 66788999999999998 667888887 5599999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=229.87 Aligned_cols=204 Identities=24% Similarity=0.374 Sum_probs=178.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
+...|.++.|+++|..+++++.++.|++|+..+++ .+..+.+|. ..|.+++|+ +++.++++|+.|++|||||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~---~~v~~~~fs--~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT---RGVSDVAFS--PDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc---cceeeeEEC--CCCcEEEEecCCceEEEeec
Confidence 35679999999999999999999999999998777 677777888 899999997 89999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.. .+.. .+++.+|...|++ ++|++++..+++|+.|++|+|||+++++ ++..+.+|.+. |+++ +++++
T Consensus 233 ~~-~~~~-----~~~l~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-is~~-~f~~d 299 (456)
T KOG0266|consen 233 KD-DGRN-----LKTLKGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-ISGL-AFSPD 299 (456)
T ss_pred cC-CCeE-----EEEecCCCCceEE----EEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc-eEEE-EECCC
Confidence 43 2222 3778999999998 9999999999999999999999999999 99999999997 9999 99999
Q ss_pred CCEEEEEECCCcEEEEECCCCCce-eeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~-v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
+++|++++.||.|+|||+.++... ...+....... +++++.|+|+ +.++++++.| .+++||++.
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~--~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPN--GKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCC--CcEEEEecCCCeEEEEEccC
Confidence 999999999999999999988732 23332333223 6999999999 9999999977 999999973
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=202.98 Aligned_cols=199 Identities=16% Similarity=0.252 Sum_probs=175.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|..-+.|+.|-+ +.+|+||+.|.+..+||+++|+.+..|.+|. +.|.++.++ +.+++.+++|+.|+..++||++
T Consensus 143 gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~---gDV~slsl~-p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 143 GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHT---GDVMSLSLS-PSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred CccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCc---ccEEEEecC-CCCCCeEEecccccceeeeecc
Confidence 4667799999988 5678999999999999999999999999999 899999997 4499999999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCC-CCCeeEEEEEcCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs-~~~VtsLa~~s~~ 1191 (1262)
. +.. .+++.+|.+.|++ +.|.|+|.-+++|++|+++|+||+|..+ .+..+.... ...|+++ .|+..
T Consensus 218 ~--~~c-----~qtF~ghesDINs----v~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~ys~~~~~~gitSv-~FS~S 284 (343)
T KOG0286|consen 218 S--GQC-----VQTFEGHESDINS----VRFFPSGDAFATGSDDATCRLYDLRADQ-ELAVYSHDSIICGITSV-AFSKS 284 (343)
T ss_pred C--cce-----eEeecccccccce----EEEccCCCeeeecCCCceeEEEeecCCc-EEeeeccCcccCCceeE-EEccc
Confidence 7 433 3789999999999 9999999999999999999999999988 777776432 2259999 89999
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
|++|.+|..|..+.|||.-.++. +. .+.||.+.|.++..+|+ |..++|||.| .+++|.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~-vg---~L~GHeNRvScl~~s~D--G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGER-VG---VLAGHENRVSCLGVSPD--GMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccce-EE---EeeccCCeeEEEEECCC--CcEEEecchhHheeecC
Confidence 99999999999999999987773 32 34588999999999999 9999999977 999993
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=227.52 Aligned_cols=200 Identities=18% Similarity=0.250 Sum_probs=177.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------cEEEEeeCCCCCCCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-------------------------------TLLNSFDNHDFPDKG 1082 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-------------------------------~~l~~~~~h~~~~~~ 1082 (1262)
....++|..|++++.++|.|-.|..|++|.+... ....++.+|. ++
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~---GP 453 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS---GP 453 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC---Cc
Confidence 3467999999999999999999999999988731 1123366777 89
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEE
Q 000836 1083 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1083 ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW 1162 (1262)
|....|+ ++.++|+++|.|++||+|.+.+ ...+ -..++|..+|+. +.|+|.|-+++++|.|++.++|
T Consensus 454 Vyg~sFs--Pd~rfLlScSED~svRLWsl~t---~s~~----V~y~GH~~PVwd----V~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 454 VYGCSFS--PDRRFLLSCSEDSSVRLWSLDT---WSCL----VIYKGHLAPVWD----VQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred eeeeeec--ccccceeeccCCcceeeeeccc---ceeE----EEecCCCcceee----EEecCCceEEEecCCCceeeee
Confidence 9999997 8999999999999999999976 2222 356799999999 9999999999999999999999
Q ss_pred eCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCE
Q 000836 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1262)
Q Consensus 1163 Dlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~ 1242 (1262)
...... +++.+.+|-.. |.|+ .|+|+++++++|+.|.+||+||+.++. .++.+ .||.++|++++|+|+ |++
T Consensus 521 s~d~~~-PlRifaghlsD-V~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF---~GH~~~V~al~~Sp~--Gr~ 591 (707)
T KOG0263|consen 521 STDHNK-PLRIFAGHLSD-VDCV-SFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIF---TGHKGPVTALAFSPC--GRY 591 (707)
T ss_pred ecccCC-chhhhcccccc-cceE-EECCcccccccCCCCceEEEEEcCCCc-EEEEe---cCCCCceEEEEEcCC--Cce
Confidence 999999 99999999987 9999 899999999999999999999999988 56555 578999999999999 999
Q ss_pred EEEecCC-ceEEEeccc
Q 000836 1243 VNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1243 LaSgSdd-~I~~WDLry 1258 (1262)
|+||+++ .|++||+.+
T Consensus 592 LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLAN 608 (707)
T ss_pred EeecccCCcEEEEEcCC
Confidence 9999966 999999976
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=211.24 Aligned_cols=205 Identities=16% Similarity=0.287 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
...|++++|+.+|..||+|+.+|.++||+.. |.++.++..|. ++|.+++|. .+|++|++|+-||++.+||...+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk---gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK---GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC---CceEEEEEc--CCCCEEEeccCCccEEEEeccCc
Confidence 3579999999999999999999999999987 88889999999 999999996 89999999999999999998531
Q ss_pred CCc------------------ceEE----------------eeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEE
Q 000836 1115 KDK------------------QKLV----------------TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1262)
Q Consensus 1115 ~g~------------------~~lv----------------sa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~Ir 1160 (1262)
.-+ .+.+ .+..++.+|...|.. +.|+|.+..|+++++|++++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a----lk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA----LKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE----EEECCCCceEEEecCCCeeE
Confidence 000 0000 012456778889988 99999999999999999999
Q ss_pred EEeCCCCceeeEeecCCCCCCeeEEEEEcCC---------CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE
Q 000836 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVH---------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1161 IWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~---------g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s 1231 (1262)
||...... +...+.+|+.. |..+ .|+|. +..+++++.|++|++||+..+. ++. .+..|..+|.+
T Consensus 385 iWs~~~~~-~~~~l~~Hske-i~t~-~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~---~f~kH~~pVys 457 (524)
T KOG0273|consen 385 IWSMGQSN-SVHDLQAHSKE-IYTI-KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIH---TLMKHQEPVYS 457 (524)
T ss_pred eeecCCCc-chhhhhhhccc-eeeE-eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeE---eeccCCCceEE
Confidence 99999998 99999999986 8888 66664 4489999999999999999887 333 45577899999
Q ss_pred EEEecCCCCCEEEEecC-CceEEEeccc
Q 000836 1232 ISFQPGLDPAKVNGTPK-CLPSFSDLIY 1258 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgSd-d~I~~WDLry 1258 (1262)
|+|+|+ |+++++|+- +.+.+|+.+.
T Consensus 458 vafS~~--g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 458 VAFSPN--GRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred EEecCC--CcEEEecCCCCeeEeccccc
Confidence 999999 999999994 4999998753
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=218.59 Aligned_cols=209 Identities=19% Similarity=0.378 Sum_probs=174.5
Q ss_pred CCccccccC----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCC
Q 000836 1025 NPIACWDTR----------FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1262)
Q Consensus 1025 ~~~~~w~~~----------~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg 1094 (1262)
.+...|+++ |-..+++++++|||+++|+|++||.|+|||..+|-|..+|..|+ +.|+.++|. ..+
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt---s~Vt~v~f~--~~g 404 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT---SGVTAVQFT--ARG 404 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC---CceEEEEEE--ecC
Confidence 355666665 44679999999999999999999999999999999999999999 899999997 899
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeEe
Q 000836 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEKEQQMVNP 1173 (1262)
Q Consensus 1095 ~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg-~IrIWDlrs~~~~v~t 1173 (1262)
+.+++.|-||+||.||+.. .+. ++++......-.+ +++-.|.|..+.+|+.|. .|.+|++.+++ .+..
T Consensus 405 ~~llssSLDGtVRAwDlkR--YrN-----fRTft~P~p~Qfs---cvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDi 473 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKR--YRN-----FRTFTSPEPIQFS---CVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDI 473 (893)
T ss_pred CEEEEeecCCeEEeeeecc--cce-----eeeecCCCceeee---EEEEcCCCCEEEeeccceEEEEEEEeecCe-eeeh
Confidence 9999999999999999975 222 4666655433222 367778788888887665 59999999999 9999
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceE
Q 000836 1174 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPS 1252 (1262)
Q Consensus 1174 i~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~ 1252 (1262)
+.+|.+. |.++ +++++|..|++|+.|.+||+||+-.....+..+ .+...+.+++|+|+ |+.|+.+. ++.|.
T Consensus 474 LsGHEgP-Vs~l-~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPd--G~elaVaTldgqIt 545 (893)
T KOG0291|consen 474 LSGHEGP-VSGL-SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPD--GKELAVATLDGQIT 545 (893)
T ss_pred hcCCCCc-ceee-EEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCC--CCeEEEEEecceEE
Confidence 9999997 9999 899999999999999999999997654334444 24477999999999 88888887 66999
Q ss_pred EEecc
Q 000836 1253 FSDLI 1257 (1262)
Q Consensus 1253 ~WDLr 1257 (1262)
|||..
T Consensus 546 f~d~~ 550 (893)
T KOG0291|consen 546 FFDIK 550 (893)
T ss_pred EEEhh
Confidence 99974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=202.23 Aligned_cols=204 Identities=17% Similarity=0.279 Sum_probs=172.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~-tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
..|.+.|..+.|+|+|.++|+|+.|..|.+|+.. ..+-...+++|. +.|..+.|. .|++.+++++.|.+|+.||
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---gAVM~l~~~--~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---GAVMELHGM--RDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc---ceeEeeeec--cCCCEEEEecCCceEEEEe
Confidence 3567889999999999999999999999999965 335566778998 999999997 8999999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
.++ |+. .+..++|..-|+. +.-...|..++++ ++|+++|+||+|+.. +++++..... ++++ .|.
T Consensus 119 ~~t--G~~-----~rk~k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~kyq--ltAv-~f~ 183 (338)
T KOG0265|consen 119 AET--GKR-----IRKHKGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENKYQ--LTAV-GFK 183 (338)
T ss_pred ccc--cee-----eehhccccceeee----cCccccCCeEEEecCCCceEEEEeecccc-hhhcccccee--EEEE-Eec
Confidence 987 543 2667889888887 4433445555555 789999999999999 9999977655 8999 788
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecccccc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIYFLA 1261 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLryfla 1261 (1262)
..+..+.+|+-|+.|++||+|..+ ... ...||..+|+++..+|. |..+.+-+ ++.+++||+|+|..
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d-~~~---~lsGh~DtIt~lsls~~--gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKND-GLY---TLSGHADTITGLSLSRY--GSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ccccceeeccccCceeeeccccCc-ceE---EeecccCceeeEEeccC--CCccccccccceEEEEEecccCC
Confidence 889999999999999999999877 332 45688999999999999 88999999 55999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=196.72 Aligned_cols=201 Identities=17% Similarity=0.234 Sum_probs=173.0
Q ss_pred cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1032 TRFEKGTKTALLQPF-SPIVVAADENERIKIWNYE-----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspd-g~~Lasgs~dg~I~VWD~~-----tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
+.|...|+.++..+. ...+++++.|.+|.+|++. .|..++.+.+|. ..|+++..+ .||++.+++|.||+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~s--~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVLS--SDGNFALSASWDGT 86 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc---eEecceEEc--cCCceEEeccccce
Confidence 467788999999886 5588899999999999875 467889999998 889999997 89999999999999
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCC-CCCeeE
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1184 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs-~~~Vts 1184 (1262)
+|+||+.. ++.. +.+.+|...|.+ +++++++..+++|+.|++|++||+-.+. ..++..+. ...|+|
T Consensus 87 lrlWDl~~--g~~t-----~~f~GH~~dVls----va~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 87 LRLWDLAT--GEST-----RRFVGHTKDVLS----VAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEEecC--CcEE-----EEEEecCCceEE----EEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEE
Confidence 99999987 4332 668899999998 9999999999999999999999987654 66665553 345999
Q ss_pred EEEEcCC--CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1185 LTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1185 La~~s~~--g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+ .|+|+ ..+|++++.|++|++||+++.+ +. ..+.||++.++.++++|| |..+++|++| .+.+|||+
T Consensus 154 v-rfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~---~~~~gh~~~v~t~~vSpD--GslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 154 V-RFSPNESNPIIVSASWDKTVKVWNLRNCQ-LR---TTFIGHSGYVNTVTVSPD--GSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred E-EEcCCCCCcEEEEccCCceEEEEccCCcc-hh---hccccccccEEEEEECCC--CCEEecCCCCceEEEEEcc
Confidence 9 78887 6899999999999999999766 22 367789999999999999 9999999966 99999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-21 Score=208.70 Aligned_cols=194 Identities=17% Similarity=0.301 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+|.+.|.|+.|. .+.+++|+.|.+|+|||+++|+++.++-.|. ..|..+.|+ ..+++|+|.|.+|+|||+.
T Consensus 235 GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHc---eaVLhlrf~----ng~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 235 GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC---EAVLHLRFS----NGYMVTCSKDRSIAVWDMA 305 (499)
T ss_pred cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhc---ceeEEEEEe----CCEEEEecCCceeEEEecc
Confidence 366889888885 5699999999999999999999999999999 899999995 4799999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
... -++..+.+.||...|+. ++|+ ..++++++.|++|++|++.+.. +++++.+|..+ |.|+ +..|
T Consensus 306 sps----~it~rrVLvGHrAaVNv----Vdfd--~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRG-IACl---QYr~ 370 (499)
T KOG0281|consen 306 SPT----DITLRRVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRG-IACL---QYRD 370 (499)
T ss_pred Cch----HHHHHHHHhhhhhheee----eccc--cceEEEecCCceEEEEecccee-eehhhhccccc-ceeh---hccC
Confidence 621 22234678899999988 7774 5699999999999999999999 99999999987 7766 6789
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
+++++|+.|.+||+||+..+. +.+ .++||..-|.++.|... .++||+ ++.|++||+.-
T Consensus 371 rlvVSGSSDntIRlwdi~~G~-cLR---vLeGHEeLvRciRFd~k----rIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGA-CLR---VLEGHEELVRCIRFDNK----RIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred eEEEecCCCceEEEEeccccH-HHH---HHhchHHhhhheeecCc----eeeeccccceEEEEeccc
Confidence 999999999999999999888 443 56688899999999755 789998 66999999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=216.86 Aligned_cols=206 Identities=12% Similarity=0.150 Sum_probs=162.2
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1032 TRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg-------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
..|...|.+++|+| ++.+|++|+.|++|+|||+.++ ..+..+.+|. ..|.+++|+ +..+++|++|+.|
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---~~V~~l~f~-P~~~~iLaSgs~D 147 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---KKVGIVSFH-PSAMNVLASAGAD 147 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---CcEEEEEeC-cCCCCEEEEEeCC
Confidence 35778899999999 7889999999999999999765 3567788888 899999996 3345799999999
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
|+|+|||+.. ++. ...+.+|...|.+ ++|++++..+++++.|+.|++||+++++ .+.++.+|.+..+.
T Consensus 148 gtVrIWDl~t--g~~-----~~~l~~h~~~V~s----la~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 148 MVVNVWDVER--GKA-----VEVIKCHSDQITS----LEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQ 215 (493)
T ss_pred CEEEEEECCC--CeE-----EEEEcCCCCceEE----EEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcce
Confidence 9999999976 322 2456788888988 9999999999999999999999999999 99999988765233
Q ss_pred EEEEEcCCCCEEEEEE----CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceEEEecc
Q 000836 1184 ALTASQVHGGQLAAGF----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDLI 1257 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs----~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~~WDLr 1257 (1262)
.+ .+.+++..+++++ .|+.|++||++......... .. .+...+....|+++ +..|++|+ ++.|++||++
T Consensus 216 ~~-~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-~~-d~~~~~~~~~~d~d--~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 216 RC-LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV-DL-DQSSALFIPFFDED--TNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EE-EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe-cc-CCCCceEEEEEcCC--CCEEEEEEeCCCeEEEEEee
Confidence 44 5566666665543 47999999999766444332 11 12345666778888 77777766 5599999986
Q ss_pred c
Q 000836 1258 Y 1258 (1262)
Q Consensus 1258 y 1258 (1262)
.
T Consensus 291 ~ 291 (493)
T PTZ00421 291 N 291 (493)
T ss_pred C
Confidence 3
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=190.21 Aligned_cols=210 Identities=17% Similarity=0.332 Sum_probs=177.9
Q ss_pred cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC---cEEEEe-eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1032 TRFEKGTKTALLQPF-SPIVVAADENERIKIWNYEED---TLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspd-g~~Lasgs~dg~I~VWD~~tg---~~l~~~-~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
..|..++..++|||- |..||+++.|..|+||+...+ .+...+ .+|. ..|.+++|+ |.|++|++||.|.++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk---rsVRsvAws--p~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK---RSVRSVAWS--PHGRYLASASFDATV 85 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch---heeeeeeec--CCCcEEEEeeccceE
Confidence 345678999999998 889999999999999999853 333333 2466 789999997 899999999999999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeEeecCCCCCCeeE
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~--~~v~ti~~hs~~~Vts 1184 (1262)
.||.-.. ++.+.+ .++.||...|.+ ++|+.+|++|++++.|+.|-||.+..+. .|+..++.|... |..
T Consensus 86 ~Iw~k~~--~efecv---~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-VK~ 155 (312)
T KOG0645|consen 86 VIWKKED--GEFECV---ATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-VKH 155 (312)
T ss_pred EEeecCC--CceeEE---eeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-ccE
Confidence 9999876 666666 789999999999 9999999999999999999999988433 488889999987 988
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccccc
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYFL 1260 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryfl 1260 (1262)
+ .|+|...+|++++.|.+|++|+-..+..-.+. +++.+|.+.|.+++|++. |..|++++++ .+++|-+++-+
T Consensus 156 V-~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~-~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 156 V-IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV-QTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred E-EEcCCcceeEEeccCCeEEEEeecCCCCeeEE-EEecCccceEEEEEecCC--CceEEEecCCcceEeeeeccCc
Confidence 8 88999999999999999999988743322222 256788899999999999 8899999977 99999876544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=210.51 Aligned_cols=200 Identities=15% Similarity=0.244 Sum_probs=172.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+..-+|..|.|.|+|+.|++|++.|.+.+|+..+-......+.|. ..|.++.|+ .++..+++|+.+|.|++|+..
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD---s~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD---SPVRTMKWS--HNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc---ccceeEEEc--cCCCEEEEcCCCceEEecccc
Confidence 334568999999999999999999999999985433333457888 899999998 899999999999999999986
Q ss_pred CCCCcceEEeeeeeccCC-CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1113 DQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h-~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
. ... +.+..| ...|++ ++|+|.+..++++++||+|+|||.+..+ ....+.+|.-. |.++ .|+|.
T Consensus 169 m--nnV------k~~~ahh~eaIRd----lafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwd-Vksv-dWHP~ 233 (464)
T KOG0284|consen 169 M--NNV------KIIQAHHAEAIRD----LAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWD-VKSV-DWHPT 233 (464)
T ss_pred h--hhh------HHhhHhhhhhhhe----eccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCC-ccee-ccCCc
Confidence 5 222 333444 488999 9999999999999999999999999988 77888888876 9999 88899
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
..++++|+.|..|++||.|++.++. +..+|++.|..+.|+++ +.+|+|+|.| .++++|+|.
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~----tlh~HKntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLA----TLHGHKNTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhh----hhhhccceEEEEEEcCC--CCeeEEccCCceEEEEehhH
Confidence 9999999999999999999999544 45578899999999999 7999999977 999999983
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=200.50 Aligned_cols=200 Identities=15% Similarity=0.307 Sum_probs=174.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+|...|.++.|-|.|.++++++.|.+|+.|+..+|.++.+|.+|. ..|..+... .||.++++|+.|.+|++|-..
T Consensus 191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~---ewvr~v~v~--~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS---EWVRMVRVN--QDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch---HhEEEEEec--CCeeEEEecCCCceEEEEEec
Confidence 456779999999999999999999999999999999999999999 799999986 899999999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCC---------------CCEEEEEeCCCeEEEEeCCCCceeeEeecCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---------------SGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~---------------~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h 1177 (1262)
+ +.++ ..+.+|...|.+ ++|.|. +..+.+++.|++||+||+.++. |+.++.+|
T Consensus 266 t--~~~k-----~~lR~hEh~vEc----i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~gh 333 (406)
T KOG0295|consen 266 T--KQCK-----AELREHEHPVEC----IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGH 333 (406)
T ss_pred c--chhh-----hhhhccccceEE----EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecc
Confidence 7 3332 346677777776 666542 2478888999999999999999 99999999
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1178 s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
... |..+ +++|.|++|+++..|++++|||+++.+++. +...|...|+++.|+.+ ..+++||+-+ .+++|.-
T Consensus 334 dnw-Vr~~-af~p~Gkyi~ScaDDktlrvwdl~~~~cmk----~~~ah~hfvt~lDfh~~--~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNW-VRGV-AFSPGGKYILSCADDKTLRVWDLKNLQCMK----TLEAHEHFVTSLDFHKT--APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cce-eeee-EEcCCCeEEEEEecCCcEEEEEeccceeee----ccCCCcceeEEEecCCC--CceEEeccccceeeeeec
Confidence 997 9999 899999999999999999999999888433 44467899999999999 8899999966 9999975
Q ss_pred c
Q 000836 1257 I 1257 (1262)
Q Consensus 1257 r 1257 (1262)
|
T Consensus 406 r 406 (406)
T KOG0295|consen 406 R 406 (406)
T ss_pred C
Confidence 4
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=214.83 Aligned_cols=198 Identities=18% Similarity=0.319 Sum_probs=177.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~d-g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.+|..+.|+..|.++|.|+.. |.+-||+|.+..-+-.-++|. ..+++++++ +||.+++||+.||+|+|||...
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~---~~i~~l~YS--pDgq~iaTG~eDgKVKvWn~~S- 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS---DRITSLAYS--PDGQLIATGAEDGKVKVWNTQS- 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc---cceeeEEEC--CCCcEEEeccCCCcEEEEeccC-
Confidence 678899999999999998754 899999999999888899999 899999998 9999999999999999999976
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
+-+ +.++.+|++.|+. +.|+..+..+++++-||+||.||+.+.+ +.+++.........|+ +..+.|.+
T Consensus 382 -gfC-----~vTFteHts~Vt~----v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~Qfscv-avD~sGel 449 (893)
T KOG0291|consen 382 -GFC-----FVTFTEHTSGVTA----VQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCV-AVDPSGEL 449 (893)
T ss_pred -ceE-----EEEeccCCCceEE----EEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEE-EEcCCCCE
Confidence 433 4588999999998 9999999999999999999999999999 9999988776557788 77889999
Q ss_pred EEEEECCC-cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1195 LAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1195 LatGs~DG-sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+.+|+.|. .|.||++.+++ +.. .+.||.++|.+++|+|. +..|+|||.| +|++||+-
T Consensus 450 V~AG~~d~F~IfvWS~qTGq-llD---iLsGHEgPVs~l~f~~~--~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQ-LLD---ILSGHEGPVSGLSFSPD--GSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEeeccceEEEEEEEeecCe-eee---hhcCCCCcceeeEEccc--cCeEEeccccceEEEEEee
Confidence 99999886 69999999998 442 56689999999999999 8899999966 99999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=218.00 Aligned_cols=203 Identities=16% Similarity=0.365 Sum_probs=172.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~-~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
..|...|.+++|+|++.++++|+.|++|+|||. ..+..+.++.+|. ..|++++|+ ++++++++|+.|++|||||
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~---~~v~~~~f~--p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS---TYVTSVAFS--PDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC---CceEEEEec--CCCCEEEEecCCCcEEEEe
Confidence 456678999999999999999999999999999 5568999999999 899999997 7789999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeEeecCCCCC-CeeEEEEE
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDC-SISALTAS 1188 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~-~v~ti~~hs~~-~VtsLa~~ 1188 (1262)
++. +++ .+.+.+|.+.|.+ ++|++++..+++++.|+.|++||+.++.. ++..+..+... +++++ .+
T Consensus 275 ~~~--~~~-----~~~l~~hs~~is~----~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~f 342 (456)
T KOG0266|consen 275 VRT--GEC-----VRKLKGHSDGISG----LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSV-QF 342 (456)
T ss_pred ccC--CeE-----EEeeeccCCceEE----EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEE-EE
Confidence 986 444 2778999999998 99999999999999999999999999982 24566666555 68998 89
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCC---CeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE---RVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~---~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
++++.++++++.|+.+++||++.+. ....+ .+|.. .+.+....++ +..+++|+.+ .|.+||+.
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~---~~~~~~~~~~~~~~~~~~--~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRSGK-SVGTY---TGHSNLVRCIFSPTLSTG--GKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccCCc-ceeee---cccCCcceeEecccccCC--CCeEEEEeCCceEEEEeCC
Confidence 9999999999999999999999877 33333 34444 3444455666 8999999977 99999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=188.24 Aligned_cols=211 Identities=16% Similarity=0.302 Sum_probs=176.0
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg--~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
+..|...|.+++|+|.|++|++|+.|.++.||.-..+ +++.++.+|. ..|.+++|+ .+|++|+|+|.|.+|=|
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE---nEVK~Vaws--~sG~~LATCSRDKSVWi 131 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE---NEVKCVAWS--ASGNYLATCSRDKSVWI 131 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc---cceeEEEEc--CCCCEEEEeeCCCeEEE
Confidence 3447788999999999999999999999999987755 7889999999 899999998 89999999999999999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCC-Cc-eeeEeecCCCCCCeeEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-EQ-QMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs-~~-~~v~ti~~hs~~~VtsLa 1186 (1262)
|.+.. +++.+.+ ..+++|...|.. +.|+|....|+++|.|.+|++|+-.. +. .+++++.+|+.. |.++
T Consensus 132 We~de-ddEfec~---aVL~~HtqDVK~----V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T-VW~~- 201 (312)
T KOG0645|consen 132 WEIDE-DDEFECI---AVLQEHTQDVKH----VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT-VWSL- 201 (312)
T ss_pred EEecC-CCcEEEE---eeeccccccccE----EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce-EEEE-
Confidence 99975 4555544 678999999998 99999999999999999999998662 22 389999999986 9999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCC-------C-----------------ceeeeec---------------CCCCCCC
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTP-------D-----------------MLVCSTR---------------PHTQQVE 1227 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DGsVrIWDlrs~-------~-----------------~~v~~~~---------------~~~gH~~ 1227 (1262)
.|++.|..+++++.|++|+||-..+. + ..++.++ ....|..
T Consensus 202 ~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 202 AFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred EecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 89999999999999999999984321 1 0011111 1123778
Q ss_pred CeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1228 RVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1228 ~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.|++|.|.|. ....|++|++| .+++|.+.
T Consensus 282 dVNsV~w~p~-~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPK-VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCC-CCCceeecCCCceEEEEEec
Confidence 9999999996 57788999866 99999873
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=188.46 Aligned_cols=203 Identities=15% Similarity=0.182 Sum_probs=166.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|+++.|+.+|+.+++|++||+++|||++...+-+.|+ |. +.|+++... ++...|++|..+|.|+|||+.
T Consensus 81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~---spVn~vvlh--pnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN---SPVNTVVLH--PNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC---CCcceEEec--CCcceEEeecCCCcEEEEEcc
Confidence 355679999999999999999999999999999865555553 44 689999985 788899999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeeEeecCCCCCCeeEEEE
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----QMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-----~~v~ti~~hs~~~VtsLa~ 1187 (1262)
...-..+ .+.+....|.+ +...++|..++++...|.+.+|++-..+ .++.+++.|.+. +..+ .
T Consensus 155 ~~~c~~~------liPe~~~~i~s----l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-il~C-~ 222 (311)
T KOG0315|consen 155 ENSCTHE------LIPEDDTSIQS----LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-ILRC-L 222 (311)
T ss_pred CCccccc------cCCCCCcceee----EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-EEEE-E
Confidence 6222222 22444456666 7778899999999999999999987644 378889999987 7777 7
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
++|++++|++++.|.+|+||+....- +.-....+|..|+...+|+.+ |++|+||+.| .+++||+..
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~~---kle~~l~gh~rWvWdc~FS~d--g~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDFF---KLELVLTGHQRWVWDCAFSAD--GEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCce---eeEEEeecCCceEEeeeeccC--ccEEEecCCCCceeeccccc
Confidence 99999999999999999999998651 111245688899999999999 9999999966 999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=202.42 Aligned_cols=203 Identities=20% Similarity=0.319 Sum_probs=168.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+..+|+.+.|||+...++++++|++|++||..++++...+++|. ..|.++.|. ..|.+++++|.|-.+++||...
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT---DSVFDISFD--ASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc---cceeEEEEe--cCccEEEecCCccchhheeHHH
Confidence 45779999999999999999999999999999999999999999 779999997 7899999999999999999965
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCC-------------
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC------------- 1180 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~------------- 1180 (1262)
. . ...+.+.+|...|.+ +.|-|.|.++++++.|.+|+.||+.++- |+.++++|...
T Consensus 182 ~---~---~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 182 F---F---RCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred H---H---HHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCeeEE
Confidence 1 1 123667888888888 8888999999999999999999999998 88888776542
Q ss_pred ----------------------------CeeEEEEEc--------------CCCCEEEEEECCCcEEEEECCCCCceeee
Q 000836 1181 ----------------------------SISALTASQ--------------VHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218 (1262)
Q Consensus 1181 ----------------------------~VtsLa~~s--------------~~g~lLatGs~DGsVrIWDlrs~~~~v~~ 1218 (1262)
+|.|+++-+ ..++++.+|+.|++||+||+.++..+.
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~-- 328 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF-- 328 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE--
Confidence 123331111 013588888888888888888876333
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1219 TRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1219 ~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
+..||.+||.+++|+|+ |++|+|+.|| ++++||+..
T Consensus 329 --tL~ghdnwVr~~af~p~--Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 329 --TLVGHDNWVRGVAFSPG--GKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred --EEecccceeeeeEEcCC--CeEEEEEecCCcEEEEEecc
Confidence 55688999999999999 9999999988 999999863
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=186.05 Aligned_cols=204 Identities=15% Similarity=0.247 Sum_probs=171.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+++|+.+...|+++.||+|+ ...||+||+.++. ++.+|.+|+ +.|+++.|- .+|..+.|||.||++||||++
T Consensus 40 dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccC---CceEEEEEe--ecCeEEEecCCCceEEEEecc
Confidence 36799999999999999998 7889999999874 689999998 899999994 899999999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. -.. +..-.|...|++ +..+|+...|++|..+|.|++||++... +...+--..+..|+++ ...++|
T Consensus 114 ~--~~~------qR~~~~~spVn~----vvlhpnQteLis~dqsg~irvWDl~~~~-c~~~liPe~~~~i~sl-~v~~dg 179 (311)
T KOG0315|consen 114 S--LSC------QRNYQHNSPVNT----VVLHPNQTELISGDQSGNIRVWDLGENS-CTHELIPEDDTSIQSL-TVMPDG 179 (311)
T ss_pred C--ccc------chhccCCCCcce----EEecCCcceEEeecCCCcEEEEEccCCc-cccccCCCCCcceeeE-EEcCCC
Confidence 7 222 223456688998 8889999999999999999999999998 7777644444459999 788999
Q ss_pred CEEEEEECCCcEEEEECCCCCce--eeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDML--VCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYFL 1260 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~--v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryfl 1260 (1262)
.+++++...|...+|++-..... +.-...++.|.+.+....++|+ +++|+++|.+ .+++|..-.|+
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEeecCCceEEEEecCCce
Confidence 99999999999999998764421 1112245678899999999999 9999999977 99999987663
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=191.83 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=169.8
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1036 KGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1036 ~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~t-g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
..+..++|++ .++.+++++.||++++||... ..++..|+.|. ..|.++.|. +.+...++++|.||+|++|+...
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~---~EV~Svdwn-~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK---REVYSVDWN-TVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh---hheEEeccc-cccceeEEeeccCCceEeecCCC
Confidence 5688999998 456788888899999999653 46889999999 899999995 88889999999999999999965
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
+.. .+++.+|...|.. ..|+|... .+++++.|+.+++||++... ....|+.|... |.|+.+...+.
T Consensus 137 ----~~S---v~Tf~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~E-il~cdw~ky~~ 203 (311)
T KOG0277|consen 137 ----PNS---VQTFNGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSE-ILCCDWSKYNH 203 (311)
T ss_pred ----Ccc---eEeecCCccEEEE----EecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccce-eEeecccccCC
Confidence 222 3678999999998 89999665 55566899999999999876 56669999865 99997777888
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
++++||+.|+.||+||+|+-+.++. ...+|.-.|..|.|+|+ ....|+|+|-| ++++||..
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~---eL~gh~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLF---ELNGHGLAVRKVKFSPH-HASLLASASYDMTVRIWDPE 265 (311)
T ss_pred cEEEecCCCceEEEEehhhccccce---eecCCceEEEEEecCcc-hhhHhhhccccceEEecccc
Confidence 9999999999999999998774443 34688899999999999 67789999977 99999964
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=213.10 Aligned_cols=202 Identities=16% Similarity=0.296 Sum_probs=174.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|.++|..++|||.++++++|++|-.|+||++++.+++.++.+|. .-|..+.|. +.-..++++|+|.+||||+..+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl---DYVRt~~FH--heyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL---DYVRTVFFH--HEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc---ceeEEeecc--CCCceEEEccCCCeEEEEeccC
Confidence 78999999999999999999999999999999999999999999 899999996 7788999999999999999976
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------------------------
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------------------------- 1168 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~------------------------- 1168 (1262)
+++ ...++||..-|.+ ..|+|....++++|-|.+|||||+..-+
T Consensus 125 --r~~-----iavltGHnHYVMc----AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~ 193 (1202)
T KOG0292|consen 125 --RKC-----IAVLTGHNHYVMC----AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ 193 (1202)
T ss_pred --Cce-----EEEEecCceEEEe----eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence 443 2578999999988 8999999999999999999999985311
Q ss_pred -e--eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000836 1169 -Q--MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNG 1245 (1262)
Q Consensus 1169 -~--~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaS 1245 (1262)
. ..+.+.+|..+ |+-+ +|+|.-.+|++|+.|..|++|.....+ .....+..||.+.|.++-|||+ ..+++|
T Consensus 194 ~DaVVK~VLEGHDRG-VNwa-AfhpTlpliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~--q~lIlS 267 (1202)
T KOG0292|consen 194 TDAVVKHVLEGHDRG-VNWA-AFHPTLPLIVSGADDRQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPH--QDLILS 267 (1202)
T ss_pred cCeeeeeeecccccc-cceE-EecCCcceEEecCCcceeeEEEecccc--ceeehhhhcccCCcceEEecCc--cceeEe
Confidence 0 11234567776 8888 889999999999999999999987544 2223466789999999999999 889999
Q ss_pred ecCC-ceEEEecc
Q 000836 1246 TPKC-LPSFSDLI 1257 (1262)
Q Consensus 1246 gSdd-~I~~WDLr 1257 (1262)
.|+| +|++||+.
T Consensus 268 nsEDksirVwDm~ 280 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMT 280 (1202)
T ss_pred cCCCccEEEEecc
Confidence 9987 99999974
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=204.52 Aligned_cols=203 Identities=18% Similarity=0.281 Sum_probs=180.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+..+|.++.|||..+.++++-.+|.|.|||.++...+++|.... .+|.+.+|. ...+.+++|++|+.||||+..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheee--eccceEEEecCCceEEEEeccc
Confidence 45789999999999999999999999999999999999999888 789999998 6778999999999999999976
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
. +.+ ..+..|..-|++ ++.+|...+++++++|-.|++||.+.+-.|.+++.+|+.. |.+++..+.+.+
T Consensus 87 --~--ekV---~~FeAH~DyIR~----iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-VMqv~fnPkD~n 154 (794)
T KOG0276|consen 87 --G--EKV---KTFEAHSDYIRS----IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-VMQVAFNPKDPN 154 (794)
T ss_pred --c--eee---EEeeccccceee----eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE-EEEEEecCCCcc
Confidence 2 223 678899999999 8999999999999999999999998876589999999997 999966666888
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.|++++-|++|+||.+.+... . + ++.+|...|++|.+-+.++..+|+||+|| ++++||..
T Consensus 155 tFaS~sLDrTVKVWslgs~~~-n--f-Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHP-N--F-TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ceeeeeccccEEEEEcCCCCC-c--e-eeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 999999999999999987662 2 2 56689999999999888556799999988 99999975
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=196.72 Aligned_cols=200 Identities=18% Similarity=0.275 Sum_probs=168.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----------------------------------------E
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN-----------------------------------------S 1072 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~-----------------------------------------~ 1072 (1262)
|.++|.+++|+..|.+|++++-|+++.+||..+|+..+ +
T Consensus 275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKT 354 (524)
T ss_pred cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCccee
Confidence 66899999999999999999999999999997654333 3
Q ss_pred eeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC----
Q 000836 1073 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG---- 1148 (1262)
Q Consensus 1073 ~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~---- 1148 (1262)
|.+|. +.|.+|.|. +.+.+|+++|+|++++||.... +.. ...+.+|...|.. +.|+|.+.
T Consensus 355 ~~GH~---g~V~alk~n--~tg~LLaS~SdD~TlkiWs~~~--~~~-----~~~l~~Hskei~t----~~wsp~g~v~~n 418 (524)
T KOG0273|consen 355 FIGHH---GEVNALKWN--PTGSLLASCSDDGTLKIWSMGQ--SNS-----VHDLQAHSKEIYT----IKWSPTGPVTSN 418 (524)
T ss_pred eeccc---CceEEEEEC--CCCceEEEecCCCeeEeeecCC--Ccc-----hhhhhhhccceee----EeecCCCCccCC
Confidence 44565 789999996 8899999999999999999865 222 3567889988887 88887654
Q ss_pred -----EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCC
Q 000836 1149 -----YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1223 (1262)
Q Consensus 1149 -----~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~ 1223 (1262)
.+++++.|++|++||+..+. +++++..|... |.++ .++++|.++++|+.||.|.||++++++ +++.++
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~p-Vysv-afS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~--- 491 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEP-VYSV-AFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQ--- 491 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCc-eEEE-EecCCCcEEEecCCCCeeEeccccchh-eeEeec---
Confidence 57888999999999999999 99999999987 9999 899999999999999999999999988 555542
Q ss_pred CCCCCeEEEEEecCCCCCEEEEecCCceEEEeccc
Q 000836 1224 QQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1224 gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLry 1258 (1262)
-.+.|..++|+.. |....++.+++.+.+-|+|+
T Consensus 492 -~~~~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 492 -GTGGIFELCWNAA-GDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred -CCCeEEEEEEcCC-CCEEEEEecCCCceEEEecC
Confidence 2366999999999 44444666778999999885
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=208.86 Aligned_cols=204 Identities=10% Similarity=0.113 Sum_probs=153.8
Q ss_pred cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------EEEEeeCCCCCCCCeEEEEEeecCCCc-EEEEEe
Q 000836 1032 TRFEKGTKTALLQPF-SPIVVAADENERIKIWNYEEDT--------LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVAS 1101 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspd-g~~Lasgs~dg~I~VWD~~tg~--------~l~~~~~h~~~~~~ItsL~fsn~~dg~-lLaTgS 1101 (1262)
..|...|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|. ..|++++|+ +++. ++++|+
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~---~~V~sVaf~--P~g~~iLaSgS 145 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK---KKISIIDWN--PMNYYIMCSSG 145 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC---CcEEEEEEC--CCCCeEEEEEe
Confidence 357788999999997 7899999999999999997642 345677888 899999997 5555 567999
Q ss_pred CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC
Q 000836 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~ 1181 (1262)
.||+|+|||++. +.. + ..+. |...|.+ ++|+++|..+++++.|+.|+|||+++++ .+.++.+|.+.
T Consensus 146 ~DgtIrIWDl~t--g~~--~---~~i~-~~~~V~S----lswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~gH~g~- 211 (568)
T PTZ00420 146 FDSFVNIWDIEN--EKR--A---FQIN-MPKKLSS----LKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHIHDGG- 211 (568)
T ss_pred CCCeEEEEECCC--CcE--E---EEEe-cCCcEEE----EEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEecccCC-
Confidence 999999999976 322 1 1222 4456777 9999999999999999999999999999 99999999875
Q ss_pred eeEEEE----EcCCCCEEEEEECCC----cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceE
Q 000836 1182 ISALTA----SQVHGGQLAAGFVDG----SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPS 1252 (1262)
Q Consensus 1182 VtsLa~----~s~~g~lLatGs~DG----sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~ 1252 (1262)
+.+... +++++.++++++.|+ .|+|||++....++... .+..+.+.+......++ +.++++|+.| .|+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~D~~t--g~l~lsGkGD~tIr 288 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHYDEST--GLIYLIGKGDGNCR 288 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEeeeCCC--CCEEEEEECCCeEE
Confidence 433222 347788888877664 79999999655455444 33333344433333344 8888888755 999
Q ss_pred EEecc
Q 000836 1253 FSDLI 1257 (1262)
Q Consensus 1253 ~WDLr 1257 (1262)
+|++.
T Consensus 289 ~~e~~ 293 (568)
T PTZ00420 289 YYQHS 293 (568)
T ss_pred EEEcc
Confidence 99984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=202.85 Aligned_cols=210 Identities=13% Similarity=0.233 Sum_probs=179.5
Q ss_pred CCccccccCCC----------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCC
Q 000836 1025 NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1094 (1262)
Q Consensus 1025 ~~~~~w~~~~~----------~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg 1094 (1262)
...+.|+.... .+|.+.+|-.--+++++|++|..|+||++.+++.+..|.+|. .-|.+++.. |..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~---DyIR~iavH--Pt~ 109 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS---DYIRSIAVH--PTL 109 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc---cceeeeeec--CCC
Confidence 34566776543 556777888778899999999999999999999999999999 899999996 788
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEe
Q 000836 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1262)
Q Consensus 1095 ~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~t 1173 (1262)
.+++|+|+|-+|++||... +.... +++.+|..-|.+ ++|+|.+ +.+++++-|++|+||.+.+.. +..+
T Consensus 110 P~vLtsSDDm~iKlW~we~---~wa~~---qtfeGH~HyVMq----v~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfT 178 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWEN---EWACE---QTFEGHEHYVMQ----VAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFT 178 (794)
T ss_pred CeEEecCCccEEEEeeccC---ceeee---eEEcCcceEEEE----EEecCCCccceeeeeccccEEEEEcCCCC-Ccee
Confidence 9999999999999999964 33333 789999999988 9999954 567777899999999999999 9999
Q ss_pred ecCCCCCCeeEEEEEcC-CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ce
Q 000836 1174 IPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LP 1251 (1262)
Q Consensus 1174 i~~hs~~~VtsLa~~s~-~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I 1251 (1262)
+.+|..+ |+|+..++. +.+++++|+.|.+|+|||..+.. ++ +++.||.+.|..+.|+|. -.+++|||+| ++
T Consensus 179 l~gHekG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV---~TLeGHt~Nvs~v~fhp~--lpiiisgsEDGTv 251 (794)
T KOG0276|consen 179 LEGHEKG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CV---QTLEGHTNNVSFVFFHPE--LPIIISGSEDGTV 251 (794)
T ss_pred eeccccC-cceEEeccCCCcceEEecCCCceEEEeecchHH-HH---HHhhcccccceEEEecCC--CcEEEEecCCccE
Confidence 9999998 999944432 33599999999999999999877 44 266789999999999999 8899999966 99
Q ss_pred EEEecc
Q 000836 1252 SFSDLI 1257 (1262)
Q Consensus 1252 ~~WDLr 1257 (1262)
++|.-.
T Consensus 252 riWhs~ 257 (794)
T KOG0276|consen 252 RIWNSK 257 (794)
T ss_pred EEecCc
Confidence 999854
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=182.29 Aligned_cols=196 Identities=18% Similarity=0.304 Sum_probs=169.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.+.+.|..+.|+-+|++.++++.|.+|++|+...|.+++++.+|. ..|.+++.+ .|...|++|+.|..|.+||+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVLDAALS--SDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC---ceeeecccc--ccccccccCCCCceEEEEEcc
Confidence 456789999999999999999999999999999999999999998 899999986 788999999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEeecCCCCCCeeEEEEEcCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
+ |+. .+.+.+|...|+. +.|+.+...+++|+.|.++++||.|+.. ++++.+....++ |.++ ...
T Consensus 90 T--Gkv-----~Rr~rgH~aqVNt----V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-V~Si---~v~ 154 (307)
T KOG0316|consen 90 T--GKV-----DRRFRGHLAQVNT----VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-VSSI---DVA 154 (307)
T ss_pred c--Cee-----eeecccccceeeE----EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-eeEE---Eec
Confidence 7 544 3788999999999 9999999999999999999999998743 288999888887 8888 346
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
++.|++|+.||++|.||+|.+...... + ..+|+++.|+++ ++..+.++ +..+++-|-
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy---~---g~pit~vs~s~d--~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDY---F---GHPITSVSFSKD--GNCSLASSLDSTLRLLDK 212 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhh---c---CCcceeEEecCC--CCEEEEeeccceeeeccc
Confidence 789999999999999999998843321 2 378999999999 77777777 447777663
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=183.82 Aligned_cols=201 Identities=22% Similarity=0.392 Sum_probs=168.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|..+|.++.|+|+++++++++.+|.|++||..+++....+..|. ..+..+.|+ ++++++++++.||.|++||..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAAS--ADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEEC--CCCCEEEEEcCCCeEEEEEcC
Confidence 567889999999999999999999999999999988888888888 788899997 777899999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. ++. + ..+..|...+.+ +.|++++..+++++.++.|++||+++.+ .+..+..|... ++++ .+++++
T Consensus 82 ~--~~~--~---~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~ 147 (289)
T cd00200 82 T--GEC--V---RTLTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDW-VNSV-AFSPDG 147 (289)
T ss_pred c--ccc--e---EEEeccCCcEEE----EEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCc-EEEE-EEcCcC
Confidence 6 222 1 345577777887 8999987777777779999999999888 88888888776 9999 788888
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
.++++++.||.|++||++.++ ....+ ..|...|.++.|+|+ +..+++++ ++.+.+||++.
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~-~~~~~---~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGK-CVATL---TGHTGEVNSVAFSPD--GEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CEEEEEcCCCcEEEEEccccc-cceeE---ecCccccceEEECCC--cCEEEEecCCCcEEEEECCC
Confidence 899988889999999998766 33333 356689999999999 76777777 55999999863
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-18 Score=217.88 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=161.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----c----EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg----~----~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
|...|.+++|+|+++++|+|+.|+.|+|||..+. . .+..+.. . ..|.+++|+ +.++.+|++|+.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~~v~~l~~~-~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R---SKLSGICWN-SYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c---CceeeEEec-cCCCCEEEEEeCCCe
Confidence 6778999999999999999999999999998642 1 1222322 3 578999996 556889999999999
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeE
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vts 1184 (1262)
|++||+.. ++ .+ ..+.+|...|++ ++|++ ++..+++||.|+.|++||++++. ++.++..+. . |.+
T Consensus 557 v~lWd~~~--~~--~~---~~~~~H~~~V~~----l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~~-~-v~~ 622 (793)
T PLN00181 557 VQVWDVAR--SQ--LV---TEMKEHEKRVWS----IDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTKA-N-ICC 622 (793)
T ss_pred EEEEECCC--Ce--EE---EEecCCCCCEEE----EEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecCC-C-eEE
Confidence 99999975 22 22 456789999998 99997 67789999999999999999998 888887653 3 888
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
+.+.+++|.+|++|+.||.|++||++....... ...+|...|.++.|. + +..|++++.| .+++||++.
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~-~--~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFV-D--SSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccce---EecCCCCCEEEEEEe-C--CCEEEEEECCCEEEEEeCCC
Confidence 844467899999999999999999987653332 334788999999997 5 5678888855 999999863
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-19 Score=186.33 Aligned_cols=203 Identities=20% Similarity=0.310 Sum_probs=172.7
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1034 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
|...|.++.|++ .+..+++++.|++|++|+....+.+.+|.+|+ ..|....|+ +..+++++++|.||++++||++
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---~~Iy~a~~s-p~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---SCIYQAAFS-PHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---cEEEEEecC-CCCCCeEEEccCCceEEEEEec
Confidence 567799999998 55678889999999999999999999999999 999999997 7899999999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
. .|+.. .+..|...+.+ ++|+.-+. .+++|+.|+.||+||+|+-+.++..+.+|.-. |..+.+.+.+
T Consensus 179 ~-~gk~~------~i~ah~~Eil~----cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A-VRkvk~Sph~ 246 (311)
T KOG0277|consen 179 S-PGKFM------SIEAHNSEILC----CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA-VRKVKFSPHH 246 (311)
T ss_pred C-CCcee------EEEeccceeEe----ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE-EEEEecCcch
Confidence 7 45543 35778888888 99988555 55666889999999999987789999999887 9999554456
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
..+|++++.|=++||||...++..+. ....|+..|.++.|++. .+..+++++-| .+.+|+.
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ds~~e---~~~~HtEFv~g~Dws~~-~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQDSAIE---TVDHHTEFVCGLDWSLF-DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhhccccceEEecccccchhhhh---hhhccceEEeccccccc-cCceeeecccccceeeecc
Confidence 67999999999999999987764443 34467899999999998 67789999955 9999984
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=186.80 Aligned_cols=204 Identities=17% Similarity=0.267 Sum_probs=168.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|.+.|..+.|..++..+++++.|.+|++||.++|+++..++.|. +.|+++.-. .....++.+|+.||++|+||++
T Consensus 88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc---ceeeecCcc-ccCCeEEEecCCCceEEEEeec
Confidence 577889999999999999999999999999999999999999999 888888754 4455678899999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. ++. .+++. ....+++ +.|.+.+..+++||-|+.|++||++... ...++.+|.+. |+.| +.++.|
T Consensus 164 ~-k~~------~~t~~-~kyqltA----v~f~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~Dt-It~l-sls~~g 228 (338)
T KOG0265|consen 164 K-KEA------IKTFE-NKYQLTA----VGFKDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADT-ITGL-SLSRYG 228 (338)
T ss_pred c-cch------hhccc-cceeEEE----EEecccccceeeccccCceeeeccccCc-ceEEeecccCc-eeeE-EeccCC
Confidence 6 111 12222 2344666 8999999999999999999999999999 99999999997 9999 899999
Q ss_pred CEEEEEECCCcEEEEECCCC---CceeeeecCCCCCC--CCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTP---DMLVCSTRPHTQQV--ERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~---~~~v~~~~~~~gH~--~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
..+.+-+.|.+|++||+|-. +.++..+..+ .|. ......+|+|+ +..+..|+.| .+.+||..+
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknlL~cswsp~--~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNLLKCSWSPN--GTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhhcceeeccCC--CCccccccccceEEEeeccc
Confidence 99999999999999999853 2334444332 232 23567889999 8888888877 999999643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=190.55 Aligned_cols=197 Identities=16% Similarity=0.277 Sum_probs=174.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|-..|..+++++-.+|+++++.|+.|+.||++..+.++.+.+|- +.|.+++.. +.-..|+||+.|.++||||+++
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl---S~V~~L~lh--PTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL---SGVYCLDLH--PTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc---ceeEEEecc--ccceeEEecCCcceEEEeeecc
Confidence 44668999999999999999999999999999999999999999 899999995 6778999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
... ...+.+|...|.+ +.+++.+..+++|+.|++|++||++.++ ...++..|..+ |.++ +.+|...
T Consensus 267 -r~~------V~~l~GH~~~V~~----V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkks-vral-~lhP~e~ 332 (460)
T KOG0285|consen 267 -RAS------VHVLSGHTNPVAS----VMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKS-VRAL-CLHPKEN 332 (460)
T ss_pred -cce------EEEecCCCCccee----EEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccce-eeEE-ecCCchh
Confidence 111 2678999999998 8888999999999999999999999999 89999988887 9999 8899999
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.|++++.|. |+-|++..+..+. .+.+|++-|++++...+ + ++++|+++ .+.|||.+
T Consensus 333 ~fASas~dn-ik~w~~p~g~f~~----nlsgh~~iintl~~nsD--~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 333 LFASASPDN-IKQWKLPEGEFLQ----NLSGHNAIINTLSVNSD--G-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred hhhccCCcc-ceeccCCccchhh----ccccccceeeeeeeccC--c-eEEEcCCceEEEEEecC
Confidence 999999875 8999998777333 56788999999999887 4 77888876 99999975
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=191.00 Aligned_cols=199 Identities=15% Similarity=0.313 Sum_probs=169.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee--------CCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD--------NHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~--------~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
+.+.|..|+|||++|++|+-||.|.|||+.+|+.-..++ -+. ..|.|+.|+ .|...+++|+.||.|+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~FS--RDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISFS--RDSEMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEeec--ccHHHhhccCcCCcEE
Confidence 458899999999999999999999999999997654432 233 789999998 8999999999999999
Q ss_pred EEEcCCCCCcceEEeeeeec-cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l-~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
||++.+ |.+ ++.+ ..|...|++ +.|+.++..+++++.|.++|+..+.+++ ++..+.+|++. |+..
T Consensus 289 vWri~t--G~C-----lRrFdrAHtkGvt~----l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSy-vn~a- 354 (508)
T KOG0275|consen 289 VWRIET--GQC-----LRRFDRAHTKGVTC----LSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSY-VNEA- 354 (508)
T ss_pred EEEEec--chH-----HHHhhhhhccCeeE----EEEccCcchhhcccccceEEEeccccch-hHHHhcCcccc-ccce-
Confidence 999987 544 2444 489999999 9999999999999999999999999999 99999999997 9988
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
.+.++|+.+++++.||+|+||+..+.+ +..+++.. +...+|.++..-|. +..+++.+. .+++.+-++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~-~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPL-GTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchh-hhhhccCC-CCcccceeEEEcCC-CCceEEEEcCCCeEEEEec
Confidence 889999999999999999999999888 56666444 45678999999888 556666665 556666543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=206.46 Aligned_cols=203 Identities=15% Similarity=0.278 Sum_probs=178.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
..+|..++|||..++++++-..|.|++||+.-+.++..|..|. ++|..+.|. +.+.++++|++|-+|+||+...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd---GpVRgv~FH--~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDFH--PTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC---Cccceeeec--CCCCeEEecCCccEEEEEeccc-
Confidence 4679999999999999999999999999999999999999999 999999996 8899999999999999999976
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
.++ ..++.+|..-|+. +.|++.-..|+++|+|.+||||+..+.+ |+..+.+|... |.|. .|+|...+
T Consensus 83 -rrc-----lftL~GHlDYVRt----~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHY-VMcA-qFhptEDl 149 (1202)
T KOG0292|consen 83 -RRC-----LFTLLGHLDYVRT----VFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHY-VMCA-QFHPTEDL 149 (1202)
T ss_pred -cee-----hhhhccccceeEE----eeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceE-EEee-ccCCccce
Confidence 332 3678999999998 9999999999999999999999999999 99999999997 9998 89999999
Q ss_pred EEEEECCCcEEEEECCCCCc--------------------ee-----eeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1195 LAAGFVDGSVRLYDVRTPDM--------------------LV-----CSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~--------------------~v-----~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
+++++-|.+|||||+..-++ +. -......||...|+-++|+|. -..++||+||
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DD 227 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADD 227 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--cceEEecCCc
Confidence 99999999999999853110 00 001134689999999999999 7899999999
Q ss_pred -ceEEEeccc
Q 000836 1250 -LPSFSDLIY 1258 (1262)
Q Consensus 1250 -~I~~WDLry 1258 (1262)
.+++|.+.-
T Consensus 228 RqVKlWrmne 237 (1202)
T KOG0292|consen 228 RQVKLWRMNE 237 (1202)
T ss_pred ceeeEEEecc
Confidence 999998643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=190.07 Aligned_cols=213 Identities=18% Similarity=0.300 Sum_probs=172.7
Q ss_pred CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc----EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1033 RFEKGTKTALLQPF---SPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1033 ~~~~~V~sl~fspd---g~~Lasgs~dg~I~VWD~~tg~----~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
.|.+++.+++|.-- ...+++++.|.++++|.++.+. .+....+|. ..|-++... .+|..+++||.|.+
T Consensus 142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk---~~V~sVsv~--~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK---RSVDSVSVD--SSGTRFCSGSWDTM 216 (423)
T ss_pred cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc---cceeEEEec--CCCCeEEeecccce
Confidence 46688888888543 3369999999999999998773 333445888 899999985 89999999999999
Q ss_pred EEEEEcCCC-CC-----------------cceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 000836 1106 IRIWKDYDQ-KD-----------------KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1262)
Q Consensus 1106 IrIWD~~~~-~g-----------------~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~ 1167 (1262)
|+||+.... .. ....-++.-++.+|...|.+ +.|.+ ...++++|.|.+|+.||+.++
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~----V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS----VVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee----EEEcC-CCceEeecccceEEEEEeecc
Confidence 999993210 00 00111223567899999998 99987 889999999999999999999
Q ss_pred ceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1168 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1168 ~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
. ++.++.+... ++|+ ...+..++|++|+.|..+|+||.|++..-+-.. .+.||++||.++.|+|. +..+|++||
T Consensus 292 ~-~~~~~~~~ks--l~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-s~~gH~nwVssvkwsp~-~~~~~~S~S 365 (423)
T KOG0313|consen 292 G-LKSTLTTNKS--LNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-SLIGHKNWVSSVKWSPT-NEFQLVSGS 365 (423)
T ss_pred c-ceeeeecCcc--eeEe-ecccccceeeecCCCCceeecCCCCCCCceeEE-eeecchhhhhheecCCC-CceEEEEEe
Confidence 9 8988888765 8999 788899999999999999999999986433333 67799999999999999 788899999
Q ss_pred -CCceEEEecccccc
Q 000836 1248 -KCLPSFSDLIYFLA 1261 (1262)
Q Consensus 1248 -dd~I~~WDLryfla 1261 (1262)
|+.+++||+|--.|
T Consensus 366 ~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKA 380 (423)
T ss_pred cCCeEEEEEeccCCC
Confidence 56999999996543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-17 Score=179.91 Aligned_cols=197 Identities=21% Similarity=0.397 Sum_probs=166.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+...+.++.|++++.++++++.+|.|.+||..+++....+..|. ..|+++.|+ +++.++++++.||.|++||...
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~--~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT---DWVNSVAFS--PDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC---CcEEEEEEc--CcCCEEEEEcCCCcEEEEEccc
Confidence 44579999999998889888889999999999998888888887 789999997 6688888888899999999975
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
++. + ..+..|...+.+ +.|++++..+++++.++.|++||++..+ .+..+..|... +.++ .+.+++.
T Consensus 167 --~~~--~---~~~~~~~~~i~~----~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~ 232 (289)
T cd00200 167 --GKC--V---ATLTGHTGEVNS----VAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENG-VNSV-AFSPDGY 232 (289)
T ss_pred --ccc--c---eeEecCccccce----EEECCCcCEEEEecCCCcEEEEECCCCc-eecchhhcCCc-eEEE-EEcCCCc
Confidence 222 1 344567777888 9999999899999999999999999988 88888777775 9999 7788888
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
++++++.||.|++||+++++ ....+ .+|...|.+++|+++ +..|++++.+ .+++|+
T Consensus 233 ~~~~~~~~~~i~i~~~~~~~-~~~~~---~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTGE-CVQTL---SGHTNSVTSLAWSPD--GKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCce-eEEEc---cccCCcEEEEEECCC--CCEEEEecCCCeEEecC
Confidence 99998889999999998766 33333 367789999999999 8889988865 999996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=184.78 Aligned_cols=209 Identities=19% Similarity=0.310 Sum_probs=176.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|..+|+.++-....+.+.+++.|.+-+||.+++|+|+.++.+|. +.|++++|. +.+.+++|+|.|++-.||...
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikfh--~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT---GSVNSIKFH--NSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc---cceeeEEec--cccceEEEccCCcchHHHHHh
Confidence 456778888887778899999999999999999999999999999 999999997 688999999999999999821
Q ss_pred ------C--------C-------------------CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeE
Q 000836 1113 ------D--------Q-------------------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159 (1262)
Q Consensus 1113 ------~--------~-------------------~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~I 1159 (1262)
. + .....+-.++..+.+|...|.+ .+|-..+..+++++.|++.
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a----~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA----CDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe----hhhhcCcceeeeeeccccc
Confidence 0 0 0011233334566778877777 8898889999999999999
Q ss_pred EEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCC
Q 000836 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239 (1262)
Q Consensus 1160 rIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~ 1239 (1262)
.+||++++. .+..+.+|... .+.+ +-+|..+++++.+.|.+.|+||.|..- .....++||...|+++.|..+
T Consensus 297 nlwDVEtge-~v~~LtGHd~E-LtHc-stHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~d-- 368 (481)
T KOG0300|consen 297 NLWDVETGE-VVNILTGHDSE-LTHC-STHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTD-- 368 (481)
T ss_pred eeeeeccCc-eeccccCcchh-cccc-ccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecC--
Confidence 999999999 99999999886 8888 778899999999999999999999332 333467899999999999887
Q ss_pred CCEEEEecCC-ceEEEecccc
Q 000836 1240 PAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1240 g~~LaSgSdd-~I~~WDLryf 1259 (1262)
..+++||+| .+++||||.+
T Consensus 369 -d~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred -CceeecCCCceEEEeeeccc
Confidence 368999988 9999999876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-17 Score=211.02 Aligned_cols=203 Identities=13% Similarity=0.216 Sum_probs=165.3
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1033 RFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.|...|++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..|.++.|. .+++.+|++|+.||.|++||+
T Consensus 573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----~~v~~v~~~-~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK----ANICCVQFP-SESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC----CCeEEEEEe-CCCCCEEEEEeCCCeEEEEEC
Confidence 4667899999997 7889999999999999999999988888754 478999995 568999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeeEeecCCCCCCeeEE
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE------QQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~------~~~v~ti~~hs~~~VtsL 1185 (1262)
+. .+.. ...+.+|...|.. +.|. ++..+++++.|+.|++||++.. . ++..+.+|... +.++
T Consensus 648 ~~--~~~~----~~~~~~h~~~V~~----v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l~~~~gh~~~-i~~v 714 (793)
T PLN00181 648 RN--PKLP----LCTMIGHSKTVSY----VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PLHSFMGHTNV-KNFV 714 (793)
T ss_pred CC--CCcc----ceEecCCCCCEEE----EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ceEEEcCCCCC-eeEE
Confidence 76 2211 2356789888888 8886 6789999999999999999853 4 78889998876 8888
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCceee-eec--------CCCCCCCCeEEEEEecCCCCCEEEEecC-CceEEEe
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STR--------PHTQQVERVVGISFQPGLDPAKVNGTPK-CLPSFSD 1255 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~-~~~--------~~~gH~~~V~slafsp~~~g~~LaSgSd-d~I~~WD 1255 (1262)
.+++++.+|++|+.||.|++|+......... .+. ....|...|.+++|+++ +..|++|+. +.|++||
T Consensus 715 -~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~--~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 715 -GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ--SSTLVAANSTGNIKILE 791 (793)
T ss_pred -EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC--CCeEEEecCCCcEEEEe
Confidence 7889999999999999999999875531110 000 11245678999999999 888888885 4999999
Q ss_pred c
Q 000836 1256 L 1256 (1262)
Q Consensus 1256 L 1256 (1262)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 7
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=192.99 Aligned_cols=211 Identities=18% Similarity=0.302 Sum_probs=168.7
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE----------EEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe
Q 000836 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL----------LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~----------l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
.|.+.|+.+.+.|..+ ++++++..+.|.|||..+..- --++.+|. +.-++++|+ ......|++|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~---~eg~glsWn-~~~~g~Lls~~ 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE---KEGYGLSWN-RQQEGTLLSGS 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec---ccccccccc-cccceeEeecc
Confidence 3567899999998665 666778899999999976311 12677888 445679996 66778899999
Q ss_pred CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEE-EeCCCeEEEEeCC--CCceeeEeecCCC
Q 000836 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLE--KEQQMVNPIPSSS 1178 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Lls-gg~Dg~IrIWDlr--s~~~~v~ti~~hs 1178 (1262)
.|++|++||+.......+.+.+...+.+|...|.. ++|++....++. +|+|+.+.|||+| +.+ +.....+|.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~ 272 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHS 272 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccC
Confidence 99999999998733333444455677899999999 999997665554 4999999999999 555 778888888
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1179 ~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.. |.|+++.+.++.+||||+.|++|++||+|...... ..+.+|...|.+|.|+|+ ....|+|++.| .+.+||+.
T Consensus 273 ~~-vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l---h~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 273 AE-VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL---HTFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred Cc-eeEEEeCCCCCceEEeccCCCcEEEeechhcccCc---eeccCCCcceEEEEeCCC-CCceeEecccCCcEEEEecc
Confidence 87 99995555677899999999999999999877433 356688999999999999 77888888855 99999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=200.85 Aligned_cols=198 Identities=16% Similarity=0.282 Sum_probs=169.4
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE---EE------EeeCCCCCCCCeEEEEEeecCCCcEEEEEeC
Q 000836 1033 RFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTL---LN------SFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg~~---l~------~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~ 1102 (1262)
.|.+.|.+++++..+ .++++++.|++|++|++...+. .. +-..|. ..|++++.+ ++..+++|||.
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd---KdIN~Vaia--~ndkLiAT~Sq 483 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD---KDINCVAIA--PNDKLIATGSQ 483 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc---ccccceEec--CCCceEEeccc
Confidence 466789999997644 5899999999999999986211 11 223466 889999997 78899999999
Q ss_pred CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCe
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~V 1182 (1262)
|.+.+||++.. ..+. .++.+|...|++ |.|++.+..++++|.|++|+||.+.+.. |+++|.+|... |
T Consensus 484 DktaKiW~le~----~~l~---~vLsGH~RGvw~----V~Fs~~dq~laT~SgD~TvKIW~is~fS-ClkT~eGH~~a-V 550 (775)
T KOG0319|consen 484 DKTAKIWDLEQ----LRLL---GVLSGHTRGVWC----VSFSKNDQLLATCSGDKTVKIWSISTFS-CLKTFEGHTSA-V 550 (775)
T ss_pred ccceeeecccC----ceEE---EEeeCCccceEE----EEeccccceeEeccCCceEEEEEeccce-eeeeecCccce-e
Confidence 99999999974 3333 678999999999 9999999999999999999999999999 99999999998 8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
..+ .|-.+|..|++|+.||-+++|++.+.++ .+ ++.+|+..|++++.++. ..+++||+.| .|.+|.
T Consensus 551 lra-~F~~~~~qliS~~adGliKlWnikt~eC-~~---tlD~H~DrvWaL~~~~~--~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 551 LRA-SFIRNGKQLISAGADGLIKLWNIKTNEC-EM---TLDAHNDRVWALSVSPL--LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred Eee-eeeeCCcEEEeccCCCcEEEEeccchhh-hh---hhhhccceeEEEeecCc--cceeEecCCCeEEEEee
Confidence 888 6777999999999999999999999883 32 66788999999999999 7799998855 888885
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-18 Score=204.34 Aligned_cols=201 Identities=20% Similarity=0.333 Sum_probs=159.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------------
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE---------------------------------------------- 1066 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t---------------------------------------------- 1066 (1262)
.|.+.|+++.|++||+|||+||+|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7889999999999999999999999999998754
Q ss_pred --------------CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCC
Q 000836 1067 --------------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1262)
Q Consensus 1067 --------------g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~ 1132 (1262)
.++++.|.+|. +.|.+|.|+ ..++|+++|.|.+||+|++.. .++ ++ ...|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt---~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~--~~C-----L~-~F~Hnd 410 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT---ADILDLSWS---KNNFLLSSSMDKTVRLWHPGR--KEC-----LK-VFSHND 410 (712)
T ss_pred CccccCCCccccccccchhhhhccc---hhheecccc---cCCeeEeccccccEEeecCCC--cce-----ee-EEecCC
Confidence 01223356777 889999997 678999999999999999965 222 12 346899
Q ss_pred cccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000836 1133 GVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1133 ~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs 1211 (1262)
-|++ |+|+| +..++++|+-|+.||||++...+ .+.-...+ +- ||++ ++.|+|...+.|+-+|.+++|+++.
T Consensus 411 fVTc----VaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~W~Dl~-~l-ITAv-cy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 411 FVTC----VAFNPVDDRYFISGSLDGKVRLWSISDKK-VVDWNDLR-DL-ITAV-CYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred eeEE----EEecccCCCcEeecccccceEEeecCcCe-eEeehhhh-hh-heeE-EeccCCceEEEEEeccEEEEEEccC
Confidence 9999 99999 66689999999999999999888 55544555 43 9999 9999999999999999999999986
Q ss_pred CCceeeeecC--C----CCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1212 PDMLVCSTRP--H----TQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1212 ~~~~v~~~~~--~----~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
.+ +...+.. . ..|. .|+++.|.|....+.|||..|..|+++|++
T Consensus 483 lk-~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 483 LK-LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred Ce-EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 65 3222211 1 1133 799999999833346777777799999983
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=174.63 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=174.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|..+++.+.|+.+|.+|.+++.|.++.||-..+|+++-++.+|. +.|+++... .+...++||+.|.++++||+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt---GavW~~Did--~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT---GAVWCCDID--WDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC---ceEEEEEec--CCcceeeeccccceeEEEEc
Confidence 4588899999999999999999999999999999999999999999 999999996 78899999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-----CCeEEEEeCC-------CCceeeEeecCCCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLE-------KEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-----Dg~IrIWDlr-------s~~~~v~ti~~hs~ 1179 (1262)
.+ |+... .+ .-...|+. +.|+.+|.+++++.+ .+.|.++|++ .+. ++..++.+.+
T Consensus 82 ~t--Gk~la-----~~-k~~~~Vk~----~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~s 148 (327)
T KOG0643|consen 82 ET--GKQLA-----TW-KTNSPVKR----VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDS 148 (327)
T ss_pred CC--CcEEE-----Ee-ecCCeeEE----EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCcc
Confidence 87 55421 12 23456777 899998888887744 5779999998 455 8999999987
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
. ++.+ .|.+-+..|++|..||+|.+||.+++...+. .-+.|+..|+.+.++++ ..++++||.| +.++||.+.
T Consensus 149 k-it~a-~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~---s~~~h~~~Ind~q~s~d--~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 149 K-ITSA-LWGPLGETIIAGHEDGSISIYDARTGKELVD---SDEEHSSKINDLQFSRD--RTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred c-eeee-eecccCCEEEEecCCCcEEEEEcccCceeee---chhhhccccccccccCC--cceEEecccCccceeeeccc
Confidence 6 8888 7899999999999999999999999885653 33467789999999999 9999999977 999999865
Q ss_pred c
Q 000836 1259 F 1259 (1262)
Q Consensus 1259 f 1259 (1262)
+
T Consensus 222 l 222 (327)
T KOG0643|consen 222 L 222 (327)
T ss_pred e
Confidence 3
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=205.37 Aligned_cols=199 Identities=17% Similarity=0.324 Sum_probs=164.0
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1038 TKTALLQP-FSPIVVAADENERIKIWNYEE---DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1038 V~sl~fsp-dg~~Lasgs~dg~I~VWD~~t---g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+..|+|++ +.++|||++..|.|.|||+.. .+.+..|..|. ..|+++.|+ .....+|++||.||+|++||++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~---Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE---RSANKLDFH-STEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc---cceeeeeec-cCCccEEEecCCCceEEEEeeec
Confidence 55677876 677999999999999999987 56777899999 899999996 78889999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~-Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
.+.. .++.+....|+. |.|+|..+. ++++.+.|.+++||+|....+...+.+|.+. |.|+ .|+|++
T Consensus 166 ~~S~-------~t~~~nSESiRD----V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-V~c~-nwhPnr 232 (839)
T KOG0269|consen 166 KKSK-------STFRSNSESIRD----VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-VLCL-NWHPNR 232 (839)
T ss_pred cccc-------ccccccchhhhc----eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-eEEE-eecCCC
Confidence 2221 345567778999 999997665 5555778999999999977689999999997 9999 889999
Q ss_pred CEEEEEECCCcEEEEECCCCC-ceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CC-ceEEEeccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KC-LPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~-~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd-~I~~WDLry 1258 (1262)
.+||||+.|+.|+|||....+ ....++.+ ..+|..|.|-|. ...+|++++ .+ .|.+||+|-
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInT----iapv~rVkWRP~-~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHTINT----IAPVGRVKWRPA-RSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeEEee----cceeeeeeeccC-ccchhhhhhccccceEEEEeecc
Confidence 999999999999999998654 22233322 378999999999 667888888 33 999999963
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=197.99 Aligned_cols=205 Identities=18% Similarity=0.197 Sum_probs=154.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-------------EEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l-------------~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
|.....++++..+++++.+.....|+...+..+ ..+.+|. +.|++++|+ +.++.+|++|+.||
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~---~~V~~v~fs-P~d~~~LaSgS~Dg 98 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE---GPIIDVAFN-PFDPQKLFTASEDG 98 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC---CCEEEEEEc-CCCCCEEEEEeCCC
Confidence 455556667666666666666667765433222 1356777 899999997 33788999999999
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
+|+|||+...............+.+|...|.+ ++|+|.+ +.|++++.|+.|+|||+++++ .+..+.+|.+. |.
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~----l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~-V~ 172 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI----VSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQ-IT 172 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEE----EEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCc-eE
Confidence 99999997521111111223567889999988 9999976 588889999999999999999 99999999887 99
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCC-eEEEEEecCCCCCEEEEec-----CCceEEEecc
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER-VVGISFQPGLDPAKVNGTP-----KCLPSFSDLI 1257 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~-V~slafsp~~~g~~LaSgS-----dd~I~~WDLr 1257 (1262)
++ .|+++|.+|++|+.||.|+|||+++++ .+..+ .+|.+. +..+.|.++ +..+++++ ++.+++||++
T Consensus 173 sl-a~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl---~~H~~~~~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 173 SL-EWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSV---EAHASAKSQRCLWAKR--KDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EE-EEECCCCEEEEecCCCEEEEEECCCCc-EEEEE---ecCCCCcceEEEEcCC--CCeEEEEecCCCCCCeEEEEeCC
Confidence 99 888999999999999999999999887 34333 344443 457788888 55666543 3489999998
Q ss_pred cc
Q 000836 1258 YF 1259 (1262)
Q Consensus 1258 yf 1259 (1262)
.+
T Consensus 246 ~~ 247 (493)
T PTZ00421 246 KM 247 (493)
T ss_pred CC
Confidence 53
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-18 Score=193.34 Aligned_cols=199 Identities=19% Similarity=0.303 Sum_probs=163.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|..+|..++|+++|..+++++.|+.|++||+++|+++.+|.... .+++++|. +.+.+.+++|..|+.|+.||++.
T Consensus 257 H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~----~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 257 HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK----VPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC----CceeeecC-CCCCcEEEEecCCCcEEEEeccc
Confidence 45679999999999999999999999999999999999997655 78999995 44459999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceee----------------------
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV---------------------- 1171 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v---------------------- 1171 (1262)
++ ++ +.+..|.+.|.. +.|-+.+...+++++|+.++||+.+.+- .+
T Consensus 332 --~k--vv---qeYd~hLg~i~~----i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 332 --GK--VV---QEYDRHLGAILD----ITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred --hH--HH---HHHHhhhhheee----eEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCe
Confidence 43 33 677788888988 8888999999999999999999987653 11
Q ss_pred ------------------------EeecCCCCC-CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCC
Q 000836 1172 ------------------------NPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1262)
Q Consensus 1172 ------------------------~ti~~hs~~-~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~ 1226 (1262)
..+.+|... .-..+ .++++|.+|++|..||.|.+||.++-+ ++. .++.|.
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v-~fSpDG~~l~SGdsdG~v~~wdwkt~k-l~~---~lkah~ 474 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV-DFSPDGRTLCSGDSDGKVNFWDWKTTK-LVS---KLKAHD 474 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeE-EEcCCCCeEEeecCCccEEEeechhhh-hhh---ccccCC
Confidence 112233222 12334 689999999999999999999999877 443 445677
Q ss_pred CCeEEEEEecCCCCCEEEEec-CCceEEEe
Q 000836 1227 ERVVGISFQPGLDPAKVNGTP-KCLPSFSD 1255 (1262)
Q Consensus 1227 ~~V~slafsp~~~g~~LaSgS-dd~I~~WD 1255 (1262)
++++++.|+|. ....+||++ ++.|++||
T Consensus 475 ~~ci~v~wHP~-e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPV-EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCC-CcceeEecccCceeEecC
Confidence 99999999999 667888988 55999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=173.68 Aligned_cols=198 Identities=15% Similarity=0.213 Sum_probs=164.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|+..|..++.+.|+..+++|+.|..|.+||+++|+.++.|.+|. +.|+.++|. .+...+++||.|.++|+||.+
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~---aqVNtV~fN--eesSVv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL---AQVNTVRFN--EESSVVASGSFDSSVRLWDCR 131 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc---ceeeEEEec--CcceEEEeccccceeEEEEcc
Confidence 477889999999999999999999999999999999999999999 999999995 678899999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. ...+.+ +.+......|.+ +.. .+..|++|+.||++|.||+|.++ ......+| +|+|+ ++++++
T Consensus 132 S--~s~ePi---Qildea~D~V~S----i~v--~~heIvaGS~DGtvRtydiR~G~-l~sDy~g~---pit~v-s~s~d~ 195 (307)
T KOG0316|consen 132 S--RSFEPI---QILDEAKDGVSS----IDV--AEHEIVAGSVDGTVRTYDIRKGT-LSSDYFGH---PITSV-SFSKDG 195 (307)
T ss_pred c--CCCCcc---chhhhhcCceeE----EEe--cccEEEeeccCCcEEEEEeecce-eehhhcCC---cceeE-EecCCC
Confidence 7 333333 667777777777 444 36788999999999999999998 66665553 49999 899999
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE--EEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG--ISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s--lafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+..++|+.|+++|+.|..+++ +.. .+.||.+.=.. .++... ..++++||+| .+.||||.
T Consensus 196 nc~La~~l~stlrLlDk~tGk-lL~---sYkGhkn~eykldc~l~qs--dthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGK-LLK---SYKGHKNMEYKLDCCLNQS--DTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred CEEEEeeccceeeecccchhH-HHH---Hhcccccceeeeeeeeccc--ceeEEeccCCceEEEEEec
Confidence 999999999999999999988 443 44455554333 344444 6789999966 99999985
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=194.74 Aligned_cols=207 Identities=16% Similarity=0.259 Sum_probs=167.6
Q ss_pred ccccccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1027 IACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1027 ~~~w~~~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~t-g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
+..|. .|...|+++.|.| .+.+|++|+-|+.|+||++.. +.++++|.+|+ ..|.+++|+ .+|..++++|.|+
T Consensus 207 ~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s--~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFN--NCGTSFLSASFDR 280 (503)
T ss_pred eeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhcc--ccCCeeeeeecce
Confidence 33443 5678899999999 888999999999999999876 89999999999 899999997 7999999999999
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCc-ccccceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCe
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPG-VRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~-V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~V 1182 (1262)
.|++||.++ |++. ..-+... +++ +.|+|++ +.+++|+.|+.|+.||+|+++ .++++..|-+. |
T Consensus 281 ~lKlwDtET--G~~~-------~~f~~~~~~~c----vkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~-i 345 (503)
T KOG0282|consen 281 FLKLWDTET--GQVL-------SRFHLDKVPTC----VKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGA-I 345 (503)
T ss_pred eeeeecccc--ceEE-------EEEecCCCcee----eecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhh-e
Confidence 999999988 5442 1122222 334 9999998 678888999999999999999 99999988886 9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee-------------------------------ee-----------ec
Q 000836 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV-------------------------------CS-----------TR 1220 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v-------------------------------~~-----------~~ 1220 (1262)
..+ .|-++|..|++.+.|++|+||+.+.+-.+. .. .+
T Consensus 346 ~~i-~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 346 LDI-TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eee-EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999 777899999999999999999987532100 00 00
Q ss_pred CCCCCC--CCeEEEEEecCCCCCEEEEecC-CceEEEecc
Q 000836 1221 PHTQQV--ERVVGISFQPGLDPAKVNGTPK-CLPSFSDLI 1257 (1262)
Q Consensus 1221 ~~~gH~--~~V~slafsp~~~g~~LaSgSd-d~I~~WDLr 1257 (1262)
.+.||. +.-..+.|+|+ |.+|++|+. +.+.+||.+
T Consensus 425 ~feGh~vaGys~~v~fSpD--G~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPD--GRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhcceeccCceeeEEEcCC--CCeEEeecCCccEEEeech
Confidence 122332 34578999999 999999984 599999975
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=186.17 Aligned_cols=200 Identities=18% Similarity=0.273 Sum_probs=173.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
-++.++...+..+.+++|+.|.++.++|..+++.+..|++|. ..|+++.++ ++...+++++.|..|+||....+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~~--~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT---KKITSVKFH--KDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc---eEEEEEEec--cchhheeecCCcceEEeecccccc
Confidence 457888888887899999999999999999999999999999 899999996 788899999999999999997622
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC-CCCCeeEEEEEcCCCCE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h-s~~~VtsLa~~s~~g~l 1194 (1262)
.. .....|...|+. +.-++.|.+++++++||.+...|++++. ++...... ++-.+++. .++|+|.+
T Consensus 295 -~~------~~~~~h~~~V~~----ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~-~fHpDgLi 361 (506)
T KOG0289|consen 295 -EP------TSSRPHEEPVTG----LSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSA-AFHPDGLI 361 (506)
T ss_pred -Cc------ccccccccccee----eeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEe-eEcCCceE
Confidence 22 345678889998 8889999999999999999999999999 66655543 33348888 89999999
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
|.+|..||.|+|||+.++.... .+.+|.++|..++|+.+ |.+|+++++| .+++||||..
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a----~Fpght~~vk~i~FsEN--GY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVA----KFPGHTGPVKAISFSEN--GYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred EeccCCCceEEEEEcCCccccc----cCCCCCCceeEEEeccC--ceEEEEEecCCeEEEEEehhh
Confidence 9999999999999999877332 56789999999999999 9999999977 6999999964
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=187.08 Aligned_cols=209 Identities=16% Similarity=0.176 Sum_probs=173.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.++|.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+..|- ..||++.|+ .||.+|+|||.||.|.+|.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---Q~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---QSITCLKFS--DDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---cceeEEEEe--CCCcEEEecCCCccEEEEEEEee
Confidence 4679999999999999999899999999999999999999998 899999998 89999999999999999997531
Q ss_pred --CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1115 --KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1115 --~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
......+.+++.+.+|.-.|+++ .+.+.+....++++|.|.+||+||+..+. .+.++..... +.++ ..+|.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl--~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp~s--i~av-~lDpae 229 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDL--QIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFPSS--IKAV-ALDPAE 229 (476)
T ss_pred cccccCCCccceeeeccCcceeEEE--EecCCCccceEEEecCCceEEEEEeccce-eeEEEecCCc--ceeE-EEcccc
Confidence 11111334457888999999882 24444556799999999999999999999 8888877654 8999 788999
Q ss_pred CEEEEEECCCcEEEEECCCCC------------ceeeeecCCCCCCC--CeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPD------------MLVCSTRPHTQQVE--RVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~------------~~v~~~~~~~gH~~--~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
+.+..|+.+|.|.+.++.... .....++.+.||.+ .|+|++.+-+ |..|++|+.+ .+++||.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEec
Confidence 999999999999988875422 11122335567887 9999999999 9999999955 9999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=195.19 Aligned_cols=202 Identities=18% Similarity=0.281 Sum_probs=172.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~-h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
...|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.. |. ..|.+++|. +..+.+|+.||.|.++|++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~---~rvg~laW~----~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA---SRVGSLAWN----SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC---ceeEEEecc----CceEEEecCCCcEEEEEEec
Confidence 46799999999999999999999999999999999999998 77 899999993 68999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
. + ..+ ..+.+|...|.. +.|++++.++++||.|+.+.|||..... +...+..|... |.++++.+....
T Consensus 290 ~--~-~~~---~~~~~H~qeVCg----Lkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aA-VKA~awcP~q~~ 357 (484)
T KOG0305|consen 290 S--Q-HVV---STLQGHRQEVCG----LKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAA-VKALAWCPWQSG 357 (484)
T ss_pred c--h-hhh---hhhhcccceeee----eEECCCCCeeccCCCccceEeccCCCcc-ccEEEecccee-eeEeeeCCCccC
Confidence 2 2 122 347899999999 9999999999999999999999998888 99999999997 999966666778
Q ss_pred EEEEEEC--CCcEEEEECCCCCce-------------------------------eeee--------cCCCCCCCCeEEE
Q 000836 1194 QLAAGFV--DGSVRLYDVRTPDML-------------------------------VCST--------RPHTQQVERVVGI 1232 (1262)
Q Consensus 1194 lLatGs~--DGsVrIWDlrs~~~~-------------------------------v~~~--------~~~~gH~~~V~sl 1232 (1262)
+||+|++ |+.|++||+.++..+ +..| ..+.+|...|..+
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYL 437 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEE
Confidence 9999764 899999999764311 0111 1234789999999
Q ss_pred EEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1233 SFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1233 afsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+++|+ |..+++|+.| +++||++-
T Consensus 438 a~SPd--g~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 438 ALSPD--GETIVTGAADETLRFWNLF 461 (484)
T ss_pred EECCC--CCEEEEecccCcEEecccc
Confidence 99999 8899999866 99999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=195.45 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=145.4
Q ss_pred EeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCc-ceEEeeeeeccCCC
Q 000836 1053 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK-QKLVTAFSSIQGHK 1131 (1262)
Q Consensus 1053 gs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~-~~lvsa~~~l~~h~ 1131 (1262)
|+..+.|++|+..+...+..+.+|. +.|++++|+ +.++.+|++|+.||+|+|||+...... ..+......+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~---~~V~~lafs-P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT---SSILDLQFN-PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC---CCEEEEEEc-CCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 5567889999998888888999998 899999997 345789999999999999999752110 11111224567899
Q ss_pred CcccccceeEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000836 1132 PGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1132 ~~V~sv~l~v~wsp~~~~L-lsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
..|.+ +.|+|++..+ +++|.|+.|++||+++++ .+..+.. ... |+++ .|+++|.+|++++.|+.|+|||+|
T Consensus 126 ~~V~s----Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~~-~~~-V~Sl-swspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 126 KKISI----IDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQINM-PKK-LSSL-KWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CcEEE----EEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEec-CCc-EEEE-EECCCCCEEEEEecCCEEEEEECC
Confidence 88988 9999988765 577899999999999998 7777763 344 9999 889999999999999999999999
Q ss_pred CCCceeeeecCCCCCCCCeEE-----EEEecCCCCCEEEEec-CC----ceEEEeccc
Q 000836 1211 TPDMLVCSTRPHTQQVERVVG-----ISFQPGLDPAKVNGTP-KC----LPSFSDLIY 1258 (1262)
Q Consensus 1211 s~~~~v~~~~~~~gH~~~V~s-----lafsp~~~g~~LaSgS-dd----~I~~WDLry 1258 (1262)
+++ .+..+ .+|.+.+.. ..|+++ +.+|+|++ ++ .+++||++.
T Consensus 198 sg~-~i~tl---~gH~g~~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 198 KQE-IASSF---HIHDGGKNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCc-EEEEE---ecccCCceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCC
Confidence 887 34333 355555433 234567 66777766 33 599999985
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=188.87 Aligned_cols=198 Identities=15% Similarity=0.255 Sum_probs=165.3
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~-Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
...|.+++|+|..++ +|+++ .-.+.+|+..+.....+|.... ..|++++|- .||.+|++|...|.|+|||..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---~~v~s~~fR--~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---DVVYSVDFR--SDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---cceeEEEee--cCCeEEEccCCcCcEEEecccc
Confidence 367999999996663 44444 5779999999877777666555 789999996 8999999999999999999543
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
+. .++.+.+|+.++.. +.|+++++.+++. ++|+++++||+.+.. ....+.+|++. |.|.++.+.++
T Consensus 100 ---r~----iLR~~~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDY-VR~g~~~~~~~ 166 (487)
T KOG0310|consen 100 ---RV----ILRQLYAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDY-VRCGDISPAND 166 (487)
T ss_pred ---HH----HHHHHhhccCceeE----EEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcce-eEeeccccCCC
Confidence 11 25788999999998 8999988866655 678899999999998 66689999998 99996666678
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
+++++|+.||.||+||+|.....+..+ .|..+|-++.+-|. |..+++++.+.+++||+.
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lps--gs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPS--GSLIASAGGNSVKVWDLT 225 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCC--CCEEEEcCCCeEEEEEec
Confidence 899999999999999999875444444 46799999999999 899999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=182.77 Aligned_cols=190 Identities=14% Similarity=0.275 Sum_probs=158.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+..+|.|+.+. +..+++|..|++|+|||..+..++..+.+|+ +.|.|+.| +...+++||+|.+|+|||..+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy----d~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHT---GSVLCLQY----DERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCC---CcEEeeec----cceEEEecCCCceEEEEeccC
Confidence 34679998885 5679999999999999999999999999999 89999999 456999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeEeecCCCCCCeeEEEEEcCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~--~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
+++ .+++-+|...|.. +.|+ ++++++++.|++|.+||+.... .+.+.+.+|..+ |+.+ .+ +
T Consensus 267 --ge~-----l~tlihHceaVLh----lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvV-df--d 329 (499)
T KOG0281|consen 267 --GEP-----LNTLIHHCEAVLH----LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVV-DF--D 329 (499)
T ss_pred --Cch-----hhHHhhhcceeEE----EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeee-cc--c
Confidence 544 3678889888877 6664 6899999999999999998765 145566788776 8888 33 5
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.++++++++|.+|++|++.+.+ .++ +..+|...|.|+.+. ++.++|||.| +|++||..
T Consensus 330 ~kyIVsASgDRTikvW~~st~e-fvR---tl~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCE-FVR---TLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred cceEEEecCCceEEEEecccee-eeh---hhhcccccceehhcc----CeEEEecCCCceEEEEecc
Confidence 6799999999999999999888 554 455777888887664 6799999966 99999974
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-17 Score=172.29 Aligned_cols=215 Identities=15% Similarity=0.196 Sum_probs=172.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-----CCeEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-----NGNIR 1107 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-----DG~Ir 1107 (1262)
.|.+.|+|++.+.+.+++++|+.|.++++||+++|+++..++... .|..+.|+ .+|++++...+ .+.|.
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~----~Vk~~~F~--~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS----PVKRVDFS--FGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----eeEEEeec--cCCcEEEEEehhhcCcceEEE
Confidence 467889999999999999999999999999999999999997654 79999997 78888777654 46899
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
++|++.......--.++..+..+.+.++. +-|.+.+..|++|.+||.|.+||++++++.+.....|... |+.| .
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~----a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-Ind~-q 197 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITS----ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-INDL-Q 197 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceee----eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-cccc-c
Confidence 99998522111111123455566677777 8899999999999999999999999986477777888886 9999 8
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCcee---------------------------------------------------
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLV--------------------------------------------------- 1216 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v--------------------------------------------------- 1216 (1262)
++++..+|++|+.|.+-++||.++.+.+.
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred ccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99999999999999999999997532100
Q ss_pred eeecCCCCCCCCeEEEEEecCCCCCEEEEecCC---ceEEEecccccc
Q 000836 1217 CSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC---LPSFSDLIYFLA 1261 (1262)
Q Consensus 1217 ~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd---~I~~WDLryfla 1261 (1262)
..+...++|-++|++|+|||+ |...+||++| .+..+|..||-+
T Consensus 278 EEigrvkGHFGPINsvAfhPd--GksYsSGGEDG~VR~h~Fd~~YF~~ 323 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPD--GKSYSSGGEDGYVRLHHFDSNYFDF 323 (327)
T ss_pred HHhccccccccCcceeEECCC--CcccccCCCCceEEEEEeccchhhe
Confidence 001112458899999999999 9999999966 667788888753
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=193.72 Aligned_cols=211 Identities=11% Similarity=0.235 Sum_probs=174.1
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg----~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
.-..|...|.+++....|.+|++|+.|.++++|.++++ .++....+|+ ..|.+++++ .....+|+++|.|++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~---~svgava~~-~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT---NSVGAVAGS-KLGASFFVSVSQDCT 435 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc---cccceeeec-ccCccEEEEecCCce
Confidence 33457778899986667789999999999999988544 3455567788 899999996 556689999999999
Q ss_pred EEEEEcCCCCCc--ceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1106 IRIWKDYDQKDK--QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1106 IrIWD~~~~~g~--~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
+++|++..+... +.....-.+...|...|++ ++.+|++..+++||.|++.+||++.... ...++.+|..+ |.
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~----Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RG-vw 509 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINC----VAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRG-VW 509 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccc----eEecCCCceEEecccccceeeecccCce-EEEEeeCCccc-eE
Confidence 999999752211 1111111234568889999 9999999999999999999999999888 99999999998 99
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
|+ .|++..++++|+++|++|+||.+.+.. +. +++.||...|..+.|-.+ +..|+|++ ++.+++|++.
T Consensus 510 ~V-~Fs~~dq~laT~SgD~TvKIW~is~fS-Cl---kT~eGH~~aVlra~F~~~--~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 510 CV-SFSKNDQLLATCSGDKTVKIWSISTFS-CL---KTFEGHTSAVLRASFIRN--GKQLISAGADGLIKLWNIK 577 (775)
T ss_pred EE-EeccccceeEeccCCceEEEEEeccce-ee---eeecCccceeEeeeeeeC--CcEEEeccCCCcEEEEecc
Confidence 99 899999999999999999999999877 33 367789999999999999 88888877 5699999974
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=179.99 Aligned_cols=206 Identities=18% Similarity=0.300 Sum_probs=154.5
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCC----------------CcEEEEeeCCCCCCCCeEEEEEeecCCCcE
Q 000836 1035 EKGTKTALLQPF--SPIVVAADENERIKIWNYEE----------------DTLLNSFDNHDFPDKGISKLCLVNELDVSL 1096 (1262)
Q Consensus 1035 ~~~V~sl~fspd--g~~Lasgs~dg~I~VWD~~t----------------g~~l~~~~~h~~~~~~ItsL~fsn~~dg~l 1096 (1262)
.+.++.+.-.+. +.+.++-++.|.|.|||+.. .+.+.++.+|. +.=..++|++ .....
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---~EGy~LdWSp-~~~g~ 226 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---GEGYGLDWSP-IKTGR 226 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---ccceeeeccc-ccccc
Confidence 344555555554 45667777899999999863 24667788888 5668899984 44456
Q ss_pred EEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-e-eeEe
Q 000836 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQ-Q-MVNP 1173 (1262)
Q Consensus 1097 LaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~-~-~v~t 1173 (1262)
|++|..-+.|++|...+ +.... .-+.+.+|+..|-. ++|+|... .+++||.||+|+|||+|.+. . ++.+
T Consensus 227 LlsGDc~~~I~lw~~~~--g~W~v--d~~Pf~gH~~SVED----LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST--GSWKV--DQRPFTGHTKSVED----LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred cccCccccceEeeeecc--Cceee--cCccccccccchhh----hccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 88999999999999976 43321 13456789999999 99999655 56666889999999999983 1 4444
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCC--ceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCce
Q 000836 1174 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD--MLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLP 1251 (1262)
Q Consensus 1174 i~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~--~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I 1251 (1262)
..|.+. |+.| +|+.+-.+|++|+.||+++|||+|.-+ .++. .+..|..+|++|.|+|...+.+.++|+++.|
T Consensus 299 -kAh~sD-VNVI-SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA---~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 299 -KAHNSD-VNVI-SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA---TFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred -eccCCc-eeeE-EccCCcceeeecCCCceEEEEEhhhccCCCcce---eEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 777776 9999 777777799999999999999999755 2332 4556789999999999943444455556799
Q ss_pred EEEeccc
Q 000836 1252 SFSDLIY 1258 (1262)
Q Consensus 1252 ~~WDLry 1258 (1262)
.+|||.-
T Consensus 373 tiWDlsv 379 (440)
T KOG0302|consen 373 TIWDLSV 379 (440)
T ss_pred EEEEeec
Confidence 9999853
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=176.56 Aligned_cols=205 Identities=16% Similarity=0.250 Sum_probs=168.5
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------C------cEEEEeeCCCCCCCCeEEEEEeecC
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------D------TLLNSFDNHDFPDKGISKLCLVNEL 1092 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t------------g------~~l~~~~~h~~~~~~ItsL~fsn~~ 1092 (1262)
-..|...+.+-+|++||.++++|+.|..|+|.|++. | -.++++..|. ..|+++.|. +
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~---devn~l~FH--P 182 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV---DEVNDLDFH--P 182 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc---Ccccceeec--c
Confidence 355778899999999999999999999999999972 1 3567788888 899999996 7
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 000836 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1172 (1262)
Q Consensus 1093 dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ 1172 (1262)
...+|++|+.|++|++||... .....+++.+++ ...|++ +.|+|.|.++++|.+-.++++||+.+-+ |..
T Consensus 183 re~ILiS~srD~tvKlFDfsK----~saKrA~K~~qd-~~~vrs----iSfHPsGefllvgTdHp~~rlYdv~T~Q-cfv 252 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSK----TSAKRAFKVFQD-TEPVRS----ISFHPSGEFLLVGTDHPTLRLYDVNTYQ-CFV 252 (430)
T ss_pred hhheEEeccCCCeEEEEeccc----HHHHHHHHHhhc-cceeee----EeecCCCceEEEecCCCceeEEecccee-Eee
Confidence 789999999999999999954 222223344433 345777 9999999999999999999999999998 766
Q ss_pred eec---CCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeec-CCCCCCCCeEEEEEecCCCCCEEEEecC
Q 000836 1173 PIP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKVNGTPK 1248 (1262)
Q Consensus 1173 ti~---~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~-~~~gH~~~V~slafsp~~~g~~LaSgSd 1248 (1262)
.-. .|.+. |+++ .+++.|++.++|+.||.|++||--+++ ++.++. .|. ...|.+..|..+ |+++++.+.
T Consensus 253 sanPd~qht~a-i~~V-~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~--gsevcSa~Ftkn--~kyiLsSG~ 325 (430)
T KOG0640|consen 253 SANPDDQHTGA-ITQV-RYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHG--GSEVCSAVFTKN--GKYILSSGK 325 (430)
T ss_pred ecCcccccccc-eeEE-EecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcC--CceeeeEEEccC--CeEEeecCC
Confidence 543 46665 9999 899999999999999999999988777 555552 233 467999999999 999999886
Q ss_pred C-ceEEEecc
Q 000836 1249 C-LPSFSDLI 1257 (1262)
Q Consensus 1249 d-~I~~WDLr 1257 (1262)
| .+++|.+-
T Consensus 326 DS~vkLWEi~ 335 (430)
T KOG0640|consen 326 DSTVKLWEIS 335 (430)
T ss_pred cceeeeeeec
Confidence 6 99999873
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=184.18 Aligned_cols=212 Identities=14% Similarity=0.188 Sum_probs=162.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|..+|.-+.|+||+++|++++.+..+.+||+.+|.+...+.... +..+++.+|. +||..+++|+.|+++..||.
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--GFSVSSCAWC--PDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc--CCCcceeEEc--cCCceeEecCCCCcEEEecC
Confidence 3567889999999999999999999999999999999988887653 3689999997 89999999999999999998
Q ss_pred CCC--------------------CCcceEEee----e----------eeccCCCCcccccceeEEEcCCCCEEEEEeCCC
Q 000836 1112 YDQ--------------------KDKQKLVTA----F----------SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157 (1262)
Q Consensus 1112 ~~~--------------------~g~~~lvsa----~----------~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg 1157 (1262)
... +|+.-+... . +.+......|++ +..+.++.+.++.=.+.
T Consensus 342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its----~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITS----FSISKDGKLALVNLQDQ 417 (519)
T ss_pred CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeE----EEEcCCCcEEEEEcccC
Confidence 531 111000000 0 000111233444 66677788888887888
Q ss_pred eEEEEeCCCCceeeEeecCCCCC--CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEe
Q 000836 1158 SIMLWDLEKEQQMVNPIPSSSDC--SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~v~ti~~hs~~--~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafs 1235 (1262)
.|++||+...+ .++.+.+|..+ -|.++ +--.+..++++|+.|+.|+||+.++++ ++. .+.||...|++|+|+
T Consensus 418 ei~LWDl~e~~-lv~kY~Ghkq~~fiIrSC-Fgg~~~~fiaSGSED~kvyIWhr~sgk-ll~---~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 418 EIHLWDLEENK-LVRKYFGHKQGHFIIRSC-FGGGNDKFIASGSEDSKVYIWHRISGK-LLA---VLSGHSKTVNCVSWN 491 (519)
T ss_pred eeEEeecchhh-HHHHhhcccccceEEEec-cCCCCcceEEecCCCceEEEEEccCCc-eeE---eecCCcceeeEEecC
Confidence 89999999777 88888888765 23433 333445799999999999999999988 442 556889999999999
Q ss_pred cCCCCCEEEEecCC-ceEEEeccc
Q 000836 1236 PGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1236 p~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
|. +..++|||||| +|++|...-
T Consensus 492 P~-~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PA-DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CC-CHHHhhccCCCCeEEEecCCc
Confidence 99 78899999977 999998653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=184.98 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=165.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
...|.++.|-.||+++++|+..|.|+|+|..+...++.+.+|. .+|..+.|+ +.++..|++|++|+.+++||+.+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~---apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~- 142 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ---APVHVTKFS-PQDNTMLVSGSDDKVVKYWDLST- 142 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc---CceeEEEec-ccCCeEEEecCCCceEEEEEcCC-
Confidence 3568999999999999999999999999987767788899999 899999997 67888999999999999999976
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~-Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
.. + ...+.+|++.|++ .+|+|..++ +++||.||.||+||+|.....+.++.... +|.++ .+-+.|.
T Consensus 143 -a~---v--~~~l~~htDYVR~----g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~--pVe~v-l~lpsgs 209 (487)
T KOG0310|consen 143 -AY---V--QAELSGHTDYVRC----GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC--PVESV-LALPSGS 209 (487)
T ss_pred -cE---E--EEEecCCcceeEe----eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC--ceeeE-EEcCCCC
Confidence 22 2 2468899999999 889887774 56668899999999999842677776533 39999 7778889
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
+|+++++ ..|+|||+-++..+...+ ..|...|+|+.+..+ +..|+||| |+.++++|+
T Consensus 210 ~iasAgG-n~vkVWDl~~G~qll~~~---~~H~KtVTcL~l~s~--~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 210 LIASAGG-NSVKVWDLTTGGQLLTSM---FNHNKTVTCLRLASD--STRLLSGSLDRHVKVFDT 267 (487)
T ss_pred EEEEcCC-CeEEEEEecCCceehhhh---hcccceEEEEEeecC--CceEeecccccceEEEEc
Confidence 9999886 579999999777555333 237789999999998 78999999 559999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=194.95 Aligned_cols=194 Identities=14% Similarity=0.282 Sum_probs=164.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|.+.|++++|..-++.+++|+.|.+++|||..+|++...+.+|. +.|.++.. .+.++++||.|.+|++|++.
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~----~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT---SSVRCLTI----DPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC---ceEEEEEc----cCceEeeccCCceEEEEecc
Confidence 466889999999888999999999999999999999999999999 88888876 46788899999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
+ +.. .+.+.+|...|++ +..+ ++.+++|+.|++|++||+++.+ ++.++.+|... |+++ .+...
T Consensus 320 n--~~~-----l~l~~~h~~~V~~----v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~-V~sl-~~~~~- 382 (537)
T KOG0274|consen 320 N--GAC-----LNLLRGHTGPVNC----VQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGR-VYSL-IVDSE- 382 (537)
T ss_pred C--cce-----EEEeccccccEEE----EEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcce-EEEE-EecCc-
Confidence 6 333 2566779999998 5554 8899999999999999999999 99999999997 9998 55433
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
..+++|+.|++|++||+++...++. ++.+|.+-|.++.+.. ++|++++.| .|++||..
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~~----~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLRD----NFLVSSSADGTIKLWDAE 441 (537)
T ss_pred ceEEeeeeccceEeecCCchhhhhh---hhcCCccccccccccc----ceeEeccccccEEEeecc
Confidence 8999999999999999998832443 5567788887777654 489999855 99999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-16 Score=177.80 Aligned_cols=202 Identities=15% Similarity=0.277 Sum_probs=169.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC----Ce
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GN 1105 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D----G~ 1105 (1262)
..|..+++...|+|.|-++++|+..|+|||||+.... +...|+.-. ++|.+|+|+ .|+..+++.+.. |.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~Wd--~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA---GPIKDISWD--FDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc---cccccceeC--CCCcEEEEEecCccceeE
Confidence 4567889999999999999999999999999998633 334566666 899999997 777777665532 56
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeE
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vts 1184 (1262)
+..||.-++- ..+.+|...|++ ++|-|... .+++||+|+.|.+|+-.--+ --.++..|+.. |.|
T Consensus 131 ~F~~DSG~Sv---------Gei~GhSr~ins----~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskF-V~~ 195 (603)
T KOG0318|consen 131 VFLWDSGNSV---------GEITGHSRRINS----VDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKF-VNC 195 (603)
T ss_pred EEEecCCCcc---------ceeeccceeEee----eeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccc-eee
Confidence 7788875532 346899999998 88888766 67788999999999877777 67778889887 999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+ .++|+|..|++.+.||+|.+||-.+++ .+..+....+|.+.|.+++|+|+ +..++|+|.| ++++||+.
T Consensus 196 V-RysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 196 V-RYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVS 265 (603)
T ss_pred E-EECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEee
Confidence 9 899999999999999999999999998 55666556689999999999999 8999999977 99999974
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=185.95 Aligned_cols=259 Identities=19% Similarity=0.304 Sum_probs=225.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-------cccchhHHHhcc---chhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhh
Q 000836 440 SEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKL 509 (1262)
Q Consensus 440 ~~qLtafe~wL~~g~~~~~pp-------~~lPiVLqvLlS---~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkL 509 (1262)
..|+++.+.+.++-+..++|| |.+|...+.|.. +.-+++|.|.|.+....+.......+..|..|-|++|
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 368999999999988888888 677777776653 3449999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhc------------------------------------
Q 000836 510 LQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD------------------------------------ 553 (1262)
Q Consensus 510 Lqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~------------------------------------ 553 (1262)
|+++..+++..+||.+++|..+.+.|+.-+++-+...-++..|.
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999966666555444443332
Q ss_pred -------CCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCch
Q 000836 554 -------SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1262)
Q Consensus 554 -------~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~ 626 (1262)
+.| ++..+++||.||+|.++-++...+.++.|++..++++|. ++.+-+++.++.++|++..+.+
T Consensus 241 ~L~~ll~~~D--~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-------~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 241 ALLRLLHSTD--EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-------HSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-------CCCcccccHHHhhccceeeccH
Confidence 122 578899999999999999999999999999999999999 8899999999999999999999
Q ss_pred hhhHhhhccCchHHHhhhhc-CCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCC
Q 000836 627 EAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGS 705 (1262)
Q Consensus 627 ~~~~~~~~~~~~~~l~~ll~-D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~s 705 (1262)
...+..+..++...|..++. .+..-+|+||+|.+|++. ++...+.++-++.+++..|+.++..+.
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt--------------AG~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT--------------AGNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh--------------cCCHHHHHHHHHcccHHHHHHHHhccc
Confidence 99999999999999999998 777779999999999998 444555567788999999999999999
Q ss_pred hhhHHHHHHHHHHHHH
Q 000836 706 PLVRAEVAVALARFAF 721 (1262)
Q Consensus 706 p~VR~E~~~~ls~~~~ 721 (1262)
...|||++|+++....
T Consensus 378 f~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTS 393 (514)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 9999999999986553
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=179.16 Aligned_cols=205 Identities=15% Similarity=0.272 Sum_probs=164.2
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1038 TKTALLQPF-SPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1038 V~sl~fspd-g~~Lasgs~dg~I~VWD~~tg-------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
-..+.|++. ..+|++|+.|++|++||+... .....|.+|. +.|.+++|. ..+..+|++++.|+.+.||
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~---~~VeDV~~h-~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE---DVVEDVAWH-PLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC---cceehhhcc-ccchhhheeecCCCeEEEE
Confidence 455888874 458999999999999999754 2345678888 899999996 6788899999999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Lls-gg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
|.+.. ..+. -+...+|...+++ ++|+|.+..+++ ||.|++|++||+|.-..++.++.+|.+. |.+|.+.
T Consensus 256 D~R~~--~~~~---~~~~~ah~~~vn~----~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de-v~~V~WS 325 (422)
T KOG0264|consen 256 DTRSN--TSKP---SHSVKAHSAEVNC----VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE-VFQVEWS 325 (422)
T ss_pred EcCCC--CCCC---cccccccCCceeE----EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc-eEEEEeC
Confidence 99962 2221 2556889999999 999997776554 5779999999999987799999999997 9999544
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCce----------eeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDML----------VCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~----------v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+....+|++++.||.+.|||+..-... ...+-.|.||...|..++|+|. ....++|.++| .+.+|+..
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~-ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN-EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC-CCeEEEEecCCceEEEeecc
Confidence 445679999999999999999642211 1112268899999999999999 66677888866 99999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=168.39 Aligned_cols=196 Identities=13% Similarity=0.195 Sum_probs=160.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
..-|.+++|+.|.++|++|+.+..++|||++.. .....+.+|. +.|..+.|. ...+.+++.+.|++||+||.++
T Consensus 100 khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght---g~Ir~v~wc--~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT---GGIRTVLWC--HEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC---CcceeEEEe--ccCceEEeeccCCceEEEEecc
Confidence 346899999999999999999999999999865 4556788888 899999998 5667788889999999999988
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
+.. + +.+. ....|++ +..+++|.+ ++..+.+.|+.||..+-. .++.+..... |.+. +.+|+..
T Consensus 175 --gt~--v---~sL~-~~s~VtS----lEvs~dG~i-lTia~gssV~Fwdaksf~-~lKs~k~P~n--V~SA-SL~P~k~ 237 (334)
T KOG0278|consen 175 --GTE--V---QSLE-FNSPVTS----LEVSQDGRI-LTIAYGSSVKFWDAKSFG-LLKSYKMPCN--VESA-SLHPKKE 237 (334)
T ss_pred --CcE--E---EEEe-cCCCCcc----eeeccCCCE-EEEecCceeEEecccccc-ceeeccCccc--cccc-cccCCCc
Confidence 322 2 2222 2445777 788886655 455667789999999998 8888877655 7777 7889999
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.+++|+.|+.++.||..+++.+.. + ..+|-++|.+|.|+|+ |...++||+| +|++|...
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~-~--nkgh~gpVhcVrFSPd--GE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGS-Y--NKGHFGPVHCVRFSPD--GELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eEEecCcceEEEEEeccCCceeee-c--ccCCCCceEEEEECCC--CceeeccCCCceEEEEEec
Confidence 999999999999999999985542 1 3688899999999999 9999999966 99999753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=168.65 Aligned_cols=212 Identities=14% Similarity=0.216 Sum_probs=166.9
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
.++.|..-|..+...-.|+.|||++.|++|+|+..+.+ +.+.++.+|. ++|+.+.|.|+.-|.+|++++.||.|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceE
Confidence 44566667777777778999999999999999999864 5788899999 99999999988899999999999999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCC--CEEEEEeCCCeEEEEeCCCC-cee-eEeecCCCCCCe
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKE-QQM-VNPIPSSSDCSI 1182 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~--~~Llsgg~Dg~IrIWDlrs~-~~~-v~ti~~hs~~~V 1182 (1262)
.||+-.. +.... ......|...|++ ++|.|.+ -.|++++.||.|.|.+.+.. .+. .....+|.-+ |
T Consensus 83 IiWke~~--g~w~k---~~e~~~h~~SVNs----V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G-v 152 (299)
T KOG1332|consen 83 IIWKEEN--GRWTK---AYEHAAHSASVNS----VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG-V 152 (299)
T ss_pred EEEecCC--Cchhh---hhhhhhhccccee----ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc-c
Confidence 9999876 33221 1345678899999 8887754 36777899999999998876 212 3344667776 9
Q ss_pred eEEEEEcCC---C-----------CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCC--CCCEEEEe
Q 000836 1183 SALTASQVH---G-----------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL--DPAKVNGT 1246 (1262)
Q Consensus 1183 tsLa~~s~~---g-----------~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~--~g~~LaSg 1246 (1262)
+++ ++.|. | ..|++|+.|..|+||+...+.-... +.+.+|..+|+.++|.|.. ....|+|+
T Consensus 153 nsV-swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 153 NSV-SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cee-eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 999 55554 3 4699999999999999987642221 2477899999999999983 24578999
Q ss_pred cCC-ceEEEecc
Q 000836 1247 PKC-LPSFSDLI 1257 (1262)
Q Consensus 1247 Sdd-~I~~WDLr 1257 (1262)
|.| .+.+|-.+
T Consensus 230 SqDg~viIwt~~ 241 (299)
T KOG1332|consen 230 SQDGTVIIWTKD 241 (299)
T ss_pred cCCCcEEEEEec
Confidence 966 88898654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=166.75 Aligned_cols=204 Identities=19% Similarity=0.235 Sum_probs=158.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|...+++++.+ ++++|+|+.|.+|+|||+.+...+..+-.|. +.|+++.|..+...+.|++|+.||.|.+|+.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 3477889999986 8999999999999999999998888898998 8999999984444458999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecC-----------CCC-
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-----------SSD- 1179 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~-----------hs~- 1179 (1262)
.. .+++ ..+++|...|+. ++.+|.+..-++.|.|+.++.||+-+++ .-...+. ..+
T Consensus 115 ~~----W~~~---~slK~H~~~Vt~----lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 115 GS----WELL---KSLKAHKGQVTD----LSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNKATLVSWSPQGDH 182 (362)
T ss_pred CC----eEEe---eeecccccccce----eEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCcceeeEEcCCCCE
Confidence 44 5555 778899999999 9999999888888999999999997765 1111110 000
Q ss_pred --------------------------CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEE
Q 000836 1180 --------------------------CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1262)
Q Consensus 1180 --------------------------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sla 1233 (1262)
..+.|+. ..++..+++|..|+.|++||..... +.. .+.+|.+.|.++.
T Consensus 183 F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~--~l~~~~L~vG~d~~~i~~~D~ds~~-~~~---~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 183 FVVSGRNKIDIYQLDNASVFREIENPKRILCAT--FLDGSELLVGGDNEWISLKDTDSDT-PLT---EFLAHENRVKDIA 256 (362)
T ss_pred EEEEeccEEEEEecccHhHhhhhhccccceeee--ecCCceEEEecCCceEEEeccCCCc-cce---eeecchhheeeeE
Confidence 0133331 2367789999999999999998744 332 3457889999998
Q ss_pred EecCCCCCEEEEec-CCceEEEeccc
Q 000836 1234 FQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1234 fsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
+--+..+.+|+|+| ++.|++||+..
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccc
Confidence 53222378999998 45999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=168.60 Aligned_cols=195 Identities=12% Similarity=0.237 Sum_probs=159.3
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
-.+|...|.+++.+|+.++++||+.|+.-.||+..+|.....+.+|. ..|+++.|+ .+|.+|+||..+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK---DSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK---DSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC---CceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 35688899999999999999999999999999999999999999999 899999998 8999999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
..+ +..+ ..+. ..+..+.. +.|+|.+..+++|+.||.+.+|.+.++. ..+.+.+|... +++= .+.|
T Consensus 135 ~st--g~~~-----~~~~---~e~~dieW-l~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~-ct~G-~f~p 200 (399)
T KOG0296|consen 135 VST--GGEQ-----WKLD---QEVEDIEW-LKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSP-CTCG-EFIP 200 (399)
T ss_pred ccc--CceE-----EEee---cccCceEE-EEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCC-cccc-cccC
Confidence 987 3322 1122 22333333 8999999999999999999999999987 89999999886 8887 7889
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
+|+.+++|..||+|++||..++. +...+..-. .....++.++.. +..+++|+.+
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e--~~~~~~~~~~~~--~~~~~~g~~e 254 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAE--GLELPCISLNLA--GSTLTKGNSE 254 (399)
T ss_pred CCceEEEEecCceEEEEecCCCc-eeEEecccc--cCcCCccccccc--cceeEeccCC
Confidence 99999999999999999999987 344442221 234566666666 5566666533
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=166.48 Aligned_cols=192 Identities=17% Similarity=0.251 Sum_probs=153.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~--~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
|..+|.+++|+-+|..|++|+.|+++.||+++.++.... ..+|. +.|-.++|. ++...+|++++.|.+||+||.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---~svdql~w~-~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---DSVDQLCWD-PKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---cchhhheeC-CCCCcceEEecCCceEEEEEe
Confidence 446789999999999999999999999999997755443 34555 789999997 778899999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------------------
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----------------------- 1168 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~----------------------- 1168 (1262)
+. +++... .......+ . +.|+|+|+++++++.|..|...|.++.+
T Consensus 95 r~--~k~~~~-----i~~~~eni-~----i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 95 RS--GKCTAR-----IETKGENI-N----ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred cc--CcEEEE-----eeccCcce-E----EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 87 444211 11111222 2 7899999999999998889888887632
Q ss_pred -----------------eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE
Q 000836 1169 -----------------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1169 -----------------~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s 1231 (1262)
+++.++.+|... +.|| .++|+|++||+|+.|..|.+||+...- +.+ .+..+.-+|..
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~sn-CicI-~f~p~GryfA~GsADAlvSLWD~~ELi-C~R---~isRldwpVRT 236 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSN-CICI-EFDPDGRYFATGSADALVSLWDVDELI-CER---CISRLDWPVRT 236 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcc-eEEE-EECCCCceEeeccccceeeccChhHhh-hhe---eeccccCceEE
Confidence 256677788876 7888 899999999999999999999997433 333 33455689999
Q ss_pred EEEecCCCCCEEEEecCC
Q 000836 1232 ISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgSdd 1249 (1262)
+.|+-+ |++|++||+|
T Consensus 237 lSFS~d--g~~lASaSED 252 (313)
T KOG1407|consen 237 LSFSHD--GRMLASASED 252 (313)
T ss_pred EEeccC--cceeeccCcc
Confidence 999999 9999999988
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=180.35 Aligned_cols=219 Identities=16% Similarity=0.275 Sum_probs=157.4
Q ss_pred ccCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeCCC-CCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1031 DTRFEK-GTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1031 ~~~~~~-~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-~~l~~~~~h~-~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
.-+|++ .|.++++.|.|..+++|+.|..|++||+..- .....|..-. .+...|.++.|+ +.|..|++.+..-..+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys--~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS--VTGDQILVVSGSAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec--CCCCeEEEEecCccee
Confidence 334554 4899999999999999999999999999742 1222222111 112569999997 7888888888888999
Q ss_pred EEEcCCC------CCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecC----
Q 000836 1108 IWKDYDQ------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS---- 1176 (1262)
Q Consensus 1108 IWD~~~~------~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~---- 1176 (1262)
|+|..-. +|. +.+......++|...+++ .+|+|... .+++++.||++|+||+...+...+.|..
T Consensus 240 l~DRdG~~~~e~~KGD-QYI~Dm~nTKGHia~lt~----g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGD-QYIRDMYNTKGHIAELTC----GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred EEccCCceeeeeeccc-hhhhhhhccCCceeeeec----cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 9997530 111 111122344788888888 89999765 6778899999999999876533333322
Q ss_pred CCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCC--CeEEEEEecCCCCCEEEEec-CCceEE
Q 000836 1177 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE--RVVGISFQPGLDPAKVNGTP-KCLPSF 1253 (1262)
Q Consensus 1177 hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~--~V~slafsp~~~g~~LaSgS-dd~I~~ 1253 (1262)
...-.++++ .|+++|+.||+|+.||+|.+||.+....- ..+..-..|.. .|++|.|+++ |++|+|-+ ++.+++
T Consensus 315 g~Rv~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~d--g~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 315 GKRVPVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYD--GNYLLSRGFDDTLKV 390 (641)
T ss_pred CcccCceee-ecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccc--cchhhhccCCCceee
Confidence 112247777 88999999999999999999998654311 11112223444 8999999999 99999988 559999
Q ss_pred Eeccccc
Q 000836 1254 SDLIYFL 1260 (1262)
Q Consensus 1254 WDLryfl 1260 (1262)
||||-|.
T Consensus 391 WDLrq~k 397 (641)
T KOG0772|consen 391 WDLRQFK 397 (641)
T ss_pred eeccccc
Confidence 9999874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=189.84 Aligned_cols=196 Identities=18% Similarity=0.366 Sum_probs=158.5
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.|...++++.||+..+ +|++|+.||+|++||++..+...++.+.. ..|.+++|+ +..+..|+++.+.|.+++||+
T Consensus 131 EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS---ESiRDV~fs-p~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 131 EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS---ESIRDVKFS-PGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccc---hhhhceeec-cCCCceEEEecCCceEEEeec
Confidence 3667899999999765 78889999999999999988888888766 789999998 678899999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEeecCCCCCCeeEEEEEcC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
+. ..++ ...+..|.+.|.+ +.|+|++.+|++||.|+.|+|||....+ ..+.++.+ ..+|.++ .|.|
T Consensus 207 Rq-p~r~-----~~k~~AH~GpV~c----~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rV-kWRP 273 (839)
T KOG0269|consen 207 RQ-PDRC-----EKKLTAHNGPVLC----LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRV-KWRP 273 (839)
T ss_pred cC-chhH-----HHHhhcccCceEE----EeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeee-eecc
Confidence 87 3333 2567899999988 9999999999999999999999998655 14444444 4459999 5555
Q ss_pred C-CCEEEEEE--CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1191 H-GGQLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1191 ~-g~lLatGs--~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
. ...|++++ .|-.|+|||+|.+-.+. ..+..|...++.++|..+ +...|.+++.|
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~---~t~~eH~~~vt~i~W~~~-d~~~l~s~sKD 331 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPY---ATFLEHTDSVTGIAWDSG-DRINLWSCSKD 331 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccc---eeeeccCccccceeccCC-CceeeEeecCc
Confidence 4 45677765 48899999999665333 245678899999999875 56678898866
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=170.36 Aligned_cols=204 Identities=17% Similarity=0.288 Sum_probs=164.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEeeCCCCCCCCeEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------------------------DTLLNSFDNHDFPDKGISKLC 1087 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t-------------------------g~~l~~~~~h~~~~~~ItsL~ 1087 (1262)
+|...|.++...++|..+++|+.|.+|.||+.++ +.++.++.+|. .+|.++.
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt---~~Vs~V~ 267 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT---EPVSSVV 267 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc---cceeeEE
Confidence 6788899999999999999999999999999321 23566788899 8999999
Q ss_pred EeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 000836 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1262)
Q Consensus 1088 fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~ 1167 (1262)
|+ +...+.++|.|.+|++||+.. +... ..+.+ ....++ ++.++....|++|+.|+.||+||.|++
T Consensus 268 w~---d~~v~yS~SwDHTIk~WDlet--g~~~-----~~~~~-~ksl~~----i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 268 WS---DATVIYSVSWDHTIKVWDLET--GGLK-----STLTT-NKSLNC----ISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred Ec---CCCceEeecccceEEEEEeec--ccce-----eeeec-CcceeE----eecccccceeeecCCCCceeecCCCCC
Confidence 95 578999999999999999987 3321 11221 223455 888898899999999999999999986
Q ss_pred c--eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000836 1168 Q--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNG 1245 (1262)
Q Consensus 1168 ~--~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaS 1245 (1262)
. -..+++.+|... |.++.+.+.+...|++|+.||++++||+|+....+. ...+|...|.++.|... ..++|
T Consensus 333 ~gs~v~~s~~gH~nw-Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply---dI~~h~DKvl~vdW~~~---~~IvS 405 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNW-VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY---DIAGHNDKVLSVDWNEG---GLIVS 405 (423)
T ss_pred CCceeEEeeecchhh-hhheecCCCCceEEEEEecCCeEEEEEeccCCCcce---eeccCCceEEEEeccCC---ceEEe
Confidence 5 256778899985 999955556777899999999999999998874443 34577899999999855 47899
Q ss_pred ecCC-ceEEEecccccc
Q 000836 1246 TPKC-LPSFSDLIYFLA 1261 (1262)
Q Consensus 1246 gSdd-~I~~WDLryfla 1261 (1262)
|+.| .+++..-+-+++
T Consensus 406 GGaD~~l~i~~~~~~~~ 422 (423)
T KOG0313|consen 406 GGADNKLRIFKGSPITK 422 (423)
T ss_pred ccCcceEEEeccccccc
Confidence 9955 898887666554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-17 Score=192.48 Aligned_cols=206 Identities=21% Similarity=0.385 Sum_probs=178.6
Q ss_pred ccccCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1029 CWDTRF----EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1029 ~w~~~~----~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
.|+.++ ...|.++..-..++.+++|+.+..+-+|....-..+-.+.+|. +.|-++.|. .+..+|++|+.||
T Consensus 18 ~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f~--~~E~Llaagsasg 92 (825)
T KOG0267|consen 18 VWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---SPIESLTFD--TSERLLAAGSASG 92 (825)
T ss_pred cccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---CcceeeecC--cchhhhcccccCC
Confidence 465553 4567788877788899999999999999998777777799999 899999996 7888999999999
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeE
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vts 1184 (1262)
+|++||+.. ++. ++++.+|...+.+ ++|+|-+.+.+.|+.|+.+++||++... |.+.+.+|... |.+
T Consensus 93 tiK~wDlee--Ak~-----vrtLtgh~~~~~s----v~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~v-v~~ 159 (825)
T KOG0267|consen 93 TIKVWDLEE--AKI-----VRTLTGHLLNITS----VDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRV-VDV 159 (825)
T ss_pred ceeeeehhh--hhh-----hhhhhccccCcce----eeeccceEEeccccccccceehhhhccC-ceeeecCCcce-eEE
Confidence 999999975 322 4899999999988 8999999999888999999999999988 99999998776 777
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
+ .+.|+|++++.|+.|..|+|||.+.++ +.. .+.+|.+.|.++.|+|. .-.+++||.+ .++|||+..|
T Consensus 160 l-~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~---ef~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 160 L-RLSPDGRWVASGGEDNTVKIWDLTAGK-LSK---EFKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred E-eecCCCceeeccCCcceeeeecccccc-ccc---ccccccccccccccCch--hhhhccCCCCceeeeecccee
Confidence 7 899999999999999999999998887 443 55677899999999999 7788999866 9999999855
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=165.65 Aligned_cols=198 Identities=14% Similarity=0.234 Sum_probs=159.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|+..|+++.|+.+|.+||||+-+|.|+||+..++.....+...- ..|.-+.|. +.+.+|++|+.||.|-+|.+.
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~---~dieWl~WH--p~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV---EDIEWLKWH--PRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc---CceEEEEec--ccccEEEeecCCCcEEEEECC
Confidence 366789999999999999999999999999999998887776333 678889996 688999999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-----------------
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP----------------- 1175 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~----------------- 1175 (1262)
. ++.. +.+.+|+..+++ =.|.|+|..++++.+||+|++||..+++ ++..+.
T Consensus 179 ~-~~~~------kv~~Gh~~~ct~----G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~ 246 (399)
T KOG0296|consen 179 S-QALC------KVMSGHNSPCTC----GEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGS 246 (399)
T ss_pred C-ccee------eEecCCCCCccc----ccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccc
Confidence 6 2222 567899999888 5778999999999999999999998765 333222
Q ss_pred ------------------------------------------------------------------------------CC
Q 000836 1176 ------------------------------------------------------------------------------SS 1177 (1262)
Q Consensus 1176 ------------------------------------------------------------------------------~h 1177 (1262)
.|
T Consensus 247 ~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h 326 (399)
T KOG0296|consen 247 TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH 326 (399)
T ss_pred eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC
Confidence 12
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1178 s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
..+ |+.+ .|-+ ..+|++++.||.|+.||.|++.. .. .+.||...|.+++++|+ .+.++|+|++ ..++++.
T Consensus 327 e~~-V~~l-~w~~-t~~l~t~c~~g~v~~wDaRtG~l-~~---~y~GH~~~Il~f~ls~~--~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 327 EDG-VTKL-KWLN-TDYLLTACANGKVRQWDARTGQL-KF---TYTGHQMGILDFALSPQ--KRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CCc-eEEE-EEcC-cchheeeccCceEEeeeccccce-EE---EEecCchheeEEEEcCC--CcEEEEecCCCeEEEEec
Confidence 222 4445 3333 57888999999999999999983 32 45688899999999999 9999999976 7777764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=170.87 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=165.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.+|...|+.+.||++...+++++.|..|+||.............|. .+|+.+... +.|.+|++++.||+..+.|.
T Consensus 258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~---~~V~~ls~h--~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE---EPVTGLSLH--PTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred cCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc---ccceeeeec--cCCcEEEEecCCceEEEEEc
Confidence 3566779999999999999999999999999999877777777888 899999885 89999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
++ +..-.+ ..-....-.+++ ..|+|||-.+.+|..|+.|+|||+.+.. .+..|++|++. |.++ .|+.+
T Consensus 333 ~~--g~~lt~---vs~~~s~v~~ts----~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~-vk~i-~FsEN 400 (506)
T KOG0289|consen 333 SS--GSQLTV---VSDETSDVEYTS----AAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGP-VKAI-SFSEN 400 (506)
T ss_pred cC--CcEEEE---EeeccccceeEE----eeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCc-eeEE-EeccC
Confidence 87 443211 011111223455 8999999899899999999999999999 99999999987 9999 99999
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
|.++++++.|+.|++||+|..+ ....+.... ...|.++.|... |.+|+.++.+ .|.+.+
T Consensus 401 GY~Lat~add~~V~lwDLRKl~-n~kt~~l~~--~~~v~s~~fD~S--Gt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLK-NFKTIQLDE--KKEVNSLSFDQS--GTYLGIAGSDLQVYICK 460 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhc-ccceeeccc--cccceeEEEcCC--CCeEEeecceeEEEEEe
Confidence 9999999999999999999776 344442221 237999999999 9999998776 555544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=168.74 Aligned_cols=195 Identities=15% Similarity=0.248 Sum_probs=168.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~-~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
++..|.|+.|+.|...+++|+.||.|+||.+.+|.|++.|. +|. ..|+++.|+ .|+..+++++.|.+|||.-+.
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt---kGvt~l~FS--rD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT---KGVTCLSFS--RDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc---cCeeEEEEc--cCcchhhcccccceEEEeccc
Confidence 45789999999999999999999999999999999999998 788 899999998 899999999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC-CCCCeeEEEEEcCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVH 1191 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h-s~~~VtsLa~~s~~ 1191 (1262)
. |+. ++.+.+|.+-|+. ..|.++|.++++++.||+|++|+..+.+ |+.++... .+.+|.++--++.+
T Consensus 337 S--GK~-----LKEfrGHsSyvn~----a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 337 S--GKC-----LKEFRGHSSYVNE----ATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred c--chh-----HHHhcCccccccc----eEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCC
Confidence 7 554 3678999999999 8899999999999999999999999999 99998643 44468888667778
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
...+++|....+|.|-++. ++ .++.+..-+.-.+...+..++|. |.++.+.++|
T Consensus 405 peh~iVCNrsntv~imn~q-GQ-vVrsfsSGkREgGdFi~~~lSpk--GewiYcigED 458 (508)
T KOG0275|consen 405 PEHFIVCNRSNTVYIMNMQ-GQ-VVRSFSSGKREGGDFINAILSPK--GEWIYCIGED 458 (508)
T ss_pred CceEEEEcCCCeEEEEecc-ce-EEeeeccCCccCCceEEEEecCC--CcEEEEEccC
Confidence 8899999999999998885 33 66666444444566777888999 8888888877
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=184.08 Aligned_cols=200 Identities=14% Similarity=0.218 Sum_probs=161.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+|...|..+.|+.+ ++|++++-|.+|++|+....+|+..|. |+ .-|||++|. +.|.++|++||-||+||||++.
T Consensus 367 GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn---dfVTcVaFn-PvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 367 GHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HN---DFVTCVAFN-PVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cC---CeeEEEEec-ccCCCcEeecccccceEEeecC
Confidence 36678999999965 589999999999999999999999985 66 689999995 8999999999999999999996
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecC--C------CCCCeeE
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS--S------SDCSISA 1184 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~--h------s~~~Vts 1184 (1262)
. .+ |..|..+ ...|++ ++|.|+|+..++|+.+|.+++|+.+..+ ...++.. + .. .||.
T Consensus 441 d----~~-Vv~W~Dl---~~lITA----vcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~-rITG 506 (712)
T KOG0283|consen 441 D----KK-VVDWNDL---RDLITA----VCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGK-RITG 506 (712)
T ss_pred c----Ce-eEeehhh---hhhhee----EEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCc-eeee
Confidence 5 22 3233333 356777 9999999999999999999999999887 6655432 1 12 3999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
+.+++.+...+++.+.|..|||||.+... +++.++.+..-.+ -....|..+ |++|++|++| .+++|++
T Consensus 507 ~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~S-Q~~Asfs~D--gk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSS-QISASFSSD--GKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCc-ceeeeEccC--CCEEEEeecCceEEEEeC
Confidence 97776666778888999999999998766 6666665543223 356788889 9999999988 9999997
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=167.40 Aligned_cols=209 Identities=15% Similarity=0.231 Sum_probs=167.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|...|+++.|||-+.+|++|+.|++|+++|+..-...+.++... ....|.++.|. +.|.+|++|....++|+||+.+
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfH--PsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFH--PSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeec--CCCceEEEecCCCceeEEeccc
Confidence 56789999999999999999999999999998643222222211 11479999996 8999999999999999999987
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEEEcCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~~s~~g 1192 (1262)
- ...+++ ..-.+|...|++ +.+++.+...++++.||.|++||--+++ |+.+|. +|.++.|.+. .|..+|
T Consensus 248 --~-Qcfvsa-nPd~qht~ai~~----V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa-~Ftkn~ 317 (430)
T KOG0640|consen 248 --Y-QCFVSA-NPDDQHTGAITQ----VRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSA-VFTKNG 317 (430)
T ss_pred --e-eEeeec-CcccccccceeE----EEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeE-EEccCC
Confidence 2 223322 244678899998 9999999999999999999999999999 999985 5666668887 899999
Q ss_pred CEEEEEECCCcEEEEECCCCCcee------------------------------------eeecC---------CCCCCC
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLV------------------------------------CSTRP---------HTQQVE 1227 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v------------------------------------~~~~~---------~~gH~~ 1227 (1262)
+++++.+.|..|++|.+.++..+. +.|.. .-||++
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~ 397 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG 397 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence 999999999999999997655221 11100 125888
Q ss_pred CeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1228 RVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1228 ~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.+..+.-+|. +.-++++|+| .++||--+
T Consensus 398 a~R~i~HSP~--~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPV--EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCC--CCceeeecccceeeeeeec
Confidence 9999999999 8889999988 99999654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=172.90 Aligned_cols=203 Identities=16% Similarity=0.277 Sum_probs=162.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|-..+.+++.++||++||+|+.|..|.|||..+.+.+..|.+|. +.|.+++|- ...+.+.+++.|++|++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~fr--~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAFR--KGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc---cceeeeeee--cCccceeeeecCCceEEEeh
Confidence 3677789999999999999999999999999999999999999999 899999995 56678999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.. ...+ .++.+|.+.|.+ ++-...+..+-+|+.|+++++|++..+. -..+.++.++ +.|++.. +
T Consensus 274 ~~----~s~v---etlyGHqd~v~~----IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~s-idcv~~I--n 337 (479)
T KOG0299|consen 274 DQ----LSYV---ETLYGHQDGVLG----IDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGS-IDCVAFI--N 337 (479)
T ss_pred hH----hHHH---HHHhCCccceee----echhcccceEEeccccceeEEEeccccc--eeeeeCCCCC-eeeEEEe--c
Confidence 65 2222 577899999988 4444556666677899999999995544 4556677766 8888444 5
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCC--------CCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--------QQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~--------gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
...|++|+.||.|.+|++-..+.+......|. .+..||++++..|+ ..++++|| ++.+++|...
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEec
Confidence 57899999999999999987663322211221 12349999999999 89999999 5599999864
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=172.64 Aligned_cols=263 Identities=17% Similarity=0.249 Sum_probs=222.1
Q ss_pred CCccHHHHHHHHHHHhhcCCCCCCCCccc-------chhHHHhcc-ch--hHHHHHHHHHHHhcCCHHHHHHHHhcCChh
Q 000836 435 PSPFFSEQLTAFEVWLDHGSEHKKPPEQL-------PIVLQVLLS-QC--HRFRALVLLGRFLDMGPWAVDLALSVGIFP 504 (1262)
Q Consensus 435 ~~~ff~~qLtafe~wL~~g~~~~~pp~~l-------PiVLqvLlS-~~--~rlral~lL~~fld~gpwAv~lals~gifp 504 (1262)
.|+=.++||.|.-.|.++-+.+..||.|- |-+.+.+-+ |- .+++|.|.|.+......--....+..|..|
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVP 160 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVP 160 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchH
Confidence 35567899999999999999988888553 334454423 33 378999999998877777777788999999
Q ss_pred hhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhc-------------------------------
Q 000836 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD------------------------------- 553 (1262)
Q Consensus 505 yvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~------------------------------- 553 (1262)
.|++||.++..++|...||.+..|..+.+-|+-..+..+...-.+.+|.
T Consensus 161 lfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~ 240 (526)
T COG5064 161 LFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN 240 (526)
T ss_pred HHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH
Confidence 9999999999999999999999999999988733333333333333332
Q ss_pred -------------CCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHh
Q 000836 554 -------------SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGK 620 (1262)
Q Consensus 554 -------------~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~ 620 (1262)
+.| +|.-..|||.+|+|.++-.+...+.++.|...+++++|. +++..+.+.++..+|+
T Consensus 241 isqalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs-------~~sa~iqtPalR~vGN 311 (526)
T COG5064 241 ISQALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS-------HESAKIQTPALRSVGN 311 (526)
T ss_pred HHHHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc-------CccccccCHHHHhhcC
Confidence 122 688889999999999999999999999999999999999 8999999999999999
Q ss_pred hhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 000836 621 LWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTV 700 (1262)
Q Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~ 700 (1262)
+..+.|...++-|++++...+..+|+.+.--+|||+||.+|++. ++..++.++.+|..++..|+.+
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT--------------AGnteqiqavid~nliPpLi~l 377 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT--------------AGNTEQIQAVIDANLIPPLIHL 377 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc--------------cCCHHHHHHHHhcccchHHHHH
Confidence 99999999999999999999999999999999999999999997 4455566778999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHH
Q 000836 701 VSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 701 ~~D~sp~VR~E~~~~ls~~~ 720 (1262)
+.-+.-..|||+.|+++...
T Consensus 378 ls~ae~k~kKEACWAisNat 397 (526)
T COG5064 378 LSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=180.39 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=170.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEeeCCC----CCCCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-----DTLLNSFDNHD----FPDKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t-----g~~l~~~~~h~----~~~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
.|.+.++.++.+||+..+++|+.|.+|++||.+- |.....+.-+. .-...|.|++++ +||.+|+++--|
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S--pdgk~LaVsLLd 529 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS--PDGKLLAVSLLD 529 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc--CCCcEEEEEecc
Confidence 4678899999999999999999999999999752 21111111111 001579999998 999999999999
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
.+|+||-+.+ .+. +-.+-||.-+|.+ ++.++++..+++||.|+.|+||-+.-+. |-+.+.+|.++ |.
T Consensus 530 nTVkVyflDt----lKF---flsLYGHkLPV~s----mDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDS-vm 596 (888)
T KOG0306|consen 530 NTVKVYFLDT----LKF---FLSLYGHKLPVLS----MDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDS-VM 596 (888)
T ss_pred CeEEEEEecc----eee---eeeecccccceeE----EeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCc-ee
Confidence 9999999976 222 2467899999999 9999999999999999999999999999 99999999998 99
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
++ .|.|....|.+++.||.|+-||-..-+.. +.+.+|...|++++..|+ |.+++|+|.| +|++|..
T Consensus 597 ~V-~F~P~~~~FFt~gKD~kvKqWDg~kFe~i----q~L~~H~~ev~cLav~~~--G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 597 SV-QFLPKTHLFFTCGKDGKVKQWDGEKFEEI----QKLDGHHSEVWCLAVSPN--GSFVVSSSHDKSIRLWER 663 (888)
T ss_pred EE-EEcccceeEEEecCcceEEeechhhhhhh----eeeccchheeeeeEEcCC--CCeEEeccCCceeEeeec
Confidence 99 77889999999999999999998876633 256688899999999999 9999999976 9999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=184.78 Aligned_cols=193 Identities=17% Similarity=0.285 Sum_probs=163.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~-~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
...+.+..|+ +.++++++.+.+|++||..++..+.. +.+|. +.|.++++. .-+.++++|+.|.++||||..+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAFP--SGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC---CCceeEEEe--cCCCEEEEEecCCcEEeEecCC
Confidence 4567888888 66899999999999999999988888 99999 999999995 4678999999999999999876
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
|.+. ..+.+|...+.+ +.. ....+++|+.|.+|++||+.++. +++.+.+|.+. |.++ .. ++.
T Consensus 281 --g~C~-----~~l~gh~stv~~----~~~--~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~-V~~v-~~--~~~ 342 (537)
T KOG0274|consen 281 --GECT-----HSLQGHTSSVRC----LTI--DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGP-VNCV-QL--DEP 342 (537)
T ss_pred --CcEE-----EEecCCCceEEE----EEc--cCceEeeccCCceEEEEeccCcc-eEEEecccccc-EEEE-Ee--cCC
Confidence 6553 568899998887 433 34567777899999999999999 99999998886 9999 43 489
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
++++|+.||+|+|||.++++ ++. .+.||..+|.++.+... .++++|+-| .|++||++..
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~-cl~---sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGK-CLK---SLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EEEEEecCceEEEEEhhhce-eee---eecCCcceEEEEEecCc---ceEEeeeeccceEeecCCch
Confidence 99999999999999999777 443 56679999999987652 489999955 8999999754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=163.72 Aligned_cols=210 Identities=13% Similarity=0.177 Sum_probs=158.5
Q ss_pred cccccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc----------EEE--Ee---eCCCCCCCCeEEEEEeec
Q 000836 1028 ACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT----------LLN--SF---DNHDFPDKGISKLCLVNE 1091 (1262)
Q Consensus 1028 ~~w~~~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~----------~l~--~~---~~h~~~~~~ItsL~fsn~ 1091 (1262)
..+...|++.|+++...+ .|+++++|+.||.|.|||+++.. -++ .- .+|. -.|+++.|- +
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk---y~iss~~Wy-P 111 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK---YAISSAIWY-P 111 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce---eeeeeeEEe-e
Confidence 345678999999999988 67899999999999999998532 111 11 2233 689999997 6
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCC---CCEEEEEeCCCeEEEEeCCCCc
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQ 1168 (1262)
Q Consensus 1092 ~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~---~~~Llsgg~Dg~IrIWDlrs~~ 1168 (1262)
.|..++.++|.|.+++|||..+.+ ... . ......|.+ -+|+|- .-.+++|..+-.|++.|+.++.
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ--~a~-----~-F~me~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQ--EAV-----D-FKMEGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecCceeecccccceEEEeecccce--eeE-----E-eecCceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 788999999999999999998721 111 1 123344555 455553 2355666778899999999999
Q ss_pred eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecC-----------CCCCCCCeEEEEEecC
Q 000836 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP-----------HTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1169 ~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~-----------~~gH~~~V~slafsp~ 1237 (1262)
+.+++.+|.+. |.++.|.+...-+|++|+.||.||+||+|....+...+.. ...|.+.|.+++|..+
T Consensus 180 -~sH~LsGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 180 -FSHTLSGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -ceeeeccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 99999999998 9999544445558999999999999999975333333322 2357889999999999
Q ss_pred CCCCEEEEec-CCceEEEecc
Q 000836 1238 LDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1238 ~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
+.++++.+ ++.+++|...
T Consensus 258 --~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 258 --ARYLASCGTDDRIRVWNME 276 (397)
T ss_pred --chhhhhccCccceEEeecc
Confidence 88888887 5599999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-16 Score=182.51 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=171.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg--~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
|...|+.+....+++.|++++.|-+|++|+...+ -++.++..|. .-|.|+++. ..+..++++|+-|+.|.+||+
T Consensus 72 HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~---DYVkcla~~-ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 72 HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK---DYVKCLAYI-AKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc---chheeeeec-ccCceeEEecCCCccEEEEEc
Confidence 3345667777778889999999999999999887 6788899999 899999995 578899999999999999999
Q ss_pred CCCCCcceEEeee-----eecc-CCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1112 YDQKDKQKLVTAF-----SSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~-----~~l~-~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
.. +...++..+ ..+. ++...|.+ ++-+|.+..+++||..+.+++||.++.+ .+..+.+|.+. |.++
T Consensus 148 n~--~~~~l~~s~n~~t~~sl~sG~k~siYS----LA~N~t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdN-Vr~l 219 (735)
T KOG0308|consen 148 NT--GTATLVASFNNVTVNSLGSGPKDSIYS----LAMNQTGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDN-VRVL 219 (735)
T ss_pred cC--cchhhhhhccccccccCCCCCccceee----eecCCcceEEEecCcccceEEecccccc-ceeeeeccccc-eEEE
Confidence 86 211122111 1222 67778888 7778888778888889999999999999 99999999998 9999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
....+|..+++|+.||+|++||++... ++.+ +..|...|+++..+|+ -.++.+|+.+ .|..-|++.+
T Consensus 220 -l~~dDGt~~ls~sSDgtIrlWdLgqQr-Cl~T---~~vH~e~VWaL~~~~s--f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 220 -LVNDDGTRLLSASSDGTIRLWDLGQQR-CLAT---YIVHKEGVWALQSSPS--FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred -EEcCCCCeEeecCCCceEEeeeccccc-eeee---EEeccCceEEEeeCCC--cceEEecCCCCcEEecccCCc
Confidence 888999999999999999999999777 4433 4456788999999999 8899999955 9998998875
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=158.78 Aligned_cols=201 Identities=14% Similarity=0.227 Sum_probs=162.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC--CCeEEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIRIW 1109 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~--DG~IrIW 1109 (1262)
....+.|.++.|+++|.+++++++|++|++||..+++.++++..+. -.|..++|. ...+.++.++. |.+||.-
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Ft--h~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFT--HHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEe--cCCceEEEccCCCCCceEEE
Confidence 3366889999999999999999999999999999999999998877 788899997 45556666665 8899999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
++.+ .+ . +|.+.||...|++ ++-+|-+..+++++.|++||+||+|..+ |...+...... +++++
T Consensus 86 sl~d--Nk--y---lRYF~GH~~~V~s----L~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~p----i~AfD 149 (311)
T KOG1446|consen 86 SLHD--NK--Y---LRYFPGHKKRVNS----LSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGRP----IAAFD 149 (311)
T ss_pred Eeec--Cc--e---EEEcCCCCceEEE----EEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCCc----ceeEC
Confidence 9976 33 2 3889999999999 8889999999999999999999999888 87777654432 44789
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC-ceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEe
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSD 1255 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~-~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WD 1255 (1262)
|.|-+||+|...+.|++||+|+-+ .+...+....+-....+.+.|+|+ |+.|+.+. .+.+.+-|
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLD 215 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEE
Confidence 999999999998899999999853 344455333244567899999999 66655554 44555544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=173.72 Aligned_cols=211 Identities=14% Similarity=0.188 Sum_probs=156.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE------------eeCCCCCCCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS------------FDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~------------~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
..|.++.|++.|..+++.+....++|+|-...+.+.. -++|. ..++|.+|. +.....++|++.|
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi---a~lt~g~wh-P~~k~~FlT~s~D 290 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI---AELTCGCWH-PDNKEEFLTCSYD 290 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce---eeeeccccc-cCcccceEEecCC
Confidence 5699999999999888888889999999874333222 24566 789999995 6777899999999
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEe-ecCCCC-C
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNP-IPSSSD-C 1180 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-~~v~t-i~~hs~-~ 1180 (1262)
|++||||+.......+++. -+...+..-.++. ++|++++..|++|..||.|.+||.+... .+... -.+|.. .
T Consensus 291 gtlRiWdv~~~k~q~qVik-~k~~~g~Rv~~ts----C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIK-TKPAGGKRVPVTS----CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred CcEEEEecCCchhheeEEe-eccCCCcccCcee----eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 9999999987443333321 1222233333444 8999999999999999999999986543 12222 234544 1
Q ss_pred CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC-------CceEE
Q 000836 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK-------CLPSF 1253 (1262)
Q Consensus 1181 ~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd-------d~I~~ 1253 (1262)
.|+|| .|+.+|++|++-+.|+++++||+|..+.++..+..+. ..-+-+.++|+|+ .++|++|+. +.+.|
T Consensus 366 ~Itsi-~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd--~kli~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 366 DITSI-SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPD--DKLILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred ceeEE-EeccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCCC--ceEEEecccccCCCCCceEEE
Confidence 39999 9999999999999999999999999886665553332 2345688999999 889999872 26788
Q ss_pred Eecccc
Q 000836 1254 SDLIYF 1259 (1262)
Q Consensus 1254 WDLryf 1259 (1262)
+|-+.|
T Consensus 442 ~d~~t~ 447 (641)
T KOG0772|consen 442 FDRMTL 447 (641)
T ss_pred Eeccce
Confidence 876543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=166.78 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=164.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee---CCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~---~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
|..-|.|+.|+|||..+++++.||+|.+||-.+|+.+..+. +|. +.|.+++|+ ||+..++|+|.|.++||||
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk---GsIfalsWs--PDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK---GSIFALSWS--PDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc---ccEEEEEEC--CCCceEEEecCCceEEEEE
Confidence 45569999999999999999999999999999999999998 566 999999998 9999999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
+.+ . ++++.|-.-.. +-...+.+-|+ +..|++.+-+|.|..++..... .++.+.+|... |+++ ..++
T Consensus 264 Vs~--~--slv~t~~~~~~----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~-ITaL-tv~~ 330 (603)
T KOG0318|consen 264 VST--N--SLVSTWPMGST----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKS-ITAL-TVSP 330 (603)
T ss_pred eec--c--ceEEEeecCCc----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccc-eeEE-EEcC
Confidence 976 2 45544332211 22222336786 7889999999999999999999 99999999997 9999 7889
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
++..|.+|+.||.|.-||..++... .+ .-++|.+.|.+++.+.. +.++.+|=||.+++-++
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~--~~-~g~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSD--RL-AGKGHTNQIKGMAASES--GELFTIGWDDTLRVISL 391 (603)
T ss_pred CCCEEEeeccCceEEEEecCCcccc--cc-ccccccceEEEEeecCC--CcEEEEecCCeEEEEec
Confidence 9999999999999999999887632 11 23578899999998875 44444444778887765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=188.64 Aligned_cols=193 Identities=19% Similarity=0.346 Sum_probs=169.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..|..+|.++.|+..+.+|++|+.+|+|+|||+++++.++++.+|. ..++++.|. +-+.+++.|+.|+.+++||.
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---~~~~sv~f~--P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---LNITSVDFH--PYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---cCcceeeec--cceEEeccccccccceehhh
Confidence 4577899999999999999999999999999999999999999999 889999996 88999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
+. .| +. ..+.+|...+.. +.|+|+|.+++++++|.+++|||+..++ .+.+|.+|.+. +.++ -+++.
T Consensus 142 Rk-~G-c~-----~~~~s~~~vv~~----l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~-v~sl-e~hp~ 207 (825)
T KOG0267|consen 142 RK-KG-CS-----HTYKSHTRVVDV----LRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGK-VQSL-EFHPL 207 (825)
T ss_pred hc-cC-ce-----eeecCCcceeEE----EeecCCCceeeccCCcceeeeecccccc-ccccccccccc-cccc-ccCch
Confidence 75 22 21 456778777777 8999999999999999999999999999 99999999997 9999 68888
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
.-++++|+.|++|++||+++.+.+. ..+. -...|.++.|+|+ ++.+.+|...
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I~-s~~~---~~~~v~~~~fn~~--~~~~~~G~q~ 259 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVIS-SGKP---ETDGVRSLAFNPD--GKIVLSGEQI 259 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEee-ccCC---ccCCceeeeecCC--ceeeecCchh
Confidence 8999999999999999999877333 2222 2578999999999 8888888755
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=162.56 Aligned_cols=202 Identities=18% Similarity=0.313 Sum_probs=145.5
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEE-EeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1034 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1034 ~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~t-g~~l~-~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
-...|.+++|+| ...++++|+.||+||+|+++. |..+. ....|. ++|.+++|+ .||..+++|+.||.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~Ws--ddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCWS--DDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEEc--cCCceEEeeccCCceEEEE
Confidence 346799999999 556777899999999999987 34333 234566 899999998 8999999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEeecCCCC---------
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSD--------- 1179 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~--~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~--------- 1179 (1262)
+.+ +.. ..+..|...|+. +.|-+... .|++|+.|++||.||.|... ++.++.....
T Consensus 101 L~S--~Q~------~~v~~Hd~pvkt----~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeRvYa~Dv~~p 167 (347)
T KOG0647|consen 101 LAS--GQV------SQVAAHDAPVKT----CHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPERVYAADVLYP 167 (347)
T ss_pred ccC--CCe------eeeeecccceeE----EEEecCCCcceeEecccccceeecccCCCC-eeeeeeccceeeehhccCc
Confidence 987 443 455779999998 88877555 78899999999999999876 5544432211
Q ss_pred -------------------------------CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-eeeeecCCCC---
Q 000836 1180 -------------------------------CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQ--- 1224 (1262)
Q Consensus 1180 -------------------------------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~-~v~~~~~~~g--- 1224 (1262)
..+.||+++. +...++.|+-.|.|-|..+..+.. ..-.++-|+.
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence 1256664443 445557777788887777765421 1112222211
Q ss_pred ---CCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1225 ---QVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1225 ---H~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
.--.|++|+|+|. ...|+|++ |+.+.|||-
T Consensus 247 ~~~~VYaVNsi~FhP~--hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPV--HGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred CCCceEEecceEeecc--cceEEEecCCceEEEecc
Confidence 0125889999998 66777766 669999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=186.30 Aligned_cols=205 Identities=17% Similarity=0.278 Sum_probs=169.2
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCC------------CcEEEEeeCCCCCCCCeEEEEEeecCC
Q 000836 1028 ACWDTRFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEE------------DTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1262)
Q Consensus 1028 ~~w~~~~~~~V~sl~fspdg~~Lasgs--~dg~I~VWD~~t------------g~~l~~~~~h~~~~~~ItsL~fsn~~d 1093 (1262)
..|...++..|.+++.||++..++||+ .|+.++||+.+. .+.+.+...|. +.|+|+.|+ +|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---~sv~CVR~S--~d 80 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---GSVNCVRFS--PD 80 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---CceeEEEEC--CC
Confidence 457777788899999999999999999 899999998753 23456667787 899999998 99
Q ss_pred CcEEEEEeCCCeEEEEEcCC--------CCCcceEEeee---eeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEE
Q 000836 1094 VSLLLVASCNGNIRIWKDYD--------QKDKQKLVTAF---SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1094 g~lLaTgS~DG~IrIWD~~~--------~~g~~~lvsa~---~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW 1162 (1262)
|.+|++||+|+.|.||+... +.+....+..| ..+.+|...|.. ++|+|++.+++++|.|++|.||
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D----v~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD----VNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce----eccCCCccEEEEecccceEEEE
Confidence 99999999999999999872 11223333334 467889999999 9999999999999999999999
Q ss_pred eCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCC---CCCCCeEEEEEecCCC
Q 000836 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---QQVERVVGISFQPGLD 1239 (1262)
Q Consensus 1163 Dlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~---gH~~~V~slafsp~~~ 1239 (1262)
|.++.+ ++..+.+|.+- |-.+ .|+|-|++|++-+.|++|+||++..-. +.+.+...- +-...+..+.|+|+
T Consensus 157 n~~tF~-~~~vl~~H~s~-VKGv-s~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD-- 230 (942)
T KOG0973|consen 157 NAKTFE-LLKVLRGHQSL-VKGV-SWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD-- 230 (942)
T ss_pred ccccce-eeeeeeccccc-ccce-EECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC--
Confidence 999998 99999999997 9999 889999999999999999999976543 233322211 22456889999999
Q ss_pred CCEEEEec
Q 000836 1240 PAKVNGTP 1247 (1262)
Q Consensus 1240 g~~LaSgS 1247 (1262)
|.+|+++.
T Consensus 231 G~~las~n 238 (942)
T KOG0973|consen 231 GHHLASPN 238 (942)
T ss_pred cCeecchh
Confidence 99999875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-15 Score=160.74 Aligned_cols=199 Identities=19% Similarity=0.348 Sum_probs=157.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..-...|++|.|+|.+..|++++.||.+++||.........+. |. .++.+.+|. +...+++|+.||.||.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~---~plL~c~F~---d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG---APLLDCAFA---DESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC---Cceeeeecc---CCceEEEeccCceEEEEEe
Confidence 3345679999999999999999999999999999876555554 44 689999995 6788999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.. +.. ..+..|...|++ +.+.+..+.+++||.|++|++||.|... ++..+..... |.++ +..
T Consensus 83 n~--~~~------~~igth~~~i~c----i~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~~kk--Vy~~---~v~ 144 (323)
T KOG1036|consen 83 NT--GNE------DQIGTHDEGIRC----IEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQGKK--VYCM---DVS 144 (323)
T ss_pred cC--Ccc------eeeccCCCceEE----EEeeccCCeEEEcccCccEEEEeccccc-cccccccCce--EEEE---ecc
Confidence 87 333 235678889998 8888989999999999999999999877 7777766552 8877 557
Q ss_pred CCEEEEEECCCcEEEEECCCCCce--------------eeeecCCC------------------------------CCC-
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDML--------------VCSTRPHT------------------------------QQV- 1226 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~--------------v~~~~~~~------------------------------gH~- 1226 (1262)
|+.|++|+.|..|.+||+|+.+.. ++.+.... -|.
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 889999999999999999864311 11111000 121
Q ss_pred --------CCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1227 --------ERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1227 --------~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
-+|++++|||- ...|+||+ |+.+.+||+.
T Consensus 225 ~~~~~~~~yPVNai~Fhp~--~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPI--HGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred ccCCceEEEEeceeEeccc--cceEEecCCCceEEEccCc
Confidence 27999999999 88999998 5599999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=150.10 Aligned_cols=207 Identities=20% Similarity=0.339 Sum_probs=159.9
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-----EEeeCCCCCCCCeEEEEEeecC--CCcEEEEEe-C
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-----NSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS-C 1102 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l-----~~~~~h~~~~~~ItsL~fsn~~--dg~lLaTgS-~ 1102 (1262)
+..|.+.|.|.+|+|+|.++++|+.|.+|++..++...+- -.|.-|. +.|.+++|...+ .+.+|++++ .
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---gtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---GTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC---CceeeeEEecCCCcCceEEEecCCC
Confidence 3456788999999999999999999999999876643321 2355566 899999997322 245666654 4
Q ss_pred CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC-----
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS----- 1177 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h----- 1177 (1262)
|..|.+-|... |.. ++.+.+|++.|..+ ..|+ +-.+++|+.|++||.||+|-.. ++.++...
T Consensus 162 dc~iy~tdc~~--g~~-----~~a~sghtghilal---yswn--~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 162 DCKIYITDCGR--GQG-----FHALSGHTGHILAL---YSWN--GAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGG 228 (350)
T ss_pred cceEEEeecCC--CCc-----ceeecCCcccEEEE---EEec--CcEEEccCCCceEEEEeeeccc-eeeeccCcccCCC
Confidence 56666666654 433 57889999888762 5674 5677788999999999999999 99887531
Q ss_pred -CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1178 -SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1178 -s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
.++.|.++ +..|.|+++++|-.|.+..+||+|.+. ++.. +..|+..|.++.|+|+ ..+|+++|-| .|++-|
T Consensus 229 lessavaav-~vdpsgrll~sg~~dssc~lydirg~r-~iq~---f~phsadir~vrfsp~--a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 229 LESSAVAAV-AVDPSGRLLASGHADSSCMLYDIRGGR-MIQR---FHPHSADIRCVRFSPG--AHYLLTCSYDMKIKLTD 301 (350)
T ss_pred cccceeEEE-EECCCcceeeeccCCCceEEEEeeCCc-eeee---eCCCccceeEEEeCCC--ceEEEEecccceEEEee
Confidence 12348888 889999999999999999999999887 4433 4467899999999999 8999999955 999998
Q ss_pred ccccc
Q 000836 1256 LIYFL 1260 (1262)
Q Consensus 1256 Lryfl 1260 (1262)
+.-=|
T Consensus 302 lqgdl 306 (350)
T KOG0641|consen 302 LQGDL 306 (350)
T ss_pred cccch
Confidence 86433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=166.56 Aligned_cols=207 Identities=17% Similarity=0.265 Sum_probs=156.6
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE---EEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1033 RFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLL---NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg~~l---~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
.|+..=..++|+|.. ..|++|+-.+.|++|...+|.-. ..|.+|+ ..|-+++|+ +.....|++||.||+|||
T Consensus 209 ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~---~SVEDLqWS-ptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 209 GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT---KSVEDLQWS-PTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccc---cchhhhccC-CccCceEEeeecCceEEE
Confidence 455667899999943 35889998999999999887422 3466788 899999998 667789999999999999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeEeecCCCCCCeeEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~--~~v~ti~~hs~~~VtsLa 1186 (1262)
||++..+.+..+. .+.|.+.|+. +.|+.+...|++|++||+++|||+|.-+ +++.+|.-|... |++|.
T Consensus 285 WDiRs~~~~~~~~-----~kAh~sDVNV----ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p-Itsie 354 (440)
T KOG0302|consen 285 WDIRSGPKKAAVS-----TKAHNSDVNV----ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP-ITSIE 354 (440)
T ss_pred EEecCCCccceeE-----eeccCCceee----EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC-eeEEE
Confidence 9999844444332 3778888887 9999988889999999999999998743 288899999987 99995
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCc---------------eeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCce
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDM---------------LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLP 1251 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DGsVrIWDlrs~~~---------------~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I 1251 (1262)
+.+.....|++++.|..|.|||+..... +...+-.|+| ...|..|+||+. ...+|++.+-+-+
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~Q-iPG~lvsTa~dGf 432 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQ-IPGLLVSTAIDGF 432 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccC-CCCeEEEecccce
Confidence 5545567899999999999999864321 0011112322 346889999998 4456777765544
Q ss_pred EEEe
Q 000836 1252 SFSD 1255 (1262)
Q Consensus 1252 ~~WD 1255 (1262)
.+|.
T Consensus 433 nVfk 436 (440)
T KOG0302|consen 433 NVFK 436 (440)
T ss_pred eEEE
Confidence 4554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=179.37 Aligned_cols=196 Identities=20% Similarity=0.383 Sum_probs=157.9
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1040 TALLQ-PFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1040 sl~fs-pdg~~Lasgs~dg~I~VWD~~tg~------~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.+..+ |.+++|++||.||.|++|+..... .+.+++.|. ..|.++... .+++.|+++|.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIILC--GNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHhh--cCCCceEEecCCceEEEeecc
Confidence 44444 466789999999999999987532 467788898 899999886 788899999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEE-cCCCCEEEEEeCCCeEEEEeCCCCce-e--------eEeec-CCCCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQ-M--------VNPIP-SSSDCS 1181 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~w-sp~~~~Llsgg~Dg~IrIWDlrs~~~-~--------v~ti~-~hs~~~ 1181 (1262)
. +. .....++..|...|.+ +++ .++...+++||-|+.|.+||+.++.. . ...+. ++.++
T Consensus 104 ~--~~---~~c~stir~H~DYVkc----la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s- 173 (735)
T KOG0308|consen 104 K--DN---TFCMSTIRTHKDYVKC----LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS- 173 (735)
T ss_pred c--Cc---chhHhhhhcccchhee----eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc-
Confidence 6 21 1123678899999999 666 67777888889999999999997730 2 22233 55565
Q ss_pred eeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1182 VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
|.++ +..+.|.+|++|+..+.+++||.|+.+... ..+||...|..+..+++ |..++|||.| .|++|||.
T Consensus 174 iYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kim----kLrGHTdNVr~ll~~dD--Gt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 174 IYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIM----KLRGHTDNVRVLLVNDD--GTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred eeee-ecCCcceEEEecCcccceEEecccccccee----eeeccccceEEEEEcCC--CCeEeecCCCceEEeeecc
Confidence 9999 777888999999999999999999988443 34589999999999999 8888888855 99999985
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=155.03 Aligned_cols=217 Identities=16% Similarity=0.253 Sum_probs=160.9
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1029 ~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg----~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
.++..|..-|.++.|.+.|+.+|+|+.|++|+|||.+.. .+...++.|. +.|..+.|.++.-|..++++|.|+
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~---~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD---GSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC---CcEEEEEecCccccceEEEEecCC
Confidence 355667777999999999999999999999999996543 5777889999 899999999888899999999999
Q ss_pred eEEEEEcCCCCCcc---eEEeeeeeccCCCCcccccceeEEEcCC--CCEEEEEeCCCeEEEEeCCCCc-----------
Q 000836 1105 NIRIWKDYDQKDKQ---KLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQ----------- 1168 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~---~lvsa~~~l~~h~~~V~sv~l~v~wsp~--~~~Llsgg~Dg~IrIWDlrs~~----------- 1168 (1262)
+++||.-...+.+. +.+ ...++.+..+.|++ +.|.|. |-.+++++.||.+|||+.-...
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv-~~ttl~DsrssV~D----V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWV-RRTTLVDSRSSVTD----VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeE-EEEEeecCCcceeE----EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999863211111 111 11345566667777 777663 3356666888888888653210
Q ss_pred -------------------------------------------------------eeeEeecCCCCCCeeEEEEEcCC-C
Q 000836 1169 -------------------------------------------------------QMVNPIPSSSDCSISALTASQVH-G 1192 (1262)
Q Consensus 1169 -------------------------------------------------------~~v~ti~~hs~~~VtsLa~~s~~-g 1192 (1262)
..+.++++|.+. |++| +|.|+ |
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-I~di-~wAPn~G 236 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-IRDI-SWAPNIG 236 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-ceee-eeccccC
Confidence 023345566665 9999 55553 3
Q ss_pred ---CEEEEEECCCcEEEEECCCC----------------CceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceE
Q 000836 1193 ---GQLAAGFVDGSVRLYDVRTP----------------DMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPS 1252 (1262)
Q Consensus 1193 ---~lLatGs~DGsVrIWDlrs~----------------~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~ 1252 (1262)
.++++++.|| |+||.++.. +..+.....+.+|++.|..+.|+-. |..|+|.++| .++
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt--GtiLsStGdDG~VR 313 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT--GTILSSTGDDGCVR 313 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee--eeEEeecCCCceee
Confidence 4899999999 999998731 1123444457789999999999999 9999988865 999
Q ss_pred EEeccc
Q 000836 1253 FSDLIY 1258 (1262)
Q Consensus 1253 ~WDLry 1258 (1262)
+|.-.|
T Consensus 314 LWkany 319 (361)
T KOG2445|consen 314 LWKANY 319 (361)
T ss_pred ehhhhh
Confidence 998765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=156.45 Aligned_cols=209 Identities=14% Similarity=0.188 Sum_probs=159.1
Q ss_pred cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1032 TRFEKGTKTALLQP--FSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp--dg~~Lasgs~dg~I~VWD~~tg--~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
..|.++|..++|-. +|.+||+++.||.|.||.-++| .....+..|. ..|++++|-+..-|-.|++|+.||+|.
T Consensus 53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~---~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS---ASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc---ccceeecccccccceEEEEeeCCCcEE
Confidence 35778999999954 9999999999999999999987 3344566777 899999997445577899999999999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCC---C-----------CEEEEEeCCCeEEEEeCCCCce-eeE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---S-----------GYLYASGEVSSIMLWDLEKEQQ-MVN 1172 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~---~-----------~~Llsgg~Dg~IrIWDlrs~~~-~v~ 1172 (1262)
|.+.+.. +... .-+....|...|++ ++|.|. | ..+++||.|..|+||+.....+ .-.
T Consensus 130 vl~~~~~-g~w~---t~ki~~aH~~Gvns----Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~ 201 (299)
T KOG1332|consen 130 VLTYDSS-GGWT---TSKIVFAHEIGVNS----VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER 201 (299)
T ss_pred EEEEcCC-CCcc---chhhhhccccccce----eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh
Confidence 9999873 2221 11455789989998 899886 3 3589999999999999988652 334
Q ss_pred eecCCCCCCeeEEEEEcCCC---CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-C
Q 000836 1173 PIPSSSDCSISALTASQVHG---GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-K 1248 (1262)
Q Consensus 1173 ti~~hs~~~VtsLa~~s~~g---~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-d 1248 (1262)
++.+|.+. |+.+++.+..| ..+++|+.||+|.||..+..... .....+......+..+.|+.. |..|+.++ +
T Consensus 202 ~l~~H~dw-VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~-wk~tll~~f~~~~w~vSWS~s--Gn~LaVs~Gd 277 (299)
T KOG1332|consen 202 TLEGHKDW-VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP-WKKTLLEEFPDVVWRVSWSLS--GNILAVSGGD 277 (299)
T ss_pred hhhhcchh-hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc-ccccccccCCcceEEEEEecc--ccEEEEecCC
Confidence 58899997 99994444333 48999999999999988733211 111122223478999999999 88886655 5
Q ss_pred CceEEEe
Q 000836 1249 CLPSFSD 1255 (1262)
Q Consensus 1249 d~I~~WD 1255 (1262)
+.+.+|.
T Consensus 278 Nkvtlwk 284 (299)
T KOG1332|consen 278 NKVTLWK 284 (299)
T ss_pred cEEEEEE
Confidence 6999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=179.13 Aligned_cols=202 Identities=15% Similarity=0.280 Sum_probs=160.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CcEEEEeeCCCCCCCCeEEEEEeecCC
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------------DTLLNSFDNHDFPDKGISKLCLVNELD 1093 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t------------------g~~l~~~~~h~~~~~~ItsL~fsn~~d 1093 (1262)
..|.+.|+|+.|+|||.+||+|++|+.|.||+... -+++..+.+|. +.|.+++|+ ++
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---~DV~Dv~Ws--p~ 140 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---SDVLDVNWS--PD 140 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---CccceeccC--CC
Confidence 45778899999999999999999999999999872 13677788998 899999997 79
Q ss_pred CcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----
Q 000836 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----- 1168 (1262)
Q Consensus 1094 g~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~----- 1168 (1262)
+.+|++++.|++|.||+..+ . +.+ +.+.+|.+.|.+ +.|.|-|.++++-++|++|+||++..-.
T Consensus 141 ~~~lvS~s~DnsViiwn~~t--F--~~~---~vl~~H~s~VKG----vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKT--F--ELL---KVLRGHQSLVKG----VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccEEEEecccceEEEEcccc--c--eee---eeeecccccccc----eEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 99999999999999999976 2 333 678999999999 9999999999999999999999965421
Q ss_pred ----------------------------------------------eeeEeecCCCCCCeeEEEEEcCC-----------
Q 000836 1169 ----------------------------------------------QMVNPIPSSSDCSISALTASQVH----------- 1191 (1262)
Q Consensus 1169 ----------------------------------------------~~v~ti~~hs~~~VtsLa~~s~~----------- 1191 (1262)
+.-..+-+|... ++++ .|+|.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-~evv-rFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-VEVV-RFNPKLFERNNKNGTS 287 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCc-eEEE-EeChHHhccccccCCc
Confidence 012334567775 8888 55441
Q ss_pred --CC----EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1192 --GG----QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1192 --g~----lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
++ ++|+|+.|++|.||.....+.+.-.. . -....|..++|+|+ |..|..+| |+++.+..+
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-~--lf~~SI~DmsWspd--G~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-N--LFNKSIVDMSWSPD--GFSLFACSLDGTVALIHF 354 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhh-h--hhcCceeeeeEcCC--CCeEEEEecCCeEEEEEc
Confidence 11 78999999999999997666443222 2 22478999999999 77887777 667776543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-14 Score=154.41 Aligned_cols=210 Identities=11% Similarity=0.133 Sum_probs=164.9
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1027 ~~~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
+-++-.+|...|..++.+|-+..+++++.|++|++||++..++...+.... ..| .+|. ++|-++|+|...+.|
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi--~AfD--p~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPI--AAFD--PEGLIFALANGSELI 164 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---Ccc--eeEC--CCCcEEEEecCCCeE
Confidence 455667889999999999999999999999999999999887776665544 333 6785 899999999988899
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC-eeEE
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS-ISAL 1185 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~-VtsL 1185 (1262)
++||++.-+..+-.. +....+.....+. +.|+++|..|+.+...+.+.+.|.-++. ...++..+.... ++--
T Consensus 165 kLyD~Rs~dkgPF~t--f~i~~~~~~ew~~----l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTT--FSITDNDEAEWTD----LEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred EEEEecccCCCCcee--EccCCCCccceee----eEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccCCCCccee
Confidence 999998743333211 1222233444555 9999999999999999999999999999 999988766542 3434
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
+++.|+++++++|+.||+|.+|+++++. .+..++.. +.+++.++.|+|. ..+++|++. .+.||-.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~-~v~~~~~~--~~~~~~~~~fnP~--~~mf~sa~s-~l~fw~p 302 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGK-KVAVLRGP--NGGPVSCVRFNPR--YAMFVSASS-NLVFWLP 302 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCc-EeeEecCC--CCCCccccccCCc--eeeeeecCc-eEEEEec
Confidence 5789999999999999999999999888 44444333 5789999999999 777777765 4667743
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=173.51 Aligned_cols=205 Identities=16% Similarity=0.174 Sum_probs=165.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCC-CcEEEEEeCCCeEEEEEcCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~d-g~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.++.+++.+|+|++||+|+.-|+|+|||+.+.+.+..+.+|. ..|.|+.|+++.- ..+|++++.|..|.|||...
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 569999999999999999999999999999988889999999 8999999986543 36889999999999999853
Q ss_pred CCcceEEeeeeeccCCCCccccc---------------------------------------------ceeEEEcCCCCE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCS---------------------------------------------NVVVDWQQQSGY 1149 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv---------------------------------------------~l~v~wsp~~~~ 1149 (1262)
+..++ +++.+|...|+++ -..++..|..++
T Consensus 536 --ny~l~---qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 536 --NYDLV---QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred --ccchh---hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 11111 2222222222211 012566677889
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEeecCC---CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCC
Q 000836 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSS---SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1262)
Q Consensus 1150 Llsgg~Dg~IrIWDlrs~~~~v~ti~~h---s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~ 1226 (1262)
+++++.|+.|+|||+.+++ .++.|++. .+. ...+ ...|.|.++++.+.|.++.++|..+++.+. ...||.
T Consensus 611 v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~-lIKv-~lDPSgiY~atScsdktl~~~Df~sgEcvA----~m~GHs 683 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGD-LIKV-ILDPSGIYLATSCSDKTLCFVDFVSGECVA----QMTGHS 683 (1080)
T ss_pred EEEEecccceEEEeccccc-eeeeecccccCCCc-eEEE-EECCCccEEEEeecCCceEEEEeccchhhh----hhcCcc
Confidence 9999999999999999999 99999763 343 5556 678999999999999999999999999544 445899
Q ss_pred CCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1227 ERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1227 ~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
.-|+++.|.++ .++|++.+.| .|.+|.+..
T Consensus 684 E~VTG~kF~nD--CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 684 EAVTGVKFLND--CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeeeeeccc--chhheeecCCceEEEEECch
Confidence 99999999999 8999998855 999998753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-15 Score=166.66 Aligned_cols=199 Identities=16% Similarity=0.252 Sum_probs=166.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe------------------eCCCCCCCCeEEEEEeecCC
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF------------------DNHDFPDKGISKLCLVNELD 1093 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~------------------~~h~~~~~~ItsL~fsn~~d 1093 (1262)
.+|...|.+|+++|++.+.++++.+++|.-|++.+|+....+ +.|. ..|.+++.+ +|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~---keil~~avS--~D 213 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV---KEILTLAVS--SD 213 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc---ceeEEEEEc--CC
Confidence 457788999999999999999999999999999988644211 1333 678999997 89
Q ss_pred CcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe
Q 000836 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1173 (1262)
Q Consensus 1094 g~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t 1173 (1262)
+.+|++|+.|..|.||+..+ .+. .+.+++|...|.+ ++|......+++++.|+.|++|++.... .+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t--~eh-----v~~~~ghr~~V~~----L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDT--LEH-----VKVFKGHRGAVSS----LAFRKGTSELYSASADRSVKVWSIDQLS-YVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcc--cch-----hhcccccccceee----eeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence 99999999999999999987 332 2568999999998 8888888899999999999999999999 9999
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceE
Q 000836 1174 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPS 1252 (1262)
Q Consensus 1174 i~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~ 1252 (1262)
+.+|.+. |.+| .....++.+.+|+.|+++++|++.....+ .+.+|.+.+-|++|-.+ .+++|||++ .|.
T Consensus 282 lyGHqd~-v~~I-daL~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In~---~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDG-VLGI-DALSRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFIND---EHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccc-eeee-chhcccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEecc---cceeeccCCceEE
Confidence 9999998 9999 44456788888999999999999433211 34566789999999755 589999977 999
Q ss_pred EEecc
Q 000836 1253 FSDLI 1257 (1262)
Q Consensus 1253 ~WDLr 1257 (1262)
+|++.
T Consensus 352 LWs~~ 356 (479)
T KOG0299|consen 352 LWSLL 356 (479)
T ss_pred Eeeec
Confidence 99974
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=164.45 Aligned_cols=197 Identities=13% Similarity=0.225 Sum_probs=156.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.+.|+.++|.+++.++++++.|+++++|+....+...++.+|. ..|+++.|. .....+++|+.|.+|++||+..
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt---dkVt~ak~~--~~~~~vVsgs~DRtiK~WDl~k- 292 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT---DKVTAAKFK--LSHSRVVSGSADRTIKLWDLQK- 292 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc---cceeeehhh--ccccceeeccccchhhhhhhhh-
Confidence 4679999999999999999999999999999999999999999 899999996 4444599999999999999965
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
..+. +++. ..+.+.. |... ...+++|-.|++||.||+++.. ++..++.+.. |+++ ..+.+|..
T Consensus 293 -~~C~-----kt~l-~~S~cnD----I~~~--~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg~--vtSl-~ls~~g~~ 355 (459)
T KOG0288|consen 293 -AYCS-----KTVL-PGSQCND----IVCS--ISDVISGHFDKKVRFWDIRSAD-KTRSVPLGGR--VTSL-DLSMDGLE 355 (459)
T ss_pred -hhee-----cccc-ccccccc----eEec--ceeeeecccccceEEEeccCCc-eeeEeecCcc--eeeE-eeccCCeE
Confidence 2221 1111 1122333 2222 4456667779999999999999 9999999874 9999 88899999
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCC-CCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~-gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+.+++.|.++.+.|+|+.+ +...+.... .....++.+.|+|+ +.++++||.| .+++|++.
T Consensus 356 lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd--~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 356 LLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPD--GSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred EeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCC--CceeeeccCCCcEEEEEcc
Confidence 9999999999999999877 444442211 12234899999999 9999999955 99999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=143.83 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=152.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------C--------cEE-EEeeCCCCCCCCeEEEEEeecCCCcEEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEE------D--------TLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVA 1100 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t------g--------~~l-~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg 1100 (1262)
..|.+++|||.|.+.++|+...+++|.-+.. + ..+ ..-+.|. +.|.|.+|+ ++|.+++||
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk---gsiyc~~ws--~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK---GSIYCTAWS--PCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---ccEEEEEec--CccCeEEec
Confidence 5689999999999999999999999875532 1 111 1223344 899999998 999999999
Q ss_pred eCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-e-CCCeEEEEeCCCCceeeEeecCCC
Q 000836 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-G-EVSSIMLWDLEKEQQMVNPIPSSS 1178 (1262)
Q Consensus 1101 S~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g-~Dg~IrIWDlrs~~~~v~ti~~hs 1178 (1262)
|.|.+|++..... ..+..+..--.+.-|.+.|+.+.+ ++=...++.|+++ | .|..|.+=|..+++ ..+.+.+|.
T Consensus 108 sndk~ik~l~fn~--dt~~~~g~dle~nmhdgtirdl~f-ld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sght 183 (350)
T KOG0641|consen 108 SNDKTIKVLPFNA--DTCNATGHDLEFNMHDGTIRDLAF-LDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHT 183 (350)
T ss_pred CCCceEEEEeccc--ccccccCcceeeeecCCceeeeEE-ecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCc
Confidence 9999999987764 222222111234557788888333 2223344555544 3 36677788999999 999999999
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecC-CCC---CCCCeEEEEEecCCCCCEEEEecCC-ceEE
Q 000836 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP-HTQ---QVERVVGISFQPGLDPAKVNGTPKC-LPSF 1253 (1262)
Q Consensus 1179 ~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~-~~g---H~~~V~slafsp~~~g~~LaSgSdd-~I~~ 1253 (1262)
+. |.++- +-+|.+|++|+.|.+||+||+|-.. ++.++.+ +.+ -++.|.+++..|. |+.|++|-.| ...+
T Consensus 184 gh-ilaly--swn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps--grll~sg~~dssc~l 257 (350)
T KOG0641|consen 184 GH-ILALY--SWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS--GRLLASGHADSSCML 257 (350)
T ss_pred cc-EEEEE--EecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC--cceeeeccCCCceEE
Confidence 97 88884 4478999999999999999999776 4444422 111 1357999999999 9999999977 8889
Q ss_pred Eecc
Q 000836 1254 SDLI 1257 (1262)
Q Consensus 1254 WDLr 1257 (1262)
+|+|
T Consensus 258 ydir 261 (350)
T KOG0641|consen 258 YDIR 261 (350)
T ss_pred EEee
Confidence 9986
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=169.63 Aligned_cols=192 Identities=18% Similarity=0.268 Sum_probs=156.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~ 1118 (1262)
.-++|+ ..+.|++|. ...|.+|+..++....-...+. ..|+++.|+ ++|.+|++|..+|.|.|||....
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~---~~vtSv~ws--~~G~~LavG~~~g~v~iwD~~~~---- 249 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGE---ELVTSVKWS--PDGSHLAVGTSDGTVQIWDVKEQ---- 249 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCC---CceEEEEEC--CCCCEEEEeecCCeEEEEehhhc----
Confidence 456777 455677776 6789999999998666555555 789999997 89999999999999999999761
Q ss_pred eEEeeeeeccC-CCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEE
Q 000836 1119 KLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1197 (1262)
Q Consensus 1119 ~lvsa~~~l~~-h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLat 1197 (1262)
+. .+.+.+ |...|-+ ++|. +..+.+|+.|+.|..+|++..+..+.++.+|... |..+ .|++++.++++
T Consensus 250 k~---~~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe-VCgL-kws~d~~~lAS 318 (484)
T KOG0305|consen 250 KK---TRTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE-VCGL-KWSPDGNQLAS 318 (484)
T ss_pred cc---cccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce-eeee-EECCCCCeecc
Confidence 11 155666 8888877 9997 6778888899999999999988334447888886 9999 89999999999
Q ss_pred EECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CC-ceEEEecc
Q 000836 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KC-LPSFSDLI 1257 (1262)
Q Consensus 1198 Gs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd-~I~~WDLr 1257 (1262)
|+.|+.|.|||....+... .+.+|.+.|..++|+|. ....||+|+ .| .|+|||..
T Consensus 319 GgnDN~~~Iwd~~~~~p~~----~~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLSPEPKF----TFTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred CCCccceEeccCCCccccE----EEeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcC
Confidence 9999999999997665333 34478899999999999 677899987 33 99999975
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-15 Score=157.04 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=169.7
Q ss_pred cCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1032 TRFEKGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp---dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
..|..+|..++|+| +|-+|++++.|+.-.+-+-++|.-+.+|.+|. +.|++.+.. .+...-++++.|-+-+|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk---gavw~~~l~--~na~~aasaaadftakv 85 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK---GAVWSATLN--KNATRAASAAADFTAKV 85 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC---cceeeeecC--chhhhhhhhcccchhhh
Confidence 46778899999986 78899999999999999999999999999999 899999885 56677889999999999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
||.-+ |... .. ..|...|.. ++|+++..+|++||.++.+||+|+++.+.+...+.+|.++ |..+.++
T Consensus 86 w~a~t--gdel-----hs-f~hkhivk~----~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc 152 (334)
T KOG0278|consen 86 WDAVT--GDEL-----HS-FEHKHIVKA----VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWC 152 (334)
T ss_pred hhhhh--hhhh-----hh-hhhhheeee----EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEe
Confidence 99876 3321 22 357777888 9999999999999999999999999987688889999998 9888454
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecccc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIYF 1259 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLryf 1259 (1262)
+ ..+.|++...|++||+||.|++. .+..+ .+ ..+|+++..+++ |++|.++....|+|||...|
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt-~v~sL-~~---~s~VtSlEvs~d--G~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGT-EVQSL-EF---NSPVTSLEVSQD--GRILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCc-EEEEE-ec---CCCCcceeeccC--CCEEEEecCceeEEeccccc
Confidence 4 55667777999999999999998 45554 23 378999999999 88888887779999997654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=149.35 Aligned_cols=197 Identities=14% Similarity=0.226 Sum_probs=157.5
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1033 RFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
+|+..|-.++|+| ..+.+++++.|.+|++||...+++...+.+.. +.|. +.|+ ++|.++++|+.|..|.+.|.
T Consensus 62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~---eni~-i~ws--p~g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG---ENIN-ITWS--PDGEYIAVGNKDDRITFIDA 135 (313)
T ss_pred CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC---cceE-EEEc--CCCCEEEEecCcccEEEEEe
Confidence 4566788888887 56789999999999999999999999887665 5565 7786 89999999999999999888
Q ss_pred CCCC-----------------------------CcceE-----EeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCC
Q 000836 1112 YDQK-----------------------------DKQKL-----VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157 (1262)
Q Consensus 1112 ~~~~-----------------------------g~~~l-----vsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg 1157 (1262)
+..+ |..++ ......++.|.... +++.|+|+|.++++|+.|.
T Consensus 136 r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC----icI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 136 RTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC----ICIEFDPDGRYFATGSADA 211 (313)
T ss_pred cccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce----EEEEECCCCceEeeccccc
Confidence 6411 10110 01123344555433 3499999999999999999
Q ss_pred eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.+.+||+..-- |++.|.-+.-. |..+ +|+.+|++||+|+.|..|-|=++.++..+ ..+ .+.++...|+|||.
T Consensus 212 lvSLWD~~ELi-C~R~isRldwp-VRTl-SFS~dg~~lASaSEDh~IDIA~vetGd~~-~eI----~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 212 LVSLWDVDELI-CERCISRLDWP-VRTL-SFSHDGRMLASASEDHFIDIAEVETGDRV-WEI----PCEGPTFTVAWHPK 283 (313)
T ss_pred eeeccChhHhh-hheeeccccCc-eEEE-EeccCcceeeccCccceEEeEecccCCeE-EEe----eccCCceeEEecCC
Confidence 99999999988 99999888775 9999 99999999999999999999999999843 222 34688999999999
Q ss_pred CCCCEEEEecCC
Q 000836 1238 LDPAKVNGTPKC 1249 (1262)
Q Consensus 1238 ~~g~~LaSgSdd 1249 (1262)
..+|+-++++
T Consensus 284 --~~LLAyA~dd 293 (313)
T KOG1407|consen 284 --RPLLAYACDD 293 (313)
T ss_pred --CceeeEEecC
Confidence 8888877643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=163.19 Aligned_cols=209 Identities=17% Similarity=0.222 Sum_probs=160.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.|+.-|.++.++...++++||+ .|.|+|||+... ..+..+..-+ ++.-|.++... +||+.|++|+.-.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~--pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLL--PDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC-cccceeeeEec--CCCceEEeccccceeeee
Confidence 4677788999999999999998 899999999742 2333333332 23678888886 899999999999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
|+... ...+. ..+......... ++.+|+.+..+++..||.|.|||++... .+++|++|.++ +.|| ..+
T Consensus 493 DLAap--Tprik---aeltssapaCyA----La~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG-ascI-dis 560 (705)
T KOG0639|consen 493 DLAAP--TPRIK---AELTSSAPACYA----LAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI-DIS 560 (705)
T ss_pred eccCC--Ccchh---hhcCCcchhhhh----hhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC-ceeE-Eec
Confidence 99762 11111 112222223334 6778999999999999999999999999 99999999998 9999 889
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCcee-----------------------------eeec-------CCCCCCCCeEEEE
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLV-----------------------------CSTR-------PHTQQVERVVGIS 1233 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v-----------------------------~~~~-------~~~gH~~~V~sla 1233 (1262)
.+|..|-||+-|.+||.||+|.+..+. ..+. ...-|.+.|.++.
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLK 640 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEE
Confidence 999999999999999999999754211 0000 0113678899999
Q ss_pred EecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1234 FQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1234 fsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
|.+. |+++++.+.| .+..|-..|-
T Consensus 641 Fa~c--GkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 641 FAYC--GKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eccc--CceeeecCchhhhhhccCccc
Confidence 9999 9999998854 8888987774
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=161.88 Aligned_cols=207 Identities=16% Similarity=0.196 Sum_probs=156.6
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1034 FEKGTKTALLQPFSP--IVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~--~Lasgs~dg~I~VWD~~tg----~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
+..+|++++|||..+ ++++|+..|+|-+||+.+. ..+..|..|. ..|++|.|+ +.+...+++.|.||+||
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---~~Vs~l~F~-P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---GPVSGLKFS-PANTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---ccccceEec-CCChhheeeeccCceee
Confidence 457899999999655 8888999999999999532 3344566666 899999997 77888999999999999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
.-|+.. ...+.+ ..+..-.....+ ++++.....++.++.-|...+||.|+.......+..|... |++|+.
T Consensus 261 ~~D~~~--~i~e~v---~s~~~d~~~fs~----~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK-I~sv~~ 330 (498)
T KOG4328|consen 261 LQDFEG--NISEEV---LSLDTDNIWFSS----LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK-ITSVAL 330 (498)
T ss_pred eeeecc--hhhHHH---hhcCccceeeee----ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc-cceeec
Confidence 999975 222222 122222233334 7778888889999888899999999987336667778775 999955
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCceee-eecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v~-~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
.+.+..+|+||+.|++++|||+|.-..... .+ ..-.|...|.++.|+|. +|. |+|.+ |+.|++||..
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs-~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPS-GGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCC-CCc-eEeeccCCceEEeecc
Confidence 555677999999999999999996432111 22 22368899999999999 555 66666 6699999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-15 Score=161.99 Aligned_cols=207 Identities=15% Similarity=0.253 Sum_probs=160.8
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
..|..+|.|++=||.. ..+++|+.||.|+|||+.+..+..+|+.|. +.|..|++. ...+++++.|.+|+.|.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~----~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVT----QTSFFTVGDDKTVKQWK 135 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEec----ccceEEecCCcceeeee
Confidence 4677899999999977 689999999999999999999999999999 899999995 27789999999999998
Q ss_pred cCCCC-----Cc------------------ceEEeeee--------eccCCCCcccccceeEEEcCCCCEEEE-EeCCCe
Q 000836 1111 DYDQK-----DK------------------QKLVTAFS--------SIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSS 1158 (1262)
Q Consensus 1111 ~~~~~-----g~------------------~~lvsa~~--------~l~~h~~~V~sv~l~v~wsp~~~~Lls-gg~Dg~ 1158 (1262)
+.... ++ .+.+.-|. .+.-..+.+.+ +.|+|....|++ ++.|+.
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~s----vkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISS----VKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeE----EecCCCcchheeeeccCCc
Confidence 54200 00 00011111 11111122333 778886665554 468999
Q ss_pred EEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCC
Q 000836 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1262)
Q Consensus 1159 IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~ 1238 (1262)
|.++|+|... +++.+..... -+.| +|+|.+-.|++|..|..+..||+|.....+ ..+.+|.+.|.+|+|+|.
T Consensus 212 IvLyD~R~~~-Pl~KVi~~mR--TN~I-swnPeafnF~~a~ED~nlY~~DmR~l~~p~---~v~~dhvsAV~dVdfspt- 283 (433)
T KOG0268|consen 212 IVLYDLRQAS-PLKKVILTMR--TNTI-CWNPEAFNFVAANEDHNLYTYDMRNLSRPL---NVHKDHVSAVMDVDFSPT- 283 (433)
T ss_pred eEEEecccCC-ccceeeeecc--ccce-ecCccccceeeccccccceehhhhhhcccc---hhhcccceeEEEeccCCC-
Confidence 9999999999 8887765443 4667 788899999999999999999999776444 467788999999999999
Q ss_pred CCCEEEEecCC-ceEEEeccc
Q 000836 1239 DPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1239 ~g~~LaSgSdd-~I~~WDLry 1258 (1262)
|+.++|||-| +|+++..+.
T Consensus 284 -G~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 284 -GQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -cchhccccccceEEEeecCC
Confidence 9999999966 999987653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=166.01 Aligned_cols=197 Identities=19% Similarity=0.289 Sum_probs=161.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.+.. +.|+++.|. .++..+++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~d--~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL---GNITSIDFD--SDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC---CCcceeeec--CCCceEEeecCCCceeeeec
Confidence 45678899999998999999999999999998665 566677766 889999995 88999999999999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.. ... ..++.+|...|++ +.|......+++|+.|.+|+.||+.+.. |..++...+. +..| ...
T Consensus 249 d~--~r~-----~~TLsGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S~--cnDI-~~~-- 311 (459)
T KOG0288|consen 249 DS--LRL-----RHTLSGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGSQ--CNDI-VCS-- 311 (459)
T ss_pred cc--hhh-----hhhhcccccceee----ehhhccccceeeccccchhhhhhhhhhh-eecccccccc--ccce-Eec--
Confidence 76 222 2678999999999 7777766668899999999999999998 9888765444 5666 332
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecccc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIYF 1259 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLryf 1259 (1262)
+..+++|..|++||.||.|+.. +.... .. .+.|+++..+++ |..|.+++ +|++.+.|+|-+
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~-~~~sv-~~---gg~vtSl~ls~~--g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSAD-KTRSV-PL---GGRVTSLDLSMD--GLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred ceeeeecccccceEEEeccCCc-eeeEe-ec---CcceeeEeeccC--CeEEeeecCCCceeeeecccc
Confidence 6789999999999999999887 44333 23 258999999999 77887777 669999998854
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=165.81 Aligned_cols=191 Identities=13% Similarity=0.226 Sum_probs=158.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.+|...|.|+....++. +++|+.|.+++||-.. ++...+++|. ..|+++... +++ .++|||.|.+||+|.-
T Consensus 98 kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~---asVWAv~~l--~e~-~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHT---ASVWAVASL--PEN-TYVTGSADKTIKLWKG 168 (745)
T ss_pred hccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcc---hheeeeeec--CCC-cEEeccCcceeeeccC
Confidence 46778899998887777 9999999999999865 5666799999 899999987 444 8999999999999997
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.. . .+++.+|++.|++ ++.-+ +..+++++.||.|+.||+ ++. ++..+.+|+.. |.++ ....+
T Consensus 169 ~~----~-----l~tf~gHtD~VRg----L~vl~-~~~flScsNDg~Ir~w~~-~ge-~l~~~~ghtn~-vYsi-s~~~~ 230 (745)
T KOG0301|consen 169 GT----L-----LKTFSGHTDCVRG----LAVLD-DSHFLSCSNDGSIRLWDL-DGE-VLLEMHGHTNF-VYSI-SMALS 230 (745)
T ss_pred Cc----h-----hhhhccchhheee----eEEec-CCCeEeecCCceEEEEec-cCc-eeeeeeccceE-EEEE-EecCC
Confidence 43 2 3788999999999 44444 668899999999999999 666 89999999997 9999 55667
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
+..+++++.|+++|||+.. + +...+ .+. ...|+++.+-++ |..++.|||+.+++|-..
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e-~~q~I-~lP--ttsiWsa~~L~N--gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--E-CVQVI-TLP--TTSIWSAKVLLN--GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCeEEEecCCceEEEeecC--c-eEEEE-ecC--ccceEEEEEeeC--CCEEEeccCceEEEEEec
Confidence 7899999999999999987 3 44444 333 357899999888 888888889999998654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-14 Score=152.93 Aligned_cols=206 Identities=15% Similarity=0.198 Sum_probs=166.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|.++.|-..|+.+++++.|.+-.+||+++|+.++.+.+|. ...+.++-. +...+++|.|.|.+.|+||.+
T Consensus 270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd---~ELtHcstH--ptQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD---SELTHCSTH--PTQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc---hhccccccC--CcceEEEEeccCceeEeccch
Confidence 366779999999999999999999999999999999999999999 777766664 788999999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. . +.+...+++|...|++ +.|.. +..+++|++|.+|+|||++....++.+|...+. ++.+ ..+..+
T Consensus 345 e---a---I~sV~VFQGHtdtVTS----~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~--~NRv-avs~g~ 410 (481)
T KOG0300|consen 345 E---A---IQSVAVFQGHTDTVTS----VVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP--ANRV-AVSKGH 410 (481)
T ss_pred h---h---cceeeeecccccceeE----EEEec-CCceeecCCCceEEEeeeccccCcceeeecCCc--ccee-EeecCC
Confidence 5 1 2233678999999998 67755 678899999999999999998768899987654 7888 667777
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeec-CCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~-~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
.+|+.-..+..||+||+.... +.+..+ .-++|...|+|.+|...-.-.-|.+++=| .+.-|.+..
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 899999999999999997544 332222 45689999999999765112346666644 777787653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=154.60 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.|...|+-+.|+++|++||+|+.|.+..||++... +...++.+|. .+|.-+.|+ ||.++|++|+.|..+++|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~wS--PDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMWS--PDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc---CceEEEEEC--CCCCeEEecCchHheeec
Confidence 46678999999999999999999999999988654 4577888998 899999998 899999999999999999
Q ss_pred EcCCCCCcceEEeeeeec-cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l-~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
|..+ |... ..+ .++...+.+ ++|.|+|..+++|+.|+.|..||+..+. +....+-....|.++ +.
T Consensus 297 Dv~t--gd~~-----~~y~~~~~~S~~s----c~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl-ai 362 (519)
T KOG0293|consen 297 DVDT--GDLR-----HLYPSGLGFSVSS----CAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL-AI 362 (519)
T ss_pred cCCc--chhh-----hhcccCcCCCcce----eEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE-EE
Confidence 9987 4331 111 223455666 9999999999999999999999998665 555665555569999 88
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
.++|..+++.+.|..|++|+..+... .... .. ..+|+++..+.+ +++.+..= +..+.+||+.
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~li-se---~~~its~~iS~d--~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVD-RGLI-SE---EQPITSFSISKD--GKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhh-hccc-cc---cCceeEEEEcCC--CcEEEEEcccCeeEEeecc
Confidence 99999999999999999999876542 2122 12 368999999999 66665554 5599999974
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=164.03 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=175.7
Q ss_pred CCccccccCCC--------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcE
Q 000836 1025 NPIACWDTRFE--------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL 1096 (1262)
Q Consensus 1025 ~~~~~w~~~~~--------~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~l 1096 (1262)
..+..|+.... .-+.+..|-|.+.++++|...|.+.|||+.+...+.++++|. +.|++++.+ +|+..
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---gaIWsi~~~--pD~~g 468 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD---GAIWSISLS--PDNKG 468 (888)
T ss_pred CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc---cceeeeeec--CCCCc
Confidence 45677887743 336678899999999999999999999999999999999999 999999997 89999
Q ss_pred EEEEeCCCeEEEEEcCCCC---CcceEEeee---eeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 000836 1097 LLVASCNGNIRIWKDYDQK---DKQKLVTAF---SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1097 LaTgS~DG~IrIWD~~~~~---g~~~lvsa~---~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~ 1170 (1262)
++|||.|.+|++||..... +...-+-.. +++ .....|.+ +.++|++.+++++=-|.+|+||-+++-+ -
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~----v~~Spdgk~LaVsLLdnTVkVyflDtlK-F 542 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLC----VSVSPDGKLLAVSLLDNTVKVYFLDTLK-F 542 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEE----EEEcCCCcEEEEEeccCeEEEEEeccee-e
Confidence 9999999999999985421 111110000 111 12234445 9999999999999999999999999999 8
Q ss_pred eEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-
Q 000836 1171 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC- 1249 (1262)
Q Consensus 1171 v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd- 1249 (1262)
..++.+|.-. |.|| ..++++.+++||+.|..|+||-+.-+++-. .+-+|...|.+|.|.|. ...+.|+|.|
T Consensus 543 flsLYGHkLP-V~sm-DIS~DSklivTgSADKnVKiWGLdFGDCHK----S~fAHdDSvm~V~F~P~--~~~FFt~gKD~ 614 (888)
T KOG0306|consen 543 FLSLYGHKLP-VLSM-DISPDSKLIVTGSADKNVKIWGLDFGDCHK----SFFAHDDSVMSVQFLPK--THLFFTCGKDG 614 (888)
T ss_pred eeeecccccc-eeEE-eccCCcCeEEeccCCCceEEeccccchhhh----hhhcccCceeEEEEccc--ceeEEEecCcc
Confidence 8999999986 9999 889999999999999999999998888332 34477899999999999 7778888855
Q ss_pred ceEEEecccc
Q 000836 1250 LPSFSDLIYF 1259 (1262)
Q Consensus 1250 ~I~~WDLryf 1259 (1262)
.++.||-..|
T Consensus 615 kvKqWDg~kF 624 (888)
T KOG0306|consen 615 KVKQWDGEKF 624 (888)
T ss_pred eEEeechhhh
Confidence 9999985443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=158.99 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=158.8
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
..|...|..+.|+- ..+.||+|+.|.+|++||+.+|++..++..|. +.|.++.|. +.....|++||.||+|++.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG---KKVQTLEWH-PYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC---CceeEEEec-CCCceEEEeccccceEEeee
Confidence 45666778888876 45689999999999999999999999999887 899999995 67889999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
.+.. +. .-..|+. .+.|-. +.|.+... .++++.+||+|+-+|+|...+++.++.+|.+. |.+|+...
T Consensus 316 ~R~~-~~--s~~~wk~----~g~VEk----v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~-ISgl~~n~ 383 (463)
T KOG0270|consen 316 CRDP-SN--SGKEWKF----DGEVEK----VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE-ISGLSVNI 383 (463)
T ss_pred ccCc-cc--cCceEEe----ccceEE----EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC-cceEEecC
Confidence 9851 11 1112332 234555 88988766 55666789999999999974499999999997 99996555
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCc-eeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~-~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
....++++++.|+.|++|++..... .+. .+.-.-+...|.++.|+ ....|+.|+.. .+++||+.
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~---~~~~~~~rl~c~~~~~~-~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPKSVK---EHSFKLGRLHCFALDPD-VAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCcccc---cccccccceeecccCCC-cceEEEecCccceEEEeecc
Confidence 6677999999999999999875431 111 11111234678888888 45577777755 79999974
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=164.73 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=151.9
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcce
Q 000836 1041 ALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK 1119 (1262)
Q Consensus 1041 l~fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~ 1119 (1262)
++|-+ ++..+++|+.|++|.+|......++.++.+|. ..|++++.. .++. +++||.|.+++||.... .
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~---snVC~ls~~--~~~~-~iSgSWD~TakvW~~~~----l- 132 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK---SNVCSLSIG--EDGT-LISGSWDSTAKVWRIGE----L- 132 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccc---cceeeeecC--CcCc-eEecccccceEEecchh----h-
Confidence 66665 44569999999999999999999999999999 899999874 4554 99999999999999854 2
Q ss_pred EEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEE
Q 000836 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1262)
Q Consensus 1120 lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs 1199 (1262)
+ ..+.+|...|+. +..-|.+ .+++||.|++||+|.- ++ ++++|.+|.+. |+.++.. ++.-|++++
T Consensus 133 -~---~~l~gH~asVWA----v~~l~e~-~~vTgsaDKtIklWk~--~~-~l~tf~gHtD~-VRgL~vl--~~~~flScs 197 (745)
T KOG0301|consen 133 -V---YSLQGHTASVWA----VASLPEN-TYVTGSADKTIKLWKG--GT-LLKTFSGHTDC-VRGLAVL--DDSHFLSCS 197 (745)
T ss_pred -h---cccCCcchheee----eeecCCC-cEEeccCcceeeeccC--Cc-hhhhhccchhh-eeeeEEe--cCCCeEeec
Confidence 1 347899999998 5555655 8999999999999975 66 88999999996 9999444 345688999
Q ss_pred CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1200 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1200 ~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.||.|+.||+ +++.+. .+.||++.|.++....+ +..++|+++| ++++|+..
T Consensus 198 NDg~Ir~w~~-~ge~l~----~~~ghtn~vYsis~~~~--~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLL----EMHGHTNFVYSISMALS--DGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CCceEEEEec-cCceee----eeeccceEEEEEEecCC--CCeEEEecCCceEEEeecC
Confidence 9999999999 566333 45588999999997766 6788999977 99999853
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=161.49 Aligned_cols=215 Identities=16% Similarity=0.240 Sum_probs=149.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~--~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
.|...|..+.|-|....|++++.|.+|++||+++++++.. +.+|. +.|.+++|. ..+...|++|+.||.|.|||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~---~SvkS~cf~-~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT---GSVKSECFM-PTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc---cccchhhhc-cCCCcceeeccCCCcEEEEE
Confidence 4567799999999777999999999999999999888766 88999 899999997 77889999999999999999
Q ss_pred cCCCC--Ccc------------------eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCCce
Q 000836 1111 DYDQK--DKQ------------------KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQ 1169 (1262)
Q Consensus 1111 ~~~~~--g~~------------------~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~~ 1169 (1262)
++-.. ... .+....+....+...|.+. +.+.+.+|...|+++|. |+.|+|||+++..
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss-vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~- 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS-VTVVLFKDESTLASAGAADSTIKVWDLRKNY- 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee-eEEEEEeccceeeeccCCCcceEEEeecccc-
Confidence 97411 000 0000011222333334432 22445578899999977 9999999999864
Q ss_pred ee--------EeecCCCCC--CeeEE---------------------------------------------EEEcCCCCE
Q 000836 1170 MV--------NPIPSSSDC--SISAL---------------------------------------------TASQVHGGQ 1194 (1262)
Q Consensus 1170 ~v--------~ti~~hs~~--~VtsL---------------------------------------------a~~s~~g~l 1194 (1262)
+. ..++.|... .++++ ...++++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 11 111112000 12222 123566777
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+++|+.|+.+.+|.+.+.+.... .+.||.-.|++|+|.|. .-.-++++++| .+++|++-
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~---~l~Ght~eVt~V~w~pS-~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPA---LLLGHTREVTTVRWLPS-ATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred EeccCCCcceeeeeecCccCChh---hhhCcceEEEEEeeccc-cCCCceeeccCcceEEEecc
Confidence 77777777777777776653321 34578899999999988 44456777877 99999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=156.79 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=152.9
Q ss_pred CCeEEEEEcCC-------CCEEEEEeCCCcEEEEECCCC---cEE------------------EEeeCCCCCCCCeEEEE
Q 000836 1036 KGTKTALLQPF-------SPIVVAADENERIKIWNYEED---TLL------------------NSFDNHDFPDKGISKLC 1087 (1262)
Q Consensus 1036 ~~V~sl~fspd-------g~~Lasgs~dg~I~VWD~~tg---~~l------------------~~~~~h~~~~~~ItsL~ 1087 (1262)
.-+.|+.|... |+++|.|+-+..|.|||+.-- .+. ..-.+|+ ..|.++.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT---davl~Ls 250 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT---DAVLALS 250 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch---HHHHHHH
Confidence 45678888654 569999999999999998621 000 0112355 6677888
Q ss_pred EeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 000836 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEK 1166 (1262)
Q Consensus 1088 fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs 1166 (1262)
|. ..-.+.|++||.|.+|++||+.+ +++. +++..|...|.+ +.|++... .|++|+.|++|++.|.|.
T Consensus 251 ~n-~~~~nVLaSgsaD~TV~lWD~~~--g~p~-----~s~~~~~k~Vq~----l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 251 WN-RNFRNVLASGSADKTVKLWDVDT--GKPK-----SSITHHGKKVQT----LEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred hc-cccceeEEecCCCceEEEEEcCC--CCcc-----eehhhcCCceeE----EEecCCCceEEEeccccceEEeeeccC
Confidence 84 66778999999999999999987 6664 557789999998 99998655 677888999999999995
Q ss_pred CceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEe
Q 000836 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGT 1246 (1262)
Q Consensus 1167 ~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSg 1246 (1262)
..+.-..+.... .|-.+++.+.....|+++..||.|+-+|+|....++... +.|.++|.+++++.. ....|+|+
T Consensus 319 ~~~s~~~wk~~g--~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---~AHd~~ISgl~~n~~-~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNSGKEWKFDG--EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---KAHDDEISGLSVNIQ-TPGLLSTA 392 (463)
T ss_pred ccccCceEEecc--ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE---EeccCCcceEEecCC-CCcceeec
Confidence 431222232222 388886666667789999999999999999987565544 456799999999988 56688888
Q ss_pred cCC-ceEEEecc
Q 000836 1247 PKC-LPSFSDLI 1257 (1262)
Q Consensus 1247 Sdd-~I~~WDLr 1257 (1262)
|.+ .+++|++-
T Consensus 393 s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 393 STDKVVKLWKFD 404 (463)
T ss_pred cccceEEEEeec
Confidence 866 99999974
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-13 Score=144.49 Aligned_cols=210 Identities=11% Similarity=0.169 Sum_probs=150.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeeCCCCCCCCeEEEEEeecCCC-cEEEEEeCCCeE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNI 1106 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-----~~l~~~~~h~~~~~~ItsL~fsn~~dg-~lLaTgS~DG~I 1106 (1262)
.|+..|++++|+.+|+.|++++.|++|+||+++.- ++++. +-+-+.-|.+.|. +|. .++++.-...++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~----nve~dhpT~V~Fa--pDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ----NVEYDHPTRVVFA--PDCKSVVVSVKRGNKL 157 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc----cccCCCceEEEEC--CCcceEEEEEccCCEE
Confidence 57888999999999999999999999999999752 11111 1111356789997 554 455666667789
Q ss_pred EEEEcCCC-CCcceEE-eeeee---ccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC
Q 000836 1107 RIWKDYDQ-KDKQKLV-TAFSS---IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1262)
Q Consensus 1107 rIWD~~~~-~g~~~lv-sa~~~---l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~ 1181 (1262)
++|..... +|..... ..|.. -+.|.-.+.+ +-....+.+|++++.|..|.+||++ ++ .+.++.+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~----iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~- 230 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIIN----IGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSS- 230 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEE----EeecCCceEEEEecCCCcEEEEecC-Cc-eeeeecccccc-
Confidence 99987531 2222111 01111 1123333334 2233456688999999999999999 77 89999887765
Q ss_pred eeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----CceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTP-----DMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1182 VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~-----~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
-+.. ..+|+|+++++++-.-.|+||..--. +...+.+ .+.||.+.|..++|+++ ...++|.|.| .+++||
T Consensus 231 n~~a-avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 231 NYDA-AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWD 306 (420)
T ss_pred ccce-eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCC--cceeEEEecCCcEEEee
Confidence 3433 78999999999998899999987422 2344555 67899999999999999 8899999955 999998
Q ss_pred c--ccc
Q 000836 1256 L--IYF 1259 (1262)
Q Consensus 1256 L--ryf 1259 (1262)
. ||-
T Consensus 307 tdVrY~ 312 (420)
T KOG2096|consen 307 TDVRYE 312 (420)
T ss_pred ccceEe
Confidence 4 554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=147.64 Aligned_cols=215 Identities=16% Similarity=0.248 Sum_probs=157.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEeecCCCc-EEEEEeCCCeEEEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t--g~~l~~~~~h~~~~~~ItsL~fsn~~dg~-lLaTgS~DG~IrIWD 1110 (1262)
..++|++|.|||..+.|++|+.|++++||.+.. ...+..+.-.. .+|.+.+|. ++|. .+++++.......||
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~--p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFA--PNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc---Cccceeeec--CCCceEEEecccceEEEEee
Confidence 447899999999999999999999999998863 34555555444 789999997 7777 899999999999999
Q ss_pred cCCCCCcceEEe-------------------eeeeccCCCCcc----------------cccceeEEEcCCCCEEEEEeC
Q 000836 1111 DYDQKDKQKLVT-------------------AFSSIQGHKPGV----------------RCSNVVVDWQQQSGYLYASGE 1155 (1262)
Q Consensus 1111 ~~~~~g~~~lvs-------------------a~~~l~~h~~~V----------------~sv~l~v~wsp~~~~Llsgg~ 1155 (1262)
+.+ .+...+. .+-.+.|+.+.| .+....+.|+.++..|+++|.
T Consensus 287 le~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 287 LET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccc--cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 975 2111111 111222332222 111123789999999999999
Q ss_pred CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----Ccee--------------
Q 000836 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP-----DMLV-------------- 1216 (1262)
Q Consensus 1156 Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~-----~~~v-------------- 1216 (1262)
+|.|.+||++... |++.+....+-.-+++ +.+.+|.+||+|+..|.|.|||..+. ..++
T Consensus 365 ~GeV~v~nl~~~~-~~~rf~D~G~v~gts~-~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 365 TGEVYVWNLRQNS-CLHRFVDDGSVHGTSL-CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred CceEEEEecCCcc-eEEEEeecCccceeee-eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999999999999 9999976555445677 77889999999999999999995421 0000
Q ss_pred ---------------------------eeecCC---CCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1217 ---------------------------CSTRPH---TQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1217 ---------------------------~~~~~~---~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
.++..+ ...-+.|+|++|+|+ +.+|+.|.++ .+.+|.|.+|
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~--sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN--SGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC--CceEEeecCCCceeeEeeccC
Confidence 011111 112346899999999 7799999966 9999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-10 Score=137.74 Aligned_cols=210 Identities=13% Similarity=0.173 Sum_probs=144.4
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1034 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1034 ~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg-------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
|...+..++.++ ++.++++|+.||+|+|||...- +...++.- .++++.++... ..++.++.|+.||.
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~--~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMC--GNGDQFAVSTKDGS 1121 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEec--cCCCeEEEEcCCCe
Confidence 345566777765 5589999999999999998642 22233332 24788888887 78899999999999
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCc-ccccceeEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeeEeec--CCCCC
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPG-VRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDC 1180 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~-V~sv~l~v~wsp~~--~~Llsgg~Dg~IrIWDlrs~~~~v~ti~--~hs~~ 1180 (1262)
|++.++.....+....+..+....+... +.+ | -++.... ..++.+..-+.|..||+++.. ...+++ ..++.
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~--m-~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS--M-HAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGL 1197 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEE--e-ecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccccc
Confidence 9999997632222222223333333322 222 1 2232222 245666777889999999877 444443 33444
Q ss_pred CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCC--CEEEEecC---CceEEEe
Q 000836 1181 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP--AKVNGTPK---CLPSFSD 1255 (1262)
Q Consensus 1181 ~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g--~~LaSgSd---d~I~~WD 1255 (1262)
|+++ +.++.++.++.|+..|.+-+||+|-+. ++..| .+ ++..+|..+..+|- .+ ...++++. +.+..|+
T Consensus 1198 -vTSi-~idp~~~WlviGts~G~l~lWDLRF~~-~i~sw-~~-P~~~~i~~v~~~~~-~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1198 -VTSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV-PILSW-EH-PARAPIRHVWLCPT-YPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred -eeEE-EecCCceEEEEecCCceEEEEEeecCc-eeecc-cC-cccCCcceEEeecc-CCCCceEEEecccCCCceeeee
Confidence 9999 889999999999999999999999776 66666 34 45589999999987 23 34555543 3888998
Q ss_pred ccc
Q 000836 1256 LIY 1258 (1262)
Q Consensus 1256 Lry 1258 (1262)
+..
T Consensus 1272 ~~~ 1274 (1431)
T KOG1240|consen 1272 MET 1274 (1431)
T ss_pred ccc
Confidence 754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-13 Score=150.79 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=146.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE---------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t---------g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
|=..|+|+.|+.||.++++|+.||.|.+|++.+ -+.++.|..|. -.|+++...+......++|+|.|.
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT---LSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc---ceeEEEEecCCCccceEEEecCCc
Confidence 336799999999999999999999999998743 36778888898 899999987555668999999999
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------e
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ---------------Q 1169 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~---------------~ 1169 (1262)
++|+||+.. +.. +. ++ .....+.+ +...|.+..+++|+.+|.|.+.++..-. .
T Consensus 199 t~k~wdlS~--g~L--Ll---ti-~fp~si~a----v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 199 TIKLWDLSL--GVL--LL---TI-TFPSSIKA----VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred eEEEEEecc--cee--eE---EE-ecCCccee----EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 999999976 432 21 11 12234555 7788999999999999999888764321 1
Q ss_pred eeEeecCCCC-CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1170 MVNPIPSSSD-CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1170 ~v~ti~~hs~-~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.+..+.+|.+ +.|+|+ +.+.+|.+|++|+.||.|+|||+.+.+ ++++.... .++|+.+.+.|-
T Consensus 267 ~~~~~~Gh~~~~~ITcL-ais~DgtlLlSGd~dg~VcvWdi~S~Q-~iRtl~~~---kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCL-AISTDGTLLLSGDEDGKVCVWDIYSKQ-CIRTLQTS---KGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEE-EEecCccEEEeeCCCCCEEEEecchHH-HHHHHhhh---ccccceeEeecc
Confidence 4566777877 359999 889999999999999999999998877 55555333 489999999765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=151.51 Aligned_cols=196 Identities=13% Similarity=0.199 Sum_probs=154.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
+.+..+.-+..+..++|+| ..|.|||.....+++.+.-+. ..|.++.|+ +....+|++|.+|+.|.+||.+...
T Consensus 148 s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~---Dti~svkfN-pvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWGA---DSISSVKFN-PVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred ccccccccccccccccccC--ceeeecccccCCccceeecCC---CceeEEecC-CCcchheeeeccCCceEEEecccCC
Confidence 3355566666677778776 468999999888898888777 789999995 7788899999999999999998732
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
.-.+++ . ....+. ++|+|..-.+.+++.|..+..+|+|.-..++....+|.+. |.++ .++|.|.-|
T Consensus 222 Pl~KVi---~-----~mRTN~----IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA-V~dV-dfsptG~Ef 287 (433)
T KOG0268|consen 222 PLKKVI---L-----TMRTNT----ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA-VMDV-DFSPTGQEF 287 (433)
T ss_pred ccceee---e-----eccccc----eecCccccceeeccccccceehhhhhhcccchhhccccee-EEEe-ccCCCcchh
Confidence 222222 1 112334 8999966667777889999999999877688889999887 9999 899999999
Q ss_pred EEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
++|+.|.+||||..+.+.. +.. .+...-..|.+|.|+-| .++++|||++ ++++|.-
T Consensus 288 vsgsyDksIRIf~~~~~~S--Rdi-YhtkRMq~V~~Vk~S~D--skyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHS--RDI-YHTKRMQHVFCVKYSMD--SKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccccceEEEeecCCCcc--hhh-hhHhhhheeeEEEEecc--ccEEEecCCCcceeeeec
Confidence 9999999999999987651 111 22222357999999999 9999999987 9999974
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=142.71 Aligned_cols=209 Identities=15% Similarity=0.203 Sum_probs=153.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCc
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~ 1117 (1262)
..|+.|++-|.+||+|+.+|.|.|||+.|...-+.+.+|. .+|++++|+ .||.+|+|+|.|..|.+||+..+.--
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~WS--~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCWS--RDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEec--CCCCEeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999988888899999 899999998 99999999999999999999752110
Q ss_pred ce--------------------EEeeee------ecc--CCC-------CcccccceeEEEcCCCCEEEEEeCCCeEEEE
Q 000836 1118 QK--------------------LVTAFS------SIQ--GHK-------PGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1118 ~~--------------------lvsa~~------~l~--~h~-------~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW 1162 (1262)
.+ +++.+. .+. .|. +..+.+.-...|.+.|.++++|...|.+.++
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 00 000000 000 000 0001111113377889999999999999999
Q ss_pred eCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-----ee---eeecCCCCCCCCeEEEEE
Q 000836 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----LV---CSTRPHTQQVERVVGISF 1234 (1262)
Q Consensus 1163 Dlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~-----~v---~~~~~~~gH~~~V~slaf 1234 (1262)
|..+.+ ++..++-.+...|..+ .++..|+.|+.-+.|..||.|+++.-.. .+ +.++.. -.+..-.+++|
T Consensus 181 ~a~t~e-~vas~rits~~~IK~I-~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccf 257 (405)
T KOG1273|consen 181 DAETLE-CVASFRITSVQAIKQI-IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCF 257 (405)
T ss_pred ecchhe-eeeeeeechheeeeEE-EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhhhhhheee
Confidence 999999 9999887663348888 7888999999999999999999873110 01 111111 01234567889
Q ss_pred ecCCCCCEEEEecCC--ceEEEec
Q 000836 1235 QPGLDPAKVNGTPKC--LPSFSDL 1256 (1262)
Q Consensus 1235 sp~~~g~~LaSgSdd--~I~~WDL 1256 (1262)
+.+ |.+++.|+.- .+++|.-
T Consensus 258 s~d--geYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 258 SGD--GEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cCC--ccEEEeccccceeEEEEec
Confidence 988 8888888743 8889974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=136.54 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=149.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCC---------C-cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEE---------D-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~t---------g-~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
|..-+++|.+++|++|..+|.|.|..+.+ | ..+..+++|. ++|..++|. ..+|++|+ ||.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f~----d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAFH----DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeeee----hhheeecc-CceEE
Confidence 33446789999999999999999998864 1 3456678888 899999994 35677766 59999
Q ss_pred EEEcCCCCCcceEEeeeeec------cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC
Q 000836 1108 IWKDYDQKDKQKLVTAFSSI------QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l------~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~ 1181 (1262)
-|..+...........|+.. .-..+.|+. +-..|..+.++.+|.|+.+.-||+++++ ..+++++|++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINa----m~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDY- 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINA----MWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDY- 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccce----eEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcce-
Confidence 99876521111111112111 112244565 6667888888888899999999999999 99999999998
Q ss_pred eeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCC------CC-CCCeEEEEEecCCCCCEEEEecCCceEEE
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT------QQ-VERVVGISFQPGLDPAKVNGTPKCLPSFS 1254 (1262)
Q Consensus 1182 VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~------gH-~~~V~slafsp~~~g~~LaSgSdd~I~~W 1254 (1262)
|.++ ........+++|+.||+|||||.++++ .+..+..++ .| ..||-+++-+.+ .|++|+.-.+.+|
T Consensus 159 vH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgGp~lslw 232 (325)
T KOG0649|consen 159 VHSV-VGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGGPKLSLW 232 (325)
T ss_pred eeee-eecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc----eEEecCCCceeEE
Confidence 9999 555566688899999999999999988 344432221 12 357888887666 9999988899999
Q ss_pred ecccc
Q 000836 1255 DLIYF 1259 (1262)
Q Consensus 1255 DLryf 1259 (1262)
.||-.
T Consensus 233 hLrss 237 (325)
T KOG0649|consen 233 HLRSS 237 (325)
T ss_pred eccCC
Confidence 99853
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=157.01 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=164.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe---eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF---DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~---~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
..+++++.++.|++.+.|...|.|-+|++.+|-...+| +.|. +.|++++.. .-+..+++++.+|.+++||..
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~---~~V~gla~D--~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK---GEVTGLAVD--GTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc---CceeEEEec--CCCceEEEccCcceEEEEecC
Confidence 56889999999999999999999999999999888888 4677 899999995 567889999999999999996
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. . .+...++. ...+.. +..+...+.++++.+|-.|+++|+.+.+ .++.+.+|.+. |+++ .|+++|
T Consensus 524 ~--k--~l~~~l~l----~~~~~~----iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~nr-itd~-~FS~Dg 588 (910)
T KOG1539|consen 524 K--K--VLKKSLRL----GSSITG----IVYHRVSDLLAIALDDFSIRVVDVVTRK-VVREFWGHGNR-ITDM-TFSPDG 588 (910)
T ss_pred C--c--ceeeeecc----CCCcce----eeeeehhhhhhhhcCceeEEEEEchhhh-hhHHhhccccc-eeee-EeCCCC
Confidence 5 1 13322221 223444 5666777888888999999999999999 99999999997 9999 999999
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC--ceEEEeccccc
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC--LPSFSDLIYFL 1260 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd--~I~~WDLryfl 1260 (1262)
+.+++++.|++||+||+-++. ++..+ .. ..+.+++.|+|+ |.+|+|...| -|++|--+-.+
T Consensus 589 rWlisasmD~tIr~wDlpt~~-lID~~-~v---d~~~~sls~SPn--gD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGT-LIDGL-LV---DSPCTSLSFSPN--GDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred cEEEEeecCCcEEEEeccCcc-eeeeE-ec---CCcceeeEECCC--CCEEEEEEecCceEEEEEchhHh
Confidence 999999999999999999988 44333 12 378999999999 9999999955 88999765443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=140.42 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=159.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeeCCCC--CCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-LNSFDNHDF--PDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~-l~~~~~h~~--~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
+-++|.|+.|.|++..+++-. +..|.+|++..+.. +..+..... .....++-+|++..+++.+++.+ |++++.||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 335799999999999999887 88999999998755 333322110 01467888998667888888765 88999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~-Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
.++.... +..-..|...|++ ++|+|...+ |+++|+||.||+||.|+.+.+++++++|+.. |.++.+.+
T Consensus 200 ~RT~~~~------~sI~dAHgq~vrd----lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW-vW~VRfn~ 268 (370)
T KOG1007|consen 200 LRTMKKN------NSIEDAHGQRVRD----LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW-VWAVRFNP 268 (370)
T ss_pred ccchhhh------cchhhhhcceeee----ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-EEEEEecC
Confidence 9872221 2344678888998 999998775 4555899999999999987799999999997 99997767
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC---------------------c--e--eeeecCCCCCCCCeEEEEEecCCCCCEEE
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPD---------------------M--L--VCSTRPHTQQVERVVGISFQPGLDPAKVN 1244 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~---------------------~--~--v~~~~~~~gH~~~V~slafsp~~~g~~La 1244 (1262)
.+..++++|+.|..|.+|....-. . + -..+.++..|...|.+++|+.- +.-.++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa-dPWiFA 347 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA-DPWIFA 347 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC-CCeeEE
Confidence 788899999999999999653210 0 0 0122345678999999999877 466778
Q ss_pred Eec-CCceEEEecccc
Q 000836 1245 GTP-KCLPSFSDLIYF 1259 (1262)
Q Consensus 1245 SgS-dd~I~~WDLryf 1259 (1262)
+-| |+.+.+-.+.-+
T Consensus 348 SLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 348 SLSYDGRVIISSVPRF 363 (370)
T ss_pred EeccCceEEeecCChh
Confidence 888 667766665444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-12 Score=148.49 Aligned_cols=217 Identities=16% Similarity=0.225 Sum_probs=164.3
Q ss_pred ccCCCccccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE
Q 000836 1022 KLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA 1100 (1262)
Q Consensus 1022 kl~~~~~~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~-~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg 1100 (1262)
++..+.+.+-.-....|.+|+|+...+.||++-.+|+|.||++..+= +...+.++. .+.|.+++|+ ++..|++.
T Consensus 12 ~m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~--drsIE~L~W~---e~~RLFS~ 86 (691)
T KOG2048|consen 12 KMQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE--DRSIESLAWA---EGGRLFSS 86 (691)
T ss_pred eeEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCC--CCceeeEEEc---cCCeEEee
Confidence 34444555555567889999999999999999999999999999763 334455544 5899999996 77889999
Q ss_pred eCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-CCCC
Q 000836 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSD 1179 (1262)
Q Consensus 1101 S~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~ 1179 (1262)
+.+|+|.-||+.+ .+.. ..+....+.|++ ++-+|.+..+++|++||.+...+...++ ...... ....
T Consensus 87 g~sg~i~EwDl~~--lk~~-----~~~d~~gg~IWs----iai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~ 154 (691)
T KOG2048|consen 87 GLSGSITEWDLHT--LKQK-----YNIDSNGGAIWS----IAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQK 154 (691)
T ss_pred cCCceEEEEeccc--Ccee-----EEecCCCcceeE----EEeCCccceEEeecCCceEEEEecCCce-EEEEeeccccc
Confidence 9999999999987 4442 345556678888 8889999999999999988888888877 444432 2222
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee-eeec--CC-CCCCCCeEEEEEecCCCCCEEEEec-CCceEEE
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV-CSTR--PH-TQQVERVVGISFQPGLDPAKVNGTP-KCLPSFS 1254 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v-~~~~--~~-~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~W 1254 (1262)
+.|.++ .|++++..+++|+.||.|++||...+.... ..++ .. ++...-|++|.|-.+ + .|++|. .|.+.||
T Consensus 155 sRvLsl-sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~-tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 155 SRVLSL-SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--S-TIASGDSAGTVTFW 230 (691)
T ss_pred ceEEEE-EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--C-cEEEecCCceEEEE
Confidence 349999 899999999999999999999999887432 1111 11 123345788888766 3 677776 6699999
Q ss_pred ecccc
Q 000836 1255 DLIYF 1259 (1262)
Q Consensus 1255 DLryf 1259 (1262)
|-.++
T Consensus 231 d~~~g 235 (691)
T KOG2048|consen 231 DSIFG 235 (691)
T ss_pred cccCc
Confidence 97654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=139.76 Aligned_cols=199 Identities=12% Similarity=0.177 Sum_probs=147.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.+.++|.+++|+.+|..+++|+.|+.+++||+.+++ +..+..|. ++|.++.|.+......|+|||.|.+||.||.+
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd---~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHD---APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecc---cceeEEEEecCCCcceeEecccccceeecccC
Confidence 466889999999999999999999999999999994 56788899 89999999854455689999999999999998
Q ss_pred CCCCc-----ce-----------EEee-------eeecc-------CCC----CcccccceeEEEcCCCCEEEEEeCCCe
Q 000836 1113 DQKDK-----QK-----------LVTA-------FSSIQ-------GHK----PGVRCSNVVVDWQQQSGYLYASGEVSS 1158 (1262)
Q Consensus 1113 ~~~g~-----~~-----------lvsa-------~~~l~-------~h~----~~V~sv~l~v~wsp~~~~Llsgg~Dg~ 1158 (1262)
....- ++ ++-+ ...+. .+. -.+++ ++..++....+.|+-.|.
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~----va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRC----VACFQDKDGFALGSIEGR 221 (347)
T ss_pred CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeE----EEEEecCCceEeeeecce
Confidence 62110 00 0000 00110 111 12344 566666777788999999
Q ss_pred EEEEeCCCC--ceeeEeecCCCC--------CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCC
Q 000836 1159 IMLWDLEKE--QQMVNPIPSSSD--------CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1228 (1262)
Q Consensus 1159 IrIWDlrs~--~~~v~ti~~hs~--------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~ 1228 (1262)
+-|-.+... + .-.+|+.|.. ..|++| +|+|.-..|+|.+.||+...||......+. +...|..+
T Consensus 222 v~iq~id~~~~~-~nFtFkCHR~~~~~~~~VYaVNsi-~FhP~hgtlvTaGsDGtf~FWDkdar~kLk----~s~~~~qp 295 (347)
T KOG0647|consen 222 VAIQYIDDPNPK-DNFTFKCHRSTNSVNDDVYAVNSI-AFHPVHGTLVTAGSDGTFSFWDKDARTKLK----TSETHPQP 295 (347)
T ss_pred EEEEecCCCCcc-CceeEEEeccCCCCCCceEEecce-EeecccceEEEecCCceEEEecchhhhhhh----ccCcCCCc
Confidence 999888775 3 4556666653 137778 778877899999999999999987665332 55567899
Q ss_pred eEEEEEecCCCCCEEEEec
Q 000836 1229 VVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1229 V~slafsp~~~g~~LaSgS 1247 (1262)
|++..|+.+ |.+++-+.
T Consensus 296 Itcc~fn~~--G~ifaYA~ 312 (347)
T KOG0647|consen 296 ITCCSFNRN--GSIFAYAL 312 (347)
T ss_pred cceeEecCC--CCEEEEEe
Confidence 999999999 88876553
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=142.07 Aligned_cols=211 Identities=17% Similarity=0.235 Sum_probs=153.7
Q ss_pred CCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEECCCC--cE--EEEeeCCC--CCCCCeEEEEEeecCCCcEEEEEe
Q 000836 1033 RFEKGTKTALLQPFSP-----IVVAADENERIKIWNYEED--TL--LNSFDNHD--FPDKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~-----~Lasgs~dg~I~VWD~~tg--~~--l~~~~~h~--~~~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
.|..+++.+.|.|+.. +||+++ ..+|+|.+... +. ...+.++. ....++|+..| |+.+.+++.++|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW-ne~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW-NEVDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc-ccCCcceeEeec
Confidence 4567899999999763 566554 78999998742 11 11121111 22478999999 589999999999
Q ss_pred CCCeEEEEEcCCC-CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeEeecCCC-
Q 000836 1102 CNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSS- 1178 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~-~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Lls-gg~Dg~IrIWDlrs~~~~v~ti~~hs- 1178 (1262)
-|-+..|||+..+ .+..+ ..+-.|...|.. ++|...+..+++ .|.||.||++|+|...+..-.+...+
T Consensus 171 iDTTCTiWdie~~~~~~vk-----TQLIAHDKEV~D----Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVK-----TQLIAHDKEVYD----IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred ccCeEEEEEEeecccccee-----eEEEecCcceeE----EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 9999999999873 11111 345679999999 899886655554 49999999999998772222233332
Q ss_pred CCCeeEEEEEcCCCCEEEEEECC-CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1179 DCSISALTASQVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1179 ~~~VtsLa~~s~~g~lLatGs~D-GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
..+...+++...+.+++++-..| ..|.|-|+|.+...+. .+++|.+.|++++|.|+ .+.+|.|++|| ...+||+
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva---~L~~H~a~VNgIaWaPh-S~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA---RLRNHQASVNGIAWAPH-SSSHICTAGDDCQALIWDL 317 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee---hhhcCcccccceEecCC-CCceeeecCCcceEEEEec
Confidence 23477885555667778776555 5799999998876554 45577899999999999 68899999988 8899998
Q ss_pred ccc
Q 000836 1257 IYF 1259 (1262)
Q Consensus 1257 ryf 1259 (1262)
.-+
T Consensus 318 ~q~ 320 (364)
T KOG0290|consen 318 QQM 320 (364)
T ss_pred ccc
Confidence 644
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-12 Score=155.70 Aligned_cols=186 Identities=17% Similarity=0.301 Sum_probs=147.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
++..++.+++|+-+|+++|.|++|-.|++-+..++.....+.+|. +.|.++.|. +.+++|++.+.||.|+|||+.
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~---apVl~l~~~--p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD---APVLQLSYD--PKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC---CceeeeeEc--CCCCEEEEEecCceEEEEEcc
Confidence 455789999999999999999999999999999998889999999 999999996 899999999999999999997
Q ss_pred CCCCcceEEeeeeeccCCCCcc-cccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC-eeEEEEEcC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGV-RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS-ISALTASQV 1190 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V-~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~-VtsLa~~s~ 1190 (1262)
+ +.. ...+..+..-...+ ..+...++|+|+++.+++.+.|+.|++++..... ....+....... +.++ .|+|
T Consensus 169 ~--~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-~~f~Lr~~~~ss~~~~~-~wsP 242 (933)
T KOG1274|consen 169 D--GIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-LQFKLRDKLSSSKFSDL-QWSP 242 (933)
T ss_pred c--chh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-eheeecccccccceEEE-EEcC
Confidence 6 322 11111111111111 1111238999999999999999999999999888 777776544332 6666 8999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
+|.+||+++.||.|.|||..+.+. + .....|++++|.|+
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~--~------~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHER--H------EFKRAVCCEAWKPN 281 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchh--c------cccceeEEEecCCC
Confidence 999999999999999999987331 1 12367999999999
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-13 Score=168.42 Aligned_cols=209 Identities=16% Similarity=0.251 Sum_probs=156.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
..|.+.|..++|+++.. .||+|+++|.|.|||+.+-+.-.++... ...+.|.+++|. ......|++|+.+|.+-|||
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~-~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ-APPSEIKCLSWN-RKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC-CCcccceEeccc-hhhhHHhhccCCCCCceecc
Confidence 35678899999999766 9999999999999999874433333222 123789999994 77888999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeC-C--CeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~-D--g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
++. .+ .++ .+..+.....+ -++.|+|++- .++++++ | -+|.+||+|....+++.+.+|..+ |.+|.
T Consensus 191 lr~--~~-pii----~ls~~~~~~~~--S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G-ilsls 260 (1049)
T KOG0307|consen 191 LRK--KK-PII----KLSDTPGRMHC--SVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG-ILSLS 260 (1049)
T ss_pred ccC--CC-ccc----ccccCCCccce--eeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc-eeeec
Confidence 986 22 222 23344332211 1289999766 4555544 3 469999999876688889999987 99996
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
|...+.+++++++.|+.|.+|+..+++ .+..+.. ..+|+..+.|.|. +...++.++ ++.|.++.+.
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~---~~nW~fdv~w~pr-~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPA---QGNWCFDVQWCPR-NPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCce-EeeecCC---CCcceeeeeecCC-Ccchhhhheeccceeeeeee
Confidence 666677999999999999999999988 4444422 3689999999998 555677777 6788777654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=141.15 Aligned_cols=209 Identities=20% Similarity=0.247 Sum_probs=154.9
Q ss_pred CCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1035 EKGTKTALLQP----FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1035 ~~~V~sl~fsp----dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
...-..++|.- ..+++|+|+.-|.|+|.|+.++++...+.+|. ..|+.+++. +...+++++||.|.+||+|+
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~-p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFH-PDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC---ccchhhhcC-CCCCcEEEEecCCceEEEEe
Confidence 34455566643 35689999999999999999999999999998 899999996 66778999999999999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eee--------------
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----QMV-------------- 1171 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-----~~v-------------- 1171 (1262)
+++ +.+-.+ +..+.+|...|.+ ++|+.++..++++|.|.++++|++...+ ++.
T Consensus 165 I~~--~~Cv~V--fGG~egHrdeVLS----vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 165 IQT--DVCVAV--FGGVEGHRDEVLS----VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred ccC--CeEEEE--ecccccccCcEEE----EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 987 444333 6788999999998 9999999999999999999999998321 000
Q ss_pred --Eeec------CCCC----------------------------------------CC-------------eeEE-EEEc
Q 000836 1172 --NPIP------SSSD----------------------------------------CS-------------ISAL-TASQ 1189 (1262)
Q Consensus 1172 --~ti~------~hs~----------------------------------------~~-------------VtsL-a~~s 1189 (1262)
..++ .|.. ++ |.-| -.+.
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 0000 0100 00 1111 0234
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+.++.||.|...|+|.+||++..+.....--.+......|...+|+.+ +..|+...++ .|.-||.+
T Consensus 317 ~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d--gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD--GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc--CcEEEEEeCCCcEEEEEee
Confidence 557789999999999999999876432221134444678999999999 7777666655 88888864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=143.48 Aligned_cols=203 Identities=12% Similarity=0.221 Sum_probs=158.3
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1032 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg-------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
..|..+|..++|+|++ ..+|+|++|.+|.||.+..+ +.+..+.+|. .+|--+.|. +...+.|++++.|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---rrVg~V~wH-PtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---RRVGLVQWH-PTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---eeEEEEeec-ccchhhHhhccCC
Confidence 4678899999999955 47888999999999998764 4567788999 899999995 7788999999999
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
.+|.+|++.+ ++. ++ ++. |...|.+ +.|+.+|+.+++++.|+.|||||.|+++ .+..-.+|.+..-.
T Consensus 154 n~v~iWnv~t--gea-li----~l~-hpd~i~S----~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 154 NTVSIWNVGT--GEA-LI----TLD-HPDMVYS----MSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPA 220 (472)
T ss_pred ceEEEEeccC--Cce-ee----ecC-CCCeEEE----EEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCcc
Confidence 9999999977 432 33 344 8899998 9999999999999999999999999999 88888888876333
Q ss_pred EEEEEcCCCCEEEEEEC---CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceEEEec
Q 000836 1184 ALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDL 1256 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~~WDL 1256 (1262)
.+ .|-.+|.++.||+. +..+-+||...-+...... .+. .++.|.---|.++ ..++.-++ |+.|+++.+
T Consensus 221 Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elD-tSnGvl~PFyD~d--t~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELD-TSNGVLLPFYDPD--TSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred ee-EEeccCceeeeccccccccceeccCcccccCcceeE-Eec-cCCceEEeeecCC--CCEEEEEecCCcceEEEEe
Confidence 33 46678888888875 6788999987765443221 332 2355666667888 55555444 449988865
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=141.53 Aligned_cols=194 Identities=17% Similarity=0.248 Sum_probs=140.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeee
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~ 1126 (1262)
+..+|++-.+|.|++||..+++.+..|+++. ..+..+.|++...+..+.+|+.||+||+||++.. ++.. + ..
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-~e~a-~---~~ 111 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-AESA-R---IS 111 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecc-hhhh-h---ee
Confidence 3578888899999999999999999999998 7888999985446788999999999999999972 2221 1 23
Q ss_pred ccCCCCcccccceeEEEcCCCCEEEEE----eCCCeEEEEeCCCCceeeEee-cCCCCCCeeEEEEEcCCCCEEEEEECC
Q 000836 1127 IQGHKPGVRCSNVVVDWQQQSGYLYAS----GEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALTASQVHGGQLAAGFVD 1201 (1262)
Q Consensus 1127 l~~h~~~V~sv~l~v~wsp~~~~Llsg----g~Dg~IrIWDlrs~~~~v~ti-~~hs~~~VtsLa~~s~~g~lLatGs~D 1201 (1262)
...+.+.... +++-+-.++.+.+| ..+-.|.+||+|..++.+..+ ..|.+. ||++.+.+.+.++|++|+.|
T Consensus 112 ~~~~~~~~f~---~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD-VT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFI---CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD-VTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcce---EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc-ceeEEecCCCCCeEEeeccc
Confidence 3344322211 13333345556555 246789999999998436655 567776 99995555577899999999
Q ss_pred CcEEEEECCCCCc---eeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1202 GSVRLYDVRTPDM---LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1202 GsVrIWDlrs~~~---~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
|-|.|||+..... +..++ .|.+.|..+.|... +...+.+-+ .....+|++.
T Consensus 188 GLvnlfD~~~d~EeDaL~~vi----N~~sSI~~igw~~~-~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVI----NHGSSIHLIGWLSK-KYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred ceEEeeecCCCcchhhHHHhh----cccceeeeeeeecC-CcceEEEEEccCceeEEEcc
Confidence 9999999986542 23222 45678999999988 333454444 5578888874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=137.98 Aligned_cols=205 Identities=18% Similarity=0.207 Sum_probs=142.4
Q ss_pred CCCeEEEEEcCCCC-EEEEEeC----C---CcEEEEECCCC---------cEEEEee-CCCCCCCCeEEEEEeecCCCcE
Q 000836 1035 EKGTKTALLQPFSP-IVVAADE----N---ERIKIWNYEED---------TLLNSFD-NHDFPDKGISKLCLVNELDVSL 1096 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~-~Lasgs~----d---g~I~VWD~~tg---------~~l~~~~-~h~~~~~~ItsL~fsn~~dg~l 1096 (1262)
.+.|+.++-+|..+ .|+++.. . ..+.||.+... +++..+. .+- +.|.|+.|. |++..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav---g~i~cvew~--Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV---GKINCVEWE--PNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh---CceeeEEEc--CCCCe
Confidence 45677888888655 4444332 1 24789988653 2334444 233 689999995 78888
Q ss_pred EEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeec
Q 000836 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1097 LaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~ 1175 (1262)
+++-. |..|.+|++..+......+. ...-.++....++ -.|+| ..+..+.+..|++++.||+|+.+ +...|.
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~-ss~s~e~~~~fts----g~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI~ 210 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVL-SSESAEMRHSFTS----GAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSIE 210 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeec-ccccccccceecc----cccCCCCccceEEEeCCCcEEEEEccchh-hhcchh
Confidence 87765 88999999987332111110 0111234444555 67988 45566666778999999999998 887776
Q ss_pred CCCCCCeeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEE
Q 000836 1176 SSSDCSISALTASQVH-GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSF 1253 (1262)
Q Consensus 1176 ~hs~~~VtsLa~~s~~-g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~ 1253 (1262)
...+..|..+ -+.|+ ..+|++|+.||.|||||.|..+.++. ...+|..||++|.|+|. ..+.++|||.| .+.+
T Consensus 211 dAHgq~vrdl-DfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 211 DAHGQRVRDL-DFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhcceeeec-cCCCCceEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCc-cceEEEecCCCceeEE
Confidence 5444458999 55554 45899999999999999998886553 55688999999999998 56778888866 7777
Q ss_pred Eec
Q 000836 1254 SDL 1256 (1262)
Q Consensus 1254 WDL 1256 (1262)
|-.
T Consensus 286 sca 288 (370)
T KOG1007|consen 286 SCA 288 (370)
T ss_pred Eec
Confidence 643
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-12 Score=142.10 Aligned_cols=188 Identities=18% Similarity=0.263 Sum_probs=154.3
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
+-..|...|++|.++..+.+||+++..|.|.|..+.++.....|...+ +..|.-+.|+ .....+|.+++++|.|.+|
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s--gqsvRll~ys-~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS--GQSVRLLRYS-PSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC--CCeEEEeecc-cccceeeEeeccCCeEEEE
Confidence 334567889999999999999999999999999999998888887665 3556688997 4555678899999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
|+.. ..+ . +.....|..+..+ ++|+|.+..|+++ |.|+.|.+||++... ....+..... .+++ .|
T Consensus 193 Dv~g--~sp-~---~~~~~~HsAP~~g----icfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~~P--lstv-af 258 (673)
T KOG4378|consen 193 DVQG--MSP-I---FHASEAHSAPCRG----ICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYSHP--LSTV-AF 258 (673)
T ss_pred eccC--CCc-c---cchhhhccCCcCc----ceecCCccceEEEecccceEEEeeccccc-ccceeeecCC--ccee-ee
Confidence 9975 112 1 2456778888888 8999988877666 999999999999887 6666655333 7888 88
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.++|.+|++|...|.|..||+|..+.++.++. .|...|++|+|++.
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s---ah~~sVt~vafq~s 304 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVRS---AHDASVTRVAFQPS 304 (673)
T ss_pred cCCceEEEeecCCceEEEEecccCCCCceEee---ecccceeEEEeeec
Confidence 99999999999999999999999887776654 45688999999998
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=147.35 Aligned_cols=198 Identities=12% Similarity=0.157 Sum_probs=151.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 000836 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g 1116 (1262)
.-.|++...+..++++|+..+.|+|||+....+.+.++.|. ..|+++.+. ....+|++++..|-|.|..+.+...
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~---stvt~v~YN--~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ---STVTYVDYN--NTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc---ceeEEEEec--CCcceeEEeccCCcEEEEecccCcc
Confidence 34455555556899999999999999999766777788898 899999996 5668999999999999999876211
Q ss_pred cceEEeeeeeccCC-CCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC-CCC
Q 000836 1117 KQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGG 1193 (1262)
Q Consensus 1117 ~~~lvsa~~~l~~h-~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~-~g~ 1193 (1262)
. ..+... ...|+- +.|++....+++. |++|.|.+||+.... ++..+...+..+...| +++| +..
T Consensus 156 t-------t~f~~~sgqsvRl----l~ys~skr~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gi-cfspsne~ 222 (673)
T KOG4378|consen 156 T-------TTFTIDSGQSVRL----LRYSPSKRFLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGI-CFSPSNEA 222 (673)
T ss_pred c-------cceecCCCCeEEE----eecccccceeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcc-eecCCccc
Confidence 1 122222 333443 8999988766655 999999999999888 7776654334447888 5555 566
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecccc
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIYF 1259 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLryf 1259 (1262)
+|++.+.|..|.+||.+... ....+ .+ ..+...|+|.++ |.+|+.|+ .+.+.+||+|-.
T Consensus 223 l~vsVG~Dkki~~yD~~s~~-s~~~l-~y---~~Plstvaf~~~--G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 223 LLVSVGYDKKINIYDIRSQA-STDRL-TY---SHPLSTVAFSEC--GTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eEEEecccceEEEeeccccc-cccee-ee---cCCcceeeecCC--ceEEEeecCCceEEEEecccC
Confidence 89999999999999999765 33333 33 378999999999 99999988 559999999864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=149.28 Aligned_cols=204 Identities=16% Similarity=0.286 Sum_probs=158.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t--------g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
|...|+.+.|++....|++++.||+|.+|++.. -+.+.+|.+|. ++|.|+++. .++..+.+|+.||+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v~--~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVVP--SNGEHCYSGGIDGT 367 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEec--CCceEEEeeccCce
Confidence 446789999999999999999999999999932 25788999999 999999996 89999999999999
Q ss_pred EEEEEcCCCC-----CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-e--------
Q 000836 1106 IRIWKDYDQK-----DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM-V-------- 1171 (1262)
Q Consensus 1106 IrIWD~~~~~-----g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~-v-------- 1171 (1262)
|+.|++.... -++... ...+.||...|+. +.+++....|++++.||++|.|+...+. + +
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl--~~~l~Ghtdavw~----l~~s~~~~~Llscs~DgTvr~w~~~~~~-~~~f~~~~e~g 440 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVL--SGTLLGHTDAVWL----LALSSTKDRLLSCSSDGTVRLWEPTEES-PCTFGEPKEHG 440 (577)
T ss_pred eeeeccCCCCCcccccCcchh--ccceeccccceee----eeecccccceeeecCCceEEeeccCCcC-ccccCCccccC
Confidence 9999654210 011111 2467889999998 8999999999999999999999876654 2 0
Q ss_pred -----------------------------------EeecCCCC------CCeeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000836 1172 -----------------------------------NPIPSSSD------CSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1172 -----------------------------------~ti~~hs~------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
..+..... ..+.-+ ..++.+.+.+++..|+.|+++|..
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v-Vs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV-VSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE-EecCCCCeeEecccCCceeccccc
Confidence 00000000 013444 567778899999999999999999
Q ss_pred CCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1211 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1211 s~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
+++.+. ....|...++++++.|+ |.+|++++.| .+.+|.+
T Consensus 520 ~~~~l~----s~~a~~~svtslai~~n--g~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILH----SMVAHKDSVTSLAIDPN--GPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccch----heeeccceecceeecCC--CceEEeecCCceeehhhc
Confidence 888332 33356789999999999 8999999954 9999986
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=147.65 Aligned_cols=200 Identities=14% Similarity=0.208 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
+..|.+++. ++.++++|+.+++|.+|...+++.-..+.... -++.+++|+ .+|++++.||+|-.|++-+..+
T Consensus 56 g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft---lp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D- 127 (933)
T KOG1274|consen 56 GELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT---LPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDD- 127 (933)
T ss_pred CceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeee---ccceEEEEe--cCCcEEEeecCceeEEEEeccc-
Confidence 344555544 56699999999999999998775332232223 578899997 8999999999999999999977
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC------CCCCeeEEEEE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTAS 1188 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h------s~~~VtsLa~~ 1188 (1262)
...+ +.+.+|...|.+ +.++|.+..|++++.||.|++||+..+. +..++.+- ....+.+..+|
T Consensus 128 -~s~~-----~~lrgh~apVl~----l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 128 -SSQE-----KVLRGHDAPVLQ----LSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred -cchh-----eeecccCCceee----eeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeee
Confidence 3332 568899999999 9999999999999999999999999988 76666431 10123333489
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
+|+|..|+.-+.|+.|++|+....+. ...++. ..|...+..+.|+|. |++||+++ ++.|.+||.-
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~we~-~f~Lr~-~~~ss~~~~~~wsPn--G~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKGWEL-QFKLRD-KLSSSKFSDLQWSPN--GKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCCcee-heeecc-cccccceEEEEEcCC--CcEEeeeccCCcEEEEecc
Confidence 99988888889999999999987773 333322 233455999999999 99999999 5599999975
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=133.30 Aligned_cols=208 Identities=13% Similarity=0.216 Sum_probs=150.7
Q ss_pred cCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecC-CCcEEEEEeCCCeEEEE
Q 000836 1032 TRFEKGTKTALLQPF-SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspd-g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~-dg~lLaTgS~DG~IrIW 1109 (1262)
+.|...|.++.|-|. ...+.+++-|.+++|||..+.+....|+-. +.|.+-++++-. ...++++|..|-.|++.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me----~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME----GKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC----ceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 346677999999994 457777889999999999999888777643 478777776222 24678899999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeeEeec-------------
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIP------------- 1175 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Lls-gg~Dg~IrIWDlrs~~~~v~ti~------------- 1175 (1262)
|+.. |... .++.+|.+.|.. +.|+|...++++ ||.||.||+||+|+...|...+.
T Consensus 174 Di~S--Gs~s-----H~LsGHr~~vla----V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 174 DIAS--GSFS-----HTLSGHRDGVLA----VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred eccC--Ccce-----eeeccccCceEE----EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence 9987 5553 678999999998 999998886554 57899999999998732544443
Q ss_pred -CCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCC------CeE-----EEEEecCCCCCEE
Q 000836 1176 -SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE------RVV-----GISFQPGLDPAKV 1243 (1262)
Q Consensus 1176 -~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~------~V~-----slafsp~~~g~~L 1243 (1262)
.|.+. |.++ ++..+|.++++++.|..+++|+...++...+.+.. .-|+. -|. -+.+-|..++..|
T Consensus 243 ~ah~gk-vngl-a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lal 319 (397)
T KOG4283|consen 243 TAHYGK-VNGL-AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVHIQSMDSDVFVLFPNDGSLAL 319 (397)
T ss_pred ccccce-eeee-eecccchhhhhccCccceEEeecccCccccccccc-ccccccccceEEEeecccceEEEEecCCeEEE
Confidence 34444 8888 88899999999999999999999877632221100 00100 011 1233454345666
Q ss_pred EEecCC-ceEEEecc
Q 000836 1244 NGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1244 aSgSdd-~I~~WDLr 1257 (1262)
++..++ .|+.|+..
T Consensus 320 l~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 320 LNLLEGSFVRRLSTH 334 (397)
T ss_pred EEccCceEEEeeecc
Confidence 776666 88888865
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=162.89 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=152.8
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEECCC---C---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1036 KGTKTALLQPFSPI----VVAADENERIKIWNYEE---D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~----Lasgs~dg~I~VWD~~t---g---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
.+-..++|.+.+.. +|.|.+||+|.+||... + ..+.++..|+ +.|..+.|+ ...+++|++|++||.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~---G~V~gLDfN-~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT---GPVLGLDFN-PFQGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC---Cceeeeecc-ccCCceeeccCCCCc
Confidence 45678889887765 88899999999999875 2 4566778888 899999995 677789999999999
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCC-Cee
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDC-SIS 1183 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~-~Vt 1183 (1262)
|.|||+... ..+ +. -.-......|.+ +.|+..-.+++++ +.+|.+.|||+|..+ .+-.+..+... .+.
T Consensus 141 I~iWDlnn~-~tP-~~---~~~~~~~~eI~~----lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 141 ILIWDLNKP-ETP-FT---PGSQAPPSEIKC----LSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCS 210 (1049)
T ss_pred EEEeccCCc-CCC-CC---CCCCCCcccceE----eccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCcccee
Confidence 999999761 111 11 001123455666 9999877766655 678899999999998 88888766653 266
Q ss_pred EEEEEcCC-CCEEEEEECC---CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1184 ALTASQVH-GGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1184 sLa~~s~~-g~lLatGs~D---GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
.+ .|+|+ ...++++++| -.|.+||+|.....++ .+++|...|.++.|++. +..+|+|++.| .+..|+...
T Consensus 211 ~l-~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k---~~~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 211 VL-AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK---ILEGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ee-eeCCCCceeeeeecCCCCCceeEeecccccCCchh---hhcccccceeeeccCCC-CchhhhcccCCCCeeEecCCC
Confidence 77 56655 4567777665 3689999998775553 45678899999999998 55788888855 999998643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=147.51 Aligned_cols=211 Identities=13% Similarity=0.214 Sum_probs=162.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~d-----g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
.|+..|.+++.+|+++++|+++.. ..|++|+..+...+..+..|. -.||.|+|+ +|+.+|++.|.|.++.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs---LTVT~l~FS--pdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS---LTVTRLAFS--PDGRYLLSVSRDRTVS 597 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc---eEEEEEEEC--CCCcEEEEeecCceEE
Confidence 577889999999999999998753 469999999888888899999 899999998 9999999999999999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeEee--cCCCCCCee
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE--QQMVNPI--PSSSDCSIS 1183 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~--~~~v~ti--~~hs~~~Vt 1183 (1262)
+|.... +...+. .+...+.|+..|++ .+|+|++.+++++|.|++|++|..... + ++..+ ..+.. +|+
T Consensus 598 l~~~~~-~~~~e~--~fa~~k~HtRIIWd----csW~pde~~FaTaSRDK~VkVW~~~~~~d~-~i~~~a~~~~~~-aVT 668 (764)
T KOG1063|consen 598 LYEVQE-DIKDEF--RFACLKAHTRIIWD----CSWSPDEKYFATASRDKKVKVWEEPDLRDK-YISRFACLKFSL-AVT 668 (764)
T ss_pred eeeeec-ccchhh--hhccccccceEEEE----cccCcccceeEEecCCceEEEEeccCchhh-hhhhhchhccCC-cee
Confidence 999854 122211 14457889999999 999999999999999999999998777 4 44443 22334 499
Q ss_pred EEEEEcCCC----CEEEEEECCCcEEEEECCCCC--------ceeeeecCCCCCCCCeEEEEEecC--------CCCCEE
Q 000836 1184 ALTASQVHG----GQLAAGFVDGSVRLYDVRTPD--------MLVCSTRPHTQQVERVVGISFQPG--------LDPAKV 1243 (1262)
Q Consensus 1184 sLa~~s~~g----~lLatGs~DGsVrIWDlrs~~--------~~v~~~~~~~gH~~~V~slafsp~--------~~g~~L 1243 (1262)
+++..+... .++++|...|.|.+|...... ..........+|...|+.+.|.|. .+...|
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence 995544433 389999999999999854111 011112234567889999999975 134467
Q ss_pred EEecCC-ceEEEecc
Q 000836 1244 NGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1244 aSgSdd-~I~~WDLr 1257 (1262)
++|++| .+++..+.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 888877 88877654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=145.90 Aligned_cols=191 Identities=14% Similarity=0.221 Sum_probs=158.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCc
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~ 1117 (1262)
..+++.+||.+..+++..||+|.|||+.+...++.|++|. ..+.||..+ .||..|-||+-|.+||-||++. ++
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht---DGascIdis--~dGtklWTGGlDntvRcWDlre--gr 584 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---DGASCIDIS--KDGTKLWTGGLDNTVRCWDLRE--GR 584 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC---CCceeEEec--CCCceeecCCCccceeehhhhh--hh
Confidence 4568889999999999999999999999999999999999 889999997 8999999999999999999987 32
Q ss_pred ceEEeeeeeccCC--CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1118 QKLVTAFSSIQGH--KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1118 ~~lvsa~~~l~~h--~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
. +..| .+.|.+ +.+.|.+..+++|-.++.+.|-.....+ ...+..|.+ +|.++ .|.+.|+.|
T Consensus 585 q--------lqqhdF~SQIfS----Lg~cP~~dWlavGMens~vevlh~skp~--kyqlhlheS-cVLSl-KFa~cGkwf 648 (705)
T KOG0639|consen 585 Q--------LQQHDFSSQIFS----LGYCPTGDWLAVGMENSNVEVLHTSKPE--KYQLHLHES-CVLSL-KFAYCGKWF 648 (705)
T ss_pred h--------hhhhhhhhhhee----cccCCCccceeeecccCcEEEEecCCcc--ceeeccccc-EEEEE-EecccCcee
Confidence 2 2333 456777 6777999999999888888887766554 445555655 59999 899999999
Q ss_pred EEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
++.+.|..+..|.+--+..+... - -.+.|.+...+.+ .++++|||.+ ...+|.+.|
T Consensus 649 vStGkDnlLnawrtPyGasiFqs---k--E~SsVlsCDIS~d--dkyIVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQS---K--ESSSVLSCDISFD--DKYIVTGSGDKKATVYEVIY 705 (705)
T ss_pred eecCchhhhhhccCccccceeec---c--ccCcceeeeeccC--ceEEEecCCCcceEEEEEeC
Confidence 99999999999998777643322 1 1478999999999 8999999977 778887765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=142.28 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=148.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.+.|..++|. ++..|++.+.+|.|.-||+.+++.+..+.... +.|++++.+ +.+..++.|++||.+..++...
T Consensus 69 drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~g---g~IWsiai~--p~~~~l~IgcddGvl~~~s~~p- 141 (691)
T KOG2048|consen 69 DRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNG---GAIWSIAIN--PENTILAIGCDDGVLYDFSIGP- 141 (691)
T ss_pred CCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCC---cceeEEEeC--CccceEEeecCCceEEEEecCC-
Confidence 3669999999 45568888889999999999999888777655 899999996 7789999999999777777644
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-----CC--CCCCeeEEEE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-----SS--SDCSISALTA 1187 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-----~h--s~~~VtsLa~ 1187 (1262)
++. +--+.+.-..+.+.+ ++|++++..++.|+.||.|++||+.++. .+..+. .. ....|.++..
T Consensus 142 -~~I---~~~r~l~rq~sRvLs----lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 142 -DKI---TYKRSLMRQKSRVLS----LSWNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLF 212 (691)
T ss_pred -ceE---EEEeecccccceEEE----EEecCCccEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEE
Confidence 332 222445555567777 9999999999999999999999999988 655222 11 2224677743
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
. ....+++|...|+|.+||...+. ++ +.+.-|.+.|.+++..++ +..+++++-|
T Consensus 213 L--rd~tI~sgDS~G~V~FWd~~~gT-Li---qS~~~h~adVl~Lav~~~--~d~vfsaGvd 266 (691)
T KOG2048|consen 213 L--RDSTIASGDSAGTVTFWDSIFGT-LI---QSHSCHDADVLALAVADN--EDRVFSAGVD 266 (691)
T ss_pred e--ecCcEEEecCCceEEEEcccCcc-hh---hhhhhhhcceeEEEEcCC--CCeEEEccCC
Confidence 3 45689999999999999998877 33 355567799999999998 7788888744
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=134.36 Aligned_cols=179 Identities=12% Similarity=0.203 Sum_probs=136.1
Q ss_pred EEEEeCCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCc
Q 000836 1050 VVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1117 (1262)
Q Consensus 1050 Lasgs~dg~I~VWD~~tg------------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~ 1117 (1262)
+++|++...|.-+++.-. ..+..|..|. +.|++++. ++.++++||.|-+|+|||++. ..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~---~sitavAV----s~~~~aSGssDetI~IYDm~k--~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA---GSITALAV----SGPYVASGSSDETIHIYDMRK--RK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccc---cceeEEEe----cceeEeccCCCCcEEEEeccc--hh
Confidence 567777777666665321 2355677888 89999998 589999999999999999976 21
Q ss_pred ceEEeeeeeccCCCCcccccceeEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1118 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1118 ~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~--~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
. ...+-.|.+.|++ +.|.+.-. +|++|++||.|.+||..... ++.++.+|... |+.+ +.+|.|++-
T Consensus 75 q-----lg~ll~Hagsita----L~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~-Vt~l-siHPS~KLA 142 (362)
T KOG0294|consen 75 Q-----LGILLSHAGSITA----LKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQ-VTDL-SIHPSGKLA 142 (362)
T ss_pred h-----hcceeccccceEE----EEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccccc-ccee-EecCCCceE
Confidence 1 2456778899998 78877654 99999999999999999998 99999999998 9999 889999999
Q ss_pred EEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
++.+.|+.+|.||+-.++.-. .. ... ..-+.|.|+|. |.+++.++.+.|-+|.+
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~-v~-~L~---~~at~v~w~~~--Gd~F~v~~~~~i~i~q~ 196 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAF-VL-NLK---NKATLVSWSPQ--GDHFVVSGRNKIDIYQL 196 (362)
T ss_pred EEEcCCceeeeehhhcCccce-ee-ccC---CcceeeEEcCC--CCEEEEEeccEEEEEec
Confidence 999999999999997766211 11 111 22234777776 66566555555555543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=140.41 Aligned_cols=195 Identities=13% Similarity=0.192 Sum_probs=141.0
Q ss_pred CCEEEE---EeCCCcEEEEECC-CCc---EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcce
Q 000836 1047 SPIVVA---ADENERIKIWNYE-EDT---LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK 1119 (1262)
Q Consensus 1047 g~~Las---gs~dg~I~VWD~~-tg~---~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~ 1119 (1262)
.+++++ ++..|...|.-+. +|+ ....+.+|. +.|.++.|+ +.+...+++||.|.+|.||++....-...
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt---~~vLDi~w~-PfnD~vIASgSeD~~v~vW~IPe~~l~~~ 119 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHT---APVLDIDWC-PFNDCVIASGSEDTKVMVWQIPENGLTRD 119 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCcc---ccccccccC-ccCCceeecCCCCceEEEEECCCcccccC
Confidence 344444 3334455554443 232 233467788 899999997 77889999999999999999975211222
Q ss_pred EEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEE
Q 000836 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1262)
Q Consensus 1120 lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatG 1198 (1262)
+......+.+|...|.- +.|+|.-. .|+++|.|.+|.+||+.+++ .+.++. |.+- |.++ +|+.+|.+|++.
T Consensus 120 ltepvv~L~gH~rrVg~----V~wHPtA~NVLlsag~Dn~v~iWnv~tge-ali~l~-hpd~-i~S~-sfn~dGs~l~Tt 191 (472)
T KOG0303|consen 120 LTEPVVELYGHQRRVGL----VQWHPTAPNVLLSAGSDNTVSIWNVGTGE-ALITLD-HPDM-VYSM-SFNRDGSLLCTT 191 (472)
T ss_pred cccceEEEeecceeEEE----EeecccchhhHhhccCCceEEEEeccCCc-eeeecC-CCCe-EEEE-EeccCCceeeee
Confidence 22334677888877765 99999654 67777999999999999999 888877 7776 9999 899999999999
Q ss_pred ECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec----CCceEEEeccc
Q 000836 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP----KCLPSFSDLIY 1258 (1262)
Q Consensus 1199 s~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS----dd~I~~WDLry 1258 (1262)
+.|.+|||||.|+++ ++..-..|.|+. -..+.|-.+ +..+.||- +-.+.+||-..
T Consensus 192 ckDKkvRv~dpr~~~-~v~e~~~heG~k--~~Raifl~~--g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGT-VVSEGVAHEGAK--PARAIFLAS--GKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred cccceeEEEcCCCCc-EeeecccccCCC--cceeEEecc--CceeeeccccccccceeccCccc
Confidence 999999999999998 443333555433 345667777 66444443 22888898643
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-12 Score=136.32 Aligned_cols=196 Identities=18% Similarity=0.276 Sum_probs=147.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEE---Ee-eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLN---SF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~-~tg~~l~---~~-~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
....+++|+|||.+|++|. +..|+|+|+ +.|.... ++ ++.....+.|.+++|+ +.+...++.|+....+-||.
T Consensus 159 taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s-P~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 159 TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS-PMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeecc-CCCCcceeeecccceeeeEe
Confidence 3457999999999999887 899999999 4453211 11 1111112678999997 77888999999998888887
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEeecCCCCCCeeEEE-EE
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALT-AS 1188 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa-~~ 1188 (1262)
-.. ..+ ...+.+|.+.|+. +.|.++|+.+++|.. |..|..||+|....++..+..|.+..-..|- -.
T Consensus 237 ~~~--~~p-----l~llggh~gGvTh----L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 237 DDG--RRP-----LQLLGGHGGGVTH----LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred cCC--CCc-----eeeecccCCCeee----EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 654 222 2567799999999 999999999999954 7789999999877678788777653223341 23
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
.+.+++|++|+.||.|++||+......+.. ...|+..++.|+++|- -.++++++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv---~~~~sd~vNgvslnP~--mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSV---TGNYSDTVNGVSLNPI--MPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccc---cccccccccceecCcc--cceeeeccCc
Confidence 578999999999999999999874433433 3355788999999999 7788887754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=133.09 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=142.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|..+|.|+.+.+....+++|+.|++|++||.........+... ..|.++.. .++.|++|..|..|.+||++
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~----kkVy~~~v----~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG----KKVYCMDV----SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC----ceEEEEec----cCCEEEEeecCceEEEEEcc
Confidence 46788999999999999999999999999999975555444333 48888877 47899999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeeEeecCCCCC--------C
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ---QMVNPIPSSSDC--------S 1181 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~---~~v~ti~~hs~~--------~ 1181 (1262)
..+...+ +.-....-.+++ ++.-|.+.-.++++-||.|.+=.++... ..-..|..|... +
T Consensus 164 n~~~~~q-----~reS~lkyqtR~----v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 164 NLDEPFQ-----RRESSLKYQTRC----VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred cccchhh-----hccccceeEEEE----EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 7221110 111122344666 6666777777888899998876666542 034455555432 6
Q ss_pred eeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK 1248 (1262)
Q Consensus 1182 VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd 1248 (1262)
|++| .|+|--..|+||+.||.|.+||..+.+.+ + .+.+....|.+++|+.+ |..||.|++
T Consensus 235 VNai-~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~---q~~~~~~SI~slsfs~d--G~~LAia~s 294 (323)
T KOG1036|consen 235 VNAI-AFHPIHGTFATGGSDGIVNIWDLFNRKRL-K---QLAKYETSISSLSFSMD--GSLLAIASS 294 (323)
T ss_pred ecee-EeccccceEEecCCCceEEEccCcchhhh-h---hccCCCCceEEEEeccC--CCeEEEEec
Confidence 8999 78888889999999999999999877733 2 33333577999999999 889998873
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=131.70 Aligned_cols=205 Identities=13% Similarity=0.225 Sum_probs=156.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.+|.-.+-.+-.-..+.++++++.|..|.+|+.+ |+.+.++.... ..-+..+.+ ++|+++++++..--|+||.+
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---~~n~~aavS--P~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---SSNYDAAVS--PDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc---ccccceeeC--CCCcEEEEecCCCCceEEEE
Confidence 4455556666667788999999999999999999 99998887665 555667776 99999999999999999997
Q ss_pred C-CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eeeEee--cCCC-CCC
Q 000836 1112 Y-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPI--PSSS-DCS 1181 (1262)
Q Consensus 1112 ~-~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~------~~v~ti--~~hs-~~~ 1181 (1262)
- ..+|..+-+.....+++|...|.. .+|+++...+++.+.||++|+||++-.- ..++.. +.|. ++.
T Consensus 258 ~f~kdG~fqev~rvf~LkGH~saV~~----~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGHQSAVLA----AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EeccCcchhhhhhhheeccchhheee----eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 3 335665555555678999999998 9999999999999999999999976432 022222 1121 111
Q ss_pred eeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEE
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSF 1253 (1262)
Q Consensus 1182 VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~ 1253 (1262)
-..+ ..+|+|..|+..++ ..+++|..+.++..-+. ...|...|.+++|+++ |++++|+++-.+++
T Consensus 334 p~RL-~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~---e~~h~~~Is~is~~~~--g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 334 PVRL-ELSPSGDSLAVSFG-SDLKVFASEDGKDYPEL---EDIHSTTISSISYSSD--GKYIATCGDRYVRV 398 (420)
T ss_pred ceEE-EeCCCCcEEEeecC-CceEEEEcccCccchhH---HHhhcCceeeEEecCC--CcEEeeecceeeee
Confidence 2356 77899999988775 57999999887733211 2357799999999999 99999999875554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=143.94 Aligned_cols=204 Identities=18% Similarity=0.209 Sum_probs=141.6
Q ss_pred eEEEEEcC---CCCEEEEEeCCCcEEEEECCCC------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1038 TKTALLQP---FSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1038 V~sl~fsp---dg~~Lasgs~dg~I~VWD~~tg------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
+.+..|++ ....|+.+.++|.|.++|.+.- ..+..+..|. ..|.++.|. +....|++++.|.++|+
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~---nAifDl~wa--pge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK---NAIFDLKWA--PGESLLVSASGDSTIRP 126 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc---ceeEeeccC--CCceeEEEccCCceeee
Confidence 35567765 3458899999999999998753 2245677888 899999997 56678999999999999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEE-EEeCCCeEEEEeCCCCce------------------
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY-ASGEVSSIMLWDLEKEQQ------------------ 1169 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Ll-sgg~Dg~IrIWDlrs~~~------------------ 1169 (1262)
||+.. ++. + -.+.+.+|...|.+ ++|.+.+..++ +||.||.|.|||++-...
T Consensus 127 Wdvk~--s~l--~-G~~~~~GH~~SvkS----~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 127 WDVKT--SRL--V-GGRLNLGHTGSVKS----ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred eeecc--cee--e-cceeecccccccch----hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99976 222 2 11347899999999 88888777555 557899999999985430
Q ss_pred --------eeEeecCCCCC---CeeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcee-----eeecCCCCC---CCCe
Q 000836 1170 --------MVNPIPSSSDC---SISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLV-----CSTRPHTQQ---VERV 1229 (1262)
Q Consensus 1170 --------~v~ti~~hs~~---~VtsLa~~s~~g~lLatGs~-DGsVrIWDlrs~~~~v-----~~~~~~~gH---~~~V 1229 (1262)
.+..-.++... .|+.+ .+. +...|++++. |+.|+|||+|...... ... .+.-| .-.+
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv-~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-~~~t~skrs~G~ 274 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVV-LFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-KYPTHSKRSVGQ 274 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEE-EEe-ccceeeeccCCCcceEEEeecccccccccCCCccc-CccCcccceeee
Confidence 00111112221 25555 454 5567777666 9999999999754211 111 11112 3467
Q ss_pred EEEEEecCCCCCEEEEecCCceEEEecccc
Q 000836 1230 VGISFQPGLDPAKVNGTPKCLPSFSDLIYF 1259 (1262)
Q Consensus 1230 ~slafsp~~~g~~LaSgSdd~I~~WDLryf 1259 (1262)
+++..... |...+|++.|+.|.+|+++-.
T Consensus 275 ~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 275 VNLILDSS-GTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEEecCC-CCeEEEEecCCcEEEEecccc
Confidence 88888777 455667777889999998753
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-12 Score=146.75 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=145.2
Q ss_pred EcCCCCEEEE--EeCCCcEEEEECCCC-c----EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1043 LQPFSPIVVA--ADENERIKIWNYEED-T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1043 fspdg~~Las--gs~dg~I~VWD~~tg-~----~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
|+.+...+++ ++..|.|-||++..- + .+-.+.+ +..|+++.|. +-|...|+++++||.|++|.+....
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N----gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN----GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc----CceeeecccC-CCChHHeeecccCceEEEEEeccCC
Confidence 5555666665 556899999999753 2 2223333 3589999996 7889999999999999999998633
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
......+.-..++.|...|++ +.|+|-- ..|++++.|-+|++||+++.+ ....+.+|.+. |.++ +|+++|+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~s----lRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdq-If~~-AWSpdGr~ 734 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITS----LRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQ-IFGI-AWSPDGRR 734 (1012)
T ss_pred CCcccCCcceeeecccceEEE----EEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCc-eeEE-EECCCCcc
Confidence 333233334667889999999 9999954 467777999999999999999 88899999998 9999 89999999
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
+++.+.||+|+||..|+++..+..-+...| ..-..|.|--+ |++++..+
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacd--gr~viv~G 783 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACD--GRIVIVVG 783 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEec--CcEEEEec
Confidence 999999999999999998865544322222 33356778777 66666555
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-10 Score=129.84 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCC
Q 000836 1038 TKTALLQPFSPIVVAA-DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasg-s~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG-~IrIWD~~~~~ 1115 (1262)
+..+.|+|+++.++++ +.++.|++||+.+++.+..+..+. .+.++.|+ +++.++++++.++ .+.+||...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~----~~~~~~~~--~dg~~l~~~~~~~~~~~~~d~~~-- 146 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV----EPEGMAVS--PDGKIVVNTSETTNMAHFIDTKT-- 146 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC----CcceEEEC--CCCCEEEEEecCCCeEEEEeCCC--
Confidence 5678999999977655 468999999999888877776433 46789997 8999999988775 467788764
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeecCCCC-----C-CeeEEEEE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSD-----C-SISALTAS 1188 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~~~~v~ti~~hs~-----~-~VtsLa~~ 1188 (1262)
++. . .... ....... +.|++++..+++++ .++.|++||+++++ .+..+..+.. . ....+ .+
T Consensus 147 ~~~--~---~~~~-~~~~~~~----~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~ 214 (300)
T TIGR03866 147 YEI--V---DNVL-VDQRPRF----AEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGI-KL 214 (300)
T ss_pred CeE--E---EEEE-cCCCccE----EEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccce-EE
Confidence 222 1 1111 1122344 78999999887665 58999999999988 7776643211 1 12456 67
Q ss_pred cCCCCEEEE-EECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceEEEeccc
Q 000836 1189 QVHGGQLAA-GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDLIY 1258 (1262)
Q Consensus 1189 s~~g~lLat-Gs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~~WDLry 1258 (1262)
+++++.+++ .+.++.|.+||.++.+ ..... . +...+.+++|+|+ +.+|++++ ++.+.+||+.-
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~-~~~~~-~---~~~~~~~~~~~~~--g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYE-VLDYL-L---VGQRVWQLAFTPD--EKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCc-EEEEE-E---eCCCcceEEECCC--CCEEEEEcCCCCeEEEEECCC
Confidence 888987544 4557789999998776 33322 1 2356899999999 77887764 45999999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=133.41 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=148.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
.-|.|+.|.++|+ +++|+.+|+|.||+..+.+.......|. +.|.+++.. .+|.+ ++|+.|..|..||-.-.+
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~l--r~Gtl-lSGgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD---GGVFSLCML--RDGTL-LSGGKDRKIILWDDNYRK 319 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC---CceEEEEEe--cCccE-eecCccceEEeccccccc
Confidence 4599999999887 8899999999999998888777777888 899999996 66654 559999999999943100
Q ss_pred ----------Ccce---------EEeee--------------eeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEE
Q 000836 1116 ----------DKQK---------LVTAF--------------SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1116 ----------g~~~---------lvsa~--------------~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW 1162 (1262)
|... ++..- ....+|....+. ++-+|+..+++++|.|+.+++|
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg----la~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG----LATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee----EEcCCChhheeeccCcceEEEc
Confidence 0000 00000 112345555555 6777888899999999999999
Q ss_pred eCCCCc------------------------------------eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEE
Q 000836 1163 DLEKEQ------------------------------------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1262)
Q Consensus 1163 Dlrs~~------------------------------------~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrI 1206 (1262)
+-.+-. +.+.++... ..+++++ .++++|.+||.|+.|+.|.|
T Consensus 396 ~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v-~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 396 NDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVV-RYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred cCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEE-EEcCCCCEEEEecCCCeEEE
Confidence 832211 011122222 2248888 89999999999999999999
Q ss_pred EECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1207 WDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
|-+.............. .++|+.+.|+++ +++|.+-|.| .|.+|+
T Consensus 474 y~Vs~~g~~y~r~~k~~--gs~ithLDwS~D--s~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCS--GSPITHLDWSSD--SQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEECCCCcEEEEeeeec--CceeEEeeecCC--CceEEeccCceEEEEEc
Confidence 99876664444433343 389999999999 9999999977 888994
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=137.96 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=136.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~ 1118 (1262)
.+++|+.+|..+++|+.||++|||+|.+...+.....|. +.|.++.|+ +||.+|++-+.| ..+||+..+ +..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---~eV~DL~FS--~dgk~lasig~d-~~~VW~~~~--g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---AEVKDLDFS--PDGKFLASIGAD-SARVWSVNT--GAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---CccccceeC--CCCcEEEEecCC-ceEEEEecc--Cch
Confidence 689999999999999999999999999888888888888 899999998 999999999999 999999987 311
Q ss_pred eEEeeeeecc--CCCCcccccceeEEEcCCC---CEEEEE--eCCCeEEEEeCCCCce----eeEeecCCCCCCeeEEEE
Q 000836 1119 KLVTAFSSIQ--GHKPGVRCSNVVVDWQQQS---GYLYAS--GEVSSIMLWDLEKEQQ----MVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1119 ~lvsa~~~l~--~h~~~V~sv~l~v~wsp~~---~~Llsg--g~Dg~IrIWDlrs~~~----~v~ti~~hs~~~VtsLa~ 1187 (1262)
+.... +....... +.|..++ .+.+.+ ..-+.|+.||+..... ...+......+ |+++ .
T Consensus 220 -----~a~~t~~~k~~~~~~----cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s-iSsl-~ 288 (398)
T KOG0771|consen 220 -----LARKTPFSKDEMFSS----CRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS-ISSL-A 288 (398)
T ss_pred -----hhhcCCcccchhhhh----ceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc-ceeE-E
Confidence 11111 11111222 5666555 333333 4456677777654431 12222222333 9999 8
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
.+.+|++++.|+.||.|-|++..+.+. +.. .-+.|...|+.+.|+|+ .+++++-+.+
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~-~~~--vk~aH~~~VT~ltF~Pd--sr~~~svSs~ 345 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQR-LQY--VKEAHLGFVTGLTFSPD--SRYLASVSSD 345 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeee-eEe--ehhhheeeeeeEEEcCC--cCcccccccC
Confidence 899999999999999999999987662 222 23467889999999999 7777776644
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-11 Score=141.45 Aligned_cols=191 Identities=14% Similarity=0.277 Sum_probs=146.8
Q ss_pred EEEEEeCCCcEEEEECCCC---cEEEE--e---------eC------C--------------CCCCCCeEEEEEeecCCC
Q 000836 1049 IVVAADENERIKIWNYEED---TLLNS--F---------DN------H--------------DFPDKGISKLCLVNELDV 1094 (1262)
Q Consensus 1049 ~Lasgs~dg~I~VWD~~tg---~~l~~--~---------~~------h--------------~~~~~~ItsL~fsn~~dg 1094 (1262)
.+++++.||+|++||+..+ ...+. + .. | -.....|.+++.+ ++|
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS--p~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS--PDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC--CCc
Confidence 5889999999999999752 11110 0 00 0 0112568999997 999
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC---CCCEEEEEeCCCeEEEEeCCCCceee
Q 000836 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ---QSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1095 ~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp---~~~~Llsgg~Dg~IrIWDlrs~~~~v 1171 (1262)
.+|++|..-|++|||++..... ...+..|...|.+ +.|+. ....|++++.|+.|.|+|+..+-..+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~-------~~~~eAHesEilc----LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEY-------TCFMEAHESEILC----LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceecccCccCceEEEEehhhhh-------hhheecccceeEE----EeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9999999999999999976211 1356789999988 77764 23467778999999999998765466
Q ss_pred EeecCCCCCCeeEEE------------------------------------------------EEcCCCCEEEEEECCCc
Q 000836 1172 NPIPSSSDCSISALT------------------------------------------------ASQVHGGQLAAGFVDGS 1203 (1262)
Q Consensus 1172 ~ti~~hs~~~VtsLa------------------------------------------------~~s~~g~lLatGs~DGs 1203 (1262)
+++.+|+.+ |+++. ...++..++++++.|..
T Consensus 541 qtld~HSss-ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 541 QTLDGHSSS-ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhcccccc-eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 677776665 66652 23456678999999999
Q ss_pred EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1204 VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
|||||+.+++ ..+.++..++|.+....+...|. |-+|++...| ++.|+|.
T Consensus 620 irif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPS--giY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 620 IRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPS--GIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred eEEEeccccc-eeeeecccccCCCceEEEEECCC--ccEEEEeecCCceEEEEe
Confidence 9999999988 67788888889899999999999 9999988866 9999986
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-11 Score=127.76 Aligned_cols=201 Identities=10% Similarity=0.163 Sum_probs=147.9
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc---EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1032 TRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT---LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1032 ~~~~~~V~sl~fsp-dg~~Lasgs~dg~I~VWD~~tg~---~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
..+..++++..|+. +-+++.+++-|.+..|||++++. ....+-+|. ..|.+++|. ...-..|++.+.||+||
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD---KEV~DIaf~-~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD---KEVYDIAFL-KGSRDVFASVGADGSVR 222 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC---cceeEEEec-cCccceEEEecCCCcEE
Confidence 34567888999986 55688899999999999999873 345577888 899999997 44457899999999999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS--GEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg--g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
+||++..+... ++ ..-......... ++|+++...++++ -+...|.|-|+|....++..+..|... |+.+
T Consensus 223 mFDLR~leHST-II---YE~p~~~~pLlR----LswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~-VNgI 293 (364)
T KOG0290|consen 223 MFDLRSLEHST-II---YEDPSPSTPLLR----LSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS-VNGI 293 (364)
T ss_pred EEEecccccce-EE---ecCCCCCCccee----eccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc-ccce
Confidence 99998722211 11 111111122233 7888766654444 445779999999876689999999997 9999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCc-----eeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCc
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDM-----LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCL 1250 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DGsVrIWDlrs~~~-----~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~ 1250 (1262)
++.+..+..+.+++.|..+.|||+..... +...+ . -.+.|+.++|++. .+..++.+..+.
T Consensus 294 aWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay---~-a~~EVNqi~Ws~~-~~Dwiai~~~kk 358 (364)
T KOG0290|consen 294 AWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY---T-AGGEVNQIQWSSS-QPDWIAICFGKK 358 (364)
T ss_pred EecCCCCceeeecCCcceEEEEecccccccCCCCchhhh---h-ccceeeeeeeccc-CCCEEEEEecCe
Confidence 66666778999999999999999975432 22222 1 3478999999977 577888887663
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-10 Score=126.73 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=134.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEE-EEEeCCCeEEEEEcCCCCCcceEEeeee
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lL-aTgS~DG~IrIWD~~~~~g~~~lvsa~~ 1125 (1262)
+..+++++.|+.|++||..+++.+..+..+. .+.++.|+ +++..+ ++++.++.|++||... ++. . +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~--~~~--~---~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITLS--KDGKLLYVCASDSDTIQVIDLAT--GEV--I---G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEEC--CCCCEEEEEECCCCeEEEEECCC--CcE--E---E
Confidence 3578888999999999999999888887654 36679997 777765 6778899999999875 322 1 2
Q ss_pred eccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCC-c
Q 000836 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-S 1203 (1262)
Q Consensus 1126 ~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DG-s 1203 (1262)
.+..+.. +.. +.|+++++.++++ +.++.|++||+++.+ .+..+..+.. +.++ .++++|.+++++..++ .
T Consensus 68 ~~~~~~~-~~~----~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~--~~~~-~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 68 TLPSGPD-PEL----FALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGVE--PEGM-AVSPDGKIVVNTSETTNM 138 (300)
T ss_pred eccCCCC-ccE----EEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCCC--cceE-EECCCCCEEEEEecCCCe
Confidence 2332222 333 7899999988776 568999999999988 8887765433 5777 7889999999988875 4
Q ss_pred EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEE-Eec-CCceEEEeccc
Q 000836 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVN-GTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1204 VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~La-SgS-dd~I~~WDLry 1258 (1262)
+.+||.++.+. .... .. ...+.++.|+++ ++.|+ ++. ++.+.+||+..
T Consensus 139 ~~~~d~~~~~~-~~~~-~~---~~~~~~~~~s~d--g~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 139 AHFIDTKTYEI-VDNV-LV---DQRPRFAEFTAD--GKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred EEEEeCCCCeE-EEEE-Ec---CCCccEEEECCC--CCEEEEEcCCCCEEEEEEcCc
Confidence 67789887652 2222 11 234578999999 77775 443 45999999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=138.09 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=154.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~-~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+. +|. ..|.+++|.+.....++++|..|..|++||
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4677889999999999999999999999999999888887775 466 889999999666778999999999999999
Q ss_pred cCCCCCc---ceEEeeeeeccCCCCcccccceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCC-------
Q 000836 1111 DYDQKDK---QKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD------- 1179 (1262)
Q Consensus 1111 ~~~~~g~---~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~------- 1179 (1262)
+...++. .-+....+.+..|...|.. ++-.|.+ ..+.+++.||+|+-+|+|....|-.....+..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKr----ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKR----IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhh----eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9753221 1122233556778888888 6666777 56778899999999999975422222211110
Q ss_pred -CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-----------------eeeeecCCCCCC-----------CCeE
Q 000836 1180 -CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----------------LVCSTRPHTQQV-----------ERVV 1230 (1262)
Q Consensus 1180 -~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~-----------------~v~~~~~~~gH~-----------~~V~ 1230 (1262)
-...|++..+.+..+|++|+.|-.+++||.|.... ++..+. .+|. ..++
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeE
Confidence 02566644455677999999999999999552110 121111 1121 1357
Q ss_pred EEEEecCCCCCEEEEecCCceEEEeccc
Q 000836 1231 GISFQPGLDPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1231 slafsp~~~g~~LaSgSdd~I~~WDLry 1258 (1262)
-+.|+|+ |...|++-+...+.++|+.+
T Consensus 278 ~vtfnpN-GtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 278 YVTFNPN-GTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EEEECCC-CcEEEEeeCCeEEEEEeecC
Confidence 7899999 45556666666888888754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=143.08 Aligned_cols=206 Identities=16% Similarity=0.207 Sum_probs=144.5
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe
Q 000836 1034 FEKGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1105 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg-------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~ 1105 (1262)
++.-|+.+.|.|++ ..|+++++||.|++|.+..+ .....+..|. ..|+++.|. +-..+.|++++.|-+
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~---eKI~slRfH-PLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG---EKITSLRFH-PLAADVLAVASYDST 701 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc---ceEEEEEec-chhhhHhhhhhccce
Confidence 35679999999954 58999999999999998764 3445577787 899999995 778899999999999
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
|++||+...... ..+.+|++.|.+ ++|+|+|..+++.+.||.|+||.-++..+++..-++..+..--.|
T Consensus 702 i~lWDl~~~~~~-------~~l~gHtdqIf~----~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 702 IELWDLANAKLY-------SRLVGHTDQIFG----IAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred eeeeehhhhhhh-------heeccCcCceeE----EEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 999999873222 357899999999 999999999999999999999999987657776665544323344
Q ss_pred EEEcCCCCEEEEEECC----CcEEEEECCCCC-ceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1186 TASQVHGGQLAAGFVD----GSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~D----GsVrIWDlrs~~-~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
.|--+|+++++.+-| ..|.+||..+-. ..+.+. .... .-.+.--.+.++ .+-.+++|-.| .|..+.+.|
T Consensus 771 -~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~-~lDv-aps~LvP~YD~D-s~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 771 -LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ-VLDV-APSPLVPHYDYD-SNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -EEEecCcEEEEecccccchhhhhhhhhhhccCCcceee-eecc-cCccccccccCC-CceEEEecCCCceEEEEEecC
Confidence 344467766554444 457788776433 111111 1110 011111234455 34556676655 777777654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-11 Score=129.98 Aligned_cols=202 Identities=14% Similarity=0.186 Sum_probs=146.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCC--CCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEE
Q 000836 1044 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNH--DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1262)
Q Consensus 1044 spdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h--~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lv 1121 (1262)
.|+..++++.+.+.-|++||..+|+...++..- ..+-..-.+++|+ +||..|.+|. ...|||||+.. .|...-+
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs--~DGeqlfaGy-krcirvFdt~R-pGr~c~v 195 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS--PDGEQLFAGY-KRCIRVFDTSR-PGRDCPV 195 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec--CCCCeEeecc-cceEEEeeccC-CCCCCcc
Confidence 367779999999999999999999888777653 2222345689997 8999999875 66999999944 2332222
Q ss_pred -eeeee-ccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEE
Q 000836 1122 -TAFSS-IQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1262)
Q Consensus 1122 -sa~~~-l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatG 1198 (1262)
+.+.. -.+..+.+.+ ++++|... .+++|+....+-|+.-.... ++..+-+|.++ ||.+ .|.++|+.|.+|
T Consensus 196 y~t~~~~k~gq~giisc----~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gG-vThL-~~~edGn~lfsG 268 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISC----FAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGG-VTHL-QWCEDGNKLFSG 268 (406)
T ss_pred hhhhhcccccccceeee----eeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCC-eeeE-EeccCcCeeccc
Confidence 11111 1222344444 88999766 67777888888888777777 89999999998 9999 889999999998
Q ss_pred EC-CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1199 FV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1199 s~-DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
.. |-.|..||+|....++..+..+.+.++.=.-....|. +++|++|+ ++.|++||+.-
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCC
Confidence 76 7889999999877565444333322222223444566 99999997 55999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=132.99 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=152.0
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1027 ~~~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
...|......++.|+.|||.| .++.|...|...|.|.++...+..-.. + ..+++++|+ ++|.+|+.||.|+.|
T Consensus 399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---~~ls~v~ys--p~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---EQLSVVRYS--PDGAFLAVGSHDNHI 471 (626)
T ss_pred ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---CceEEEEEc--CCCCEEEEecCCCeE
Confidence 445666677889999999999 999999999999999998555443333 5 799999997 999999999999999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------------eeeEe
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-------------QMVNP 1173 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-------------~~v~t 1173 (1262)
.||.+.. +..+.. +.-+.+.+.|+. ++|+++++++.+-+.|-.|-.|....-+ .|..-
T Consensus 472 yiy~Vs~--~g~~y~---r~~k~~gs~ith----LDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 472 YIYRVSA--NGRKYS---RVGKCSGSPITH----LDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred EEEEECC--CCcEEE---EeeeecCceeEE----eeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 9999976 222222 222333477777 9999999999999999999999433222 01111
Q ss_pred ec---CCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-
Q 000836 1174 IP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC- 1249 (1262)
Q Consensus 1174 i~---~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd- 1249 (1262)
|. +..+..|..+ +-+.+..++++|...|+|++|.-.... ....+..+.+|++-|++|+|.-+ ..+|++.+.|
T Consensus 543 F~v~g~s~~t~i~a~-~rs~~~~~lA~gdd~g~v~lf~yPc~s-~rA~~he~~ghs~~vt~V~Fl~~--d~~li~tg~D~ 618 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAV-ARSHCEKLLASGDDFGKVHLFSYPCSS-PRAPSHEYGGHSSHVTNVAFLCK--DSHLISTGKDT 618 (626)
T ss_pred EEEecccCCchHHHh-hhhhhhhhhhccccCceEEEEccccCC-CcccceeeccccceeEEEEEeeC--CceEEecCCCc
Confidence 11 1111124444 445677899999999999999765433 11122345688999999999988 5666666655
Q ss_pred ceEEEec
Q 000836 1250 LPSFSDL 1256 (1262)
Q Consensus 1250 ~I~~WDL 1256 (1262)
++..|++
T Consensus 619 Si~qW~l 625 (626)
T KOG2106|consen 619 SIMQWRL 625 (626)
T ss_pred eEEEEEe
Confidence 9999987
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=134.40 Aligned_cols=213 Identities=17% Similarity=0.259 Sum_probs=148.3
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
|.......|..++|-|||..|+.+. +..+.|||...|..++++++|. ..|.+++|+ .||..+++|+.|..|.+|
T Consensus 7 ~r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK---DtVycVAys--~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 7 WRDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYA--KDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhcccccchheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc---ceEEEEEEc--cCCceeccCCCceeEEEe
Confidence 4444445799999999999888876 6789999999999999999999 899999997 899999999999999999
Q ss_pred EcCCCCCcce-----EEee--ee----------------------eccCCCCcccccceeEEEcCCCCEEEEEeCCCeEE
Q 000836 1110 KDYDQKDKQK-----LVTA--FS----------------------SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1262)
Q Consensus 1110 D~~~~~g~~~-----lvsa--~~----------------------~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~Ir 1160 (1262)
.... +|-.+ .+.. +. ....|...++. .+++|..+|.+++.|-.+|+|.
T Consensus 81 ~~kl-EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~--~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 81 TSKL-EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI--ICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred cccc-cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE--EEeeecCCCcEEEEeccCceEE
Confidence 8754 11110 0000 00 01112222221 1389999999999999999998
Q ss_pred EEeCCCCceeeEeecCCCCCCeeEEE---------------------------------------------EEcCCCCEE
Q 000836 1161 LWDLEKEQQMVNPIPSSSDCSISALT---------------------------------------------ASQVHGGQL 1195 (1262)
Q Consensus 1161 IWDlrs~~~~v~ti~~hs~~~VtsLa---------------------------------------------~~s~~g~lL 1195 (1262)
+-+-..+....-.-++...++|.+++ .+-++|.++
T Consensus 158 iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 158 IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEE
Confidence 87654443111222233333344442 234567888
Q ss_pred EEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
+.|+.|+.+++|... +- ... +......||+.|+.+|+ ++.++.|+ |+++..+++.+
T Consensus 238 LiGGsdk~L~~fTR~-Gv-rLG---Tvg~~D~WIWtV~~~PN--sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRD-GV-RLG---TVGEQDSWIWTVQAKPN--SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEccCCCceEEEeec-Ce-EEe---eccccceeEEEEEEccC--CceEEEEEccCeeehhhhHH
Confidence 888888888888654 22 122 22234589999999999 88999888 55888777654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=120.58 Aligned_cols=195 Identities=18% Similarity=0.204 Sum_probs=139.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE------EEEee--CCC--CCCCCeEEEEEeecCCCcEEEEEe
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL------LNSFD--NHD--FPDKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~------l~~~~--~h~--~~~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
..|+.++..++|+ ..+|++|+ ||.|+-|.|..... +...+ -+. .+--.|++|... +..+.+ +.++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi-~~Ag 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSI-LFAG 133 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcE-EEec
Confidence 4678899999999 56788887 69999999975321 11111 111 112468888775 344444 4445
Q ss_pred CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC----
Q 000836 1102 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---- 1177 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h---- 1177 (1262)
.|+.+.-||+++ |+.+ +.+++|++.+.+ +.-....+.+++|+.||++|+||.++.+ ++..+...
T Consensus 134 GD~~~y~~dlE~--G~i~-----r~~rGHtDYvH~----vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 134 GDGVIYQVDLED--GRIQ-----REYRGHTDYVHS----VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPN 201 (325)
T ss_pred CCeEEEEEEecC--CEEE-----EEEcCCcceeee----eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChh
Confidence 899999999987 6654 678999999998 5555668899999999999999999999 88887532
Q ss_pred -----CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ce
Q 000836 1178 -----SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LP 1251 (1262)
Q Consensus 1178 -----s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I 1251 (1262)
-+..|.++ ..+...+++|++ ..+.+|.+|..+ ..+++ ... ++|..+.|..+ .+++++++ .+
T Consensus 202 ~lRp~~g~wigal---a~~edWlvCGgG-p~lslwhLrsse-~t~vf-pip---a~v~~v~F~~d----~vl~~G~g~~v 268 (325)
T KOG0649|consen 202 LLRPDWGKWIGAL---AVNEDWLVCGGG-PKLSLWHLRSSE-STCVF-PIP---ARVHLVDFVDD----CVLIGGEGNHV 268 (325)
T ss_pred hcCcccCceeEEE---eccCceEEecCC-CceeEEeccCCC-ceEEE-ecc---cceeEeeeecc----eEEEeccccce
Confidence 22235555 345667877764 578999999887 56666 443 67888888766 56666654 66
Q ss_pred EEEec
Q 000836 1252 SFSDL 1256 (1262)
Q Consensus 1252 ~~WDL 1256 (1262)
.-|.+
T Consensus 269 ~~~~l 273 (325)
T KOG0649|consen 269 QSYTL 273 (325)
T ss_pred eeeee
Confidence 66654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=133.26 Aligned_cols=209 Identities=16% Similarity=0.228 Sum_probs=147.3
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
-..|.+.|.++..+|.|.+|++|++||+|+||.+.+|.|+.++.-. +.|.|++|++..+-.+|+++- .+.+.|-+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn 470 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAV-GECVLIVN 470 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence 3457788999999999999999999999999999999999998755 489999997333434455444 33455554
Q ss_pred cCCCC------------------CcceEEeee------------eeccCCCCcccccceeEEEcCCCCEEEEE---eCCC
Q 000836 1111 DYDQK------------------DKQKLVTAF------------SSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVS 1157 (1262)
Q Consensus 1111 ~~~~~------------------g~~~lvsa~------------~~l~~h~~~V~sv~l~v~wsp~~~~Llsg---g~Dg 1157 (1262)
..-++ .....+..| +..-.|...|+. +.|+..|.++++. +...
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~----vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ----VTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce----eeeecCCceEEEeccCCCcc
Confidence 32110 000001112 122235566777 9999999999988 3356
Q ss_pred eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.|.|.++...+ ...-|.-..+. |.++ .|++...+|++++. ..|||||+...+ ++..+.+. ..||.+++.||.
T Consensus 547 ~VliHQLSK~~-sQ~PF~kskG~-vq~v-~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg---~kwiS~msihp~ 618 (733)
T KOG0650|consen 547 SVLIHQLSKRK-SQSPFRKSKGL-VQRV-KFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTG---SKWISSMSIHPN 618 (733)
T ss_pred eEEEEeccccc-ccCchhhcCCc-eeEE-EecCCCceEEEEec-cceEEEehhHHH-HHHHHhcC---CeeeeeeeecCC
Confidence 78999998777 44445444444 8888 88888888888875 679999998755 44333232 478999999999
Q ss_pred CCCCEEEEec-CCceEEEeccc
Q 000836 1238 LDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1238 ~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
|..|+.|+ ++.+..+|+-.
T Consensus 619 --GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 619 --GDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred --CCeEEEecCCCeeEEEEccc
Confidence 77777777 45888888754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.7e-11 Score=132.60 Aligned_cols=200 Identities=16% Similarity=0.267 Sum_probs=154.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1034 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED---------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg---------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
...+|..+.|++++. .++||+.|..|+||-++.+ +.+..+..|. ..|+.+.|+ ++|++|++|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~---~aVN~vRf~--p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT---RAVNVVRFS--PDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc---ceeEEEEEc--CCcCeeeecCCC
Confidence 457899999999776 9999999999999988653 2334566677 899999997 899999999999
Q ss_pred CeEEEEEcCCC-----CC----cceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 000836 1104 GNIRIWKDYDQ-----KD----KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1262)
Q Consensus 1104 G~IrIWD~~~~-----~g----~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti 1174 (1262)
|.|.+|..... +. ..+.-..++.+.+|...+.. ++|+|++..+++++-|..+++||++.++ .+..+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd----L~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD----LAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAIL 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh----hhccCCCceeeeeeccceEEEEEeccce-eEeec
Confidence 99999987620 01 01112234677889999999 9999999999999999999999999999 88999
Q ss_pred cCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee--e--eecCCCC-----------C----CCCeEEEEEe
Q 000836 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV--C--STRPHTQ-----------Q----VERVVGISFQ 1235 (1262)
Q Consensus 1175 ~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v--~--~~~~~~g-----------H----~~~V~slafs 1235 (1262)
..|... +..+ +|.+.+.++++-+.|...+++++...+... . .+....+ | ......++|+
T Consensus 162 ~dh~~y-vqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 162 DDHEHY-VQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred cccccc-ccee-ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 999887 9999 788899999999999877777765433110 0 1100000 1 1234568899
Q ss_pred cCCCCCEEEEec
Q 000836 1236 PGLDPAKVNGTP 1247 (1262)
Q Consensus 1236 p~~~g~~LaSgS 1247 (1262)
|+ |..|++.+
T Consensus 240 Pd--G~llvtPa 249 (434)
T KOG1009|consen 240 PD--GSLLVTPA 249 (434)
T ss_pred CC--CcEEEccc
Confidence 99 88888876
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=123.91 Aligned_cols=196 Identities=24% Similarity=0.489 Sum_probs=152.7
Q ss_pred CeEEEEE-cCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-CCeEEEEEc
Q 000836 1037 GTKTALL-QPFSP-IVVAADE-NERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1262)
Q Consensus 1037 ~V~sl~f-spdg~-~Lasgs~-dg~I~VWD~~t-g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-DG~IrIWD~ 1111 (1262)
.+..+.+ ++++. .++..+. ++.+.+||... ......+..|. ..|.+++|+ +++..+++++. |+.+++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS---ESVTSLAFS--PDGKLLASGSSLDGTIKLWDL 185 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc---ccEEEEEEC--CCCCEEEecCCCCCceEEEEc
Confidence 4556666 77777 5555444 89999999998 78888888898 899999997 77778888886 999999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeE-eecCCCCCCeeEEEEEc
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~-ti~~hs~~~VtsLa~~s 1189 (1262)
.. +.. ...+.+|...+.+ ++|++++..++++ +.|+.|++||...+. .+. .+..|... + +..+.
T Consensus 186 ~~--~~~-----~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~--~~~~~ 250 (466)
T COG2319 186 RT--GKP-----LSTLAGHTDPVSS----LAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDS-V--VSSFS 250 (466)
T ss_pred CC--Cce-----EEeeccCCCceEE----EEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcc-e--eEeEC
Confidence 75 222 2456668888888 8999888745555 889999999999777 777 68888775 3 32678
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+++..+++++.|+.+++||.+......... .+|...|.++.|.|+ +..+++++.+ .+.+||+.
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPD--GKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCC--CCEEEEeeCCCcEEEEEcC
Confidence 888899999999999999999766422222 567899999999997 6677776644 78999875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=123.46 Aligned_cols=210 Identities=18% Similarity=0.186 Sum_probs=142.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|+++.|..++. |++|+..|.|++|++.+...+..+..+. +..|+.+.-. + +..+.+-+.|+.+.+|++.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~--p-~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSI--P-NDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhc--cceeeceeec--C-CcchhhcCCCceEEEEEcc
Confidence 5677899999988776 9999999999999999998888888443 2678888875 3 3678888999999999985
Q ss_pred CCC----------------------Ccc---eEEeee-----------------eeccCCCCcccccceeEEEcCCCC--
Q 000836 1113 DQK----------------------DKQ---KLVTAF-----------------SSIQGHKPGVRCSNVVVDWQQQSG-- 1148 (1262)
Q Consensus 1113 ~~~----------------------g~~---~lvsa~-----------------~~l~~h~~~V~sv~l~v~wsp~~~-- 1148 (1262)
.+. .+. .+...- +...+....-.+..++..|.-..+
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 300 000 000000 000000000111223344433222
Q ss_pred -EEEEEeCCCeEEEEeCCCCceeeEeec----------CCCCC-------------------------------------
Q 000836 1149 -YLYASGEVSSIMLWDLEKEQQMVNPIP----------SSSDC------------------------------------- 1180 (1262)
Q Consensus 1149 -~Llsgg~Dg~IrIWDlrs~~~~v~ti~----------~hs~~------------------------------------- 1180 (1262)
.+++|-.+|.|.+||+.++. .+-.++ .|...
T Consensus 166 ~lllaGyEsghvv~wd~S~~~-~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGD-KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEEEeccCCeEEEEEccCCc-eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 45566779999999999863 111111 11110
Q ss_pred --------CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ce
Q 000836 1181 --------SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LP 1251 (1262)
Q Consensus 1181 --------~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I 1251 (1262)
.|..+ ...+++++++|++.||.||||..|+... .. .+.-|++.|++++|+|+ ...++++|.| .|
T Consensus 245 ~e~~lknpGv~gv-rIRpD~KIlATAGWD~RiRVyswrtl~p-LA---VLkyHsagvn~vAfspd--~~lmAaaskD~rI 317 (323)
T KOG0322|consen 245 KEITLKNPGVSGV-RIRPDGKILATAGWDHRIRVYSWRTLNP-LA---VLKYHSAGVNAVAFSPD--CELMAAASKDARI 317 (323)
T ss_pred ceEEecCCCccce-EEccCCcEEeecccCCcEEEEEeccCCc-hh---hhhhhhcceeEEEeCCC--CchhhhccCCceE
Confidence 13444 5578899999999999999999998873 32 34457799999999999 8899999977 99
Q ss_pred EEEec
Q 000836 1252 SFSDL 1256 (1262)
Q Consensus 1252 ~~WDL 1256 (1262)
.+|+|
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99997
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=124.16 Aligned_cols=205 Identities=15% Similarity=0.202 Sum_probs=154.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
..+|+|.+|++++..+|++-.+..|.||..... +..++++.|. ..|+.++|. +..+.|++|+.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdWa--p~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDWA--PKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---cceeEEeec--CCCCceeEccCCCCcccccc
Confidence 367999999999999999999999999998765 4678888898 899999997 88899999999999999998
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEeecCCCCCCeeEEEEEc
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~--~v~ti~~hs~~~VtsLa~~s 1189 (1262)
.. +++.+.. -.+..++...++ +.|+|.++.+++||..+.|.||-.+.+.. .-+.+.-.-.+.|+++ .|+
T Consensus 85 ~~-~~~Wkpt---lvLlRiNrAAt~----V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dWh 155 (361)
T KOG1523|consen 85 PS-GGTWKPT---LVLLRINRAATC----VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DWH 155 (361)
T ss_pred CC-CCeeccc---eeEEEeccceee----EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-ecc
Confidence 54 2332211 124456666777 99999999999999999999999888762 1222322222239999 889
Q ss_pred CCCCEEEEEECCCcEEEEECC-----CCCc--------e-eeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEE
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVR-----TPDM--------L-VCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFS 1254 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlr-----s~~~--------~-v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~W 1254 (1262)
+++-++++|+.|+.+|||..- ..+. + -..+..+....++|..+.|+|. |..|+=.+ +..+.+-
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSFV 233 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEEe
Confidence 999999999999999999542 1110 0 0111122234689999999999 77887666 4466655
Q ss_pred e
Q 000836 1255 D 1255 (1262)
Q Consensus 1255 D 1255 (1262)
|
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 4
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=136.21 Aligned_cols=212 Identities=16% Similarity=0.184 Sum_probs=150.7
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE--EEEe----eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL--LNSF----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1036 ~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~--l~~~----~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
..|.|++|+|..+ +++.|..+|.|.+||+..+.. ...+ ..|. ..|+.+.|.+...+.-++++|.||.|..
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~---~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS---EPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC---cCeEEEEEeccCCCCceEEEecCCcEee
Confidence 5799999999655 677788999999999987654 2222 2344 7899999985555567999999999999
Q ss_pred EEcCCCCC------------------cceEEeee--------------------------------------eeccCCCC
Q 000836 1109 WKDYDQKD------------------KQKLVTAF--------------------------------------SSIQGHKP 1132 (1262)
Q Consensus 1109 WD~~~~~g------------------~~~lvsa~--------------------------------------~~l~~h~~ 1132 (1262)
|+++.-.. +...++.. .....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98863100 00000000 01112334
Q ss_pred cccccceeEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000836 1133 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1133 ~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlr-s~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs 1211 (1262)
.|+. +.++|-+..++.++.|..|+||.-. ... ++..+..+.+. |++++|......+|+++..||.+.|||+..
T Consensus 400 ~v~~----v~~nPF~~k~fls~gDW~vriWs~~~~~~-Pl~~~~~~~~~-v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 400 PVYA----VSRNPFYPKNFLSVGDWTVRIWSEDVIAS-PLLSLDSSPDY-VTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ceEe----eecCCCccceeeeeccceeEeccccCCCC-cchhhhhccce-eeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 4454 8888888877777669999999988 666 88888888776 999955555667999999999999999986
Q ss_pred CCc-eeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccccc
Q 000836 1212 PDM-LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYFLA 1261 (1262)
Q Consensus 1212 ~~~-~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryfla 1261 (1262)
... ++.. ..-+....+.+.|++. |+.|+.|..+ .+.++++.-.++
T Consensus 474 ~~~~Pv~s---~~~~~~~l~~~~~s~~--g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 474 DDEEPVLS---QKVCSPALTRVRWSPN--GKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred cccCCccc---ccccccccceeecCCC--CcEEEEecCCCcEEEEEcCchhh
Confidence 542 2222 2222566788889988 8999999965 999999965443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-11 Score=135.80 Aligned_cols=196 Identities=13% Similarity=0.168 Sum_probs=162.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
..++..+.++.+|.+++.|+..|.|.-+||.++++...+.... .|.++.|. .+..+++++ ....+.|||..-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~L--Hneq~~AVA-QK~y~yvYD~~G- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFL--HNEQFFAVA-QKKYVYVYDNNG- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhh--cchHHHHhh-hhceEEEecCCC-
Confidence 3568889999999999999999999999999999888776554 78999997 555666665 566899999853
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1194 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~l 1194 (1262)
. + +..++.|. .|.. +.|-|..-.|++++..|.++.-|+.+++ .+..+.+..+. +..| ...|...+
T Consensus 201 --t-E----lHClk~~~-~v~r----LeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~-~~vm-~qNP~NaV 265 (545)
T KOG1272|consen 201 --T-E----LHCLKRHI-RVAR----LEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGR-TDVM-KQNPYNAV 265 (545)
T ss_pred --c-E----EeehhhcC-chhh----hcccchhheeeecccCCceEEEeechhh-hhHHHHccCCc-cchh-hcCCccce
Confidence 2 2 24556554 3555 7888877777777999999999999999 99999998886 7777 77888889
Q ss_pred EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1195 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1195 LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
+-+|...|+|.+|...+.+.++..+ .|.++|.+|++.++ |++++|++-| .+++||+|.|
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiL----cH~g~V~siAv~~~--G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKIL----CHRGPVSSIAVDRG--GRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHH----hcCCCcceEEECCC--CcEEeecccccceeEeeeccc
Confidence 9999999999999998888666443 56799999999999 9999999966 9999999976
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-10 Score=133.86 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=157.9
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1038 TKTALLQP--FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fsp--dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
|+++ +|| +-+.++.|+.+|.+.+|++++++.+.+|+.+. ..||++.-+ +.-..++.|..+|+|.|++++.
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ieqs--PaLDVVaiG~~~G~ViifNlK~-- 233 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF---SRITAIEQS--PALDVVAIGLENGTVIIFNLKF-- 233 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc---cceeEeccC--CcceEEEEeccCceEEEEEccc--
Confidence 5554 466 44678999999999999999999999999998 899999886 7778999999999999999987
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEEEcCCCC
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~~s~~g~ 1193 (1262)
++. + ..++...+.|++ +.|..||..++++| ..|.+-+||++..+ .+..+. .|.++ |+.. .+.+..+
T Consensus 234 dki--l---~sFk~d~g~Vts----lSFrtDG~p~las~~~~G~m~~wDLe~kk-l~~v~~nah~~s-v~~~-~fl~~ep 301 (910)
T KOG1539|consen 234 DKI--L---MSFKQDWGRVTS----LSFRTDGNPLLASGRSNGDMAFWDLEKKK-LINVTRNAHYGS-VTGA-TFLPGEP 301 (910)
T ss_pred CcE--E---EEEEccccceeE----EEeccCCCeeEEeccCCceEEEEEcCCCe-eeeeeeccccCC-cccc-eecCCCc
Confidence 332 2 334433577888 89998888776665 56999999999988 666665 67666 8888 6778889
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEe
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WD 1255 (1262)
++++.+.|.++++|=..+++-..+.++.-.||..+..++.|.-. .|..+.+++.| ..+.++
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~-~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS-QGHFILSAKQDRTLRSFS 363 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc-CcEEEEecccCcchhhhh
Confidence 99999999999999777666445566667799999999999855 58899999977 444333
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-11 Score=143.75 Aligned_cols=196 Identities=18% Similarity=0.334 Sum_probs=142.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|-+.|.|+.|...|.++++|++|..++||..+++.++.+..+|. +.|++++.+ ....+++++|.|..|++|.+..
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs---~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS---GDITDLAVS--SNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc---cccchhccc--hhhhhhhhcccCceEEEEecCC
Confidence 44679999999999999999999999999999999999999999 999999996 6778899999999999999976
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec----CCCCCCeeEEEEEc
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP----SSSDCSISALTASQ 1189 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~----~hs~~~VtsLa~~s 1189 (1262)
+.+ ...+.+|++.|++ ++|+|.. ++++||++++||.+-.- +...+ ...+.-+.++ .+.
T Consensus 264 --~~p-----vsvLrghtgavta----iafsP~~----sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~-~~~ 325 (1113)
T KOG0644|consen 264 --GAP-----VSVLRGHTGAVTA----IAFSPRA----SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSI-LFE 325 (1113)
T ss_pred --Cch-----HHHHhccccceee----eccCccc----cCCCCCceEeccccccc--cccCCCCCCcccccceeee-ecc
Confidence 433 2568999999999 9999965 67899999999998221 11110 0000112222 233
Q ss_pred CCCCEEEEEECCCc-------------------------------------EEEEECCCCCceeeeecCCCCCCCCeEEE
Q 000836 1190 VHGGQLAAGFVDGS-------------------------------------VRLYDVRTPDMLVCSTRPHTQQVERVVGI 1232 (1262)
Q Consensus 1190 ~~g~lLatGs~DGs-------------------------------------VrIWDlrs~~~~v~~~~~~~gH~~~V~sl 1232 (1262)
.++.-++||+.|+. +.+|++-++. +. ....+|...+..+
T Consensus 326 ~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~---H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 326 NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LL---HNLMGHSDEVYVL 401 (1113)
T ss_pred ccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-hh---hhhcccccceeee
Confidence 33333444444433 3444444443 11 1334688899999
Q ss_pred EEecCCCCCEEEEec-CCceEEEecc
Q 000836 1233 SFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1233 afsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
.+||- +.+...+++ ++...+||..
T Consensus 402 d~Hpf-n~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 402 DVHPF-NPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eecCC-CcHhhhhccCCCceEeeecc
Confidence 99998 666667777 5588899974
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=118.35 Aligned_cols=167 Identities=17% Similarity=0.311 Sum_probs=125.1
Q ss_pred CCCCeEEEEEc-C-CCCEEEEEeCCCcEEEEECCC------C---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC
Q 000836 1034 FEKGTKTALLQ-P-FSPIVVAADENERIKIWNYEE------D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1262)
Q Consensus 1034 ~~~~V~sl~fs-p-dg~~Lasgs~dg~I~VWD~~t------g---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~ 1102 (1262)
|++.|..+.|- | +|+.+|+++.|+++.||.-.. + ....++.... +.|++++|.+..-|-.+++++.
T Consensus 58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr---ssV~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR---SSVTDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC---cceeEEEecchhcceEEEEecc
Confidence 67889999994 4 899999999999999998621 1 2344555555 8999999986667889999999
Q ss_pred CCeEEEEEcCCC------------------CCcce-----------------E-------------------------Ee
Q 000836 1103 NGNIRIWKDYDQ------------------KDKQK-----------------L-------------------------VT 1122 (1262)
Q Consensus 1103 DG~IrIWD~~~~------------------~g~~~-----------------l-------------------------vs 1122 (1262)
||.+|||+.-.. .++.+ + ..
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~ 214 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL 214 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee
Confidence 999999986420 00000 0 00
Q ss_pred eeeeccCCCCcccccceeEEEcCCCC----EEEEEeCCCeEEEEeCCCCc-------------------eeeEeecCCCC
Q 000836 1123 AFSSIQGHKPGVRCSNVVVDWQQQSG----YLYASGEVSSIMLWDLEKEQ-------------------QMVNPIPSSSD 1179 (1262)
Q Consensus 1123 a~~~l~~h~~~V~sv~l~v~wsp~~~----~Llsgg~Dg~IrIWDlrs~~-------------------~~v~ti~~hs~ 1179 (1262)
....+.+|...|+. ++|.|.-+ .|++++.|| |+||.++... +.+..+..|.+
T Consensus 215 kva~L~d~~dpI~d----i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~ 289 (361)
T KOG2445|consen 215 KVAELPDHTDPIRD----ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG 289 (361)
T ss_pred eehhcCCCCCccee----eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC
Confidence 01234567788888 99999655 577778999 9999987411 24555677877
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
. |..+ .|...|.+|++.+.||.||+|...
T Consensus 290 ~-VWrv-~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 290 E-VWRV-RWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-eEEE-EEeeeeeEEeecCCCceeeehhhh
Confidence 6 9999 889999999999999999999764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-10 Score=120.67 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=121.5
Q ss_pred eEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEE
Q 000836 1083 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1083 ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW 1162 (1262)
-.++.|+ .-|.+|++|+.||.|-|||..+ ... -+.+.+|..+|.+ ++|+++|..|++++.|..|++|
T Consensus 26 a~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T--~~i-----ar~lsaH~~pi~s----l~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFS--RWGDYLAVGCANGRVVIYDFDT--FRI-----ARMLSAHVRPITS----LCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEec--cCcceeeeeccCCcEEEEEccc--cch-----hhhhhccccceeE----EEecCCCCEeeeecCCceeEEE
Confidence 5789997 8999999999999999999977 222 2678899999999 9999999999999999999999
Q ss_pred eCCCCceeeEeecCCCC-----------------------------------------CCeeEEE---EEcCCCCEEEEE
Q 000836 1163 DLEKEQQMVNPIPSSSD-----------------------------------------CSISALT---ASQVHGGQLAAG 1198 (1262)
Q Consensus 1163 Dlrs~~~~v~ti~~hs~-----------------------------------------~~VtsLa---~~s~~g~lLatG 1198 (1262)
|+..+. +++.+.-.+. ......+ .++..|+++++|
T Consensus 93 Dl~~gs-~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 93 DLLKGS-PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred eccCCC-ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 999887 6555431100 0000011 366789999999
Q ss_pred ECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1199 s~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
...|.+.++|..+.+ ++..++.-. ...|..+.++.. |+.|+..+.| .|+.+++.
T Consensus 172 tsKGkllv~~a~t~e-~vas~rits--~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLE-CVASFRITS--VQAIKQIIVSRK--GRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cCcceEEEEecchhe-eeeeeeech--heeeeEEEEecc--CcEEEEecCCceEEEEehh
Confidence 999999999999887 444432221 267899999998 8888888866 88988876
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=116.75 Aligned_cols=206 Identities=24% Similarity=0.435 Sum_probs=156.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEeecCCCc-EEEEEeC-CCeEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASC-NGNIRI 1108 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~-~l~~~~~h~~~~~~ItsL~fsn~~dg~-lLaTgS~-DG~IrI 1108 (1262)
..+...+.++.|.+.+..++.++.++.+.+|+...+. .+..+..... ..+..+.+. ..++. .++..+. |+.+++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALS-SPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence 3556789999999999999999999999999999886 6677766441 367777773 36666 5555444 999999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
|+... . ... ...+..|...+.. +.|++++..+++++. ++.+++|++.... .+..+..|... |.++ .
T Consensus 139 ~~~~~-~--~~~---~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~-~ 205 (466)
T COG2319 139 WDLST-P--GKL---IRTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP-VSSL-A 205 (466)
T ss_pred EEecC-C--CeE---EEEEecCcccEEE----EEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCc-eEEE-E
Confidence 99964 0 111 2456778888887 999999988888875 9999999999988 88889888876 9999 6
Q ss_pred EcCCCC-EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccc
Q 000836 1188 SQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1188 ~s~~g~-lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryf 1259 (1262)
+.+++. ++++++.|+.|++||.+.+. .... ...+|...+ ...|+++ +..+++++.+ .+++||++..
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGK-LLRS--TLSGHSDSV-VSSFSPD--GSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCc-EEee--ecCCCCcce-eEeECCC--CCEEEEecCCCcEEEeeecCC
Confidence 668887 55555999999999988555 3321 234555554 3389999 6777777755 9999998754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=125.24 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=149.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~-l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
....+.|+.+...++.|+.=|...+||..++.. ...+.-|. ..|++|++ |+....+|+|||.|++++|||++...
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~-NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK---KKITSVAL-NPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh---cccceeec-CCCCchheeecccCcceeeeehhhhc
Confidence 366788998888888888888999999998654 55666777 79999999 47788899999999999999998755
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCC----CCceeeEeecCCCCC--CeeEE-EEE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE----KEQQMVNPIPSSSDC--SISAL-TAS 1188 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlr----s~~~~v~ti~~hs~~--~VtsL-a~~ 1188 (1262)
++.. ++-....|...|.+ ..|+|.++.|++.+.|..|||||.. ... +..+|...... .++-+ +.|
T Consensus 357 ~K~s---p~lst~~HrrsV~s----AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 357 GKAS---PFLSTLPHRRSVNS----AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTGRWLTPFKAAW 428 (498)
T ss_pred CCCC---cceecccccceeee----eEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCcccccccchhhee
Confidence 5442 11234578888988 8999999999999999999999983 334 55666543221 12222 257
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE-EEEecCCCCCEEEEecCC--ceEEE
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG-ISFQPGLDPAKVNGTPKC--LPSFS 1254 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s-lafsp~~~g~~LaSgSdd--~I~~W 1254 (1262)
.|+.++|++|-.-..|-|||-..++ +++.+ +..-...|.+ .+|||- +..+++|+.. .|.+|
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~q-~v~el--~~P~~~tI~~vn~~HP~--~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGGQ-MVCEL--HDPESSTIPSVNEFHPM--RDTLAAGGNSSGKIYVF 492 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCCE-Eeeec--cCccccccccceeeccc--ccceeccCCccceEEEE
Confidence 8899999999999999999997766 44443 2111233443 579999 7777887754 55544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-10 Score=130.51 Aligned_cols=200 Identities=12% Similarity=0.146 Sum_probs=155.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~---dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.|...|..|.||-.|.||++... ...|.|+++...+...-|.-.. +.|.++.|. +...+|++++ ...||||
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FH--Ps~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFH--PSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC---CceeEEEec--CCCceEEEEe-ccceEEE
Confidence 46678999999999999998543 4579999998776666665555 789999995 6677777776 4589999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEc
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s 1189 (1262)
|+.. .+++ +.+.....+|.+ ++.++.|..|++|+.|+.+..+|+....++.+++..|... ++++ +++
T Consensus 593 dL~k----qelv---KkL~tg~kwiS~----msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-vr~V-a~H 659 (733)
T KOG0650|consen 593 DLSK----QELV---KKLLTGSKWISS----MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-VRSV-AFH 659 (733)
T ss_pred ehhH----HHHH---HHHhcCCeeeee----eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-hhhh-hhc
Confidence 9954 3344 334444455666 8889999999999999999999998876588889999887 9999 889
Q ss_pred CCCCEEEEEECCCcEEEEECC------CCCceeeeecCCCCCCCC----eEEEEEecCCCCCEEEEecCC-ceEEE
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVR------TPDMLVCSTRPHTQQVER----VVGISFQPGLDPAKVNGTPKC-LPSFS 1254 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlr------s~~~~v~~~~~~~gH~~~----V~slafsp~~~g~~LaSgSdd-~I~~W 1254 (1262)
..-++|++|+.||++.||--+ ....++ -.+.+.+|... |..+.|||. ..+|.|++.+ .|++|
T Consensus 660 ~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV-PlK~L~gH~~~~~~gVLd~~wHP~--qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 660 KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV-PLKRLRGHEKTNDLGVLDTIWHPR--QPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceeeeecCCCcEEEEeeeeehhhhcCCceE-eeeeccCceeecccceEeecccCC--CceEEecCCCceEEee
Confidence 899999999999999998543 222222 22345566544 899999999 8888888855 99987
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=135.68 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=132.7
Q ss_pred EECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeE
Q 000836 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1141 (1262)
Q Consensus 1062 WD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v 1141 (1262)
|+.+ |..+..+..|. ..|..++.+ .+++.+|+|||.||+||+|+.+...++.....+-.++.-....+.. +
T Consensus 1034 W~p~-G~lVAhL~Ehs---~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~----v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS---SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK----V 1104 (1431)
T ss_pred CCcc-ceEeehhhhcc---ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE----E
Confidence 7776 88888898898 778888886 6777999999999999999998644432222121223223344554 5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCc------eeeEeecCCCCCCeeEEEEEcC-CC-CEEEEEECCCcEEEEECCCCC
Q 000836 1142 DWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPIPSSSDCSISALTASQV-HG-GQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1142 ~wsp~~~~Llsgg~Dg~IrIWDlrs~~------~~v~ti~~hs~~~VtsLa~~s~-~g-~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
...+.+..+++++.||.|++.+++... .+......+..+++.+|..+.. .+ ..++.+..-+.|..||+|+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 555778899999999999999988722 1333444555555777644332 23 378888999999999999876
Q ss_pred ceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecccc
Q 000836 1214 MLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIYF 1259 (1262)
Q Consensus 1214 ~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLryf 1259 (1262)
... .. .+....+.|++++.+|. +.++++|+ .|.+.+||+||-
T Consensus 1185 ~~w-~l-k~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1185 DAW-RL-KNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hHH-hh-hcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecC
Confidence 332 22 23333578999999999 88999998 559999999984
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=123.82 Aligned_cols=176 Identities=13% Similarity=0.196 Sum_probs=128.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCC--CCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCC------
Q 000836 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD------ 1116 (1262)
Q Consensus 1045 pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~--~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g------ 1116 (1262)
+.+--+.+|-..|.|.+.|....+ +..+-+.. .....|++++|. +.+..+++++..+|.+.+||.....+
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWv-pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWV-PGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEE-eCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345567778778889988876532 22111110 112689999998 56778889999999999998642100
Q ss_pred -------cceE-----------EeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCC
Q 000836 1117 -------KQKL-----------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178 (1262)
Q Consensus 1117 -------~~~l-----------vsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs 1178 (1262)
...+ +..|.. -...|+. .+|+++|.+|++.+.||.+||+|..+.+ .+..+..--
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~----f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYF 332 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINE----FAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYF 332 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEe---ccccccc----eeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhc
Confidence 0111 101111 1235666 8899999999999999999999999988 777776666
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEec
Q 000836 1179 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236 (1262)
Q Consensus 1179 ~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp 1236 (1262)
++ ..|+ +|+|||++|++|+.|.-|.||.+...+ .+. --+||++||..|+|.|
T Consensus 333 GG-LLCv-cWSPDGKyIvtGGEDDLVtVwSf~erR-VVA---RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GG-LLCV-CWSPDGKYIVTGGEDDLVTVWSFEERR-VVA---RGQGHKSWVSVVAFDP 384 (636)
T ss_pred cc-eEEE-EEcCCccEEEecCCcceEEEEEeccce-EEE---eccccccceeeEeecc
Confidence 66 9999 999999999999999999999998666 332 2348999999999993
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=119.76 Aligned_cols=148 Identities=19% Similarity=0.313 Sum_probs=109.6
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC--CCCEEEEEeCCCeEEEEeCCCCce-ee
Q 000836 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QSGYLYASGEVSSIMLWDLEKEQQ-MV 1171 (1262)
Q Consensus 1095 ~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp--~~~~Llsgg~Dg~IrIWDlrs~~~-~v 1171 (1262)
..++++.+.|.|++||..+ ++. .+.++++...++. +.|.. ....+++++.||+||+||+|...+ ..
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~-----l~~fk~~~~~~N~----vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQL-----LEEFKGPPATTNG----VRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhh-----hheecCCCCcccc----eEEecCCCCCeeEEeccCCeEEEEEeecchhhhh
Confidence 6788999999999999976 322 2456667777776 55544 355788889999999999998761 33
Q ss_pred EeecCCCCCCeeEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1172 NPIPSSSDCSISALTASQVHGGQLAAGFV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1172 ~ti~~hs~~~VtsLa~~s~~g~lLatGs~----DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
.....+.+.+..|+ ...-.++++++|.. |-.|.+||+|..+.+++.+ ...|...|+++.|+|. +..+|+|||
T Consensus 110 ~~~~~~~~~~f~~l-d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--~eSH~DDVT~lrFHP~-~pnlLlSGS 185 (376)
T KOG1188|consen 110 ISWTQQSGTPFICL-DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--NESHNDDVTQLRFHPS-DPNLLLSGS 185 (376)
T ss_pred eeccCCCCCcceEe-eccCcCCeEEeccccccCceEEEEEEeccccchhhhh--hhhccCcceeEEecCC-CCCeEEeec
Confidence 33444443345666 33446778888864 6789999999988655443 3467899999999999 889999999
Q ss_pred -CCceEEEecc
Q 000836 1248 -KCLPSFSDLI 1257 (1262)
Q Consensus 1248 -dd~I~~WDLr 1257 (1262)
|+.+.++|+.
T Consensus 186 vDGLvnlfD~~ 196 (376)
T KOG1188|consen 186 VDGLVNLFDTK 196 (376)
T ss_pred ccceEEeeecC
Confidence 5599999874
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=110.32 Aligned_cols=196 Identities=19% Similarity=0.222 Sum_probs=137.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1036 KGTKTALLQPFSPIVVAADE--NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~--dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
..|-.+-|+.. ++|..+. ...++|++.+.+..++.+.-. ..|.++.+. .+.|+++-.+ .|.|||+++
T Consensus 47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmN----r~RLvV~Lee-~IyIydI~~ 115 (391)
T KOG2110|consen 47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP----TSILAVRMN----RKRLVVCLEE-SIYIYDIKD 115 (391)
T ss_pred eEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC----CceEEEEEc----cceEEEEEcc-cEEEEeccc
Confidence 34666677644 4544443 345999999988877766433 479999983 3455555544 499999976
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg--~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
.++...+.....+...+.. +..+..+.+++.-+ ..|.|.+||+.+-+ .+..|.+|.+. +.++ +++++
T Consensus 116 ----MklLhTI~t~~~n~~gl~A----lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~-lAal-afs~~ 184 (391)
T KOG2110|consen 116 ----MKLLHTIETTPPNPKGLCA----LSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGP-LAAL-AFSPD 184 (391)
T ss_pred ----ceeehhhhccCCCccceEe----eccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCc-eeEE-EECCC
Confidence 3444333333333333332 33344444666553 36999999999999 99999999997 9999 89999
Q ss_pred CCEEEEEECCCc-EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1192 GGQLAAGFVDGS-VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGs-VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
|.++||++..|+ ||||.+..++......+... -..|.+++|+|+ +++|++.|+. +|.++.|-
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~d--s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPD--SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCC--CCeEEEecCCCeEEEEEec
Confidence 999999999997 59999998884432222221 356899999999 8888777744 88888763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-09 Score=114.95 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=124.4
Q ss_pred CCeEEEEEee---cCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeecc--CCCCcccccceeEEEcCC----CCEEE
Q 000836 1081 KGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ--GHKPGVRCSNVVVDWQQQ----SGYLY 1151 (1262)
Q Consensus 1081 ~~ItsL~fsn---~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~--~h~~~V~sv~l~v~wsp~----~~~Ll 1151 (1262)
..|..++|.. ..+...++|.+ ...+.+|.... ++...++ +... +|...-.. ++|.-+ +..++
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~-d~~ir~l---q~y~D~d~~Esfyt----csw~yd~~~~~p~la 109 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPG-DGGIRLL---QSYADEDHDESFYT----CSWSYDSNTGNPFLA 109 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeC-CcEEEEEEECC-ccceeee---eeccCCCCCcceEE----EEEEecCCCCCeeEE
Confidence 6788888830 12234555555 44788888765 3333333 2222 23333333 666532 44788
Q ss_pred EEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE
Q 000836 1152 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1152 sgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s 1231 (1262)
+||.-|.|||.|+.+++ +...+.+|..+ |+.|...+.+.+++++|+.|.+||+|++++.. ++..+....||...|.+
T Consensus 110 ~~G~~GvIrVid~~~~~-~~~~~~ghG~s-INeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQ-CSKNYRGHGGS-INEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eecceeEEEEEecchhh-hccceeccCcc-chhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCcEEE
Confidence 88999999999999999 99999999997 99995555566799999999999999999887 77888889999999999
Q ss_pred EEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1232 ISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+.|+++ |..++|++-| .+++|++.
T Consensus 187 vD~~~~--gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 187 VDFSLD--GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEcCC--CCeeeccCCcceEEEEecC
Confidence 999999 8899999966 99999986
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-09 Score=122.93 Aligned_cols=214 Identities=13% Similarity=0.131 Sum_probs=159.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~-tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.|-..|+.++|+|.|.+|++.+.|.+-|++--- ....-+.+.-...+|-.++|+++.| ....+++|.....+|+|+.
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn--~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN--EDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc--CCceeeecccceeeeeecC
Confidence 466789999999999999999999999998654 1122222222222337899999983 2567888888899999986
Q ss_pred CC----------C---C----------------------------Ccce---EEee------------------------
Q 000836 1112 YD----------Q---K----------------------------DKQK---LVTA------------------------ 1123 (1262)
Q Consensus 1112 ~~----------~---~----------------------------g~~~---lvsa------------------------ 1123 (1262)
.. + . |... .-++
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 41 0 0 0000 0000
Q ss_pred -eeeccCCCCcccccceeEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEE
Q 000836 1124 -FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1197 (1262)
Q Consensus 1124 -~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-----Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLat 1197 (1262)
.+.+.||...|.+ ++.+|+++.+++++. -..|++|+..+.. .++.+..|+-. |+.| .|+++|++|++
T Consensus 517 Ev~KLYGHGyEv~~----l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~-~~~~L~~HsLT-VT~l-~FSpdg~~LLs 589 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYA----LAISPTGNLIASACKSSLKEHAVIRLWNTANWL-QVQELEGHSLT-VTRL-AFSPDGRYLLS 589 (764)
T ss_pred hhHHhccCceeEEE----EEecCCCCEEeehhhhCCccceEEEEEeccchh-hhheecccceE-EEEE-EECCCCcEEEE
Confidence 1233456667777 888999999988854 3469999999998 88899999987 9999 99999999999
Q ss_pred EECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1198 Gs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.+.|.++.+|........-..+...+.|+.-|.+..|+|+ +.+++|+|.| .+++|...
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd--e~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD--EKYFATASRDKKVKVWEEP 648 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcc--cceeEEecCCceEEEEecc
Confidence 9999999999986544222233345678889999999999 8889999977 99999763
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-09 Score=116.96 Aligned_cols=209 Identities=12% Similarity=0.144 Sum_probs=144.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg------~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
.|.+.|.++.|+.++++||+|++|..++||+++.. +.+.....|. .+.|.|++|. ....++.+|..+|+|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H--~SNIF~L~F~--~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH--RSNIFSLEFD--LENRFLYSGERWGTV 129 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc--ccceEEEEEc--cCCeeEecCCCccee
Confidence 45678999999999999999999999999998742 3333332222 3789999995 667899999999999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-ecCCCCCCeeEE
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISAL 1185 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t-i~~hs~~~VtsL 1185 (1262)
...|+.+ .+..-| ..-....+.|.. +.-+|..+.+++.+.+|.|.+||.+...+.+.- +.+.......++
T Consensus 130 I~HDiEt--~qsi~V---~~~~~~~~~VY~----m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 130 IKHDIET--KQSIYV---ANENNNRGDVYH----MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTA 200 (609)
T ss_pred Eeeeccc--ceeeee---ecccCcccceee----cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceee
Confidence 9999987 222111 111223346777 777899999999999999999999876522222 233333335555
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecC---CCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---HTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~---~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
.+.+....+|++.+..|-+.+||+|.....+..+.. +........++.|+|. |..|++--.+ ...++|+
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~--G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS--GNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC--CCeehhhhccCCCEEeee
Confidence 244456678999999999999999987644332222 2211223467889999 6666665544 4555654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=121.36 Aligned_cols=163 Identities=17% Similarity=0.308 Sum_probs=128.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
.+.|..+.|+.+++.|++++.+|.|.|||++...++++|.... +-.-++++.+ .++.+|++||..|.|.|||..+.
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G--~v~gts~~~S--~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG--SVHGTSLCIS--LNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC--ccceeeeeec--CCCceEEeccCcceEEEeccchh
Confidence 3678999999999999998889999999999999999997654 1233556665 88999999999999999997541
Q ss_pred --CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeEeecCCCCC--CeeEEEEE
Q 000836 1115 --KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSSIMLWDLEKEQQMVNPIPSSSDC--SISALTAS 1188 (1262)
Q Consensus 1115 --~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~--Dg~IrIWDlrs~~~~v~ti~~hs~~--~VtsLa~~ 1188 (1262)
...++.+ .++......|++ +.|+++...|+.+|. ...+|+-.+.+.. ....++..... -|+|| .|
T Consensus 420 ~~s~~PkPi---k~~dNLtt~Its----l~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~-aF 490 (514)
T KOG2055|consen 420 FASTNPKPI---KTVDNLTTAITS----LQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCM-AF 490 (514)
T ss_pred hccCCCCch---hhhhhhheeeee----eeeCcchhhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEE-Ee
Confidence 1223222 444555566777 999999998888754 6779998888877 66666654322 48999 89
Q ss_pred cCCCCEEEEEECCCcEEEEECC
Q 000836 1189 QVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
+|+|.+++.|..+|.|.+|.+.
T Consensus 491 SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCceEEeecCCCceeeEeec
Confidence 9999999999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=134.36 Aligned_cols=240 Identities=15% Similarity=0.084 Sum_probs=188.8
Q ss_pred cccchhHHHhccch---hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchh---------HHHHHHHHHHHH
Q 000836 461 EQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPE---------LRQILVFIWTKI 528 (1262)
Q Consensus 461 ~~lPiVLqvLlS~~---~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~e---------lr~~lvFIwa~i 528 (1262)
|-.|.++++|.+.. -|..|.+.|.+...-++-.+...++.|+.|.++++++++..| ++..+++.++.|
T Consensus 231 GaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI 310 (2102)
T PLN03200 231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI 310 (2102)
T ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH
Confidence 67899999886633 389999999999888899999999999999999999976643 578899999999
Q ss_pred hccChh-----------hh-----hhh--------------------hccccH-HHHHH---------------------
Q 000836 529 LALDKS-----------CQ-----VDL--------------------VKDGGH-AYFIR--------------------- 550 (1262)
Q Consensus 529 l~~d~~-----------~Q-----~dl--------------------~k~~~~-~yf~~--------------------- 550 (1262)
|++-+. ++ .|. +.++.. ..+++
T Consensus 311 cgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl 390 (2102)
T PLN03200 311 CGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390 (2102)
T ss_pred hCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh
Confidence 986322 10 110 000000 01111
Q ss_pred --------hhcCCC-----------CcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHH
Q 000836 551 --------FLDSME-----------AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611 (1262)
Q Consensus 551 --------~L~~~~-----------~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR 611 (1262)
.|.+.| ...+.+.-+|++|+.++++..+.+.+-.+.|.+..++++|. ++++.+|
T Consensus 391 ~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~-------s~s~~iQ 463 (2102)
T PLN03200 391 YGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG-------LSSEQQQ 463 (2102)
T ss_pred cCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc-------CCCHHHH
Confidence 121111 11477889999999999998888888899999999999999 7889999
Q ss_pred HHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHH-H
Q 000836 612 QWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRA-E 690 (1262)
Q Consensus 612 ~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~-e 690 (1262)
.+++.+|+++-.++++.++..++.++...|..||..+++.+|++++++|+++... ..+.+..+ +
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~---------------~~qir~iV~~ 528 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH---------------SEDIRACVES 528 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---------------cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999731 11112223 4
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 691 ISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 691 ~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.+.+..|+.++.++++.++++++++|..++..
T Consensus 529 aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 529 AGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999988643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=112.91 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=142.6
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1027 ~~~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
...|.+ -.+..++||+.-..++++..|.+|+|||-.. ++...++... ...|++++|- +..+..|+.|+.. -|
T Consensus 93 vt~ws~---~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--QrnvtclawR-PlsaselavgCr~-gI 164 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--QRNVTCLAWR-PLSASELAVGCRA-GI 164 (445)
T ss_pred hhhhhh---cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--hcceeEEEec-cCCcceeeeeecc-ee
Confidence 444554 3578899999888889999999999999886 5555555433 3679999995 5566778888765 58
Q ss_pred EEEEcCCCCCcce----EEee----eeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeEeecCC
Q 000836 1107 RIWKDYDQKDKQK----LVTA----FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSS 1177 (1262)
Q Consensus 1107 rIWD~~~~~g~~~----lvsa----~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~~~v~ti~~h 1177 (1262)
.||..... .... +.++ .-...+| ..|++ +.|+++|..+++++. |..|+|||..++. ++....-.
T Consensus 165 ciW~~s~t-ln~~r~~~~~s~~~~qvl~~pgh-~pVts----mqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~g 237 (445)
T KOG2139|consen 165 CIWSDSRT-LNANRNIRMMSTHHLQVLQDPGH-NPVTS----MQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKG 237 (445)
T ss_pred EEEEcCcc-cccccccccccccchhheeCCCC-ceeeE----EEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccC
Confidence 89987531 1110 0011 0112334 45666 999999999998864 7889999999998 76666444
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1178 s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
-++ ++-+ .|+|+|.+|.++.-|+..++|.....- -...+... .+.|....|+|. |..|+-+..+...++.+
T Consensus 238 lgg-~slL-kwSPdgd~lfaAt~davfrlw~e~q~w-t~erw~lg---sgrvqtacWspc--GsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 238 LGG-FSLL-KWSPDGDVLFAATCDAVFRLWQENQSW-TKERWILG---SGRVQTACWSPC--GSFLLFACSGSPRLYSL 308 (445)
T ss_pred CCc-eeeE-EEcCCCCEEEEecccceeeeehhcccc-eecceecc---CCceeeeeecCC--CCEEEEEEcCCceEEEE
Confidence 444 7777 899999999999999999999554322 11122122 358999999999 66665555443444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-09 Score=122.31 Aligned_cols=177 Identities=21% Similarity=0.334 Sum_probs=134.9
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------cEEEEeeCCCCCCCCeEEEEEeecCCCcE
Q 000836 1027 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----------TLLNSFDNHDFPDKGISKLCLVNELDVSL 1096 (1262)
Q Consensus 1027 ~~~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg----------~~l~~~~~h~~~~~~ItsL~fsn~~dg~l 1096 (1262)
+..|. .|.++|.|++....+.++++|+-||+|+.|++... .....+.+|. +.|+.+.++ .....
T Consensus 337 i~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght---davw~l~~s--~~~~~ 410 (577)
T KOG0642|consen 337 ILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT---DAVWLLALS--STKDR 410 (577)
T ss_pred eEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc---cceeeeeec--ccccc
Confidence 43333 57899999999999999999999999999965421 2345678888 899999997 66677
Q ss_pred EEEEeCCCeEEEEEcCCCCC---------cceE----------------------------EeeeeeccCCC-Ccc---c
Q 000836 1097 LLVASCNGNIRIWKDYDQKD---------KQKL----------------------------VTAFSSIQGHK-PGV---R 1135 (1262)
Q Consensus 1097 LaTgS~DG~IrIWD~~~~~g---------~~~l----------------------------vsa~~~l~~h~-~~V---~ 1135 (1262)
|+++|.||+||.|+...... ...+ ++.++.+.... +.. .
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 99999999999999864111 0000 00001111000 000 1
Q ss_pred ccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 000836 1136 CSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1136 sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
.+.. +.|++..+..+++..|+.|+++|..+++ .++....|..+ ++++ ++.++|.+|++|+.||.|++|.+....
T Consensus 491 ~in~-vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~a~~~s-vtsl-ai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 491 QINK-VVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMVAHKDS-VTSL-AIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccce-EEecCCCCeeEecccCCceecccccccc-cchheeeccce-ecce-eecCCCceEEeecCCceeehhhccchh
Confidence 1223 7788989999999999999999999999 99999999998 9999 889999999999999999999987554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=118.50 Aligned_cols=156 Identities=23% Similarity=0.327 Sum_probs=124.1
Q ss_pred CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcc--eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCe
Q 000836 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ--KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1158 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~--~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~ 1158 (1262)
.+|.++.|. +.+.+.++||+.|..||||.+....... ..+.-...+..|...|+. +.|+++|..+++|+++|.
T Consensus 14 ~pv~s~dfq-~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~----vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 14 EPVYSVDFQ-KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNV----VRFSPDGELLASGGDGGE 88 (434)
T ss_pred CceEEEEec-cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEE----EEEcCCcCeeeecCCCce
Confidence 589999995 4444599999999999999987532211 234444678899999998 999999999999999999
Q ss_pred EEEEeCC--------C------Cce-eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCC
Q 000836 1159 IMLWDLE--------K------EQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1223 (1262)
Q Consensus 1159 IrIWDlr--------s------~~~-~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~ 1223 (1262)
|.+|-.. + +.+ ....+.+|... |..+ +|.++++.+++|+.|.++++||++.+.. .. ...
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-iydL-~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~---~~~ 162 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-IYDL-AWSPDSNFLVSGSVDNSVRLWDVHAGQL-LA---ILD 162 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccc-hhhh-hccCCCceeeeeeccceEEEEEecccee-Ee---ecc
Confidence 9999665 2 112 23345667665 9999 8899999999999999999999998883 32 455
Q ss_pred CCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1224 QQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1224 gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
+|...|..++|.|. ++++++-|.+
T Consensus 163 dh~~yvqgvawDpl--~qyv~s~s~d 186 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPL--NQYVASKSSD 186 (434)
T ss_pred ccccccceeecchh--hhhhhhhccC
Confidence 78899999999999 8888887755
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=117.23 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=140.9
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEE----------------------------EEeeCCCCCC-----
Q 000836 1035 EKGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLL----------------------------NSFDNHDFPD----- 1080 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~L-asgs~dg~I~VWD~~tg~~l----------------------------~~~~~h~~~~----- 1080 (1262)
....+.|..+|||+|+ ++|...-.|+|||+.+..+. +++.-|...|
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~ 130 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT 130 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence 4556788999999965 56778999999999753110 0111121100
Q ss_pred ---CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCC
Q 000836 1081 ---KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157 (1262)
Q Consensus 1081 ---~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg 1157 (1262)
..-.+++++ .+...++++|+.+ .|.-+++.. |.. . +.+....+.++. +..++..+.|++|+.+|
T Consensus 131 RIP~~GRDm~y~-~~scDly~~gsg~-evYRlNLEq--Grf--L---~P~~~~~~~lN~----v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYH-KPSCDLYLVGSGS-EVYRLNLEQ--GRF--L---NPFETDSGELNV----VSINEEHGLLACGTEDG 197 (703)
T ss_pred ecCcCCcccccc-CCCccEEEeecCc-ceEEEEccc--ccc--c---ccccccccccee----eeecCccceEEecccCc
Confidence 112355663 5566677777655 333344443 443 2 334444466776 77888899999999999
Q ss_pred eEEEEeCCCCceeeEeecCCCC----------CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCC
Q 000836 1158 SIMLWDLEKEQQMVNPIPSSSD----------CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1227 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~v~ti~~hs~----------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~ 1227 (1262)
.|..||.|... .+.++..... ..|+++ .|..+|-.+++|+.+|.|.|||+|+.+.+.. .-++..-
T Consensus 198 ~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal-~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~---kdh~~e~ 272 (703)
T KOG2321|consen 198 VVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTAL-KFRDDGLHVAVGTSTGSVLIYDLRASKPLLV---KDHGYEL 272 (703)
T ss_pred eEEEecchhhh-hheeeecccccCCCccccccCcceEE-EecCCceeEEeeccCCcEEEEEcccCCceee---cccCCcc
Confidence 99999999987 6666543222 148999 8888899999999999999999999874332 2224467
Q ss_pred CeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1228 RVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1228 ~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
+|..+.|.+..++..++|.....+++||-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhccc
Confidence 99999998875567788888779999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-09 Score=111.85 Aligned_cols=159 Identities=13% Similarity=0.176 Sum_probs=122.6
Q ss_pred CCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCcEE----------EEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC
Q 000836 1036 KGTKTALLQP-FSP--IVVAADENERIKIWNYEEDTLL----------NSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102 (1262)
Q Consensus 1036 ~~V~sl~fsp-dg~--~Lasgs~dg~I~VWD~~tg~~l----------~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~ 1102 (1262)
+.+.|..+.. .+. ++++|.++|.+.+||+.++..+ ..+..|. .+|.++.|. ..-+.=++|+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldya--s~~~rGisgga 225 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYA--SSCDRGISGGA 225 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc---Ccceeeeec--hhhcCCcCCCc
Confidence 4466666533 333 5677889999999999998433 3344566 789999995 44445577888
Q ss_pred CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCe
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~V 1182 (1262)
+..+..|.+..+.+...+- ....-....|.. +...|++..++++|.|+.||||..++.. ++..+.-|+.. |
T Consensus 226 ~dkl~~~Sl~~s~gslq~~---~e~~lknpGv~g----vrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsag-v 296 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQIR---KEITLKNPGVSG----VRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAG-V 296 (323)
T ss_pred cccceeeeeccccCccccc---ceEEecCCCccc----eEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcc-e
Confidence 8899999997643443322 112223455666 7778999999999999999999999999 99999999987 9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000836 1183 SALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~DGsVrIWDl 1209 (1262)
+++ +|+++.+++++++.|+.|.+|++
T Consensus 297 n~v-Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAV-AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEE-EeCCCCchhhhccCCceEEeeec
Confidence 999 89999999999999999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=109.52 Aligned_cols=202 Identities=10% Similarity=0.102 Sum_probs=130.5
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-CCCeEEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAAD-ENERIKIWNYE-EDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWK 1110 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs-~dg~I~VWD~~-tg~~--l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS-~DG~IrIWD 1110 (1262)
..+..+.++|++++|++++ .++.|.+|++. +++. +..... ++....+.++ ++++++++++ .+|.|.+|+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~----~~~p~~i~~~--~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL----PGSPTHISTD--HQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC----CCCceEEEEC--CCCCEEEEEEcCCCeEEEEE
Confidence 4577889999999987765 47889999997 3432 222221 1346679996 7888777766 489999999
Q ss_pred cCCCCCcc-eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeE-----eecCCCCCCee
Q 000836 1111 DYDQKDKQ-KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN-----PIPSSSDCSIS 1183 (1262)
Q Consensus 1111 ~~~~~g~~-~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~~~~v~-----ti~~hs~~~Vt 1183 (1262)
+.. ++.. +.+ ..+.+ ...... +.++|+++++++++ .++.|.+||+.+.. .+. .+....+....
T Consensus 109 ~~~-~g~~~~~~---~~~~~-~~~~~~----~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 109 LDK-DGIPVAPI---QIIEG-LEGCHS----ANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred ECC-CCCCCCce---eeccC-CCcccE----eEeCCCCCEEEEeeCCCCEEEEEEECCCC-cccccCCCceecCCCCCCc
Confidence 964 2221 111 12221 122344 77899999998775 46899999998743 221 11111122256
Q ss_pred EEEEEcCCCCEEEEEEC-CCcEEEEECCCC--C-ceeeeecCCC---CCCCCeEEEEEecCCCCCEEEEec--CCceEEE
Q 000836 1184 ALTASQVHGGQLAAGFV-DGSVRLYDVRTP--D-MLVCSTRPHT---QQVERVVGISFQPGLDPAKVNGTP--KCLPSFS 1254 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~-DGsVrIWDlrs~--~-~~v~~~~~~~---gH~~~V~slafsp~~~g~~LaSgS--dd~I~~W 1254 (1262)
.+ .++++|++++++.. +++|.+||+... . .......... .+..+...++++|+ +++|+++. ++.|.+|
T Consensus 179 ~~-~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd--g~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 179 HM-VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD--GRHLYACDRTASLISVF 255 (330)
T ss_pred eE-EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC--CCEEEEecCCCCeEEEE
Confidence 77 78899998877766 899999999742 2 1222221111 12234457899999 88887775 3489999
Q ss_pred ec
Q 000836 1255 DL 1256 (1262)
Q Consensus 1255 DL 1256 (1262)
++
T Consensus 256 ~i 257 (330)
T PRK11028 256 SV 257 (330)
T ss_pred EE
Confidence 86
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-08 Score=117.69 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=124.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-CCCeEEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRI 1108 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~d---g~I~VWD~~tg~~--l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS-~DG~IrI 1108 (1262)
...+....|+|+|+.|+.++.+ ..|.+||+.+++. +..+.++ ...++|+ +||+.|+.++ .+|.+.|
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~~~~wS--PDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NGAPAFS--PDGSRLAFASSKDGVLNI 274 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cCceeEC--CCCCEEEEEEecCCcEEE
Confidence 3568899999999999887643 3699999988753 3333333 3368997 8998887764 6888777
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
|......+.. +.+..+...+.. ..|+|++..|+.++ .++..+||++.........+ ++.. .+. .
T Consensus 275 y~~d~~~~~~------~~lt~~~~~~~~----~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~-~ 339 (429)
T PRK01742 275 YVMGANGGTP------SQLTSGAGNNTE----PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSA-Q 339 (429)
T ss_pred EEEECCCCCe------EeeccCCCCcCC----EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCc-c
Confidence 7554311322 334445555556 89999999877665 47788888775433122223 3322 234 6
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEec
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDL 1256 (1262)
++++|+.++.++.++ +.+||+.+++.. ...... ...++.|+|+ |++|+.++ ++...+|++
T Consensus 340 ~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~-----~~~~~~~sPd--G~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 340 ISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTF-----LDESPSISPN--GIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCC-----CCCCceECCC--CCEEEEEEcCCCceEEEE
Confidence 799999998888766 556999877622 111111 2346789999 88888777 446666664
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-08 Score=129.61 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=194.9
Q ss_pred cccchhHHHhcc--chhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhh
Q 000836 461 EQLPIVLQVLLS--QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1262)
Q Consensus 461 ~~lPiVLqvLlS--~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~d 538 (1262)
|-+|.+.++|-+ +..+..|+.+|++.-....-.+...++.|.+|++++||.++..+.|.-+++++++|++..+++|.-
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 457788887776 446778888888877666666777788999999999999999999999999999999987788744
Q ss_pred hhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhh----------------hHHH-------------------
Q 000836 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG----------------QEAC------------------- 583 (1262)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~g----------------q~~~------------------- 583 (1262)
....+.++.++.+|.+.+ ++.|..|++.|+.+..+-... +..|
T Consensus 526 V~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 446688999999998776 488888999888885432111 1111
Q ss_pred --HhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHh
Q 000836 584 --IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1262)
Q Consensus 584 --~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als 661 (1262)
...|.++.+.++|+ ++++.++.-++-+|++++.+..+.....+..++...+..+|+++..+||+++.++|+
T Consensus 604 g~~~~ggL~~Lv~LL~-------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 604 GSAANDALRTLIQLLS-------SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhhccccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 13467788999998 889999999999999999998888777888888889999999999999999999999
Q ss_pred hccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHhhh
Q 000836 662 TLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 724 (1262)
Q Consensus 662 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~ 724 (1262)
++.... ...+.....+.+.+..|+.++.+.+..|+.++..+|..++..-+
T Consensus 677 nL~~~~-------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 677 ALSRSI-------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHhCC-------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 998321 11111233677788999999999999999999999998886644
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=121.66 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=127.4
Q ss_pred EEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCC--CC
Q 000836 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SG 1148 (1262)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~--~~ 1148 (1262)
..+.+|. +.|.++.|+ .+|.+|++||+|-.+.|||... .+ ++. ..-.+|...|.+ +.|-|. +.
T Consensus 44 ~eL~GH~---GCVN~LeWn--~dG~lL~SGSDD~r~ivWd~~~--~K--llh--sI~TgHtaNIFs----vKFvP~tnnr 108 (758)
T KOG1310|consen 44 AELTGHT---GCVNCLEWN--ADGELLASGSDDTRLIVWDPFE--YK--LLH--SISTGHTANIFS----VKFVPYTNNR 108 (758)
T ss_pred hhhcccc---ceecceeec--CCCCEEeecCCcceEEeecchh--cc--eee--eeecccccceeE----EeeeccCCCe
Confidence 4578899 999999996 8999999999999999999975 22 221 234689999988 777674 34
Q ss_pred EEEEEeCCCeEEEEeCCCCc---------eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceee--
Q 000836 1149 YLYASGEVSSIMLWDLEKEQ---------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-- 1217 (1262)
Q Consensus 1149 ~Llsgg~Dg~IrIWDlrs~~---------~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~-- 1217 (1262)
.+++|..|+.|+++|+.+.+ .....+..|.+. |..|+..+...+.|.+++.||++|-||+|.+..+..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r-VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR-VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhh-hhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 67777889999999998522 145566677776 888844443448999999999999999997542211
Q ss_pred ----eecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecccccc
Q 000836 1218 ----STRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIYFLA 1261 (1262)
Q Consensus 1218 ----~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLryfla 1261 (1262)
....+...--...++..+|. ...+|+.|+.+ -.+++|.|-.+.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhcc
Confidence 11111122235678999998 67788888877 888999766553
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-07 Score=109.48 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=128.6
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCCeEEEEE
Q 000836 1037 GTKTALLQPFSPIVVAADE-NERIKIWNYEE-D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWK 1110 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~-dg~I~VWD~~t-g---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG~IrIWD 1110 (1262)
.+..+.|+|+++++++++. ++.|.+||+.+ + +.+..+... .....+.++ +++++++ +...++.|.+||
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~----~~~~~~~~~--p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL----EGCHSANID--PDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC----CcccEeEeC--CCCCEEEEeeCCCCEEEEEE
Confidence 4678999999998888764 78999999974 3 223333222 345667886 7887775 555679999999
Q ss_pred cCCCCCcceEEee-eeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCC--c-eeeEeecCCCC-----C
Q 000836 1111 DYDQKDKQKLVTA-FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKE--Q-QMVNPIPSSSD-----C 1180 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa-~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~--~-~~v~ti~~hs~-----~ 1180 (1262)
+.. .+....... ..... .....+. +.|+|++.+++++.. ++.|.+||+... + ..+.++..... .
T Consensus 155 ~~~-~g~l~~~~~~~~~~~-~g~~p~~----~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 228 (330)
T PRK11028 155 LSD-DGHLVAQEPAEVTTV-EGAGPRH----MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR 228 (330)
T ss_pred ECC-CCcccccCCCceecC-CCCCCce----EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence 965 232210000 00111 1123344 889999999998865 899999999742 2 13444432111 1
Q ss_pred CeeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceEEEec
Q 000836 1181 SISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDL 1256 (1262)
Q Consensus 1181 ~VtsLa~~s~~g~lLatGs~-DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~~WDL 1256 (1262)
....+ .++++|++++++.. ++.|.+|++.............. -......+.++|+ |++|++++ ++.+.+|++
T Consensus 229 ~~~~i-~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~d--g~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 229 WAADI-HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP-TETQPRGFNIDHS--GKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred cceeE-EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe-ccccCCceEECCC--CCEEEEEEccCCcEEEEEE
Confidence 12346 67899998888754 78999999965432221111110 0134567899999 88887766 448999976
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=107.13 Aligned_cols=189 Identities=11% Similarity=0.185 Sum_probs=143.2
Q ss_pred CCEEEEEeCCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC--CeEEEEEcCCCCCcceE
Q 000836 1047 SPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--GNIRIWKDYDQKDKQKL 1120 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg----~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D--G~IrIWD~~~~~g~~~l 1120 (1262)
+..|++|..+|.+.+|..+.+ ..+..+..+. .+..|.-. +.+..++++|+.. ..++|||+.. . .++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~----g~~~~r~~-~~~p~Iva~GGke~~n~lkiwdle~--~-~qi 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP----GLYDVRQT-DTDPYIVATGGKENINELKIWDLEQ--S-KQI 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCC----ceeeeccC-CCCCceEecCchhcccceeeeeccc--c-eee
Confidence 457888888999999999844 2344444443 56667664 4566778889988 8899999976 2 222
Q ss_pred EeeeeeccCC------CC--cccccceeEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1121 VTAFSSIQGH------KP--GVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1121 vsa~~~l~~h------~~--~V~sv~l~v~wsp~--~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
|..-.-. .- ++++ +.|-+. ...+++++.-+.+|+||.+.++.++.+|.-.... |+++ ...+
T Consensus 187 ---w~aKNvpnD~L~LrVPvW~td----i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-is~~-~l~p 257 (412)
T KOG3881|consen 187 ---WSAKNVPNDRLGLRVPVWITD----IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-ISST-GLTP 257 (412)
T ss_pred ---eeccCCCCccccceeeeeecc----ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-ceee-eecC
Confidence 2221111 11 2333 556665 6788999999999999999887789999887776 9999 7789
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
.|+.+++|..-|.+..||.|.+....+. +++..+.|++++.+|. +.+|++++=| .++++|+.
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~---~kg~tGsirsih~hp~--~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCG---LKGITGSIRSIHCHPT--HPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccc---cCCccCCcceEEEcCC--CceEEeeccceeEEEeecc
Confidence 9999999999999999999988855543 4455689999999999 9999999966 99999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=116.52 Aligned_cols=200 Identities=13% Similarity=0.164 Sum_probs=129.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEee-CCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-LNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~-l~~~~-~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
+|...|.|+.|...+..+.+++++..+.-||+.+... +.... ..-+....+....--.......|+.+++||.+.|.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 5566678999998888888887555555555554321 11111 000000001111111112345788899999998877
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
-. ++.+ +.+..|...+.+ -.|+++|.-|+++|.||.|++|. +++. ...++..... +|.|+ .|.|
T Consensus 92 k~---~rVE-----~sv~AH~~A~~~----gRW~~dGtgLlt~GEDG~iKiWS-rsGM-LRStl~Q~~~-~v~c~-~W~p 155 (737)
T KOG1524|consen 92 KS---ARVE-----RSISAHAAAISS----GRWSPDGAGLLTAGEDGVIKIWS-RSGM-LRSTVVQNEE-SIRCA-RWAP 155 (737)
T ss_pred cc---chhh-----hhhhhhhhhhhh----cccCCCCceeeeecCCceEEEEe-ccch-HHHHHhhcCc-eeEEE-EECC
Confidence 64 3333 456788888887 89999999999999999999997 5555 3333333334 49999 5555
Q ss_pred CCC-EEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEec
Q 000836 1191 HGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1191 ~g~-lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDL 1256 (1262)
+.+ ++.+.+ |.+.|=-+.....++ .++.|.+-|.++.|++. ...++||++| ..++||-
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i----~WkAHDGiiL~~~W~~~--s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKII----RWRAHDGLVLSLSWSTQ--SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred CCCceEEecC--CeEEEeeccccccee----EEeccCcEEEEeecCcc--ccceeecCCceeEEeecc
Confidence 555 444443 445554454433232 34567799999999999 8899999988 9999994
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=110.56 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=149.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEee------------------cCCCcEEEEEeCCCeE
Q 000836 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN------------------ELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1045 pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn------------------~~dg~lLaTgS~DG~I 1106 (1262)
|...++|..+.||.++|||..+++.-..|.....-.+..++..|.= ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567889999999999999999887777754332234555666620 1134567888899999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
-+|+... ++.. ..-.-..|...|+. +.|+++-+.|+++|.|+.+..|+...+. .+....+.... +.++
T Consensus 83 ~~ys~~~--g~it---~~~st~~h~~~v~~----~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~-~~sl- 150 (541)
T KOG4547|consen 83 LLYSVAG--GEIT---AKLSTDKHYGNVNE----ILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPL-VSSL- 150 (541)
T ss_pred EEEEecC--CeEE---EEEecCCCCCccee----eecccccCceEecCCceeEEEEecccce-eeeeeccCCCc-cceE-
Confidence 9999975 4332 11233578888888 8999999999999999999999999998 88888887776 8899
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCC---CCCEEEEecC--CceEEEeccc
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL---DPAKVNGTPK--CLPSFSDLIY 1258 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~---~g~~LaSgSd--d~I~~WDLry 1258 (1262)
+..++|.++++++ +.|++||+.+.+ .+. .+.||.++|.++.|.-.. .|.+++++.. ..+.+|.+..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~ke-vv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKE-VVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCce-EEE---EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8899999999987 789999999887 443 567889999999996541 2566666653 3778887654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-07 Score=99.23 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=122.6
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1136 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~s 1136 (1262)
..|.|||=...+++.++.-. +.|.++.+. ...+++.- .+.|.||...+ .++....+.+.....+
T Consensus 75 NkviIWDD~k~~~i~el~f~----~~I~~V~l~----r~riVvvl-~~~I~VytF~~---n~k~l~~~et~~NPkG---- 138 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN----SEIKAVKLR----RDRIVVVL-ENKIYVYTFPD---NPKLLHVIETRSNPKG---- 138 (346)
T ss_pred ceEEEEecccCcEEEEEEec----cceeeEEEc----CCeEEEEe-cCeEEEEEcCC---ChhheeeeecccCCCc----
Confidence 36888986666777766543 478899884 34555554 66999999864 2333322222221211
Q ss_pred cceeEEEcCC-CCEEEEE-e-CCCeEEEEeCCCCcee--eEeecCCCCCCeeEEEEEcCCCCEEEEEECCCc-EEEEECC
Q 000836 1137 SNVVVDWQQQ-SGYLYAS-G-EVSSIMLWDLEKEQQM--VNPIPSSSDCSISALTASQVHGGQLAAGFVDGS-VRLYDVR 1210 (1262)
Q Consensus 1137 v~l~v~wsp~-~~~Llsg-g-~Dg~IrIWDlrs~~~~--v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGs-VrIWDlr 1210 (1262)
+ ++..|. +..+++. | .-|.|+|-|+...+ . -..+.+|.+. |.|+ ...-+|.++||++..|+ |||||.+
T Consensus 139 --l-C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~-~~~p~~I~AH~s~-Iacv-~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 139 --L-CSLCPTSNKSLLAFPGFKTGQVQIVDLASTK-PNAPSIINAHDSD-IACV-ALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred --e-EeecCCCCceEEEcCCCccceEEEEEhhhcC-cCCceEEEcccCc-eeEE-EEcCCccEEEEeccCcEEEEEEEcC
Confidence 1 333333 3344443 4 46999999998877 4 4788999887 9999 88899999999999997 6999999
Q ss_pred CCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEeccc
Q 000836 1211 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1211 s~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLry 1258 (1262)
+++.+....+... ...|.+++|+|+ +.+|+.+|+. ++.++-++-
T Consensus 213 ~g~~l~E~RRG~d--~A~iy~iaFSp~--~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQELRRGVD--RADIYCIAFSPN--SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeeeecCCc--hheEEEEEeCCC--ccEEEEEcCCCeEEEEEeec
Confidence 9985443333332 467999999999 8899998865 888887653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=114.28 Aligned_cols=163 Identities=18% Similarity=0.293 Sum_probs=122.2
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeec
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1127 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l 1127 (1262)
..++.++.||.+.|.+-. ++..+.+..|. +.|.+-.|+ +||.-|+|++.||.|++|.... -.. .++
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~sv~AH~---~A~~~gRW~--~dGtgLlt~GEDG~iKiWSrsG---MLR-----Stl 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVERSISAHA---AAISSGRWS--PDGAGLLTAGEDGVIKIWSRSG---MLR-----STV 141 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhhhhhhhh---hhhhhcccC--CCCceeeeecCCceEEEEeccc---hHH-----HHH
Confidence 367777779999888754 77778889999 899999997 8999999999999999999742 221 233
Q ss_pred cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEE
Q 000836 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207 (1262)
Q Consensus 1128 ~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIW 1207 (1262)
......|++ ++|.|+...++-+.. +.+.|=-+.... .+-...+|.+- |.++ .|++..+++++|+.|-..+||
T Consensus 142 ~Q~~~~v~c----~~W~p~S~~vl~c~g-~h~~IKpL~~n~-k~i~WkAHDGi-iL~~-~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 142 VQNEESIRC----ARWAPNSNSIVFCQG-GHISIKPLAANS-KIIRWRAHDGL-VLSL-SWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred hhcCceeEE----EEECCCCCceEEecC-CeEEEeeccccc-ceeEEeccCcE-EEEe-ecCccccceeecCCceeEEee
Confidence 445567888 999998887665532 345555556666 67778899886 8999 889999999999999999999
Q ss_pred ECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1208 Dlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
|-.... +. +...|..+|++++|.|+
T Consensus 214 D~~G~~-Lf----~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 214 DAQGAN-LF----TSAAEEYAITSVAFNPE 238 (737)
T ss_pred cccCcc-cc----cCChhccceeeeeeccc
Confidence 986432 22 23344555666666655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-08 Score=113.75 Aligned_cols=134 Identities=18% Similarity=0.322 Sum_probs=101.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC--------------Cc--------------EEEEeeCCCCCCCCeEEE
Q 000836 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEE--------------DT--------------LLNSFDNHDFPDKGISKL 1086 (1262)
Q Consensus 1036 ~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~t--------------g~--------------~l~~~~~h~~~~~~ItsL 1086 (1262)
+.|+|++|-|.++ .++++-.+|.+.+||.+- +. .+..+.-.. +.|..+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~---g~in~f 296 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE---GSINEF 296 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc---ccccce
Confidence 6799999998554 555666799999997642 10 111111122 578899
Q ss_pred EEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000836 1087 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1166 (1262)
Q Consensus 1087 ~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs 1166 (1262)
+|+ +||.+|++.|.||.+||||... .+++ ...+...+...+ ++|+|||.+|++||.|..|.||.+..
T Consensus 297 ~FS--~DG~~LA~VSqDGfLRvF~fdt----~eLl---g~mkSYFGGLLC----vcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 297 AFS--PDGKYLATVSQDGFLRIFDFDT----QELL---GVMKSYFGGLLC----VCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred eEc--CCCceEEEEecCceEEEeeccH----HHHH---HHHHhhccceEE----EEEcCCccEEEecCCcceEEEEEecc
Confidence 998 6999999999999999999965 2222 222333344555 99999999999999999999999999
Q ss_pred CceeeEeecCCCCCCeeEEEE
Q 000836 1167 EQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1167 ~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
.+ .+..-.+|.+. |+.+++
T Consensus 364 rR-VVARGqGHkSW-Vs~VaF 382 (636)
T KOG2394|consen 364 RR-VVARGQGHKSW-VSVVAF 382 (636)
T ss_pred ce-EEEeccccccc-eeeEee
Confidence 99 88888999886 998843
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8e-09 Score=118.45 Aligned_cols=190 Identities=14% Similarity=0.149 Sum_probs=148.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..|.++.|-.+.+++|++- ...+.|||-. |.-++.++.+. .|..+.|. +-.-+|++++..|.++--|+..
T Consensus 171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~~~----~v~rLeFL--PyHfLL~~~~~~G~L~Y~DVS~-- 240 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI----RVARLEFL--PYHFLLVAASEAGFLKYQDVST-- 240 (545)
T ss_pred hhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhhcC----chhhhccc--chhheeeecccCCceEEEeech--
Confidence 4577888888888888886 7889999976 77788887776 78899997 6777889999999999999976
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
| ++|..+++-.+ .+.. +.-+|-+..+-+|...|+|.+|.-.+.. ++..+-+|.+. |.+| ++.++|+++
T Consensus 241 G--klVa~~~t~~G---~~~v----m~qNP~NaVih~GhsnGtVSlWSP~ske-PLvKiLcH~g~-V~si-Av~~~G~YM 308 (545)
T KOG1272|consen 241 G--KLVASIRTGAG---RTDV----MKQNPYNAVIHLGHSNGTVSLWSPNSKE-PLVKILCHRGP-VSSI-AVDRGGRYM 308 (545)
T ss_pred h--hhhHHHHccCC---ccch----hhcCCccceEEEcCCCceEEecCCCCcc-hHHHHHhcCCC-cceE-EECCCCcEE
Confidence 4 34544443322 2333 5667777788888999999999999999 99999999997 9999 889999999
Q ss_pred EEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEe
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSD 1255 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WD 1255 (1262)
+|.+.|..|+|||+|+...+.... + ..+...++++.. | .|+.+-.+.+.+|.
T Consensus 309 aTtG~Dr~~kIWDlR~~~ql~t~~-t----p~~a~~ls~Sqk--g-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 309 ATTGLDRKVKIWDLRNFYQLHTYR-T----PHPASNLSLSQK--G-LLALSYGDHVQIWK 360 (545)
T ss_pred eecccccceeEeeeccccccceee-c----CCCccccccccc--c-ceeeecCCeeeeeh
Confidence 999999999999999877433222 2 245677888766 3 45555455777874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=107.59 Aligned_cols=183 Identities=14% Similarity=0.245 Sum_probs=134.9
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCC--CcEEEEECCCCcEEEEeeCCCCC--------CCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1035 EKGTKTALLQPFSPIVV-AADEN--ERIKIWNYEEDTLLNSFDNHDFP--------DKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~La-sgs~d--g~I~VWD~~tg~~l~~~~~h~~~--------~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
+.++..|.-++..++++ +|+.. ..+.|||++..+.+ |.+.+.+ .-.++++.|....+...|+|++.-
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred CCceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceEEEEecc
Confidence 35667777777666555 48877 78999999987544 4443322 145789999733336889999999
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-ecCCCCCCe
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSI 1182 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t-i~~hs~~~V 1182 (1262)
+.||+||.+. +.++ | ..+.-....+.+ +.-.|.++.+++|..-+.+..+|+++++ .... +.+-.++ |
T Consensus 226 hqvR~YDt~~-qRRP--V---~~fd~~E~~is~----~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~tGs-i 293 (412)
T KOG3881|consen 226 HQVRLYDTRH-QRRP--V---AQFDFLENPISS----TGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGITGS-I 293 (412)
T ss_pred eeEEEecCcc-cCcc--e---eEeccccCccee----eeecCCCcEEEEecccchhheecccCce-eeccccCCccCC-c
Confidence 9999999986 2222 2 233334556776 5556999999999999999999999999 6555 7777776 9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
++| ..++.++++++|+-|..|||+|+.+.+.+...+ . .+.++++-+.++
T Consensus 294 rsi-h~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--v---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 294 RSI-HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--V---KSRLTFILLRDD 342 (412)
T ss_pred ceE-EEcCCCceEEeeccceeEEEeecccchhhhhhh--h---hccccEEEecCC
Confidence 999 778889999999999999999999866443332 1 245777777665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=103.58 Aligned_cols=215 Identities=15% Similarity=0.243 Sum_probs=143.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeCCCCC---------CCCeEEEEEeecCCCcEEEEEe
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT-----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~-----~l~~~~~h~~~---------~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
.-+.++.|..+|.+|+||+.+|.|.++.-+... ....|+.|.++ ...|..+.|..+.....++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 448899999999999999999999999765432 34556667643 2468889998556667888889
Q ss_pred CCCeEEEEEcCCCCCcc-----------eEEee-----------------eeec-cCCCCcccccceeEEEcCCCCEEEE
Q 000836 1102 CNGNIRIWKDYDQKDKQ-----------KLVTA-----------------FSSI-QGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~~g~~-----------~lvsa-----------------~~~l-~~h~~~V~sv~l~v~wsp~~~~Lls 1152 (1262)
.|.+|++|.++....+. .-++. -+.. ..|...|++ +.++.++..++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS----IS~NsD~Et~l- 180 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS----ISVNSDKETFL- 180 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee----eeecCccceEe-
Confidence 99999999997522111 00000 0111 235556666 77777665555
Q ss_pred EeCCCeEEEEeCCCCcee--eEeecCCCCC----CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceee---eecC--
Q 000836 1153 SGEVSSIMLWDLEKEQQM--VNPIPSSSDC----SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC---STRP-- 1221 (1262)
Q Consensus 1153 gg~Dg~IrIWDlrs~~~~--v~ti~~hs~~----~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~---~~~~-- 1221 (1262)
+.+|=.|.+|++.-..++ +..+..+... .|++-.+.+.+.++|+-.+..|+||+.|+|....+-. .+..
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 456778999998754412 2233222211 2566634444678899999999999999995432111 1100
Q ss_pred -------CCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1222 -------HTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1222 -------~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
+.+-...|..+.|+.. |+++++-+--++++||+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~s--GryilsRDyltvk~wD~n 301 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS--GRYILSRDYLTVKLWDLN 301 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC--CcEEEEeccceeEEEecc
Confidence 1112346889999999 999998877799999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-07 Score=97.68 Aligned_cols=151 Identities=13% Similarity=0.250 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEE--EeCCCe
Q 000836 1039 KTALLQPFSPIVVAADE----------NERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV--ASCNGN 1105 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~----------dg~I~VWD~~t-g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaT--gS~DG~ 1105 (1262)
..+.|++.|.+|++-.. -|...+|.++. +..+..+.-.. .+.|.+++|+ ++|+.|++ |..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~--~~~I~~~~Ws--P~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK--EGPIHDVAWS--PNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC--CCceEEEEEC--cCCCEEEEEEccCCcc
Confidence 46789999987776332 12355555522 23344443322 1469999997 78887654 456789
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeEeecCCCCCCe
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~---Dg~IrIWDlrs~~~~v~ti~~hs~~~V 1182 (1262)
|.+||.+. +.+ ..+ +...++. +.|+|+|.+++++|. .|.|.+||+++.+ .+.+.... . +
T Consensus 85 v~lyd~~~-----~~i---~~~--~~~~~n~----i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~~~--~-~ 146 (194)
T PF08662_consen 85 VTLYDVKG-----KKI---FSF--GTQPRNT----ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFEHS--D-A 146 (194)
T ss_pred cEEEcCcc-----cEe---Eee--cCCCceE----EEECCCCCEEEEEEccCCCcEEEEEECCCCE-EeeccccC--c-E
Confidence 99999953 222 222 2344555 999999999999864 4679999999887 77666432 2 7
Q ss_pred eEEEEEcCCCCEEEEEEC------CCcEEEEECCCCC
Q 000836 1183 SALTASQVHGGQLAAGFV------DGSVRLYDVRTPD 1213 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~------DGsVrIWDlrs~~ 1213 (1262)
+.+ .|+|+|++|+++.. |..++||+.. ++
T Consensus 147 t~~-~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 147 TDV-EWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred EEE-EEcCCCCEEEEEEeccceeccccEEEEEec-Ce
Confidence 888 89999999999864 7889999985 44
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.2e-07 Score=99.67 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=128.1
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----cE----------EEEeeCCCCCCCCeEEEEEeecCCCcEEE
Q 000836 1034 FEKGTKTALLQPFS-PIVVAADENERIKIWNYEED----TL----------LNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg-~~Lasgs~dg~I~VWD~~tg----~~----------l~~~~~h~~~~~~ItsL~fsn~~dg~lLa 1098 (1262)
....|+|++|-|.+ .-|++|+ .+.|.||..... .. +...++| ..|++|.|. +||..++
T Consensus 139 sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh----~pVtsmqwn--~dgt~l~ 211 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH----NPVTSMQWN--EDGTILV 211 (445)
T ss_pred hhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC----ceeeEEEEc--CCCCEEe
Confidence 34679999999954 4677777 567999987532 11 1122333 489999995 7899999
Q ss_pred EEe-CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCC
Q 000836 1099 VAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177 (1262)
Q Consensus 1099 TgS-~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~h 1177 (1262)
+++ .|..|.|||...+.+ ..+. ++ ..+.+.- +.|+|++..++++.-|++.++|.......+..-+ ..
T Consensus 212 tAS~gsssi~iWdpdtg~~-~pL~--~~----glgg~sl----LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lg 279 (445)
T KOG2139|consen 212 TASFGSSSIMIWDPDTGQK-IPLI--PK----GLGGFSL----LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LG 279 (445)
T ss_pred ecccCcceEEEEcCCCCCc-cccc--cc----CCCceee----EEEcCCCCEEEEecccceeeeehhcccceeccee-cc
Confidence 887 568899999987222 1111 11 1223333 8999999999999999999999655443133333 33
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee-----------eeecCC---------CCCCCCeEEEEEecC
Q 000836 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV-----------CSTRPH---------TQQVERVVGISFQPG 1237 (1262)
Q Consensus 1178 s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v-----------~~~~~~---------~gH~~~V~slafsp~ 1237 (1262)
++. |+.- +|+|.|..|+-.+. |+-++|.+.-..+.. .....+ .-..+.+.+++|.|.
T Consensus 280 sgr-vqta-cWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 280 SGR-VQTA-CWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred CCc-eeee-eecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 344 7777 78999986655443 445566553221100 000000 012467899999999
Q ss_pred CCCCEEEEecCC---------ceEEEecccc
Q 000836 1238 LDPAKVNGTPKC---------LPSFSDLIYF 1259 (1262)
Q Consensus 1238 ~~g~~LaSgSdd---------~I~~WDLryf 1259 (1262)
|.+|++.-++ .|..||.|..
T Consensus 357 --GeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 357 --GEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred --CCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 8888875432 4556776543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.7e-08 Score=107.87 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=126.8
Q ss_pred EEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC--CCcceEEeeeeecc-CCCCcccccceeEEEcCCC
Q 000836 1071 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQS 1147 (1262)
Q Consensus 1071 ~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~--~g~~~lvsa~~~l~-~h~~~V~sv~l~v~wsp~~ 1147 (1262)
..+.+|. ++|.++.|+ .++.+|++|+.|..+++|.+... ...++. +.... .|.+.|.+ ++|.-.+
T Consensus 50 KD~~~H~---GCiNAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP---I~~~~~~H~SNIF~----L~F~~~N 117 (609)
T KOG4227|consen 50 KDVREHT---GCINALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKTPKP---IGVMEHPHRSNIFS----LEFDLEN 117 (609)
T ss_pred hhhhhhc---cccceeeec--cCCeEEeecCCcceeeeechHHHHhhcCCCC---ceeccCccccceEE----EEEccCC
Confidence 3456787 899999998 56999999999999999998641 001111 12222 34567777 9999888
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeEeecCCC--CCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCC
Q 000836 1148 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1225 (1262)
Q Consensus 1148 ~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs--~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH 1225 (1262)
..+++|+.+++|...|+++.+ .+..+.... +. |..+ ..+|..+.|++.+.+|.|.+||.|..+.....+ .....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q-si~V~~~~~~~~~-VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~ 193 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ-SIYVANENNNRGD-VYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANS 193 (609)
T ss_pred eeEecCCCcceeEeeecccce-eeeeecccCcccc-eeec-ccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCC
Confidence 899999999999999999988 666554332 33 8999 677888999999999999999999766333222 11222
Q ss_pred CCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1226 VERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1226 ~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
......+.|+|- ....|++++ .+-+.+||.|.
T Consensus 194 ~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 194 GKNFYTAEFHPE-TPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CccceeeeecCC-CceeEEeccccCCCCceeecc
Confidence 356788999998 566777777 44888999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-07 Score=101.27 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=125.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE-e-CCCeEEEEEc
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-S-CNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg-S-~DG~IrIWD~ 1111 (1262)
....|.+|.++. +.|++.-+ +.|.|||+++-+.++++..-.+...++.+++++ .++.+++-- + ..|.|.|||.
T Consensus 86 fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n--~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 FPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN--NANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred cCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccC--CCCceEEecCCCCCceEEEEEc
Confidence 346788888864 46777663 459999999999999887764334668777775 555676643 3 4599999999
Q ss_pred CCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEeecCCCCC-CeeEEEEEc
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS-IMLWDLEKEQQMVNPIPSSSDC-SISALTASQ 1189 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~-IrIWDlrs~~~~v~ti~~hs~~-~VtsLa~~s 1189 (1262)
.+ .+-+ ..+..|.+.+-+ ++|+++|..|+++++.|+ |||+++..++ .+.+|+-+... .|.++ +|+
T Consensus 161 ~n----l~~v---~~I~aH~~~lAa----lafs~~G~llATASeKGTVIRVf~v~~G~-kl~eFRRG~~~~~IySL-~Fs 227 (391)
T KOG2110|consen 161 IN----LQPV---NTINAHKGPLAA----LAFSPDGTLLATASEKGTVIRVFSVPEGQ-KLYEFRRGTYPVSIYSL-SFS 227 (391)
T ss_pred cc----ceee---eEEEecCCceeE----EEECCCCCEEEEeccCceEEEEEEcCCcc-EeeeeeCCceeeEEEEE-EEC
Confidence 65 2222 566789999988 999999999999998776 7999999999 99998765432 47889 899
Q ss_pred CCCCEEEEEECCCcEEEEECCC
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs 1211 (1262)
+++.+|++.+..++|+||.+..
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999998754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-07 Score=100.63 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=135.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.|...|++++|.|..+.|++++.|.+-+||....+ +..-.+..++ ...+++.|+ +.++.|++||.-..|.||
T Consensus 53 ~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN---rAAt~V~Ws--P~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN---RAATCVKWS--PKENKFAVGSGARLISVC 127 (361)
T ss_pred hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec---cceeeEeec--CcCceEEeccCccEEEEE
Confidence 35677999999999999999999999999998433 4444566677 789999997 889999999999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCC-----CCc------------eeeE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-----KEQ------------QMVN 1172 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlr-----s~~------------~~v~ 1172 (1262)
-.+.. ... .|+ -..-+.+.+.|.+ ++|+|.+-.+++|+.|+.+||+..- ... ..+.
T Consensus 128 y~E~E-NdW-WVs-KhikkPirStv~s----ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~ 200 (361)
T KOG1523|consen 128 YYEQE-NDW-WVS-KHIKKPIRSTVTS----LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMS 200 (361)
T ss_pred EEecc-cce-ehh-hhhCCccccceee----eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHH
Confidence 88651 111 010 0122334455666 9999999999999999999998642 110 0222
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1173 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1173 ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
++. ..++.+..+ .|++.|+.|+-.+.|+.|.+-|...+...+..... .+ -+..++.|-..
T Consensus 201 E~~-~~ggwvh~v-~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~--~~-lP~ls~~~ise 260 (361)
T KOG1523|consen 201 EAS-SSGGWVHGV-LFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT--AQ-LPLLSVSWISE 260 (361)
T ss_pred hhc-cCCCceeee-EeCCCCCEeeEecCCCceEEeecCCCchhccchhh--cc-CCceeeEeecC
Confidence 332 233359999 89999999999999999999998766422222211 11 56777777655
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-07 Score=110.59 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=128.9
Q ss_pred CcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeee-eccCCCCcc
Q 000836 1057 ERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS-SIQGHKPGV 1134 (1262)
Q Consensus 1057 g~I~VWD~~tg-~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~-~l~~h~~~V 1134 (1262)
+.+.||+++.. .....+... ..|++++|+ +.+..+++.|+.+|.|.+||++...... .+... ....|...+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~-p~~p~ll~gG~y~GqV~lWD~~~~~~~~--~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFC-PFDPNLLAGGCYNGQVVLWDLRKGSDTP--PSGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEec-cCCcceEEeeccCceEEEEEccCCCCCC--CcccccccccCCcCe
Confidence 47999999865 333444333 589999997 7889999999999999999998733321 11111 223466677
Q ss_pred cccceeEEEcCCCCE--EEEEeCCCeEEEEeCCCCceeeEeec----C------CCCCCeeEEEEEcCCCCEEEEEECCC
Q 000836 1135 RCSNVVVDWQQQSGY--LYASGEVSSIMLWDLEKEQQMVNPIP----S------SSDCSISALTASQVHGGQLAAGFVDG 1202 (1262)
Q Consensus 1135 ~sv~l~v~wsp~~~~--Llsgg~Dg~IrIWDlrs~~~~v~ti~----~------hs~~~VtsLa~~s~~g~lLatGs~DG 1202 (1262)
.. +.|.++... +++++.||.|..|+++.-..++.... . .....++++++...+.+.|+.|+.+|
T Consensus 295 ~~----vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 295 TA----VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred EE----EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 76 888765554 99999999999999876541111111 1 11124888865566778999999999
Q ss_pred cEEEEECCCCCcee----eeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1203 SVRLYDVRTPDMLV----CSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1203 sVrIWDlrs~~~~v----~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
.|..-+........ .....+..|.++|.++.++|- ....+++++|..+++|.--
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF-~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF-YPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCC-ccceeeeeccceeEecccc
Confidence 98763333222111 112245568899999999999 5566777777799999854
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-08 Score=110.63 Aligned_cols=211 Identities=11% Similarity=0.175 Sum_probs=150.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~-h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
.+|.+.|..|.|+..|..|++|++|..|.+|||.+++....|.. |. ..|-.-+|.+..+..-+++++.||.||+=.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~---~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC---NNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc---cchhhhhccCCCCCcCceeccccCceeeee
Confidence 45778899999999999999999999999999999987776654 55 667777787555667899999999999977
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeec---CCCC--CCeeE
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSD--CSISA 1184 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~---~hs~--~~Vts 1184 (1262)
+.. .+..+-. ..+..|.+.|.- ++.-|+.. .++++|.|+.+.-.|++... +...+. .+.. -...+
T Consensus 216 i~~-t~~~e~t---~rl~~h~g~vhk----lav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 216 ILE-TGYVENT---KRLAPHEGPVHK----LAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYT 286 (559)
T ss_pred ecc-ccceecc---eecccccCccce----eeecCCCCCcccccccccceeeeeeccCC-ccceeeeeccCCccceeeee
Confidence 754 2333222 445667777777 55556554 67788999999999999876 444332 2222 12667
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCCce--eeeecCCC------CCCCCeEEEEEecCCCCCEEEEecCCceEEEe
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDML--VCSTRPHT------QQVERVVGISFQPGLDPAKVNGTPKCLPSFSD 1255 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~~~~--v~~~~~~~------gH~~~V~slafsp~~~g~~LaSgSdd~I~~WD 1255 (1262)
++..+.+.+.|++|+.|..+|+||.|.-... ...+..+- .....|++++++.+ ++..|++-++..|.++.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~-~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD-GSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC-ccceeeeecccceEEec
Confidence 7444455669999999999999999864321 01111111 12346999999977 56677776766777653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=105.94 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=120.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCCeEEEEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWK 1110 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~d---g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG~IrIWD 1110 (1262)
...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +.... +.+....|+ +||+.|+ +.+.+|...||.
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~---g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK---GSNSAPAWS--PDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC---CCccceEEC--CCCCEEEEEEccCCCceEEE
Confidence 3457789999999988876643 359999999886543 33222 345678997 7887775 677889888887
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeC--CCCceeeEeecCCCCCCeeEEEE
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDL--EKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDl--rs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
.....+.. +.+..+...... ..|+|+|..++.+++ ++...+|.+ ..+. ...+..+... .... .
T Consensus 269 ~d~~~~~~------~~lt~~~~~~~~----~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~~-~~~~-~ 334 (427)
T PRK02889 269 VNADGSGL------RRLTQSSGIDTE----PFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGSY-NTSP-R 334 (427)
T ss_pred EECCCCCc------EECCCCCCCCcC----eEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCCC-cCce-E
Confidence 65422222 234444444444 789999998887654 456666654 4444 2222222222 3345 6
Q ss_pred EcCCCCEEEEEECCC---cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1188 SQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DG---sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
++++|+.++..+.++ .|.+||+.+++ .. .+ ... .......|+|+ |++|+.++
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~-~l-t~~---~~~~~p~~spd--g~~l~~~~ 389 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQ-VT-AL-TDT---TRDESPSFAPN--GRYILYAT 389 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCC-eE-Ec-cCC---CCccCceECCC--CCEEEEEE
Confidence 899999988777654 59999998766 22 22 111 23467899999 77777666
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=104.17 Aligned_cols=192 Identities=10% Similarity=0.028 Sum_probs=123.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCC--eEEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRI 1108 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~---dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG--~IrI 1108 (1262)
...+.+..|+|+|+.|+..+. +..|.+||+.+++... +.... +...+..|+ +||+.++ +.+.+| .|.+
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~---g~~~~~~~S--pDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR---GINGAPSFS--PDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC---CCccCceEC--CCCCEEEEEEeCCCCceEEE
Confidence 345788899999999888763 3469999998876533 32333 344578997 7887664 556666 5888
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCe--EEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSS--IMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~--IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
||... ++. +.+..+...... ..|+|++..++.+++ ++. |.++|+.+++ ...+..+... ....
T Consensus 277 ~d~~~--g~~------~~lt~~~~~~~~----~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~-~~~~ 341 (433)
T PRK04922 277 MDLGS--RQL------TRLTNHFGIDTE----PTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNY-NARA 341 (433)
T ss_pred EECCC--CCe------EECccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEeecCCCC-ccCE
Confidence 88865 332 233444333344 899999998887764 444 6667776665 3333322222 4456
Q ss_pred EEEcCCCCEEEEEECCC---cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC--C--ceEEEec
Q 000836 1186 TASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK--C--LPSFSDL 1256 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~DG---sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd--d--~I~~WDL 1256 (1262)
.++++|+.++..+.++ .|.+||+.+++ .. .+ .. ........|+|+ |++++..++ + .+..+++
T Consensus 342 -~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~-~L-t~---~~~~~~p~~spd--G~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 342 -SVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VR-TL-TP---GSLDESPSFAPN--GSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred -EECCCCCEEEEEECCCCceeEEEEECCCCC-eE-EC-CC---CCCCCCceECCC--CCEEEEEEecCCceEEEEEEC
Confidence 7899999888765443 58999998766 22 22 22 123456799999 777766553 2 5666665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=94.81 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=99.2
Q ss_pred EEEEeecCCCcEEEEEeC----------CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-
Q 000836 1085 KLCLVNELDVSLLLVASC----------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS- 1153 (1262)
Q Consensus 1085 sL~fsn~~dg~lLaTgS~----------DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg- 1153 (1262)
.+.|+ ++|+.|+.-.. -|...+|.++........+ .+. ....|.+ ++|+|++..+++.
T Consensus 10 ~~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i----~l~-~~~~I~~----~~WsP~g~~favi~ 78 (194)
T PF08662_consen 10 KLHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI----ELK-KEGPIHD----VAWSPNGNEFAVIY 78 (194)
T ss_pred EEEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee----ecc-CCCceEE----EEECcCCCEEEEEE
Confidence 46775 66765544322 2446666664422222111 111 2345888 9999999987655
Q ss_pred e-CCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCceeeeecCCCCCCCCe
Q 000836 1154 G-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1262)
Q Consensus 1154 g-~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V 1229 (1262)
| .++.|.+||++ .+ .+.++.. .. +..+ .|+|+|+++++|+. .|.|.+||.+..+ .+... .| ..+
T Consensus 79 g~~~~~v~lyd~~-~~-~i~~~~~--~~-~n~i-~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~----~~-~~~ 146 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GK-KIFSFGT--QP-RNTI-SWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTF----EH-SDA 146 (194)
T ss_pred ccCCcccEEEcCc-cc-EeEeecC--CC-ceEE-EECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeecc----cc-CcE
Confidence 3 46799999997 55 5777753 33 7888 89999999998864 4679999999666 33222 22 347
Q ss_pred EEEEEecCCCCCEEEEec-------CCceEEEec
Q 000836 1230 VGISFQPGLDPAKVNGTP-------KCLPSFSDL 1256 (1262)
Q Consensus 1230 ~slafsp~~~g~~LaSgS-------dd~I~~WDL 1256 (1262)
+.++|+|+ |++|++++ ++.+++|+.
T Consensus 147 t~~~WsPd--Gr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 147 TDVEWSPD--GRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEEcCC--CCEEEEEEeccceeccccEEEEEe
Confidence 99999999 99998886 348888985
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=105.83 Aligned_cols=195 Identities=15% Similarity=0.236 Sum_probs=137.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..-..+++|...--|+.++....|.-++++.|..+..|.... +.++++..+ +...+|++|+.||+|..||.+. .
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~---~~lN~v~in--~~hgLla~Gt~~g~VEfwDpR~-k 207 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS---GELNVVSIN--EEHGLLACGTEDGVVEFWDPRD-K 207 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEcccccccccccccc---ccceeeeec--CccceEEecccCceEEEecchh-h
Confidence 334567777544445555556778889999999999988777 789999986 5667999999999999999986 2
Q ss_pred CcceEEeeeeeccCCC-----CcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC
Q 000836 1116 DKQKLVTAFSSIQGHK-----PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~-----~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
..+..+..-..+..|. ..|++ +.|+.+|-.+.+|..+|.|.|||+|..+ ++..-......+|..+.+...
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTa----l~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTA----LKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhheeeecccccCCCccccccCcceE----EEecCCceeEEeeccCCcEEEEEcccCC-ceeecccCCccceeeeccccc
Confidence 2222221111222222 33666 8998888899999999999999999999 766555444446888844333
Q ss_pred C-CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC
Q 000836 1191 H-GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1191 ~-g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
+ ++.+++. ....++|||-.+++... .+ +....++.+++-|+ +.++.+|-++
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~a-si----Ept~~lND~C~~p~--sGm~f~Ane~ 334 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKPMA-SI----EPTSDLNDFCFVPG--SGMFFTANES 334 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCcee-ec----cccCCcCceeeecC--CceEEEecCC
Confidence 3 3455544 45789999999988443 22 22456999999999 6677777765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-07 Score=113.15 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=145.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEE
Q 000836 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1262)
Q Consensus 1042 ~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lv 1121 (1262)
.+.-.++.++.+..++.+.+||+..+..+..+..... ..-.+++-+.+..+.-++++|+.-|.|.+|+... +..+
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p--- 168 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DNKP--- 168 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEeccccccEEEEeccc-cCCc---
Confidence 3445667888888899999999998877766654430 0112333343345667899999999999999974 2222
Q ss_pred eeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE-eecCCCCCCeeEEEEEcCCCCEEEEEEC
Q 000836 1122 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFV 1200 (1262)
Q Consensus 1122 sa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~-ti~~hs~~~VtsLa~~s~~g~lLatGs~ 1200 (1262)
..+.+|.+.+.. +.|+-+|.++++.|+|+++|+|++.+.+ ... ..-+|+.. |..+ ++.++ .+++++.
T Consensus 169 ---~~l~GHeG~iF~----i~~s~dg~~i~s~SdDRsiRlW~i~s~~-~~~~~~fgHsaR-vw~~-~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 169 ---IRLKGHEGSIFS----IVTSLDGRYIASVSDDRSIRLWPIDSRE-VLGCTGFGHSAR-VWAC-CFLPN--RIITVGE 236 (967)
T ss_pred ---ceecccCCceEE----EEEccCCcEEEEEecCcceeeeeccccc-ccCcccccccce-eEEE-Eeccc--eeEEecc
Confidence 147899999998 9999999999999999999999999988 444 66678776 8887 66665 9999999
Q ss_pred CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1201 DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
|.+.++|+..... ...+..|. ...|..++..++ ...++|+++| .+++||+.
T Consensus 237 dctcrvW~~~~~~--l~~y~~h~--g~~iw~~~~~~~--~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 237 DCTCRVWGVNGTQ--LEVYDEHS--GKGIWKIAVPIG--VIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceEEEEEecccce--ehhhhhhh--hcceeEEEEcCC--ceEEEeeccCcchhhhhhh
Confidence 9999999665333 22333333 356899999888 8888898866 99999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-07 Score=108.11 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=116.7
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCCCcceEEeeeeeccCCCC
Q 000836 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1262)
Q Consensus 1056 dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~ 1132 (1262)
+..|.|||..... ...+..+. ..+.+..|+ +||+.|+.++.+ ..|++||+.. ++...+ ..+.++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~wS--PDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l---~~~~g~-- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS---QPLMSPAWS--PDGSKLAYVSFENKKSQLVVHDLRS--GARKVV---ASFRGH-- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC---CccccceEc--CCCCEEEEEEecCCCcEEEEEeCCC--CceEEE---ecCCCc--
Confidence 4689999987444 45566666 678999998 899998887654 4699999976 443333 223333
Q ss_pred cccccceeEEEcCCCCEEEEEe-CCCeEEEE--eCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEE-CCCcEEEEE
Q 000836 1133 GVRCSNVVVDWQQQSGYLYASG-EVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYD 1208 (1262)
Q Consensus 1133 ~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIW--Dlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs-~DGsVrIWD 1208 (1262)
... +.|+|+|..|+.++ .+|.+.|| |+.++. +..+..+... +.+. .|+++|..++.++ .+|...||+
T Consensus 250 -~~~----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~-~~~~-~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 250 -NGA----PAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGN-NTEP-SWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred -cCc----eeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCC-cCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 223 89999999888774 57766555 666555 4555555543 6777 8899999766555 578899998
Q ss_pred CCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1209 lrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
+.......... .. .. .+..|+|+ |+.|+.++.+.+..||+.
T Consensus 321 ~~~~~~~~~~l-~~---~~--~~~~~SpD--G~~ia~~~~~~i~~~Dl~ 361 (429)
T PRK01742 321 MSASGGGASLV-GG---RG--YSAQISAD--GKTLVMINGDNVVKQDLT 361 (429)
T ss_pred EECCCCCeEEe-cC---CC--CCccCCCC--CCEEEEEcCCCEEEEECC
Confidence 76533222222 22 22 35789999 888877776666678864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-06 Score=101.58 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE-eCCC--eEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAAD---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNG--NIRIW 1109 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs---~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg-S~DG--~IrIW 1109 (1262)
..+...+|+|+|+.|+..+ .+..|.+||+.+++... +.... +.+....|+ +||+.|+.. +.+| .|.+|
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~---~~~~~~~~S--PDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFP---RHNGAPAFS--PDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCC---CCcCCeEEC--CCCCEEEEEEcCCCCcEEEEE
Confidence 4578999999999888653 24579999998875432 22222 234468897 888877654 4455 48888
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCC-Ce--EEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SS--IMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~D-g~--IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
|... ++.. .+..+...+.. ..|+|++..|+.++++ +. |.++|+..+. ...+...... ..+.
T Consensus 273 d~~t--g~~~------~lt~~~~~~~~----~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~-~~~~- 336 (429)
T PRK03629 273 DLAS--GQIR------QVTDGRSNNTE----PTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQ-NQDA- 336 (429)
T ss_pred ECCC--CCEE------EccCCCCCcCc----eEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCC-ccCE-
Confidence 8865 3332 23333334445 8999999988777653 44 4445666655 3344333332 4455
Q ss_pred EEcCCCCEEEEEECC---CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC----ceEEEec
Q 000836 1187 ASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC----LPSFSDL 1256 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~D---GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd----~I~~WDL 1256 (1262)
.++++|+.++..+.+ ..|.+||+.+++ . ..+ ... ....+..|+|+ |+.|+.++.+ .+.++++
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~-~~L-t~~---~~~~~p~~SpD--G~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVL-TDT---FLDETPSIAPN--GTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEe-CCC---CCCCCceECCC--CCEEEEEEcCCCceEEEEEEC
Confidence 789999988776543 358889998766 2 222 111 12346789999 8888777633 3555554
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-06 Score=105.59 Aligned_cols=213 Identities=14% Similarity=0.212 Sum_probs=135.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--D--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t--g--~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
|.-.++|.++||.++++|+|+.||.|.||.--. + .....+.=|. ..|+++.|+ .+|.+|++|+..|.+-+|
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---~~V~~L~fS--~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---DEVNSLSFS--SDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc---cccceeEEe--cCCceEeecccceEEEEE
Confidence 334489999999999999999999999997543 2 2233455576 789999998 899999999999999999
Q ss_pred EcCCCCCcceEE----eee---------------------eeccC-------CCCc---c--------cccceeEEEcCC
Q 000836 1110 KDYDQKDKQKLV----TAF---------------------SSIQG-------HKPG---V--------RCSNVVVDWQQQ 1146 (1262)
Q Consensus 1110 D~~~~~g~~~lv----sa~---------------------~~l~~-------h~~~---V--------~sv~l~v~wsp~ 1146 (1262)
.+.+.+ .+.. +.+ ..+.. +.+. . .++...+..+|.
T Consensus 279 q~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 279 QLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred eecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 998732 2111 000 00100 0000 0 112233566666
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEee----------------------------------------------------
Q 000836 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPI---------------------------------------------------- 1174 (1262)
Q Consensus 1147 ~~~Llsgg~Dg~IrIWDlrs~~~~v~ti---------------------------------------------------- 1174 (1262)
.+.++-.+..|.|.+||+-+.. .+..+
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~-~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDS-TIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CCceeecCCCceEEEEeccccc-eeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 6666666777777777775433 11111
Q ss_pred ---------------c-CCCCCCeeEEEEEcCC-CCEEEEEECCCcEEEEECCCCCce-------eeeecCCCCCCCCeE
Q 000836 1175 ---------------P-SSSDCSISALTASQVH-GGQLAAGFVDGSVRLYDVRTPDML-------VCSTRPHTQQVERVV 1230 (1262)
Q Consensus 1175 ---------------~-~hs~~~VtsLa~~s~~-g~lLatGs~DGsVrIWDlrs~~~~-------v~~~~~~~gH~~~V~ 1230 (1262)
. -|... +......++. ....++++.||.++||-....+.. .+....+ -|..+++
T Consensus 436 ~~n~~~kt~~L~T~I~~PH~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~ 513 (792)
T KOG1963|consen 436 QYNPNSKTFILNTKINNPHGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPIT 513 (792)
T ss_pred EEcCCcceeEEEEEEecCCCce-eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCccc
Confidence 0 12221 1111122222 337888999999999987332211 1111111 3678999
Q ss_pred EEEEecCCCCCEEEEecCCceEEEeccc
Q 000836 1231 GISFQPGLDPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1231 slafsp~~~g~~LaSgSdd~I~~WDLry 1258 (1262)
+.+|+.+ |..|+.+-++.|.+||...
T Consensus 514 a~~fs~d--Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQD--GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred chhhcCC--CcEEEEecCCEEEEecCCC
Confidence 9999999 8888888899999999765
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.2e-06 Score=91.74 Aligned_cols=169 Identities=22% Similarity=0.371 Sum_probs=121.8
Q ss_pred ccccccCCC---------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEeecCCCcE
Q 000836 1027 IACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSL 1096 (1262)
Q Consensus 1027 ~~~w~~~~~---------~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t-g~~l~~~~~h~~~~~~ItsL~fsn~~dg~l 1096 (1262)
...||.... .+|.++.+. ..++|+.- .+.|.||...+ -+.++.+.....+ .+..+++-. .+..+
T Consensus 77 viIWDD~k~~~i~el~f~~~I~~V~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~--~~k~~ 150 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELSFNSEIKAVKLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPT--SNKSL 150 (346)
T ss_pred EEEEecccCcEEEEEEeccceeeEEEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEeecCC--CCceE
Confidence 456776544 345555554 34677666 78999999984 4667777655422 234444432 33334
Q ss_pred EEE-EeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeeEee
Q 000836 1097 LLV-ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS-IMLWDLEKEQQMVNPI 1174 (1262)
Q Consensus 1097 LaT-gS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~-IrIWDlrs~~~~v~ti 1174 (1262)
|+- |..-|.|+|-|+...... +-..+..|.+.|.+ ++.+.+|..++++|..|+ |||||.+++. .++.+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~-----~p~~I~AH~s~Iac----v~Ln~~Gt~vATaStkGTLIRIFdt~~g~-~l~E~ 220 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPN-----APSIINAHDSDIAC----VALNLQGTLVATASTKGTLIRIFDTEDGT-LLQEL 220 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcC-----CceEEEcccCceeE----EEEcCCccEEEEeccCcEEEEEEEcCCCc-Eeeee
Confidence 443 556699999999762221 11356889999998 788899999999988876 7999999999 99998
Q ss_pred cCCCCC-CeeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000836 1175 PSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1262)
Q Consensus 1175 ~~hs~~-~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~ 1212 (1262)
..+.+. .|.+| .+++++.++++.+..|+|+||.++..
T Consensus 221 RRG~d~A~iy~i-aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 221 RRGVDRADIYCI-AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ecCCchheEEEE-EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 754432 59999 89999999999999999999988753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-07 Score=98.66 Aligned_cols=199 Identities=10% Similarity=0.059 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..++.|++.+..++++..+|.+.+-+..... .++.++.|. -.++..+|+ ..+.+++.+|++||.+..||++. +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He---~E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~-p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE---FEAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRI-P 198 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc---eeeeeeecc-cCCCceEEecCCCceEEEEEecC-C
Confidence 4578899999999999999999966665553 344788898 788889996 66779999999999999999985 2
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcC-CC-
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HG- 1192 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~-~g- 1192 (1262)
++ .+ |+..+-|...|.+ +.-+| ...+|++|+.|..|++||.|+..+++..-+.. + .|..+ ..+| ..
T Consensus 199 ~~--~i--~~n~kvH~~GV~S----I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-GVWRi-~~~p~~~~ 267 (339)
T KOG0280|consen 199 KT--FI--WHNSKVHTSGVVS----IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-GVWRI-KHHPEIFH 267 (339)
T ss_pred cc--ee--eecceeeecceEE----EecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-ceEEE-Eecchhhh
Confidence 22 22 5666678777877 54444 45689999999999999999544266555444 3 39999 4444 22
Q ss_pred CEEEEEECCCcEEEEECCCCCce-eeeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceE-EEe
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPS-FSD 1255 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~-v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~-~WD 1255 (1262)
.+++++-.+| .+|-+....... ...+..++.|.+-..+-.|... ...|+|++ +..++ +|-
T Consensus 268 ~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~--~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 268 RLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK--DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc--cceeeeeeccccceeeeee
Confidence 3444544444 677777654321 1233356677777777788544 56789877 44433 664
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-06 Score=101.37 Aligned_cols=184 Identities=10% Similarity=-0.019 Sum_probs=121.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCCe--EE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGN--IR 1107 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~---dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG~--Ir 1107 (1262)
+...+....|+|+|+.|+..+. +..|.+||+.+++.. .+..+. +.+....|+ +||+.|+ +.+.+|. |.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~---g~~~~~~~S--PDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP---GMTFAPRFS--PDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC---CcccCcEEC--CCCCEEEEEEecCCCceEE
Confidence 3456889999999998887653 468999999988653 344444 466788997 7887664 6666666 55
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeecCCCCCCeeE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-D--g~IrIWDlrs~~~~v~ti~~hs~~~Vts 1184 (1262)
+||... +.. +.+..+...... ..|+|++..++.+++ + ..|.+||+..+. .+.+..+... +..
T Consensus 274 ~~d~~~--~~~------~~Lt~~~~~~~~----~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~-~~~ 338 (435)
T PRK05137 274 TMDLRS--GTT------TRLTDSPAIDTS----PSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRISFGGGR-YST 338 (435)
T ss_pred EEECCC--Cce------EEccCCCCccCc----eeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEeecCCCc-ccC
Confidence 557654 332 234444444445 899999998887764 3 368888987765 3444433333 555
Q ss_pred EEEEcCCCCEEEEEECC---CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1185 LTASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~D---GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
. .|+++|+.++....+ ..|.+||+..+. .+.+ ... ..+....|+|+ |+.|+..+
T Consensus 339 ~-~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~l-t~~---~~~~~p~~spD--G~~i~~~~ 395 (435)
T PRK05137 339 P-VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERIL-TSG---FLVEGPTWAPN--GRVIMFFR 395 (435)
T ss_pred e-EECCCCCEEEEEEcCCCceEEEEEECCCCc--eEec-cCC---CCCCCCeECCC--CCEEEEEE
Confidence 6 789999988876643 357788875444 2222 221 24677899999 77766544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=114.28 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=124.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEE
Q 000836 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1262)
Q Consensus 1042 ~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lv 1121 (1262)
-++++.-++++|+--+.|.+|++...+.-..+.+|. +.|-++.|+ .||.++++.|+|.++|+|++.+ .+...
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHe---G~iF~i~~s--~dg~~i~s~SdDRsiRlW~i~s--~~~~~- 211 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHE---GSIFSIVTS--LDGRYIASVSDDRSIRLWPIDS--REVLG- 211 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccC---CceEEEEEc--cCCcEEEEEecCcceeeeeccc--ccccC-
Confidence 345666689999999999999998544444688999 899999997 8999999999999999999987 22211
Q ss_pred eeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECC
Q 000836 1122 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201 (1262)
Q Consensus 1122 sa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~D 1201 (1262)
.+.-+|...|+. +.+.+. .++++|.|-+.++|+....+ +..+..|....+..+ ..+.+....+|++.|
T Consensus 212 ---~~~fgHsaRvw~----~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~-~~~~~~~~~vT~g~D 279 (967)
T KOG0974|consen 212 ---CTGFGHSARVWA----CCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKI-AVPIGVIIKVTGGND 279 (967)
T ss_pred ---cccccccceeEE----EEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEE-EEcCCceEEEeeccC
Confidence 245689999988 888875 99999999999999776555 568888887779999 788888999999999
Q ss_pred CcEEEEECCC
Q 000836 1202 GSVRLYDVRT 1211 (1262)
Q Consensus 1202 GsVrIWDlrs 1211 (1262)
|.+++||+..
T Consensus 280 s~lk~~~l~~ 289 (967)
T KOG0974|consen 280 STLKLWDLNG 289 (967)
T ss_pred cchhhhhhhc
Confidence 9999999854
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=120.15 Aligned_cols=185 Identities=14% Similarity=0.221 Sum_probs=141.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..|.++.=||...+.+||+.||.|++|.|..++.+..+....+ ..|+.+.|+ ..|+.+..+..||.+.+|....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhc--ccCCceeeeccCCceeecccCC--
Confidence 4467778899999999999999999999999998888876553 789999997 7899999999999999999853
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE---eCCCeEEEEeCCCC--ceeeEeecCCCCCCeeEEEEEcC
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKE--QQMVNPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg---g~Dg~IrIWDlrs~--~~~v~ti~~hs~~~VtsLa~~s~ 1190 (1262)
+.. ...+.|...... +.|-. ..++++ ++++.+.+||.-.. ..++. .+|.++ ++++ .+-|
T Consensus 2283 ---k~~---~s~qchnk~~~D----f~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l-~~~P 2346 (2439)
T KOG1064|consen 2283 ---KPY---TSWQCHNKALSD----FRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVL-AYAP 2346 (2439)
T ss_pred ---cce---eccccCCccccc----eeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEE-EEcC
Confidence 222 345567666666 33432 444544 45789999996543 22555 667776 9999 8888
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
...+|++|+.+|.|++||+|..+ +.+.++. ++ . ..++++|+ ++.+++|++.-
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrq-l~h~~~~------------~~-~--~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA------------LD-T--REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHH-HHHHhhh------------hh-h--hheeeccCcccceEEEEccc
Confidence 99999999999999999999766 4433321 33 3 55788887 67999999753
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-08 Score=119.31 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=103.0
Q ss_pred eeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcE
Q 000836 1125 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1204 (1262)
Q Consensus 1125 ~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsV 1204 (1262)
+.+.+|...|.| +.|.+.|.++++|++|..|+||..+++. |+.+.++|++. |+.+ +.+.+..++++++.|..|
T Consensus 184 krLlgH~naVyc----a~fDrtg~~Iitgsdd~lvKiwS~et~~-~lAs~rGhs~d-itdl-avs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYC----AIFDRTGRYIITGSDDRLVKIWSMETAR-CLASCRGHSGD-ITDL-AVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHhhhhheee----eeeccccceEeecCccceeeeeeccchh-hhccCCCCccc-cchh-ccchhhhhhhhcccCceE
Confidence 567789999998 8899999999999999999999999999 99999999997 9999 777788899999999999
Q ss_pred EEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1205 rIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
++|-++.+. ++. ...||++.|++++|+|- . .|+.+|++++||.|
T Consensus 257 rvWrl~~~~-pvs---vLrghtgavtaiafsP~--~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 257 RVWRLPDGA-PVS---VLRGHTGAVTAIAFSPR--A---SSSDDGTCRIWDAR 300 (1113)
T ss_pred EEEecCCCc-hHH---HHhccccceeeeccCcc--c---cCCCCCceEecccc
Confidence 999999887 443 44588899999999999 3 34446699999988
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=93.68 Aligned_cols=193 Identities=16% Similarity=0.152 Sum_probs=132.3
Q ss_pred CCcEEEEECCCCcEEE--EeeCCCCCCCCeEEEEEeec-CCCc-EEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCC
Q 000836 1056 NERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNE-LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1131 (1262)
Q Consensus 1056 dg~I~VWD~~tg~~l~--~~~~h~~~~~~ItsL~fsn~-~dg~-lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~ 1131 (1262)
.|.+.+|+++..+.+. .++... -+.+..+.|... .++. .++-+..+|.|.+|........ . .++.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d--ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~--~L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD--TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--V--HLRGLSSKK 118 (339)
T ss_pred ccceEEEeecccccCccceeeeec--ccccceeeeeeccCCccceeeeccccceEEEEeeccceee--e--eecccchhh
Confidence 4678889888654332 222211 146778888643 3455 5677788999999998651111 1 123333332
Q ss_pred CcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000836 1132 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1132 ~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
..+. ..++++|++.+..++++-.+|.+.+-+..... +.+++.+.|.-. +....+...+.+++.+|+.||.+..||+|
T Consensus 119 i~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 ISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEec
Confidence 2222 24568999999999999888888855543332 134567777665 55553445567899999999999999999
Q ss_pred CCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecccc
Q 000836 1211 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIYF 1259 (1262)
Q Consensus 1211 s~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLryf 1259 (1262)
.+. ...++..+.|...|.++.-+|. .+.++++|+ ++.|++||.|.+
T Consensus 197 ~p~--~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 197 IPK--TFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred CCc--ceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcc
Confidence 655 3445556678899999999887 688999999 559999999965
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-06 Score=95.96 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=96.1
Q ss_pred CCcccchhHHHhccc--hhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhh-cCCCchhHHHHHHHHHHHHhccChhh
Q 000836 459 PPEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKL-LQTTTPELRQILVFIWTKILALDKSC 535 (1262)
Q Consensus 459 pp~~lPiVLqvLlS~--~~rlral~lL~~fld~gpwAv~lals~gifpyvlkL-Lqs~~~elr~~lvFIwa~il~~d~~~ 535 (1262)
.+..++.+.+++.++ ..|.-|+..|+.+=+-.. . ..-.+|.+..+ ++++..++|..++..++.++.....-
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~ 125 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY 125 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc
Confidence 355666777766664 345556666666432110 0 11245555555 56666777777777777765433222
Q ss_pred hhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHH
Q 000836 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1262)
Q Consensus 536 Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1262)
+ ......+...+.+++ ++.|..++..|+.+- ...++..++..|+ |+++.||.|++
T Consensus 126 ~-----~~a~~~l~~~~~D~~--~~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~-------d~~~~VR~~A~ 180 (280)
T PRK09687 126 S-----PKIVEQSQITAFDKS--TNVRFAVAFALSVIN-----------DEAAIPLLINLLK-------DPNGDVRNWAA 180 (280)
T ss_pred c-----hHHHHHHHHHhhCCC--HHHHHHHHHHHhccC-----------CHHHHHHHHHHhc-------CCCHHHHHHHH
Confidence 1 122233444444443 466777777775432 2345677777777 67777777777
Q ss_pred HHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhc
Q 000836 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~ 663 (1262)
.+||++-.+.+ .+...|..+|.|+.++||.+++.+||.+
T Consensus 181 ~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 181 FALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 77777722222 2233577777777777777777777764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.6e-06 Score=100.17 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEe---eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSF---DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l-~~~---~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
..++.+++.|.+.+..- +..+.+|+..++... ... ..|. ..+++.+++ +.++++++|..||.|.+|+...
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Ht---f~~t~~~~s--pn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHT---FNITCVALS--PNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhc---ccceeEEec--cccceEEEeccCCcEEEEeccc
Confidence 56788888888766665 677899999875411 111 2244 458999997 8999999999999999998754
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
.++... ..+.+.-|...|.+ +.|+.+|.+|++||..+.+.+|.+.+++ -+-++-- ++.|..+ .+++++.
T Consensus 237 ~~~~~~---t~t~lHWH~~~V~~----L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRL-gs~I~~i-~vS~ds~ 305 (792)
T KOG1963|consen 237 SSDDSE---TCTLLHWHHDEVNS----LSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRL-GSPILHI-VVSPDSD 305 (792)
T ss_pred cccccc---cceEEEecccccce----eEEecCCceEeecccceEEEEEeecCCC--ccccccc-CCeeEEE-EEcCCCC
Confidence 112111 12456678888988 9999999999999999999999999887 2223333 3349999 7889999
Q ss_pred EEEEEECCCcEEEEECCCCCceeeeecCCC--------CCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1194 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--------QQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~~~v~~~~~~~--------gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
+.+....|.+|.+-...+.. ....+.... +..+-.+.++++|. -+..+..|-.+.+.++|+
T Consensus 306 ~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEecCceEEEEeccchh-hhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEec
Confidence 99999999999998775433 111111111 12455788899996 233444444558888886
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-05 Score=94.12 Aligned_cols=182 Identities=10% Similarity=0.040 Sum_probs=118.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCC--eEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1109 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~d---g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG--~IrIW 1109 (1262)
..+....|+|+|++|+.+..+ ..|.+||+.+++... +..+. +.+.++.|+ +|++.|+ +.+.+| .|.+|
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~---~~~~~~~~s--pDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFP---GMNGAPAFS--PDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCC---CCccceEEC--CCCCEEEEEECCCCCccEEEE
Confidence 347778899999999887643 479999999875433 23333 455678997 7887665 555555 47777
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg--~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
|... +.. +.+..+...... ..|++++..|+.+++ .+ .|.+||+.+++ . ..+..+... +...
T Consensus 264 d~~~--~~~------~~l~~~~~~~~~----~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~-~~l~~~~~~-~~~~- 327 (417)
T TIGR02800 264 DLDG--KQL------TRLTNGPGIDTE----PSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-V-RRLTFRGGY-NASP- 327 (417)
T ss_pred ECCC--CCE------EECCCCCCCCCC----EEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEeecCCCC-ccCe-
Confidence 8765 322 223333333334 789999998877654 23 58888887766 3 344433333 5666
Q ss_pred EEcCCCCEEEEEECCC---cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1187 ASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~DG---sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
.++++|..++.++.++ .|.+||+.++. . ..+ ... .......|+|+ ++.|+.++
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~-~~l-~~~---~~~~~p~~spd--g~~l~~~~ 383 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGG-E-RVL-TDT---GLDESPSFAPN--GRMILYAT 383 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCC-e-EEc-cCC---CCCCCceECCC--CCEEEEEE
Confidence 7889999998888775 78889988754 2 222 111 12345689999 77776665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-06 Score=97.82 Aligned_cols=236 Identities=20% Similarity=0.308 Sum_probs=166.0
Q ss_pred cchhHHHhccch--hHHHHHHHHHHHhcCC--HHHHHHHHhcCChhhhhhhcC-CCchhHHHHHHHHHHHHhccChhhhh
Q 000836 463 LPIVLQVLLSQC--HRFRALVLLGRFLDMG--PWAVDLALSVGIFPYVLKLLQ-TTTPELRQILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 463 lPiVLqvLlS~~--~rlral~lL~~fld~g--pwAv~lals~gifpyvlkLLq-s~~~elr~~lvFIwa~il~~d~~~Q~ 537 (1262)
++..++.+.|.. .+++|..-+.+.+... ||- ..++..|+.|-+++.|. ...++++-=++|.+++|.+....-=+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi-~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPI-DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCH-HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 445566666633 3666666444444333 443 45555699999999996 44578888899999999998643223
Q ss_pred hhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhc------------------------------
Q 000836 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAG------------------------------ 587 (1262)
Q Consensus 538 dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~------------------------------ 587 (1262)
..+..+-...|+..|.+++. ..+--|.|.|+-+.-+-+.-+..|++.|
T Consensus 147 ~vv~agavp~fi~Ll~s~~~--~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSA--DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccCCchHHHHHHhcCCcH--HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 45667778889999976553 3333344444444333333344444444
Q ss_pred -------------hHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHH
Q 000836 588 -------------LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654 (1262)
Q Consensus 588 -------------~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRa 654 (1262)
++..+..+|. +.+++|.+=+|-+|+.|-.+.++.-++.++.++..+|..+|..+++-|+.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~-------~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLH-------STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 4455555555 67889998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhcc-CCChhhHHHHHHHHHHHHHh
Q 000836 655 SAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS-DGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 655 a~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~-D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.++-++|+++ .+.+.+.+.-+.......|..++. -...-.|||++|.+|-+...
T Consensus 298 PaLRaiGNIv--------------tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 298 PALRAIGNIV--------------TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred HHHhhcccee--------------eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 9999999987 223333344556666777777766 55566999999999987754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-06 Score=95.17 Aligned_cols=189 Identities=17% Similarity=0.198 Sum_probs=133.6
Q ss_pred hHHHhccchh--HHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccc
Q 000836 466 VLQVLLSQCH--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDG 543 (1262)
Q Consensus 466 VLqvLlS~~~--rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~ 543 (1262)
++.+|-.... |.+|+..|..+ | +.-+|+.+.+|+++..+++|..++.+++.|=.-+ ..|. .
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~---~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-----~ 90 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLR---G--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-----N 90 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhc---C--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH-----H
Confidence 4555544443 56666664322 2 2446888899999999999999999998863322 2221 2
Q ss_pred cHHHHHHh-hcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhh
Q 000836 544 GHAYFIRF-LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 544 ~~~yf~~~-L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1262)
-+..+... +++++ ++.|+.++-.|+.++...... ...+++.+...+. |+++.||..++.+||++-
T Consensus 91 a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~-------D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 91 VFNILNNLALEDKS--ACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF-------DKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHhccccccccc-----chHHHHHHHHHhh-------CCCHHHHHHHHHHHhccC
Confidence 23344444 45555 589999999999987554322 2335566777777 889999999999999764
Q ss_pred cCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhcc
Q 000836 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS 702 (1262)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~ 702 (1262)
.. .+...|+.+|+|+.+.||.+++++||.+- .. ...+...|+..+.
T Consensus 157 ~~-----------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~----------------------~~~~~~~L~~~L~ 202 (280)
T PRK09687 157 DE-----------AAIPLLINLLKDPNGDVRNWAAFALNSNK-YD----------------------NPDIREAFVAMLQ 202 (280)
T ss_pred CH-----------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CC----------------------CHHHHHHHHHHhc
Confidence 32 24458999999999999999999999982 10 0123355777779
Q ss_pred CCChhhHHHHHHHHHHH
Q 000836 703 DGSPLVRAEVAVALARF 719 (1262)
Q Consensus 703 D~sp~VR~E~~~~ls~~ 719 (1262)
|..+.||++++++|.++
T Consensus 203 D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 203 DKNEEIRIEAIIGLALR 219 (280)
T ss_pred CCChHHHHHHHHHHHcc
Confidence 99999999999999864
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-06 Score=82.12 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=107.3
Q ss_pred hhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Q 000836 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1262)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~L 618 (1262)
.++.++++.++.+|.+.+ +..|.-++.+|+.++.+.+.......+.++++.++++|+ ++++.+|..++.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-------SEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 456788999999998776 588999999999999999998888889999999999999 78999999999999
Q ss_pred HhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
++|..+.+......++.++...+..++++++..||..++++|+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888888888899999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.9e-06 Score=96.38 Aligned_cols=159 Identities=17% Similarity=0.275 Sum_probs=111.6
Q ss_pred CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEE
Q 000836 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~Ir 1160 (1262)
..|..++|- +||..|+.+..| .+.|||..+ |.. .+++++|...|++ ++|+.+|..+++|+.|+.|.
T Consensus 13 hci~d~afk--PDGsqL~lAAg~-rlliyD~nd--G~l-----lqtLKgHKDtVyc----VAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 13 HCINDIAFK--PDGTQLILAAGS-RLLVYDTSD--GTL-----LQPLKGHKDTVYC----VAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred cchheeEEC--CCCceEEEecCC-EEEEEeCCC--ccc-----ccccccccceEEE----EEEccCCceeccCCCceeEE
Confidence 378999995 899888777644 789999976 443 3789999999999 99999999999999999999
Q ss_pred EEeCCCCc-------eeeEeec---------------------------CC-CCCCeeEEEEEcCCCCEEEEEECCCcEE
Q 000836 1161 LWDLEKEQ-------QMVNPIP---------------------------SS-SDCSISALTASQVHGGQLAAGFVDGSVR 1205 (1262)
Q Consensus 1161 IWDlrs~~-------~~v~ti~---------------------------~h-s~~~VtsLa~~s~~g~lLatGs~DGsVr 1205 (1262)
+|.-.-+- ..++.+. .+ ....|.++ +|..+|.+|+.|-.||+|.
T Consensus 79 ~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~C-sWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 79 IWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICC-SWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred EecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEe-eecCCCcEEEEeccCceEE
Confidence 99865432 0111110 01 11125555 7888999999999999999
Q ss_pred EEECCCCCceeeeecCCCCCCCCeEEEEEecCCC---CCEEEEecCC-ceEEEec
Q 000836 1206 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD---PAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1206 IWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~---g~~LaSgSdd-~I~~WDL 1256 (1262)
|-+.. ++..+.. ....|.+++|.+++|+|.++ ...++....+ ++.|+.+
T Consensus 158 iRNk~-gEek~~I-~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L 210 (1081)
T KOG1538|consen 158 IRNKN-GEEKVKI-ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL 210 (1081)
T ss_pred eecCC-CCcceEE-eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe
Confidence 88654 3323333 24456789999999999832 1234444433 5555443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-05 Score=93.27 Aligned_cols=171 Identities=9% Similarity=0.035 Sum_probs=113.3
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC---CCeEEEEEcCCCCCcceEEeeeeeccCCCCc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~---DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~ 1133 (1262)
..|.+||.. +.....+..+. ..+.+..|+ +||+.|+..+. +..|.+||+.. +.... +..+...
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~---~~v~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~--g~~~~------l~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS---SLVLTPRFS--PNRQEITYMSYANGRPRVYLLDLET--GQREL------VGNFPGM 247 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC---CCeEeeEEC--CCCCEEEEEEecCCCCEEEEEECCC--CcEEE------eecCCCc
Confidence 478899986 44445566666 689999998 89988887663 46899999976 44322 2333334
Q ss_pred ccccceeEEEcCCCCEEEEE-eCCCe--EEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--cEEEE
Q 000836 1134 VRCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLY 1207 (1262)
Q Consensus 1134 V~sv~l~v~wsp~~~~Llsg-g~Dg~--IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DG--sVrIW 1207 (1262)
+.. ..|+|+|..|+.+ +.++. |.+||+.++. +..+..+... .+.. .|+++|+.++..+. +| .|.+|
T Consensus 248 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~-~~~~-~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFA----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAI-DTSP-SYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccC----cEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCc-cCce-eEcCCCCEEEEEECCCCCCeEEEE
Confidence 445 8899999987654 44544 7778988876 4455544443 5556 78999998887664 33 57777
Q ss_pred ECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC--C--ceEEEec
Q 000836 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK--C--LPSFSDL 1256 (1262)
Q Consensus 1208 Dlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd--d--~I~~WDL 1256 (1262)
|+..++ . ..+ .. +...+....|+|+ |+.|+..+. + .+.+||+
T Consensus 320 d~~g~~-~-~~l-t~--~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 320 NADGSN-P-RRI-SF--GGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred ECCCCC-e-EEe-ec--CCCcccCeEECCC--CCEEEEEEcCCCceEEEEEEC
Confidence 876554 2 222 11 1344667889999 777766542 2 5667775
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.7e-05 Score=90.64 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=114.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCC--eEEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRI 1108 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~d---g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG--~IrI 1108 (1262)
+..+....|+|+|+.|+..+.+ ..|.+||+.+++... +.... +.+....|+ +||+.|+ +.+.+| .|.+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~S--pDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAWS--PDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEEC--CCCCEEEEEEccCCCceEEE
Confidence 3457888999999988776533 369999999886533 22222 344568897 7888776 555566 5777
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-D--g~IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
||... +.. +.+..+...... ..|+|++..++.+++ + ..|.++|+.+++ .. .+...... ....
T Consensus 272 ~d~~~--~~~------~~lt~~~~~~~~----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~-~lt~~~~~-~~~~ 336 (430)
T PRK00178 272 MDLAS--RQL------SRVTNHPAIDTE----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AE-RVTFVGNY-NARP 336 (430)
T ss_pred EECCC--CCe------EEcccCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCC-ccce
Confidence 78765 332 223333333444 789999998877654 3 357778887776 33 22221121 2334
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1186 TASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1186 a~~s~~g~lLatGs~D-G--sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
.++++|+.++....+ | .|.+||+.+++. +.+ ... .......|+|+ |+.++.++
T Consensus 337 -~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~l-t~~---~~~~~p~~spd--g~~i~~~~ 392 (430)
T PRK00178 337 -RLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RIL-TDT---SLDESPSVAPN--GTMLIYAT 392 (430)
T ss_pred -EECCCCCEEEEEEccCCceEEEEEECCCCCE--EEc-cCC---CCCCCceECCC--CCEEEEEE
Confidence 678999988776643 3 578889887652 222 111 12235689999 77776555
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=9e-07 Score=114.60 Aligned_cols=152 Identities=16% Similarity=0.319 Sum_probs=123.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe---CCCeEEEEEcC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---CNGNIRIWKDY 1112 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS---~DG~IrIWD~~ 1112 (1262)
.+|+.+.|+..|+....++.||.+.+|... .+.....+.|+ ...+++.|. +..+++++ .++.+.+||.-
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn---k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN---KALSDFRFI----GSLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC---ccccceeee----ehhhhccccCCCCCcccchhcc
Confidence 557778999999999999999999999998 66777788998 888999997 26777764 57899999987
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. .+...++ -..|.+.++. +.+-|....+++||.+|.|++||++..+ .+++++. ++ ..
T Consensus 2324 ~-~~~~s~v-----~~~H~~gaT~----l~~~P~~qllisggr~G~v~l~D~rqrq-l~h~~~~-----------~~-~~ 2380 (2439)
T KOG1064|consen 2324 L-PPMNSLV-----HTCHDGGATV----LAYAPKHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA-----------LD-TR 2380 (2439)
T ss_pred c-Cccccee-----eeecCCCceE----EEEcCcceEEEecCCcCcEEEeehHHHH-HHHHhhh-----------hh-hh
Confidence 5 2333333 2678888887 8899999999999999999999999988 7777754 23 56
Q ss_pred CEEEEEECCCcEEEEECCCCCceeeee
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
.+|++|+..|.++||++.... ....+
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~-ll~~~ 2406 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFG-LLHTF 2406 (2439)
T ss_pred heeeccCcccceEEEEccccc-hhhcC
Confidence 799999999999999998764 44333
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-05 Score=88.37 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=118.4
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCC
Q 000836 1051 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130 (1262)
Q Consensus 1051 asgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h 1130 (1262)
++-..+|.|.|.|..+.+.+.++..+. ..-..+.|+ +||+++.+++.||.|.++|+.+ . +++ +.++..
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s--~Dgr~~yv~~rdg~vsviD~~~--~--~~v---~~i~~G 77 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKFS--PDGRYLYVANRDGTVSVIDLAT--G--KVV---ATIKVG 77 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-T--T-SSEEEEEETTSEEEEEETTS--S--SEE---EEEE-S
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEec--CCCCEEEEEcCCCeEEEEECCc--c--cEE---EEEecC
Confidence 455568999999999999999998765 333446675 8999999999999999999977 2 234 222221
Q ss_pred CCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeEeecCCC------CCCeeEEEEEcCCCCEEEEEEC-CC
Q 000836 1131 KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS------DCSISALTASQVHGGQLAAGFV-DG 1202 (1262)
Q Consensus 1131 ~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~~~~v~ti~~hs------~~~VtsLa~~s~~g~lLatGs~-DG 1202 (1262)
....+ ++++++|.+++++. ..+.+.++|.++.+ .++.++... .+.+.++ ..++....++..-. .|
T Consensus 78 -~~~~~----i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aI-v~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 78 -GNPRG----IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAI-VASPGRPEFVVNLKDTG 150 (369)
T ss_dssp -SEEEE----EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEE-EE-SSSSEEEEEETTTT
T ss_pred -CCcce----EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeE-EecCCCCEEEEEEccCC
Confidence 12344 88899999999885 58999999999999 999887642 2236777 55666775665555 48
Q ss_pred cEEEEECCCCCcee-eeecCCCCCCCCeEEEEEecCCCCCEEEEec--CCceEEEecc
Q 000836 1203 SVRLYDVRTPDMLV-CSTRPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDLI 1257 (1262)
Q Consensus 1203 sVrIWDlrs~~~~v-~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--dd~I~~WDLr 1257 (1262)
.|-+-|....+.+. ..+ . .........|+|+ +++++.+. .+.+.++|..
T Consensus 151 ~I~vVdy~d~~~~~~~~i-~---~g~~~~D~~~dpd--gry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTI-K---VGRFPHDGGFDPD--GRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EEEEEETTTSSCEEEEEE-E-----TTEEEEEE-TT--SSEEEEEEGGGTEEEEEETT
T ss_pred eEEEEEeccccccceeee-c---ccccccccccCcc--cceeeecccccceeEEEeec
Confidence 88888877654332 222 1 1346778999999 88776654 4577777754
|
... |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.4e-06 Score=80.16 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=107.4
Q ss_pred HHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCC
Q 000836 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1262)
Q Consensus 497 als~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~ 576 (1262)
.++.|++++++++|++...++|.-+++++++++..++.+....++.++++.++.+|.+.+ ++.+.-|+.+|+.|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCc
Confidence 357899999999999988999999999999999998888888899999999999998865 588999999999999999
Q ss_pred hhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhh
Q 000836 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 577 ~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1262)
+.......+.|++..++++|+ +.+..+|.-++.+|++|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~-------~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLD-------SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHh-------cCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999 778999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.3e-06 Score=94.70 Aligned_cols=167 Identities=10% Similarity=0.102 Sum_probs=120.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCC-cE--EEEEeCCCeEEEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SL--LLVASCNGNIRIWK 1110 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg-~l--LaTgS~DG~IrIWD 1110 (1262)
|...|.++.|+|||+.|++-+.| ..+||+..+|..+....... .......+.|+...++ .+ ++.-..-|.|+.||
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc-cchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence 56789999999999999998877 99999999997766554322 1145677888722222 22 23334557888888
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecC-CCCCCeeEEEEEc
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQ 1189 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~-hs~~~VtsLa~~s 1189 (1262)
+...++. .... ++........|.+ ++.+.+|.+++.|+.||.|-|++..+.+ +++-++. |.. .||.+ .|.
T Consensus 263 ~~~w~~~-~~l~-~~~~~~~~~siSs----l~VS~dGkf~AlGT~dGsVai~~~~~lq-~~~~vk~aH~~-~VT~l-tF~ 333 (398)
T KOG0771|consen 263 ISLWSGS-NFLR-LRKKIKRFKSISS----LAVSDDGKFLALGTMDGSVAIYDAKSLQ-RLQYVKEAHLG-FVTGL-TFS 333 (398)
T ss_pred eeeeccc-cccc-hhhhhhccCccee----EEEcCCCcEEEEeccCCcEEEEEeceee-eeEeehhhhee-eeeeE-EEc
Confidence 8653332 1111 1111122234666 8889999999999999999999999988 8877764 555 49999 889
Q ss_pred CCCCEEEEEECCCcEEEEECCC
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs 1211 (1262)
|+.+++++-+.|....|..+.-
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcCcccccccCCceeEEEEee
Confidence 9999999999998888887654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.6e-06 Score=90.20 Aligned_cols=214 Identities=14% Similarity=0.229 Sum_probs=139.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeeCCCCC---------CCCeEEEEEeecCCCcEEEEEe
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT-----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~-----~l~~~~~h~~~---------~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
..|+++.|...|.+|++|+..|.|.+|.-+... ....|++|..+ ...|..+.|..+...+.++...
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 569999999999999999999999999876532 23346666532 2468889997444446777788
Q ss_pred CCCeEEEEEcCCCCCcceEEee-------------------------------------eeec-cCCCCcccccceeEEE
Q 000836 1102 CNGNIRIWKDYDQKDKQKLVTA-------------------------------------FSSI-QGHKPGVRCSNVVVDW 1143 (1262)
Q Consensus 1102 ~DG~IrIWD~~~~~g~~~lvsa-------------------------------------~~~l-~~h~~~V~sv~l~v~w 1143 (1262)
.|.+|++|.++.. ..+++.. -+.. ..|...+++ +.+
T Consensus 107 NdktiKlWKiyek--nlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS----iS~ 180 (460)
T COG5170 107 NDKTIKLWKIYEK--NLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS----ISF 180 (460)
T ss_pred CCceeeeeeeecc--cchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee----eee
Confidence 9999999999862 1111100 0111 234444555 677
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce--eeEeecCCCCC----CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee-
Q 000836 1144 QQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC----SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV- 1216 (1262)
Q Consensus 1144 sp~~~~Llsgg~Dg~IrIWDlrs~~~--~v~ti~~hs~~----~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v- 1216 (1262)
+.+...++ +++|=.|.+|++.-... -+..+..|... .|++..+.+...++|.-.+..|.|++-|+|....+.
T Consensus 181 NsD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 181 NSDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred cCchheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 66555555 45677899999876542 23333333321 255553333456788888889999999999533111
Q ss_pred --eeec---------CCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEeccc
Q 000836 1217 --CSTR---------PHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1217 --~~~~---------~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLry 1258 (1262)
..+. .+.+-...|..+.|+++ |+++++-+-.++++||++-
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdyltvkiwDvnm 310 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDYLTVKIWDVNM 310 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEeccceEEEEeccc
Confidence 0000 01122356889999999 9999988877999999864
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-06 Score=97.60 Aligned_cols=213 Identities=11% Similarity=0.132 Sum_probs=149.8
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEe---eCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1032 TRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSF---DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~l~~~---~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
.+|.++|..++.-|+.+ -+.+++.|+.+.=.|+..+.....+ .++.+..-...+++.. +.+...+++|+.|-.+|
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~-P~nt~~faVgG~dqf~R 307 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD-PRNTNEFAVGGSDQFAR 307 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC-CCCccccccCChhhhhh
Confidence 45778899999999776 5778999999999999876443332 2233111245677774 66777999999999999
Q ss_pred EEEcCCCCCcceEEeeeeec-cCC-----CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------ee
Q 000836 1108 IWKDYDQKDKQKLVTAFSSI-QGH-----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----------QM 1170 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l-~~h-----~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~-----------~~ 1170 (1262)
|||.+.-..+. .......+ ..| .-.|++ +.|+.+++.++++-.|-.|.++.-..+. ..
T Consensus 308 vYD~R~~~~e~-~n~~~~~f~p~hl~~d~~v~ITg----l~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 308 VYDQRRIDKEE-NNGVLDKFCPHHLVEDDPVNITG----LVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhcccchhhcc-ccchhhhcCCccccccCccccee----EEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 99987522210 00001111 111 233566 8899889999999888889998433322 02
Q ss_pred eEe-ecCCCCC-CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC
Q 000836 1171 VNP-IPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK 1248 (1262)
Q Consensus 1171 v~t-i~~hs~~-~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd 1248 (1262)
+.. +++|... .|..+-+|-|...++++|+.-|.|-|||..+++ +++.+. +-..-|+|+.=||. -..|+|++-
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~Me---gDr~VVNCLEpHP~--~PvLAsSGi 456 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFME---GDRHVVNCLEPHPH--LPVLASSGI 456 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhh---cccceEeccCCCCC--CchhhccCC
Confidence 333 6677654 477777888899999999999999999998877 555543 22348999999999 788999884
Q ss_pred C-ceEEEec
Q 000836 1249 C-LPSFSDL 1256 (1262)
Q Consensus 1249 d-~I~~WDL 1256 (1262)
+ .|++|-.
T Consensus 457 d~DVKIWTP 465 (559)
T KOG1334|consen 457 DHDVKIWTP 465 (559)
T ss_pred ccceeeecC
Confidence 4 9999975
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=89.13 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=110.1
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe---CCCeEEEEEcCCCCCcceEEeeeeeccCCCC
Q 000836 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1262)
Q Consensus 1056 dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS---~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~ 1132 (1262)
...|.+||...... ..+..+. ..+.+..|+ +||+.|+..+ .+..|.+|++.. ++.+.+ ..+.++
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l---~~~~~~-- 244 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWS--PDGSKLAYVTFESGRSALVIQTLAN--GAVRQV---ASFPRH-- 244 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEEc--CCCCEEEEEEecCCCcEEEEEECCC--CCeEEc---cCCCCC--
Confidence 34789999875433 3344444 578999998 8998887654 245788999865 443322 122222
Q ss_pred cccccceeEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECC-CcEEEE-
Q 000836 1133 GVRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRLY- 1207 (1262)
Q Consensus 1133 ~V~sv~l~v~wsp~~~~Llsg-g~Dg--~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~D-GsVrIW- 1207 (1262)
+.. +.|+|+|..|+.. +.++ .|.+||+.+++ .. .+..+... +... .|+++|+.|+..+.+ |...||
T Consensus 245 -~~~----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~-~lt~~~~~-~~~~-~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 -NGA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRSN-NTEP-TWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -cCC----eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EccCCCCC-cCce-EECCCCCEEEEEeCCCCCceEEE
Confidence 334 7999999988866 3344 58899998877 43 44433333 6677 789999988777654 555555
Q ss_pred -ECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CC---ceEEEecc
Q 000836 1208 -DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KC---LPSFSDLI 1257 (1262)
Q Consensus 1208 -Dlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd---~I~~WDLr 1257 (1262)
|+.+++ ...+ ... ........|+|+ |+.|+..+ ++ .+.+||+.
T Consensus 316 ~d~~~g~--~~~l-t~~--~~~~~~~~~SpD--G~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 316 VNINGGA--PQRI-TWE--GSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred EECCCCC--eEEe-ecC--CCCccCEEECCC--CCEEEEEEccCCCceEEEEECC
Confidence 555444 2222 221 234567899999 77776654 22 57778763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=88.06 Aligned_cols=159 Identities=17% Similarity=0.328 Sum_probs=116.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.|...|..+-|+-....+++.+.|..+.---.+.+..+..+.-.. .-+++.+. -.+...|...|.|.+-++.
T Consensus 112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----~~t~~~~d----~~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 112 AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----PASALQFD----ALYAFVGDHSGQITMLKLE 183 (404)
T ss_pred hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----cCCCCcee----eEEEEecccccceEEEEEe
Confidence 455678889998888899999887776544455555554432222 22233332 1255666677777777765
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
. ....++ .++.+|...+.+ +.|.+..+.+++|..|..|.+||+.-.+.......+|.+. |..+ +.-..-
T Consensus 184 ~--~~~~~i---~~~~~h~~~~~~----l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k-V~~l-~~~~~t 252 (404)
T KOG1409|consen 184 Q--NGCQLI---TTFNGHTGEVTC----LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK-VQAL-SYAQHT 252 (404)
T ss_pred e--cCCceE---EEEcCcccceEE----EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh-hhhh-hhhhhh
Confidence 4 333333 677899999998 9999999999999999999999997766345667788776 8888 666677
Q ss_pred CEEEEEECCCcEEEEECC
Q 000836 1193 GQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlr 1210 (1262)
..+.+++.||.|-+||..
T Consensus 253 ~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eeeeeccCCCeEEEEecc
Confidence 889999999999999985
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=80.26 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=129.1
Q ss_pred EEEEcC-----CCCEEEEEeCCCcEEEEECCCCcEEE-EeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1040 TALLQP-----FSPIVVAADENERIKIWNYEEDTLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1040 sl~fsp-----dg~~Lasgs~dg~I~VWD~~tg~~l~-~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
.|.|-| ...+|+.|+..|...+|...+.+... ....++ ..|+-+.=. -....-+..++.|.++++.++..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r~-cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKRY-CDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccc---cchhhhhhh-cccccceeeccCCcceeEEEEec
Confidence 455555 34589999999999999998764332 223333 223222110 01233566778899999998865
Q ss_pred CCCcceEEeeeeeccCCCCc--ccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-ecC-CCCCCeeEEEEEc
Q 000836 1114 QKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPS-SSDCSISALTASQ 1189 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~--V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t-i~~-hs~~~VtsLa~~s 1189 (1262)
+..+ ..-|... +.+ +.+++++..+.+.|+...|-.|.+..+.+.+.. ... .++. -.+. +|+
T Consensus 148 --~s~~-------~~~h~~~~~~ns----~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~-gF~~-S~s 212 (344)
T KOG4532|consen 148 --DSNK-------FAVHNQNLTQNS----LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH-GFYN-SFS 212 (344)
T ss_pred --Cccc-------ceeeccccceee----eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC-ceee-eec
Confidence 2111 1223332 444 788999999999999999999988765522322 222 2222 3455 678
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCceeeee-cCCCCCCCCeEEEEEecCCCCCEEEEecCC--ceEEEecccc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCST-RPHTQQVERVVGISFQPGLDPAKVNGTPKC--LPSFSDLIYF 1259 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v~~~-~~~~gH~~~V~slafsp~~~g~~LaSgSdd--~I~~WDLryf 1259 (1262)
.....||+++.||++.|||+|....+.... ..-..|++.+..+.|++. |..-|+--+++ .+.+-|+|.+
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~-g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY-GLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC-CcceEEEEecCcceEEEEEcccC
Confidence 888999999999999999999765332211 122348899999999987 44445555554 7778888754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-05 Score=91.59 Aligned_cols=172 Identities=11% Similarity=0.006 Sum_probs=111.2
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCCCcceEEeeeeeccCCCCc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~ 1133 (1262)
..|.+||.. +.....+..+. ..+.+..|+ +||+.|+.++.+ ..|.+||+.. ++...+ ......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~---~~v~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~--g~~~~l------~~~~g~ 249 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA---EPILSPAWS--PDGKKLAYVSFERGRSAIYVQDLAT--GQRELV------ASFRGI 249 (433)
T ss_pred EEEEEECCC-CCCceEeecCC---CccccccCC--CCCCEEEEEecCCCCcEEEEEECCC--CCEEEe------ccCCCC
Confidence 468999986 44444555555 678899997 899988877643 4699999965 443222 222222
Q ss_pred ccccceeEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCc--EEEE
Q 000836 1134 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLY 1207 (1262)
Q Consensus 1134 V~sv~l~v~wsp~~~~Llsg-g~Dg--~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DGs--VrIW 1207 (1262)
... ..|+|+|..++.+ +.++ .|.+||+.+++ +..+..+... .... .|+++|+.++.++. +|. |.++
T Consensus 250 ~~~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGA----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccC----ceECCCCCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEE
Confidence 333 7899999988654 4444 69999998877 4445544432 4566 78999998887764 455 5556
Q ss_pred ECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CC---ceEEEecc
Q 000836 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KC---LPSFSDLI 1257 (1262)
Q Consensus 1208 Dlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd---~I~~WDLr 1257 (1262)
|+.+++ . ..+ ... .......+|+|+ |+.|+..+ ++ .+.+||+.
T Consensus 322 dl~~g~-~-~~l-t~~--g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 322 AASGGS-A-ERL-TFQ--GNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred ECCCCC-e-EEe-ecC--CCCccCEEECCC--CCEEEEEECCCCceeEEEEECC
Confidence 665554 2 222 222 233457899999 77776554 22 68888863
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-05 Score=91.86 Aligned_cols=174 Identities=11% Similarity=0.044 Sum_probs=107.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCCCcceEEeeeeeccCCCCc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~ 1133 (1262)
..|.++|.. |.....+..+. ..+.+.+|+ +||+.|+..+.+ ..|.+||+.. ++...+ ......
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~---~~v~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP---EPIISPAWS--PDGTKLAYVSFESKKPVVYVHDLAT--GRRRVV------ANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCC---CCcccceEc--CCCCEEEEEEccCCCcEEEEEECCC--CCEEEe------ecCCCC
Confidence 467777875 44444455555 678899997 899888877643 4599999976 433222 212222
Q ss_pred ccccceeEEEcCCCCEEEE-EeCCCeEEEEe--CCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 000836 1134 VRCSNVVVDWQQQSGYLYA-SGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1209 (1262)
Q Consensus 1134 V~sv~l~v~wsp~~~~Lls-gg~Dg~IrIWD--lrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DGsVrIWDl 1209 (1262)
+.. ..|+|++..++. .+.++...+|. +..+. ...+..+... .+.. .|+++|+.++..+. +|...||.+
T Consensus 242 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~-~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSA----PAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSGI-DTEP-FFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccc----eEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCCC-CcCe-EEcCCCCEEEEEecCCCCcEEEEE
Confidence 334 899999998875 46677766665 44443 4555444432 4566 78999998776554 467777765
Q ss_pred CCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CC---ceEEEecc
Q 000836 1210 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KC---LPSFSDLI 1257 (1262)
Q Consensus 1210 rs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd---~I~~WDLr 1257 (1262)
.........+ ...+ .......|+|+ |+.|+..+ ++ .+.+||+.
T Consensus 314 ~~~~g~~~~l-t~~g--~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 314 PASGGAAQRV-TFTG--SYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred ECCCCceEEE-ecCC--CCcCceEECCC--CCEEEEEEccCCcEEEEEEECC
Confidence 4221112222 2222 23446789999 78877655 22 68888863
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=86.73 Aligned_cols=205 Identities=15% Similarity=0.187 Sum_probs=135.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~-~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+...|+....-|-++-+.+.++|.+++||-- +.++.-..+....+ .+++++.+. .+...|++|-..|++.-+.+.
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y~--~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEYV--SESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeeee--ccceEEEEEEecceEEEEEhh
Confidence 3345666667777778999999999999954 44565555544443 689999996 788899999999999988775
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCC------------------------------------
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------------------------------------ 1156 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~D------------------------------------ 1156 (1262)
..-.+ .+..+....|...+.. +-|+-....+++.|.|
T Consensus 99 edfnk---m~~~r~~~~h~~~v~~----~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvG 171 (404)
T KOG1409|consen 99 EDFNK---MTFLKDYLAHQARVSA----IVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVG 171 (404)
T ss_pred hhhhh---cchhhhhhhhhcceee----EEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEec
Confidence 41111 1111333333333332 2222222222222222
Q ss_pred ---CeEEEEeC--CCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEE
Q 000836 1157 ---SSIMLWDL--EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1157 ---g~IrIWDl--rs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~s 1231 (1262)
|.|.+-.+ ..-. .+.++.+|.+. ++++ +|.+...++.+|..|.+|.+||+-..+.... ...+|...|..
T Consensus 172 d~~gqvt~lr~~~~~~~-~i~~~~~h~~~-~~~l-~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~---el~gh~~kV~~ 245 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQ-LITTFNGHTGE-VTCL-KWDPGQRLLFSGASDHSVIMWDIGGRKGTAY---ELQGHNDKVQA 245 (404)
T ss_pred ccccceEEEEEeecCCc-eEEEEcCcccc-eEEE-EEcCCCcEEEeccccCceEEEeccCCcceee---eeccchhhhhh
Confidence 22222111 1122 67778888886 9999 8888889999999999999999976653332 34578888998
Q ss_pred EEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1232 ISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
+..-+. -+.|.++++| .|.+||+.
T Consensus 246 l~~~~~--t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 246 LSYAQH--TRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhh--heeeeeccCCCeEEEEecc
Confidence 888877 7788888855 99999974
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.3e-06 Score=92.14 Aligned_cols=139 Identities=16% Similarity=0.212 Sum_probs=97.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCc-EEEEEeCCCeEEEEEcCCCCCcc
Q 000836 1040 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYDQKDKQ 1118 (1262)
Q Consensus 1040 sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~-lLaTgS~DG~IrIWD~~~~~g~~ 1118 (1262)
-+.|+|+|+++|+.+ +-.+.|-|.++-+..+-|..- ..|.-+.|. .|.. .|.....|+.|.+|++.. +
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cl----dki~yieW~--ads~~ilC~~yk~~~vqvwsl~Q----p 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCL----DKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQ----P 81 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHH----HHhhheeee--ccceeeeeeeeccceEEEEEeec----c
Confidence 467999999999998 448889999887665554432 367778996 4544 556677899999999976 2
Q ss_pred eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEE
Q 000836 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1197 (1262)
Q Consensus 1119 ~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLat 1197 (1262)
+.- ..+.....++.. +.|+|+|.+|+.. ..+-.|.||.+.+.+ +. -++..... +..+ +++++|++.+.
T Consensus 82 ew~---ckIdeg~agls~----~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~-~~~~pK~~-~kg~-~f~~dg~f~ai 150 (447)
T KOG4497|consen 82 EWY---CKIDEGQAGLSS----ISWSPDGRHILLTSEFDLRITVWSLNTQK-GY-LLPHPKTN-VKGY-AFHPDGQFCAI 150 (447)
T ss_pred eeE---EEeccCCCccee----eeECCCcceEeeeecceeEEEEEEeccce-eE-EecccccC-ceeE-EECCCCceeee
Confidence 211 233444455555 8999999877766 458889999999887 33 33333332 6667 78888887776
Q ss_pred EEC
Q 000836 1198 GFV 1200 (1262)
Q Consensus 1198 Gs~ 1200 (1262)
.+.
T Consensus 151 ~sR 153 (447)
T KOG4497|consen 151 LSR 153 (447)
T ss_pred eec
Confidence 553
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00033 Score=85.71 Aligned_cols=182 Identities=13% Similarity=0.030 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCCe--EEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADE-N--ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGN--IRIW 1109 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~-d--g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG~--IrIW 1109 (1262)
..+....|+|+|+.|+..+. + ..|.+||..+++... +.... +......|+ +||+.|+ +.+.+|. |.+|
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~---g~~~~~~wS--PDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP---GINGAPRFS--PDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC---CCcCCeeEC--CCCCEEEEEEeCCCCeEEEEE
Confidence 35678899999998887643 2 358899998876432 22222 233467897 7888665 5667776 5555
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-D--g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
|... ++. +.+..+...... ..|+|++..++.+++ + ..|.++|+.+++ . ..+...... ....
T Consensus 292 dl~t--g~~------~~lt~~~~~~~~----p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~-~~Lt~~g~~-~~~~- 355 (448)
T PRK04792 292 DIAT--KAL------TRITRHRAIDTE----PSWHPDGKSLIFTSERGGKPQIYRVNLASGK-V-SRLTFEGEQ-NLGG- 355 (448)
T ss_pred ECCC--CCe------EECccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEEecCCCC-CcCe-
Confidence 6644 332 233334333444 889999998877654 3 346677887766 3 333222121 2334
Q ss_pred EEcCCCCEEEEEEC-CCc--EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1187 ASQVHGGQLAAGFV-DGS--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~-DGs--VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
.++++|+.++..+. ++. |.++|+.+++ . ..+... .......|+|+ |+.|+..+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~-~~lt~~----~~d~~ps~spd--G~~I~~~~ 411 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGA-M-QVLTST----RLDESPSVAPN--GTMVIYST 411 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCC-e-EEccCC----CCCCCceECCC--CCEEEEEE
Confidence 67899988776654 444 4456776665 2 222111 11224579999 66665544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-05 Score=89.78 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE---eCCCeEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA---SCNGNIRI 1108 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~----~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg---S~DG~IrI 1108 (1262)
..+..+..++.++++|++..+....++++.... .+..+.... .-+++.|. .+......+ ++...+.+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~--~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFI--REDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----Ccceeeee--eccceEEEEeecCCceeeee
Confidence 345566788999999999988888888876542 233332222 33445554 233333333 34455555
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTA 1187 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~ 1187 (1262)
|.... +.. +.+-||.+.+.. ++|+|++.+|+++..|..|||-.....- .+..+. +|... |..+ +
T Consensus 137 ~s~~~--~~~------~~~lGhvSml~d----VavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eF-VS~i-s 201 (390)
T KOG3914|consen 137 LSADS--GRC------EPILGHVSMLLD----VAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEF-VSTI-S 201 (390)
T ss_pred ecccc--cCc------chhhhhhhhhhe----eeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhh-eeee-e
Confidence 55543 333 345789998988 9999999999999999999997776666 666665 47776 9888 4
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCCc
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPDM 1214 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~~ 1214 (1262)
.. ++..|++|++|++|++||.++++.
T Consensus 202 l~-~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 202 LT-DNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ec-cCceeeecCCCCcEEEEecccCCc
Confidence 43 455699999999999999998874
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.001 Score=78.59 Aligned_cols=212 Identities=11% Similarity=0.148 Sum_probs=130.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CcEEEE---ee--CC-----CCCCCCeEEEEEeecCCCcEEEEEe
Q 000836 1034 FEKGTKTALLQPFSPIVVAADE-NERIKIWNYEE-DTLLNS---FD--NH-----DFPDKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~-dg~I~VWD~~t-g~~l~~---~~--~h-----~~~~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
.+..+..++++|++++|+++.. +|.|.++++.. |..... +. +. ...+....++.|+ ++++++++..
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~--pdg~~v~v~d 162 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS--PDGRFVYVPD 162 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC--CCCCEEEEEe
Confidence 3566788999999999999874 89999999987 432222 21 00 1123567889997 8888777654
Q ss_pred -CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCC--CCc-eeeEeecC
Q 000836 1102 -CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLE--KEQ-QMVNPIPS 1176 (1262)
Q Consensus 1102 -~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlr--s~~-~~v~ti~~ 1176 (1262)
....|.+|++....++....... .+ .....-+. +.|+|++.++++... ++.|.++++. .+. ..++.+..
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~-~~-~~G~GPRh----~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSI-KV-PPGSGPRH----LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEE-EC-STTSSEEE----EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred cCCCEEEEEEEeCCCceEEEeecc-cc-ccCCCCcE----EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 45689999997632222222111 11 22333455 899999999988865 7889999988 222 12333322
Q ss_pred C---C--CCCeeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--C
Q 000836 1177 S---S--DCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP--K 1248 (1262)
Q Consensus 1177 h---s--~~~VtsLa~~s~~g~lLatGs-~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS--d 1248 (1262)
. . ......| ..+++|+++.+.. .+++|.+|++......+...............++++|+ |++|+.+. +
T Consensus 237 ~~~~~~~~~~~~~i-~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~--g~~l~Va~~~s 313 (345)
T PF10282_consen 237 LPEGFTGENAPAEI-AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD--GRYLYVANQDS 313 (345)
T ss_dssp CETTSCSSSSEEEE-EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT--SSEEEEEETTT
T ss_pred ccccccccCCceeE-EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC--CCEEEEEecCC
Confidence 1 1 1126677 7889999776655 57889999994321111121111111345799999999 88888776 3
Q ss_pred CceEEEec
Q 000836 1249 CLPSFSDL 1256 (1262)
Q Consensus 1249 d~I~~WDL 1256 (1262)
+.|.++++
T Consensus 314 ~~v~vf~~ 321 (345)
T PF10282_consen 314 NTVSVFDI 321 (345)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEEE
Confidence 47777764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00028 Score=85.15 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=110.6
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCCCcceEEeeeeeccCCCC
Q 000836 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132 (1262)
Q Consensus 1056 dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~ 1132 (1262)
...|.++|...+ ....+..+. ..+.+..|+ +||+.|+.++.+ ..|++||+.. ++...+ ..+..
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~~S--pdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSR---EPILSPAWS--PDGQKLAYVSFESGKPEIYVQDLAT--GQREKV------ASFPG 234 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCC---CceecccCC--CCCCEEEEEEcCCCCcEEEEEECCC--CCEEEe------ecCCC
Confidence 446888887633 344455555 568888997 899988877644 4799999976 433222 22333
Q ss_pred cccccceeEEEcCCCCEEEEE-eCC--CeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--cEEE
Q 000836 1133 GVRCSNVVVDWQQQSGYLYAS-GEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRL 1206 (1262)
Q Consensus 1133 ~V~sv~l~v~wsp~~~~Llsg-g~D--g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DG--sVrI 1206 (1262)
.+.. +.|+|++..++.+ +.+ ..|.+||+.++. ...+..+... .... .++++|+.|+..+. +| .|.+
T Consensus 235 ~~~~----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGA----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccc----eEECCCCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 3444 7899999888755 333 458899998776 3444444332 4455 67889988776654 33 5777
Q ss_pred EECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC----ceEEEecc
Q 000836 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC----LPSFSDLI 1257 (1262)
Q Consensus 1207 WDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd----~I~~WDLr 1257 (1262)
+|+.+++ .. .+ . .+...+..+.|+|+ +..++.++.+ .+.+||+.
T Consensus 307 ~d~~~~~-~~-~l-~--~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 307 MDADGGE-VR-RL-T--FRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred EECCCCC-EE-Ee-e--cCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCC
Confidence 7877655 22 22 1 12355678899999 7777766532 67777764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=87.17 Aligned_cols=216 Identities=13% Similarity=0.198 Sum_probs=139.9
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c--EEEEeeCCCCC--CCCeEEEEEeecCCCcEEEEEeCC
Q 000836 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-T--LLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASCN 1103 (1262)
Q Consensus 1029 ~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-~--~l~~~~~h~~~--~~~ItsL~fsn~~dg~lLaTgS~D 1103 (1262)
.+.+.|...|.++.++.|...+++++ |=.|.+|+++-- + -+..++.++.. ..-||+..|+ +...+.++-.|+.
T Consensus 158 v~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFh-p~~cn~f~YSSSK 235 (433)
T KOG1354|consen 158 VYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFH-PHHCNVFVYSSSK 235 (433)
T ss_pred eccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccC-HhHccEEEEecCC
Confidence 35667888899999999999999987 888999998743 2 23334443311 1358889996 6777899999999
Q ss_pred CeEEEEEcCCCC---CcceEE------eeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee
Q 000836 1104 GNIRIWKDYDQK---DKQKLV------TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1174 (1262)
Q Consensus 1104 G~IrIWD~~~~~---g~~~lv------sa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti 1174 (1262)
|+||+-|++... ...++. ..-..+.+-...|.. +.|++.|.++++- +--+|++||+..+..++.++
T Consensus 236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISD----vKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISD----VKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETY 310 (433)
T ss_pred CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhc----eEEccCCcEEEEe-ccceeEEEeccccCCcceEE
Confidence 999999998410 000000 000111222234455 8999988888764 34679999997665488888
Q ss_pred cCCCCC-----------Ce---eEEEEEcCCCCEEEEEECCCcEEEEECCCCCce-e-----------eeec-----CCC
Q 000836 1175 PSSSDC-----------SI---SALTASQVHGGQLAAGFVDGSVRLYDVRTPDML-V-----------CSTR-----PHT 1223 (1262)
Q Consensus 1175 ~~hs~~-----------~V---tsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~-v-----------~~~~-----~~~ 1223 (1262)
+.|..- +| ..+ +|+.++.+++||+....+++|+...+... . +... ...
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec-~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFEC-SWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEE-EEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 776421 12 223 67778889999999999999995332100 0 0000 000
Q ss_pred C-------------CCCCeEEEEEecCCCCCEEEEecCCceEEE
Q 000836 1224 Q-------------QVERVVGISFQPGLDPAKVNGTPKCLPSFS 1254 (1262)
Q Consensus 1224 g-------------H~~~V~slafsp~~~g~~LaSgSdd~I~~W 1254 (1262)
| ....|...+|||. ...++.+..+++.++
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~--en~ia~aatnnlyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPK--ENSIAVAATNNLYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCc--cceeeeeecCceEEe
Confidence 0 0123556789999 788888887755543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-06 Score=96.11 Aligned_cols=171 Identities=19% Similarity=0.373 Sum_probs=117.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~t-------g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
..|..+|..++--.+++-+++++.|.+|++|.++. ..+..+++.|. ..|.++.|. .+-..++ |.||
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---k~i~~igfL--~~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---KPIHDIGFL--ADLRSIA--SCDG 804 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---Ccccceeee--eccceee--eccC
Confidence 35666787777777788899999999999999864 24777889999 899999997 5555555 4599
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEE-eCCCeEEEEeCCCCceeeEeec-----CC
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP-----SS 1177 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsg-g~Dg~IrIWDlrs~~~~v~ti~-----~h 1177 (1262)
.|.+||... +..-....+..-.+..+.|.+ ... +...+++| +...+|+++|.|... .+..+. +.
T Consensus 805 giHlWDPFi--gr~Laq~~dapk~~a~~~ikc------l~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 805 GIHLWDPFI--GRLLAQMEDAPKEGAGGNIKC------LENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGP 875 (1034)
T ss_pred cceeecccc--cchhHhhhcCcccCCCceeEe------cccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCC
Confidence 999999875 322100001111111222222 111 23344444 568899999999987 444432 33
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecC
Q 000836 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1262)
Q Consensus 1178 s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~ 1221 (1262)
.. .+.++ ...+.|+.+++|-.+|.|.+.|.|++. .+..|+.
T Consensus 876 na-~~R~i-aVa~~GN~lAa~LSnGci~~LDaR~G~-vINswrp 916 (1034)
T KOG4190|consen 876 NA-LTRAI-AVADKGNKLAAALSNGCIAILDARNGK-VINSWRP 916 (1034)
T ss_pred ch-heeEE-EeccCcchhhHHhcCCcEEEEecCCCc-eeccCCc
Confidence 33 37788 778899999999999999999999987 4544543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=93.57 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=116.9
Q ss_pred EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC
Q 000836 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1262)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~ 1148 (1262)
.++.|.+|. ..|..+.-. .+.+-++++|.|.+|++|.++....+.......-+++.|...|.+++ |-.+-.
T Consensus 727 rL~nf~GH~---~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig----fL~~lr 797 (1034)
T KOG4190|consen 727 RLCNFTGHQ---EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG----FLADLR 797 (1034)
T ss_pred eeecccCcH---HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccccee----eeeccc
Confidence 456677888 777777765 56678999999999999999863222211112346788999999944 444444
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEEEc-CCCCEEEEE-ECCCcEEEEECCCCCceeeeecCC--C
Q 000836 1149 YLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQ-VHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--T 1223 (1262)
Q Consensus 1149 ~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~~s-~~g~lLatG-s~DGsVrIWDlrs~~~~v~~~~~~--~ 1223 (1262)
++ .+.||.|.+||.-.++ .+..+. ....+.++.+.+.. .+.+++.+| +...+|+++|.|..+ ..+.++.. .
T Consensus 798 ~i--~ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~ 873 (1034)
T KOG4190|consen 798 SI--ASCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAP 873 (1034)
T ss_pred ee--eeccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCC
Confidence 44 4568889999988777 655432 21111133332223 256666666 778999999999887 34444433 3
Q ss_pred CCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1224 QQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1224 gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
+.++-+.+++..+. |+.++.|= .+.+.+-|-|.
T Consensus 874 ~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 874 GPNALTRAIAVADK--GNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CCchheeEEEeccC--cchhhHHhcCCcEEEEecCC
Confidence 45577899999998 77887764 55777777664
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00084 Score=89.92 Aligned_cols=209 Identities=12% Similarity=0.137 Sum_probs=130.9
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeeCCCC-----C---------CCCeEEEEEeecCCCcEEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDF-----P---------DKGISKLCLVNELDVSLLLVA 1100 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs-~dg~I~VWD~~tg~~l~~~~~h~~-----~---------~~~ItsL~fsn~~dg~lLaTg 1100 (1262)
..+..++++++++.|++++ .++.|+++|..++. +.++.+... . -..-++++++ +.++.++++.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad 701 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAM 701 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEE
Confidence 4578899999888777665 45789999998764 444422100 0 0123578886 3367788888
Q ss_pred eCCCeEEEEEcCCCCCcceEEee---eeeccCCC------CcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q 000836 1101 SCNGNIRIWKDYDQKDKQKLVTA---FSSIQGHK------PGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1101 S~DG~IrIWD~~~~~g~~~lvsa---~~~l~~h~------~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~ 1170 (1262)
+.++.|++||... +....... .....++. ....+ ++++++++.|+++ +.++.|++||+.++. .
T Consensus 702 ~~~~~I~v~d~~~--g~v~~~~G~G~~~~~~g~~~~~~~~~~P~G----IavspdG~~LYVADs~n~~Irv~D~~tg~-~ 774 (1057)
T PLN02919 702 AGQHQIWEYNISD--GVTRVFSGDGYERNLNGSSGTSTSFAQPSG----ISLSPDLKELYIADSESSSIRALDLKTGG-S 774 (1057)
T ss_pred CCCCeEEEEECCC--CeEEEEecCCccccCCCCccccccccCccE----EEEeCCCCEEEEEECCCCeEEEEECCCCc-E
Confidence 8899999999865 32211100 00001110 11223 7889999877777 667999999998765 2
Q ss_pred eEeecC-------------CCC-------CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecC---------
Q 000836 1171 VNPIPS-------------SSD-------CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP--------- 1221 (1262)
Q Consensus 1171 v~ti~~-------------hs~-------~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~--------- 1221 (1262)
....-+ ..+ ....++ ++.++|+++++-+.++.|++||..++. .......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv-avd~dG~LYVADs~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV-LCAKDGQIYVADSYNHKIKKLDPATKR-VTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCcee-eEeCCCcEEEEECCCCEEEEEECCCCe-EEEEeccCCcCCCCCc
Confidence 111100 000 013466 667889999999999999999998665 2211100
Q ss_pred -CCCCCCCeEEEEEecCCCCCEEEEecCC-ceEEEecc
Q 000836 1222 -HTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1222 -~~gH~~~V~slafsp~~~g~~LaSgSdd-~I~~WDLr 1257 (1262)
..++-....+|+++++ |+.+++-+.+ .|++||+.
T Consensus 853 ~~~a~l~~P~GIavd~d--G~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 853 ALKAQLSEPAGLALGEN--GRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccccccCCceEEEEeCC--CCEEEEECCCCEEEEEECC
Confidence 0112235789999999 7777776654 99999985
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.8e-05 Score=87.01 Aligned_cols=243 Identities=19% Similarity=0.288 Sum_probs=168.5
Q ss_pred ccchhHHHhccchh--HHHHHHHHHHHhcCCH-HHHHHHHhcCChhhhhhhcCCCchhHHH-HHHHHHHHHhccChhhhh
Q 000836 462 QLPIVLQVLLSQCH--RFRALVLLGRFLDMGP-WAVDLALSVGIFPYVLKLLQTTTPELRQ-ILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 462 ~lPiVLqvLlS~~~--rlral~lL~~fld~gp-wAv~lals~gifpyvlkLLqs~~~elr~-~lvFIwa~il~~d~~~Q~ 537 (1262)
+||-++|-|.|..- .+.|+.=.-++|..-- --..-.+..|..|-|+.+|.+...++-. =++|.++.|.+.- +-|.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QT 150 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQT 150 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccce
Confidence 68889999988653 4455554334443211 1112234569999999999644444333 3788999988763 4454
Q ss_pred hhh-ccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCC---------------
Q 000836 538 DLV-KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMP--------------- 601 (1262)
Q Consensus 538 dl~-k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~--------------- 601 (1262)
..| -.+..+.|++.|.+.+. +.|--+.|.|+-+--+-+.-+-..++.|+++-++.+|.....
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~--~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTED--DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred EEEEeCCchHHHHHHHcCchH--HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 444 44567999999987664 667777777777665555556666777777766666653322
Q ss_pred ------CCC----------------CCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHH
Q 000836 602 ------NDA----------------QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1262)
Q Consensus 602 ------~~~----------------~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~a 659 (1262)
+.+ ..+|++.-=+|-+++.|-++..+.-+..++.+++.+|..+|.+++..|..-++-+
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 000 3457777778888888888888888889999999999999999999999999999
Q ss_pred HhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Q 000836 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 660 ls~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~ 721 (1262)
+|++|... +.+.++.+.-....++..+++.+.-.+|||+.|-+|.+-.
T Consensus 309 vGNIVTG~--------------D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 309 VGNIVTGS--------------DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred hcCeeecC--------------ccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 99999322 1112334455566777777888888999999999987653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.3e-05 Score=83.97 Aligned_cols=146 Identities=15% Similarity=0.204 Sum_probs=90.5
Q ss_pred CcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeecc-CCCCcccccceeEEEcCCCCEEEEEeCCC------eEEEEeCCC
Q 000836 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVS------SIMLWDLEK 1166 (1262)
Q Consensus 1094 g~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~-~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg------~IrIWDlrs 1166 (1262)
++-+++|..||.+.+++.+. . ..+. +... .|.. ..+ .+.-..+..+.++ .-| ..+.|+++.
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~-~--~~~~---~~i~~~~~~-~as----~~~~~~~~~i~s~-~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDK-D--LALM---SRIPSIHSG-SAS----RKICRHGNSILSG-GCGNWNAQDNFYANTLDP 168 (319)
T ss_pred CCceEecCCCceEEEEechH-H--Hhhh---hhccccccc-ccc----cceeecccEEecC-CcceEeeccceeeecccc
Confidence 56799999999999999854 1 1000 1111 1111 001 2222233444433 333 345666665
Q ss_pred CceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEe
Q 000836 1167 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGT 1246 (1262)
Q Consensus 1167 ~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSg 1246 (1262)
.+..+..... -+ .|++++..+...+++++|+.||.+-+||.|....++..+ ..|+.+|+.+.|||. ++..|.++
T Consensus 169 ~~t~~~~~~~-~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l---~ahk~~i~eV~FHpk-~p~~Lft~ 242 (319)
T KOG4714|consen 169 IKTLIPSKKA-LD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL---KAHKAEIWEVHFHPK-NPEHLFTC 242 (319)
T ss_pred cccccccccc-cc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH---HHhhhhhhheeccCC-CchheeEe
Confidence 4411111111 12 288885544556788999999999999999887555444 456799999999999 78889898
Q ss_pred cCC-ceEEEecc
Q 000836 1247 PKC-LPSFSDLI 1257 (1262)
Q Consensus 1247 Sdd-~I~~WDLr 1257 (1262)
++| .+--||-.
T Consensus 243 sedGslw~wdas 254 (319)
T KOG4714|consen 243 SEDGSLWHWDAS 254 (319)
T ss_pred cCCCcEEEEcCC
Confidence 866 88789865
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.9e-05 Score=97.61 Aligned_cols=205 Identities=20% Similarity=0.147 Sum_probs=105.4
Q ss_pred CCcccchhHHHhccch--hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhh
Q 000836 459 PPEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1262)
Q Consensus 459 pp~~lPiVLqvLlS~~--~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q 536 (1262)
+++.+|.+.++|-.+. -|..|+..|.++.+.-+ .-+.++.+|+++.+++|..++-.+..+-..
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~----- 714 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG----- 714 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----
Confidence 5677788787775544 37777777777643211 124555666666677777766666543211
Q ss_pred hhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHH
Q 000836 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1262)
Q Consensus 537 ~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l 616 (1262)
....|+..|.+++. +.|..++..|+.+- . ...++..|. |++|+||..++-
T Consensus 715 -------~~~~l~~~L~D~d~--~VR~~Av~aL~~~~-~-------------~~~l~~~l~-------D~~~~VR~~aa~ 764 (897)
T PRK13800 715 -------DAALFAAALGDPDH--RVRIEAVRALVSVD-D-------------VESVAGAAT-------DENREVRIAVAK 764 (897)
T ss_pred -------CHHHHHHHhcCCCH--HHHHHHHHHHhccc-C-------------cHHHHHHhc-------CCCHHHHHHHHH
Confidence 11234555655553 66666666666531 0 112334455 556666666666
Q ss_pred HHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcc-cCCCCCCCCCCCChHH---HHHH---
Q 000836 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD-SCRDGVEGDEECDDDE---KIRA--- 689 (1262)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~-~~~~~~~~~~~~~~~~---~~~~--- 689 (1262)
.|+.+......+ ...|..+++|+.|+||++++-+|+.+-..... .... ....+..... .+..
T Consensus 765 aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~--~aL~d~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 765 GLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAAT--AALRASAWQVRQGAARALAG 833 (897)
T ss_pred HHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHH--HHhcCCChHHHHHHHHHHHh
Confidence 666665432111 22455556666666666666666555311000 0000 0000000000 0000
Q ss_pred --HHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000836 690 --EISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1262)
Q Consensus 690 --e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~ 719 (1262)
.......|+.++.|.++.||++++.+|..+
T Consensus 834 l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 834 AAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 011235567777888888888888888774
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0009 Score=79.78 Aligned_cols=175 Identities=9% Similarity=0.080 Sum_probs=109.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCCCc
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDK 1117 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS-~DG~IrIWD~~~~~g~ 1117 (1262)
..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+++++ +||++++++. .++.+.|+|..+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s--~DG~~~~v~n~~~~~v~v~D~~t---- 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVS--PDGKYVYVANYEPGTVSVIDAET---- 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE----TTTEEEEEEEETTEEEEEETTT----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEc--CCCCEEEEEecCCCceeEecccc----
Confidence 457899999999999999999999999999999998765 45779997 8999888776 689999999876
Q ss_pred ceEEeeeeec--c--CCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCceee--EeecCCCCCCeeEEEEEcC
Q 000836 1118 QKLVTAFSSI--Q--GHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1118 ~~lvsa~~~l--~--~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~~v--~ti~~hs~~~VtsLa~~s~ 1190 (1262)
.+.+...... . ...+.+.. +.-++.+..+++. -+.+.|.+-|....+ .+ ..+..... .... .+.+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~a----Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~~g~~--~~D~-~~dp 181 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAA----IVASPGRPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIKVGRF--PHDG-GFDP 181 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEE----EEE-SSSSEEEEEETTTTEEEEEETTTSS-CEEEEEEE--TT--EEEE-EE-T
T ss_pred ccceeecccccccccccCCCcee----EEecCCCCEEEEEEccCCeEEEEEecccc-ccceeeeccccc--cccc-ccCc
Confidence 2233221111 1 11223333 4445666755555 445888888877655 33 33433322 6777 7889
Q ss_pred CCCEEEEE-ECCCcEEEEECCCCCceeeeec-CCCCCCCCeEEE
Q 000836 1191 HGGQLAAG-FVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGI 1232 (1262)
Q Consensus 1191 ~g~lLatG-s~DGsVrIWDlrs~~~~v~~~~-~~~gH~~~V~sl 1232 (1262)
++++++++ ..+..|-++|..+++. +..+. ....|..++..+
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~-v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKL-VALIDTGKKPHPGPGANF 224 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-SSSBEETTEEEE
T ss_pred ccceeeecccccceeEEEeeccceE-EEEeeccccccccccccc
Confidence 99987665 5678999999988763 32221 223344555543
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00029 Score=78.75 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCC-cEEEEEeCCCeEEEEEcCCCC
Q 000836 1038 TKTALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fspdg~~Las-gs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg-~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
|.-+.|..+.-+++. ...++.|.+|++...+--.++..+. .++.+++|+ +|| .+|.+..-|-.|.||.+.+..
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISWS--PDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC---CcceeeeEC--CCcceEeeeecceeEEEEEEeccce
Confidence 444566666665554 5667899999999887777888777 789999998 888 566677789999999997622
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe------------------------------------CCCeE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG------------------------------------EVSSI 1159 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg------------------------------------~Dg~I 1159 (1262)
+. .+ +.....+.. ++|+|+|.+.+..+ ++..+
T Consensus 126 ~~--~~------~~pK~~~kg----~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 126 GY--LL------PHPKTNVKG----YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred eE--Ee------cccccCcee----EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 11 11 111111122 33333333322221 11234
Q ss_pred EEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1160 rIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
-|||---+- .+......-+ +..+ .++|.+++++.|+.|+.+||-+
T Consensus 194 aVwd~~Ley-kv~aYe~~lG--~k~v-~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 194 AVWDNVLEY-KVYAYERGLG--LKFV-EWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred EEecchhhh-eeeeeeeccc--eeEE-EeccccceEEeeccchhhhhhc
Confidence 456644333 3333322222 7788 8899999999999999998743
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=80.81 Aligned_cols=194 Identities=11% Similarity=-0.026 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCEE---EEEeCC--CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-CC----eEE
Q 000836 1038 TKTALLQPFSPIV---VAADEN--ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG----NIR 1107 (1262)
Q Consensus 1038 V~sl~fspdg~~L---asgs~d--g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-DG----~Ir 1107 (1262)
...-.|+|||+.+ ++...+ ..|.+.++.+++... +.... +......|+ +||+.|+..+. +| .+.
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~---g~~~~p~wS--PDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQ---GNQLMPTFS--PRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCC---CCccceEEC--CCCCEEEEEECCCCCcceeEE
Confidence 4456899999742 244433 358888988775332 22222 334457897 89987776543 33 344
Q ss_pred EEEcCCCC-CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEE--eCCC-CceeeEeecCCCCCCe
Q 000836 1108 IWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLW--DLEK-EQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1108 IWD~~~~~-g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIW--Dlrs-~~~~v~ti~~hs~~~V 1182 (1262)
+|+..... +... +...+....... ..|+|+|..|+..+ .+|...+| ++.. +. ....+..+... +
T Consensus 261 ~~~~~~g~~g~~~-----~lt~~~~~~~~~----p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~-~ 329 (428)
T PRK01029 261 SFSLETGAIGKPR-----RLLNEAFGTQGN----PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRN-S 329 (428)
T ss_pred EeecccCCCCcce-----EeecCCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCC-c
Confidence 46654311 1221 111222222334 78999999887765 35655555 4432 22 34444443333 5
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEE-ecC-C--ceEEEe
Q 000836 1183 SALTASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNG-TPK-C--LPSFSD 1255 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs~D---GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaS-gSd-d--~I~~WD 1255 (1262)
... .|+++|+.|+..+.+ ..|.+||+.+++. . .+ .. ....+.+..|+|+ |+.|+. +.. + .+..||
T Consensus 330 ~~p-~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~-~L-t~--~~~~~~~p~wSpD--G~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 330 SCP-AWSPDGKKIAFCSVIKGVRQICVYDLATGRD-Y-QL-TT--SPENKESPSWAID--SLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred cce-eECCCCCEEEEEEcCCCCcEEEEEECCCCCe-E-Ec-cC--CCCCccceEECCC--CCEEEEEECCCCCceEEEEE
Confidence 666 789999988766543 4689999987762 2 22 11 1234677899999 766654 332 2 666777
Q ss_pred c
Q 000836 1256 L 1256 (1262)
Q Consensus 1256 L 1256 (1262)
+
T Consensus 402 l 402 (428)
T PRK01029 402 L 402 (428)
T ss_pred C
Confidence 5
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=77.59 Aligned_cols=170 Identities=17% Similarity=0.293 Sum_probs=111.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--EE--EEeeCCCCCCCCeEEEEEeecCCCcEE-EEEeCCCeEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDT--LL--NSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIR 1107 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs-~dg~I~VWD~~tg~--~l--~~~~~h~~~~~~ItsL~fsn~~dg~lL-aTgS~DG~Ir 1107 (1262)
....+.++.|+|+++++++.+ ..+.|.+|++.... .. ..+.. +.+..-..+.|+ ++++++ ++.-.++.|.
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~--pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFS--PDGKYAYVVNELSNTVS 217 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE---TTSSEEEEEETTTTEEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEc--CCcCEEEEecCCCCcEE
Confidence 345688999999999888876 35689999997654 32 23322 335678899997 787766 4555689999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe-CCCeEEEEeCCCC--c-eeeEeecCCCCCCee
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKE--Q-QMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg-~Dg~IrIWDlrs~--~-~~v~ti~~hs~~~Vt 1183 (1262)
+|+.....+..+.+.....+........ ...-+..+|++.+|+++. ....|.++++... + ..+..+...... .+
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-Pr 295 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGEN-APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-PR 295 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSS-SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-EE
T ss_pred EEeecccCCceeEEEEeeeccccccccC-CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-cc
Confidence 9999843465555544444432111110 111278899999999984 4778999999432 2 144555554343 68
Q ss_pred EEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 000836 1184 ALTASQVHGGQLAAGF-VDGSVRLYDVR 1210 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs-~DGsVrIWDlr 1210 (1262)
.+ .++++|++++++. .++.|.+|++.
T Consensus 296 ~~-~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HF-AFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EE-EE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EE-EEeCCCCEEEEEecCCCeEEEEEEe
Confidence 88 7789999888776 56799999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=87.01 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=116.7
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC-CCcceEEeeeeeccC
Q 000836 1051 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQG 1129 (1262)
Q Consensus 1051 asgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~-~g~~~lvsa~~~l~~ 1129 (1262)
++.+.+-.|-+-|+++|.. +.|. .. +.|.++.|. ..++++..|+.+|.|.++|++.. +|+...+ .---
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sk---sDVfAlQf~--~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a----~rly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SK---SDVFALQFA--GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA----QRLY 296 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cc---hhHHHHHhc--ccCCeeEecccCCcEEEEEeeecccCCCcce----EEEE
Confidence 3344477788889987743 3454 23 578889995 66899999999999999999862 1221111 1123
Q ss_pred CCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCcee---eEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEE
Q 000836 1130 HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1262)
Q Consensus 1130 h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~---v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrI 1206 (1262)
|.+.|+++.. +.| ++..|++++-+|+|++||.|.-+ + +.+..+|....-.-....++....+++++.|...||
T Consensus 297 h~Ssvtslq~-Lq~--s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 297 HDSSVTSLQI-LQF--SQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred cCcchhhhhh-hcc--ccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 7788888443 333 56789999999999999999988 7 899999876511111123455667888999999999
Q ss_pred EECCCCCceeeeec-CCCCCCCCeEEEEEecC
Q 000836 1207 YDVRTPDMLVCSTR-PHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1207 WDlrs~~~~v~~~~-~~~gH~~~V~slafsp~ 1237 (1262)
|.++.+. +.+++. ........+.+++|...
T Consensus 373 Wsl~~gh-Ll~tipf~~s~~e~d~~sv~~~sr 403 (425)
T KOG2695|consen 373 WSLDSGH-LLCTIPFPYSASEVDIPSVAFDSR 403 (425)
T ss_pred EecccCc-eeeccCCCCccccccccceehhcc
Confidence 9999887 444442 12222335677777543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=95.63 Aligned_cols=202 Identities=17% Similarity=0.066 Sum_probs=133.0
Q ss_pred ccchhHHHhccchh--HHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhh
Q 000836 462 QLPIVLQVLLSQCH--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1262)
Q Consensus 462 ~lPiVLqvLlS~~~--rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl 539 (1262)
-++.+++.|-.+.. |..|+..|+++-+ -+.+|-+.++|.++..++|..++--+.+|....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----
Confidence 45567787776554 8888999888752 34678888999999999999988888887432222
Q ss_pred hccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Q 000836 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1262)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1262)
.......|++++ ++.|..++-.|+.+-.+ -...++..|. |++|.||..++.+|+
T Consensus 686 -----~~~L~~~L~~~d--~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-------D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 686 -----APALRDHLGSPD--PVVRAAALDVLRALRAG------------DAALFAAALG-------DPDHRVRIEAVRALV 739 (897)
T ss_pred -----hHHHHHHhcCCC--HHHHHHHHHHHHhhccC------------CHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 134556676654 58899999888876421 1235667888 899999999999999
Q ss_pred hhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHH--H-------H
Q 000836 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIR--A-------E 690 (1262)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~--~-------e 690 (1262)
.+ +. .+.|+.++.|++|+||.+++-+|+.+-............-..+.+...+.. . +
T Consensus 740 ~~-~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 740 SV-DD-------------VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP 805 (897)
T ss_pred cc-cC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc
Confidence 86 11 134788999999999999999999885322100000000000011111110 0 1
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000836 691 ISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1262)
Q Consensus 691 ~~~~~~ll~~~~D~sp~VR~E~~~~ls~~ 719 (1262)
..+...++..+.|.++.||.+++.+|..+
T Consensus 806 ~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 806 PDDVAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred chhHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 11223456677888888888888888754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00088 Score=79.81 Aligned_cols=195 Identities=15% Similarity=0.224 Sum_probs=122.1
Q ss_pred CCCCeEEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEeecCCCcEEEEEeCC--
Q 000836 1034 FEKGTKTALLQPFSP--IVVA-----ADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASCN-- 1103 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~--~Las-----gs~dg~I~VWD~~tg~~l~~~~~h~~~-~~~ItsL~fsn~~dg~lLaTgS~D-- 1103 (1262)
+..+++.+.++|.+. ++|+ +|.-+.|+||....+..-.......-. .+.| .+.|. .....+|+.++.|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN-~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWN-KLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEec-cCCceEEEEEEEeec
Confidence 356789999998733 5555 345678999998733211111111100 1233 47884 4444555544432
Q ss_pred C---------eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eC-CCeEEEEeCCCCceeeE
Q 000836 1104 G---------NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GE-VSSIMLWDLEKEQQMVN 1172 (1262)
Q Consensus 1104 G---------~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~-Dg~IrIWDlrs~~~~v~ 1172 (1262)
. ++++.++. +....| --...++|.+ +.|++++..++++ |. -..+.|+|++.. ++.
T Consensus 242 ktn~SYYGEq~Lyll~t~---g~s~~V-----~L~k~GPVhd----v~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~ 307 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ---GESVSV-----PLLKEGPVHD----VTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVF 307 (566)
T ss_pred CCCccccccceEEEEEec---CceEEE-----ecCCCCCceE----EEECCCCCEEEEEEecccceEEEEcCCCC--EeE
Confidence 2 45555554 222111 1123578888 9999999887776 44 467999998754 577
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEE-EEC--CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--
Q 000836 1173 PIPSSSDCSISALTASQVHGGQLAA-GFV--DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-- 1247 (1262)
Q Consensus 1173 ti~~hs~~~VtsLa~~s~~g~lLat-Gs~--DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-- 1247 (1262)
.+.... -+++ .|+++|++++. |++ -|.|-|||+.+.+. +..+. -..-+-..|+|+ |.+++|+.
T Consensus 308 df~egp---RN~~-~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~-----a~~tt~~eW~Pd--Ge~flTATTa 375 (566)
T KOG2315|consen 308 DFPEGP---RNTA-FFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-IAKFK-----AANTTVFEWSPD--GEYFLTATTA 375 (566)
T ss_pred eCCCCC---ccce-EECCCCCEEEEeecCCCCCceEEEeccchhh-ccccc-----cCCceEEEEcCC--CcEEEEEecc
Confidence 776532 4566 89999997655 554 39999999998663 33331 134577899999 89998876
Q ss_pred -----CCceEEEec
Q 000836 1248 -----KCLPSFSDL 1256 (1262)
Q Consensus 1248 -----dd~I~~WDL 1256 (1262)
|+.++||+.
T Consensus 376 PRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHY 389 (566)
T ss_pred ccEEecCCeEEEEe
Confidence 458899985
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0044 Score=70.98 Aligned_cols=203 Identities=11% Similarity=0.154 Sum_probs=129.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-CCeEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADE---NERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIW 1109 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~---dg~I~VWD~~t--g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-DG~IrIW 1109 (1262)
..++=|+|+|++++|.++.. +|.|..|.+.. |+.. -+......+..-+.++.+ +++++++++.. .|.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~yvsvd--~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPCYVSVD--EDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCCCCCeEEEEC--CCCCEEEEEEccCceEEEE
Confidence 55788999999999988754 57788888774 4322 111111222444778886 88989888875 5999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCc----------ccccceeEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeeEe--ec
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPG----------VRCSNVVVDWQQQSGYLYAS--GEVSSIMLWDLEKEQQMVNP--IP 1175 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~----------V~sv~l~v~wsp~~~~Llsg--g~Dg~IrIWDlrs~~~~v~t--i~ 1175 (1262)
.+.. +|....+. ... .|... +.. ..+.|++.++++. |.|+ |.+|++..++ .... ..
T Consensus 117 p~~~-dG~l~~~v--~~~-~h~g~~p~~rQ~~~h~H~----a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~-L~~~~~~~ 186 (346)
T COG2706 117 PLQA-DGSLQPVV--QVV-KHTGSGPHERQESPHVHS----ANFTPDGRYLVVPDLGTDR-IFLYDLDDGK-LTPADPAE 186 (346)
T ss_pred Eccc-CCccccce--eee-ecCCCCCCccccCCccce----eeeCCCCCEEEEeecCCce-EEEEEcccCc-cccccccc
Confidence 9976 34332221 111 12211 444 7788999999988 5565 8899998665 2111 11
Q ss_pred CCCCCCeeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCceeeeecCC---C---CCCCCeEEEEEecCCCCCEEEEecC
Q 000836 1176 SSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPH---T---QQVERVVGISFQPGLDPAKVNGTPK 1248 (1262)
Q Consensus 1176 ~hs~~~VtsLa~~s~~g~lLatGs~-DGsVrIWDlrs~~~~v~~~~~~---~---gH~~~V~slafsp~~~g~~LaSgSd 1248 (1262)
...+..-+.| .|++++++...-+. +++|-+|...........++.+ . .-..+...|+.+++ |++|..+..
T Consensus 187 v~~G~GPRHi-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d--GrFLYasNR 263 (346)
T COG2706 187 VKPGAGPRHI-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD--GRFLYASNR 263 (346)
T ss_pred cCCCCCcceE-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC--CCEEEEecC
Confidence 1222236888 89999998776654 8999999987642112222111 1 12457889999999 999988774
Q ss_pred C--ceEEE
Q 000836 1249 C--LPSFS 1254 (1262)
Q Consensus 1249 d--~I~~W 1254 (1262)
+ .|.++
T Consensus 264 g~dsI~~f 271 (346)
T COG2706 264 GHDSIAVF 271 (346)
T ss_pred CCCeEEEE
Confidence 4 44443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.7e-05 Score=87.34 Aligned_cols=133 Identities=14% Similarity=0.258 Sum_probs=101.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-----~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.+.|.++.|+..++++..|..+|.|.++|++.+ .+...+ -|. +.||++... +.++.+|++.+.+|+|++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~---Ssvtslq~L-q~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD---SSVTSLQIL-QFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC---cchhhhhhh-ccccceEeeccCcCceeEe
Confidence 356889999999999999999999999999864 333333 244 789999876 4478899999999999999
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCC
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~ 1179 (1262)
|.+..+.+. ..+...+|...-.-+. +..++..+.++++|+|...|||.++.+. .+.+++-...
T Consensus 327 D~R~~K~~~----~V~qYeGHvN~~a~l~--~~v~~eeg~I~s~GdDcytRiWsl~~gh-Ll~tipf~~s 389 (425)
T KOG2695|consen 327 DLRATKCKK----SVMQYEGHVNLSAYLP--AHVKEEEGSIFSVGDDCYTRIWSLDSGH-LLCTIPFPYS 389 (425)
T ss_pred eehhhhccc----ceeeeecccccccccc--cccccccceEEEccCeeEEEEEecccCc-eeeccCCCCc
Confidence 998632221 2366778854332211 3445778899999999999999999999 8888876544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-05 Score=97.66 Aligned_cols=189 Identities=16% Similarity=0.199 Sum_probs=132.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC--eEEEEEcC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDY 1112 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG--~IrIWD~~ 1112 (1262)
...-+|++|+-+.++|++|+..|.|+++++.+|........|. +.||-+.=+ .||..+++.+.-. -..+|+..
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---ccccccccc--CCcceeeeeccccCchHHHhccc
Confidence 4668999999999999999999999999999999999999998 899988876 7888777665433 46789986
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCC--CeeEEEEEcC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC--SISALTASQV 1190 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~--~VtsLa~~s~ 1190 (1262)
. .+.. + +.+. .-.+ +.|+.....-+.|.......+||+.+.. ++.++-..... .-..++.|+|
T Consensus 1176 s-~~~~--~---Hsf~----ed~~----vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1176 S-TGGP--R---HSFD----EDKA----VKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred c-ccCc--c---cccc----ccce----eehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence 5 2221 1 2222 1223 6676655555566555678999999998 77774322111 1233448888
Q ss_pred CCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecccc
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIYF 1259 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLryf 1259 (1262)
+..+++ .||. +||+|..+ .++.+..+. --..-.|||+ |..++..++ +||+|.|
T Consensus 1241 ~D~LIl---ndGv--LWDvR~~~-aIh~FD~ft----~~~~G~FHP~--g~eVIINSE----IwD~RTF 1293 (1516)
T KOG1832|consen 1241 CDTLIL---NDGV--LWDVRIPE-AIHRFDQFT----DYGGGGFHPS--GNEVIINSE----IWDMRTF 1293 (1516)
T ss_pred CcceEe---eCce--eeeeccHH-HHhhhhhhe----ecccccccCC--CceEEeech----hhhhHHH
Confidence 888775 4664 89999875 444443332 1123468999 888887774 7999876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=80.68 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-CCCeEEE
Q 000836 1038 TKTALLQPFSPIVVAADE-NE----RIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRI 1108 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~-dg----~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS-~DG~IrI 1108 (1262)
.....|+|||+.|+..+. +| .+.+|+..++ +......... +..+..+|+ +||+.|+..+ .+|...|
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---~~~~~p~wS--PDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---GTQGNPSFS--PDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---CCcCCeEEC--CCCCEEEEEECCCCCceE
Confidence 345789999998886542 22 2444676643 3222222222 334668997 8998777655 5777777
Q ss_pred EEcCCC--CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1109 WKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1109 WD~~~~--~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~D---g~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
|..... .+.. +.+..+...+.. ..|+|+|..|+..+.+ ..|.+||+.+++ . ..+...... +.
T Consensus 308 y~~~~~~~g~~~------~~lt~~~~~~~~----p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~~-~~ 374 (428)
T PRK01029 308 YIMQIDPEGQSP------RLLTKKYRNSSC----PAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPEN-KE 374 (428)
T ss_pred EEEECcccccce------EEeccCCCCccc----eeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCCC-cc
Confidence 765321 1212 223333334445 8899999988876542 469999998887 4 344333222 56
Q ss_pred EEEEEcCCCCEEEEEEC---CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1184 ALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.. .|+++|+.|+.... ++.|.++|+..++ ..... .. .+.+...+|+|.
T Consensus 375 ~p-~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-~~~Lt-~~---~g~~~~p~Ws~~ 425 (428)
T PRK01029 375 SP-SWAIDSLHLVYSAGNSNESELYLISLITKK-TRKIV-IG---SGEKRFPSWGAF 425 (428)
T ss_pred ce-EECCCCCEEEEEECCCCCceEEEEECCCCC-EEEee-cC---CCcccCceecCC
Confidence 67 78899987765432 3568888887665 22222 11 244566778775
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5e-05 Score=91.74 Aligned_cols=161 Identities=16% Similarity=0.351 Sum_probs=114.2
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1038 TKTALLQPF--SPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1038 V~sl~fspd--g~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
|..+.|++. -++-++......-.||++... .....+.+|. ..|+++.|. +.....+++++.|-.|..||++
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---raitd~n~~-~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---RAITDINFN-PQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---cceeccccC-CCCCcceeeccccccceeeecc
Confidence 445566553 334444444555668887532 3334456677 899999995 7788899999999999999998
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g 1192 (1262)
... .+ + ............ |+|+-..+.+++.+..+.|++||.+.+..++..+.+|... |.++......-
T Consensus 146 Sp~-~p--~---ys~~~w~s~asq----Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 146 SPH-RP--F---YSTSSWRSAASQ----VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS-VNSIDFNRFKY 214 (1081)
T ss_pred CCC-cc--e---eeeecccccCce----eeecccCcchhhhccCCceEEEeccCCCcceEEeccccee-eehHHHhhhhh
Confidence 722 21 1 122222222333 8999888899999999999999999988788899987665 77774333344
Q ss_pred CEEEEEECCCcEEEEECCCCC
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1193 ~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
..+.+++.||+|+.||.....
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred hhhcccCCCCceeeecccccc
Confidence 578899999999999987543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.1e-05 Score=91.00 Aligned_cols=205 Identities=15% Similarity=0.195 Sum_probs=139.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg-~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
.+++..+..+|.|+-+|.++.-| +.|-|+... ..-+-+....+ -.|-++.|+..+...+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 35678899999999999988655 556676543 33333332222 356778897555556666665666667899865
Q ss_pred CCC-cceEEeeeeeccCCCCcccccceeEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC
Q 000836 1114 QKD-KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1191 (1262)
Q Consensus 1114 ~~g-~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~-Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~ 1191 (1262)
+.. ..+ -.+-+|...|++ +.|+++..- +++++.|..+..||+++...++..+..-... -+.+.+.-.+
T Consensus 101 ss~~aIe-----f~lhghsraitd----~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~ 170 (1081)
T KOG0309|consen 101 SSSNAIE-----FVLHGHSRAITD----INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKD 170 (1081)
T ss_pred CCccceE-----EEEecCccceec----cccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccC
Confidence 222 222 235689999999 899987765 4555889999999999976466665544443 5667444445
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEecc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
++++++ +....|++||.|.+..+.+.++ +|...|.++.|... ....+.+.+ ++.++|||..
T Consensus 171 p~vlas-shg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 171 PNVLAS-SHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cchhhh-ccCCceEEEeccCCCcceEEec---ccceeeehHHHhhh-hhhhhcccCCCCceeeeccc
Confidence 555554 5557799999999886666554 47789999999876 233455555 6699999964
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0026 Score=77.42 Aligned_cols=170 Identities=10% Similarity=0.015 Sum_probs=105.1
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---CeEEEEEcCCCCCcceEEeeeeeccCCCCcc
Q 000836 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1262)
Q Consensus 1058 ~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V 1134 (1262)
.|.++|...+. ...+..+. ..+....|+ +||+.|+..+.+ ..|.+|++.. ++.+.+ ......+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~---~~~~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~--g~~~~l------~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR---EPILSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDT--GRREQI------TNFEGLN 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCC---CceeeeeEC--CCCCEEEEEEcCCCCCEEEEEECCC--CCEEEc------cCCCCCc
Confidence 47788887443 34444454 578899997 899888766543 3688889865 443322 2222223
Q ss_pred cccceeEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--cEEEEE
Q 000836 1135 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1208 (1262)
Q Consensus 1135 ~sv~l~v~wsp~~~~Llsg-g~Dg--~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DG--sVrIWD 1208 (1262)
.. ..|+|+|..++.+ ..++ .|.+||+.++. ...+..+... .... .|+++|+.++..+. +| .|.++|
T Consensus 246 ~~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 246 GA----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CC----eEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEE
Confidence 34 7899999988754 3344 68888998877 3445444332 4555 68899987766553 34 466677
Q ss_pred CCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-C-C--ceEEEec
Q 000836 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-K-C--LPSFSDL 1256 (1262)
Q Consensus 1209 lrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-d-d--~I~~WDL 1256 (1262)
+.+++ . ..+ ...+ .......|+|+ |+.|+..+ . + .+.+||+
T Consensus 318 ~~~g~-~-~~l-t~~~--~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 318 VNGGR-A-ERV-TFVG--NYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CCCCC-E-EEe-ecCC--CCccceEECCC--CCEEEEEEccCCceEEEEEEC
Confidence 76655 2 222 1221 22345789999 77776655 2 2 5667775
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=76.04 Aligned_cols=183 Identities=20% Similarity=0.230 Sum_probs=152.5
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHH---HhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHH
Q 000836 473 QCHRFRALVLLGRFLDMGPWAVDLA---LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFI 549 (1262)
Q Consensus 473 ~~~rlral~lL~~fld~gpwAv~la---ls~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~ 549 (1262)
+..+..|+.-|--++ --...| ++.|+.+-++..|+++..++|+.++++++.+....|-+|...+..++...++
T Consensus 97 le~ke~ald~Le~lv----e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 97 LEDKEDALDNLEELV----EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHH----HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 445788888777666 344444 5889999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhh
Q 000836 550 RFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQ 629 (1262)
Q Consensus 550 ~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~ 629 (1262)
.+|...+. ...|.=|-|.++.+.++++.||...+..+-+..+...|+.- +.+..++.=++.+++.|......-+
T Consensus 173 ~~ls~~~~-~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-----~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 173 KILSSDDP-NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-----NTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHccCCC-chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-----CcchHHHHHHHHHHHHHHHhhhhhh
Confidence 99984443 56678999999999999999999999988899999999821 2678889999999999998866666
Q ss_pred HhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccc
Q 000836 630 TIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1262)
Q Consensus 630 ~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~ 665 (1262)
...-..+++..+..+..-..-+++-+++-++=+++.
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 666666777777778888888899888888887773
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=87.97 Aligned_cols=162 Identities=12% Similarity=0.149 Sum_probs=114.5
Q ss_pred CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC--Ccce------EEeeeeeccCCCCcccccceeEEEcCCCCEEEE
Q 000836 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK--DKQK------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~--g~~~------lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Lls 1152 (1262)
....++.|. ....++++|+.||.++|..+.+.. .+.. -.+--+++.||...|.. +.|+.....|-+
T Consensus 15 vkL~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v----vTWNe~~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV----VTWNENNQKLTT 88 (1189)
T ss_pred ceEEEEEEc--ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE----EEeccccccccc
Confidence 578999996 778899999999999999986521 1111 01112678899988887 999998888888
Q ss_pred EeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEE
Q 000836 1153 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1232 (1262)
Q Consensus 1153 gg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sl 1232 (1262)
+..+|.|.||-+-.+.++...+.....+.|.++ +|..+|..+.....||.|.|=.+....---+ .++ ..-...+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-sWn~dG~kIcIvYeDGavIVGsvdGNRIwgK---eLk--g~~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-SWNLDGTKICIVYEDGAVIVGSVDGNRIWGK---ELK--GQLLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEE-EEcCCCcEEEEEEccCCEEEEeeccceecch---hcc--hheccce
Confidence 888999999999998865555666555558899 8899999999999999887766653321111 111 1234577
Q ss_pred EEecCCCCCEEEEecC-CceEEEec
Q 000836 1233 SFQPGLDPAKVNGTPK-CLPSFSDL 1256 (1262)
Q Consensus 1233 afsp~~~g~~LaSgSd-d~I~~WDL 1256 (1262)
.|+++ .+.++.+-. +.+.++|.
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDN 185 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecc
Confidence 88888 444444433 35556654
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=73.20 Aligned_cols=155 Identities=20% Similarity=0.233 Sum_probs=130.8
Q ss_pred hhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHH
Q 000836 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1262)
Q Consensus 503 fpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~ 582 (1262)
+|-+.--.++...|-|.-+.+-+.-.+-...+.+ |+++-+|..-.+.+|++.+. +.|..||++|+....|+|.-|..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~~l~~~~~--~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLGYLENSDA--ELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHHHhcCCcH--HHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444445556777888888888888877886 89999999999999988875 99999999999999999999999
Q ss_pred HHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcC--CCHHHHHHHHHHH
Q 000836 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSL 660 (1262)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sPeVRaa~v~al 660 (1262)
.++.|+...++..|.. +..-.+|+-++++++.|+-.+..+.....+.+-...|...+++ .++..+.=+++.+
T Consensus 162 v~E~~~L~~Ll~~ls~------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILSS------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHcc------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999983 5556799999999999999999998888877778889999988 5666677788899
Q ss_pred hhcccc
Q 000836 661 GTLLDI 666 (1262)
Q Consensus 661 s~~v~~ 666 (1262)
+.++..
T Consensus 236 ~~Ll~~ 241 (342)
T KOG2160|consen 236 SLLLQE 241 (342)
T ss_pred HHHHHh
Confidence 999843
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=81.94 Aligned_cols=193 Identities=13% Similarity=0.177 Sum_probs=122.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEeecCCCcEEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~---------------~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa 1098 (1262)
...+..|+.|+....++++|+.||.++|..+.+.. .-+++.+|+ +.|.-+.|. .....|-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~---~sV~vvTWN--e~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN---ASVMVVTWN--ENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc---ceEEEEEec--ccccccc
Confidence 34568899999999999999999999999887531 123567888 899999995 5567788
Q ss_pred EEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEE--------EEeCCCC---
Q 000836 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM--------LWDLEKE--- 1167 (1262)
Q Consensus 1099 TgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~Ir--------IWDlrs~--- 1167 (1262)
|...+|.|-||-++.+.--.+++ -....+.|.+ ++|+-+|..|...-.||.|. ||.-+-+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMi-----NnRnKSvV~S----msWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMI-----NNRNKSVVVS----MSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL 158 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHh-----hCcCccEEEE----EEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe
Confidence 88899999999998622212222 1112334444 88888887766665555543 4432110
Q ss_pred --------------------c----------------eeeEeecCCCC---CCeeEEEEE-------cCCCCEEEEEECC
Q 000836 1168 --------------------Q----------------QMVNPIPSSSD---CSISALTAS-------QVHGGQLAAGFVD 1201 (1262)
Q Consensus 1168 --------------------~----------------~~v~ti~~hs~---~~VtsLa~~-------s~~g~lLatGs~D 1201 (1262)
+ .|.....+..+ ..|-.+.++ .|+.+.|+.+..+
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 0 01111111000 012233222 3577899999999
Q ss_pred CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1202 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1202 GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
|.+.|-.-.+.+.++-.-. .-.|.+..|+++ |..|+.++
T Consensus 239 Gr~QiMR~eND~~Pvv~dt-----gm~~vgakWnh~--G~vLAvcG 277 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT-----GMKIVGAKWNHN--GAVLAVCG 277 (1189)
T ss_pred ceehhhhhcCCCCCeEEec-----ccEeecceecCC--CcEEEEcc
Confidence 9988754444333332211 145889999999 88998877
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0027 Score=76.36 Aligned_cols=146 Identities=8% Similarity=0.168 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeee
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~ 1126 (1262)
...++-|...|.|.+|+...|+....+..... .+.|+++.+. .+-..|-+++.|+.+..|+... . .++ +.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h-~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~--~--~~~---~~ 139 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKH-YGNVNEILDA--QRLGCIYSVGADLKVVYILEKE--K--VII---RI 139 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCC-CCcceeeecc--cccCceEecCCceeEEEEeccc--c--eee---ee
Confidence 34677788899999999999998888874321 2789999986 6677899999999999999976 2 222 45
Q ss_pred ccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCC-----CCEEEEE-EC
Q 000836 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH-----GGQLAAG-FV 1200 (1262)
Q Consensus 1127 l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~-----g~lLatG-s~ 1200 (1262)
+.+....+.+ ++.+|+++.+++++ +.|++||+++.+ .+.+|++|.+. |.++ .|-.. |.+|+++ ..
T Consensus 140 ~~~~~~~~~s----l~is~D~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~-v~t~-~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 140 WKEQKPLVSS----LCISPDGKILLTAS--RQIKVLDIETKE-VVITFTGHGSP-VRTL-SFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred eccCCCccce----EEEcCCCCEEEecc--ceEEEEEccCce-EEEEecCCCcc-eEEE-EEEEeccccccceeeecccc
Confidence 5556666666 88899988888775 689999999999 99999999986 9998 55444 5555554 44
Q ss_pred CCcEEEEECCC
Q 000836 1201 DGSVRLYDVRT 1211 (1262)
Q Consensus 1201 DGsVrIWDlrs 1211 (1262)
+.-+.+|-++.
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 55677887654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0033 Score=77.05 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=97.9
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-CC--eEEEEEcCCCCCcceEEeeeeeccCCCCcc
Q 000836 1058 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1262)
Q Consensus 1058 ~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-DG--~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V 1134 (1262)
.|.++|..... .+.+..+. ..+.+..|+ +||+.|+..+. +| .|.+||+.. ++...+ ....+ ..
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~---~~~~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~t--g~~~~l---t~~~g---~~ 264 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSP---EPLMSPAWS--PDGRKLAYVSFENRKAEIFVQDIYT--QVREKV---TSFPG---IN 264 (448)
T ss_pred EEEEEeCCCCC-ceEeecCC---CcccCceEC--CCCCEEEEEEecCCCcEEEEEECCC--CCeEEe---cCCCC---Cc
Confidence 56777876433 23444444 578889997 89988876654 33 577788765 443222 11222 22
Q ss_pred cccceeEEEcCCCCEEEEE-eCCCe--EEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCc--EEEEE
Q 000836 1135 RCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLYD 1208 (1262)
Q Consensus 1135 ~sv~l~v~wsp~~~~Llsg-g~Dg~--IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DGs--VrIWD 1208 (1262)
.. ..|+|++..|+.+ +.++. |.+||+.+++ +..+..+... .... .|+++|+.++..+. +|. |.++|
T Consensus 265 ~~----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~-~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GA----PRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAI-DTEP-SWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CC----eeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988765 55554 7788988776 4445444332 5566 78899987766553 444 55567
Q ss_pred CCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1209 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1209 lrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
+.+++ . ..+ ...+ ......+|+|+ |+.|+..+
T Consensus 337 l~~g~-~-~~L-t~~g--~~~~~~~~SpD--G~~l~~~~ 368 (448)
T PRK04792 337 LASGK-V-SRL-TFEG--EQNLGGSITPD--GRSMIMVN 368 (448)
T ss_pred CCCCC-E-EEE-ecCC--CCCcCeeECCC--CCEEEEEE
Confidence 76655 2 222 2222 22345789999 77776654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0032 Score=83.10 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=122.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------------C--------CcEEEEeeCCCC-------------
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYE---------------E--------DTLLNSFDNHDF------------- 1078 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~---------------t--------g~~l~~~~~h~~------------- 1078 (1262)
+.+|.+++|+||+..|+..+.+|+|.+-+-. . |+....|++...
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4689999999999999999988888875421 0 111111211110
Q ss_pred --------CCCCeEEEEEeecCCCcEEEEEeC---C---CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEc
Q 000836 1079 --------PDKGISKLCLVNELDVSLLLVASC---N---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1144 (1262)
Q Consensus 1079 --------~~~~ItsL~fsn~~dg~lLaTgS~---D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~ws 1144 (1262)
....-..|+|- .||.++++.+- + ..+|||+.. |.. . ...+ .+.++.-.++|.
T Consensus 200 ~~d~~~~s~dd~~~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re---G~L--~----stSE---~v~gLe~~l~Wr 265 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE---GEL--Q----STSE---PVDGLEGALSWR 265 (928)
T ss_pred ccccCccccCCCceEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC---ceE--E----eccc---cCCCccCCccCC
Confidence 01234568894 89999999875 3 467788764 332 2 1111 222222238999
Q ss_pred CCCCEEEEEe---CCCeEEEEeCCCCceeeEeecC---CCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCcee-e
Q 000836 1145 QQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV-C 1217 (1262)
Q Consensus 1145 p~~~~Llsgg---~Dg~IrIWDlrs~~~~v~ti~~---hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v-~ 1217 (1262)
|.|..|++.. +...|.+|.- ++. .-..|.. +.+..|..| .|+.++.+|+....|. |.+|-+.+..... .
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfEr-NGL-rhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFER-NGL-RHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEec-CCc-EeeeEecCCCCCCceeeEE-EECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 9998888873 2455666653 333 2233322 233348999 8999999999988666 9999998765322 2
Q ss_pred eecCCCCCCCCeEEEEEecCCCCCEEEEecC-CceEEEec
Q 000836 1218 STRPHTQQVERVVGISFQPGLDPAKVNGTPK-CLPSFSDL 1256 (1262)
Q Consensus 1218 ~~~~~~gH~~~V~slafsp~~~g~~LaSgSd-d~I~~WDL 1256 (1262)
.+ .+. ....+..+.|+|. ....|...+. +.+...++
T Consensus 342 ei-~~~-~~~~~~~~~Wdpe-~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 342 EI-RFS-SSESVNFVKWDPE-KPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EE-Ecc-CCCCCCceEECCC-CCCEEEEEecCCcEEEEEE
Confidence 22 221 1234556999997 5566655554 54444443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00076 Score=83.89 Aligned_cols=184 Identities=10% Similarity=0.093 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeee
Q 000836 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1262)
Q Consensus 1046 dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~ 1125 (1262)
++..++.|+-...+..+|+.+++..+...-.. +.|+-|+. +++++.+|...|+|.+-|.++ .+.+ +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s----~~~i---h 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMRY----NNRNLFCGDTRGTVFLRDPNS----FETI---H 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---CceEEEEe----cCcEEEeecccceEEeecCCc----Ccee---e
Confidence 44567778778888899999887776665555 45777776 578999999999999999876 2223 6
Q ss_pred eccCCCCcccccceeEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEE
Q 000836 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGE---------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1196 (1262)
Q Consensus 1126 ~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~---------Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLa 1196 (1262)
++..|.+.+.. |.-+|+.|+++|. |..|+|||+|+.+ .+.-+.-+.+. .-+...+.-...++
T Consensus 212 t~~aHs~siSD------fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P--~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 212 TFDAHSGSISD------FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP--QFLRFHPSLTTRLA 282 (1118)
T ss_pred eeeccccceee------eeccCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc--hhhhhcccccceEE
Confidence 77888887755 4456889988864 5679999999988 77777666553 22212233455788
Q ss_pred EEECCCcEEEEECCCCCce-eeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEe
Q 000836 1197 AGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSD 1255 (1262)
Q Consensus 1197 tGs~DGsVrIWDlrs~~~~-v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WD 1255 (1262)
+++..|...+-|..+-..+ .... .....++.+.++.++++ +..|+.|. +|.|.+|-
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~-~v~p~~s~i~~fDiSsn--~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVK-MVNPNGSGISAFDISSN--GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccceeeccccccCCCcccee-EEccCCCcceeEEecCC--CceEEEecccCcEeeec
Confidence 8888999999994322111 1111 11122356999999999 89999988 56898885
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0035 Score=84.11 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=105.4
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeeCC---------C---CCCCCeEEEEEeecCCCc-EEEEEeC
Q 000836 1037 GTKTALLQPF-SPIVVAADENERIKIWNYEEDTLLNSFDNH---------D---FPDKGISKLCLVNELDVS-LLLVASC 1102 (1262)
Q Consensus 1037 ~V~sl~fspd-g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h---------~---~~~~~ItsL~fsn~~dg~-lLaTgS~ 1102 (1262)
.+..++|+|+ +.++++.+.++.|++||..++... .+.+. . ......+.|+++ +++. ++++-+.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs--pdG~~LYVADs~ 760 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS--PDLKELYIADSE 760 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEe--CCCCEEEEEECC
Confidence 4678999995 555566667889999999877543 22211 0 001234568896 6766 6667777
Q ss_pred CCeEEEEEcCCCCCcceEEee--------eeeccCCCCc----ccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTA--------FSSIQGHKPG----VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa--------~~~l~~h~~~----V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~ 1170 (1262)
++.|++||... +....+.. ...+....+. .......++++++|..+++-+.++.|++||..++. .
T Consensus 761 n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v 837 (1057)
T PLN02919 761 SSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V 837 (1057)
T ss_pred CCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E
Confidence 89999999875 22221110 0000000000 00001127788877765555789999999998876 4
Q ss_pred eEeecCCC-------------CCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 000836 1171 VNPIPSSS-------------DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1171 v~ti~~hs-------------~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
. ++.+.. -.....| +++++|+++++-+.++.|++||+++++
T Consensus 838 ~-tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 T-TLAGTGKAGFKDGKALKAQLSEPAGL-ALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred E-EEeccCCcCCCCCcccccccCCceEE-EEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 3 332211 0125677 778899999999999999999998765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.02 Score=65.69 Aligned_cols=207 Identities=12% Similarity=0.100 Sum_probs=132.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CcEEE--EeeCCCCC-------CCCeEEEEEeecCCCcEEEEEe-CC
Q 000836 1036 KGTKTALLQPFSPIVVAADE-NERIKIWNYEE-DTLLN--SFDNHDFP-------DKGISKLCLVNELDVSLLLVAS-CN 1103 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~-dg~I~VWD~~t-g~~l~--~~~~h~~~-------~~~ItsL~fsn~~dg~lLaTgS-~D 1103 (1262)
.++.-+++++++++|+++.. .|.|.|+-+.+ |.... ....|... ...+....+. +++++|++.. .-
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t--P~~~~l~v~DLG~ 166 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT--PDGRYLVVPDLGT 166 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC--CCCCEEEEeecCC
Confidence 45588999999999999874 58899999865 43221 12223210 1226777785 8998888875 23
Q ss_pred CeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeEEEEeCCCCc---eeeEee---cC
Q 000836 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQ---QMVNPI---PS 1176 (1262)
Q Consensus 1104 G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~---~~v~ti---~~ 1176 (1262)
-.|.+|+... ++......... .....-+. +.|+|++...++..+ +++|.+|...... ..++.+ +.
T Consensus 167 Dri~~y~~~d--g~L~~~~~~~v--~~G~GPRH----i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 167 DRIFLYDLDD--GKLTPADPAEV--KPGAGPRH----IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred ceEEEEEccc--Ccccccccccc--CCCCCcce----EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 5789999975 54432222122 22333455 899999999888866 8999999988742 122222 22
Q ss_pred C--CCCCeeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCC--ce
Q 000836 1177 S--SDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC--LP 1251 (1262)
Q Consensus 1177 h--s~~~VtsLa~~s~~g~lLatGs~-DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd--~I 1251 (1262)
. ......+| ..+++|++|.++.. ..+|-+|.+...............+...-....|+++ +++|+.+..+ ++
T Consensus 239 dF~g~~~~aaI-his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~--g~~Liaa~q~sd~i 315 (346)
T COG2706 239 DFTGTNWAAAI-HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS--GRFLIAANQKSDNI 315 (346)
T ss_pred ccCCCCceeEE-EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC--CCEEEEEccCCCcE
Confidence 1 11136677 77899999988754 3478888776543222222222233456788999999 8899988843 66
Q ss_pred EEEe
Q 000836 1252 SFSD 1255 (1262)
Q Consensus 1252 ~~WD 1255 (1262)
.++.
T Consensus 316 ~vf~ 319 (346)
T COG2706 316 TVFE 319 (346)
T ss_pred EEEE
Confidence 6653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=55.76 Aligned_cols=39 Identities=26% Similarity=0.560 Sum_probs=35.9
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1067 g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
++++.++.+|. +.|++|+|+ +++.+|++|+.||+|++||
T Consensus 1 g~~~~~~~~h~---~~i~~i~~~--~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS---SSINSIAWS--PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS---SSEEEEEEE--TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC---CcEEEEEEe--cccccceeeCCCCEEEEEC
Confidence 36788999999 899999997 7899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0081 Score=67.07 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=109.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCC----CCCCCeEEEEEeecCC-----CcEEEEEeCCCeEEEE
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD----FPDKGISKLCLVNELD-----VSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~----~~~~~ItsL~fsn~~d-----g~lLaTgS~DG~IrIW 1109 (1262)
..++|+||+.+||.+...|+|+|+|+.. ..+..+.... .....|..|.|. +.. ...|++-..+|.++=|
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl-~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFL-EYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEee-ccccccccceeEEEEeccceeeeE
Confidence 5789999999999999999999999984 3333333211 112567778886 222 2367777789999888
Q ss_pred EcCCC-CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1110 KDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1110 D~~~~-~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
-+... ..+......+.....+...|.+ +.|+|..+.|++||.... +.+. -.+...+ +++=...
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~----~vy~p~h~LLlVgG~~~~------~~~~-----s~a~~~G-LtaWRiL 188 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINS----AVYHPKHRLLLVGGCEQN------QDGM-----SKASSCG-LTAWRIL 188 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeE----EEEcCCCCEEEEeccCCC------CCcc-----ccccccC-ceEEEEc
Confidence 76431 1122222222333344567777 899999899998875322 0000 0011111 3222112
Q ss_pred cCCCCEE-EEEECCCcE------EEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1189 QVHGGQL-AAGFVDGSV------RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1189 s~~g~lL-atGs~DGsV------rIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
+....+. ++.+.|+.. .+|.+-+.. .+.....-...|..|..+|+ |..||+.. .|.+.+|++.-
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~----~fs~~~~~~d~i~kmSlSPd--g~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFK----FFSRQGQEQDGIFKMSLSPD--GSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCCcEEEccccCccccccccccceeecccee----eeeccccCCCceEEEEECCC--CCEEEEEEcCCeEEEEecCc
Confidence 2222222 222222221 122211111 11000112468999999999 89999988 66999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0081 Score=79.43 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=132.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEE
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIW----NYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1107 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VW----D~~tg~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~Ir 1107 (1262)
....|.++.|-++...++.+..+|.|.+. |..+.. .+..+ . .+|.+++|+ ||+.+|+....+|+|.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d---~GI~a~~WS--PD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---D---SGILAASWS--PDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---c---CcEEEEEEC--CCcCEEEEEeCCCEEE
Confidence 34679999999999999999999999999 555432 22222 2 689999998 9999999999999988
Q ss_pred EEEcCC-----------CCCcceEEe--------eeeeccC---------CC------Ccc--cccceeEEEcCCCCEEE
Q 000836 1108 IWKDYD-----------QKDKQKLVT--------AFSSIQG---------HK------PGV--RCSNVVVDWQQQSGYLY 1151 (1262)
Q Consensus 1108 IWD~~~-----------~~g~~~lvs--------a~~~l~~---------h~------~~V--~sv~l~v~wsp~~~~Ll 1151 (1262)
+....- .-+..+.++ .|+.-.+ .. +.+ .+....++|..||.+++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 765421 011111111 0111000 00 000 11223489999999998
Q ss_pred EEeC------CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCceeeeec-C
Q 000836 1152 ASGE------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTR-P 1221 (1262)
Q Consensus 1152 sgg~------Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~---DGsVrIWDlrs~~~~v~~~~-~ 1221 (1262)
+++- -+.+|||+-+ +. +........+--.++ +|.|.|++||+.-. ...|.+|....-+ - ..+. .
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l-~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-h-geF~l~ 299 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGAL-SWRPSGNLIASSQRLPDRHDVVFFERNGLR-H-GEFTLR 299 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCc-cCCCCCCEEEEEEEcCCCcEEEEEecCCcE-e-eeEecC
Confidence 8853 2689999854 44 333333333323456 89999999998764 3456667654322 1 1111 1
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1222 HTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1222 ~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
.......|..+.|+++ +..|+.--.+.|.+|-.
T Consensus 300 ~~~~~~~v~~l~Wn~d--s~iLAv~~~~~vqLWt~ 332 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSD--SEILAVWLEDRVQLWTR 332 (928)
T ss_pred CCCCCceeeEEEECCC--CCEEEEEecCCceEEEe
Confidence 1233567999999999 99999888888999964
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0061 Score=75.73 Aligned_cols=258 Identities=16% Similarity=0.188 Sum_probs=180.3
Q ss_pred HHHHhhcCCCCCCCCcccchhHHHhccchhHHHHHH--HHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHH
Q 000836 446 FEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF 523 (1262)
Q Consensus 446 fe~wL~~g~~~~~pp~~lPiVLqvLlS~~~rlral~--lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvF 523 (1262)
++.+|+-......-|...|++.+.|..+....|.+. .|+|.+....-++.++.+.++++.++..|.++..++...++=
T Consensus 62 L~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~ 141 (503)
T PF10508_consen 62 LKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIK 141 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHH
Confidence 555555333222234566777788888777666654 678888877788888999999999999999999999999999
Q ss_pred HHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCC
Q 000836 524 IWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603 (1262)
Q Consensus 524 Iwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~ 603 (1262)
++.+|+...+..+ .++..++...+.+.+...+-....|... ++..++...++.-..|.+.|+++.++..|.
T Consensus 142 ~L~~l~~~~~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~e--l~v~i~~~S~~~~~~~~~sgll~~ll~eL~------ 212 (503)
T PF10508_consen 142 ALKKLASHPEGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYE--LLVEIASHSPEAAEAVVNSGLLDLLLKELD------ 212 (503)
T ss_pred HHHHHhCCchhHH-HHhCcchHHHHHHHHhccCHHHHHHHHH--HHHHHHhcCHHHHHHHHhccHHHHHHHHhc------
Confidence 9999998766554 6888888888888886633213455443 466778888999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhc--cccCcccCCCCCCCCCCC
Q 000836 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL--LDIGFDSCRDGVEGDEEC 681 (1262)
Q Consensus 604 ~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~--v~~~~~~~~~~~~~~~~~ 681 (1262)
+.+.+|+.-++=+|+.|.. .+.+-..-.+.++..+|..++.+..-.-|-..++..|.+ .|.- ...
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l-----------a~~ 279 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL-----------ARV 279 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH-----------Hhc
Confidence 7899999999999999999 556666667788999999998655333255555555542 2211 010
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHhhhh
Q 000836 682 DDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQ 725 (1262)
Q Consensus 682 ~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~ 725 (1262)
...+....=..+...|..+....++..+.=+.-.++.+...-++
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 11111111123334556666677777776666666665544443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0088 Score=74.65 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=123.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCC-eEEEEEeecCCCcEEEEEeCCC-----eEEEEEcCCCC
Q 000836 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG-ISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQK 1115 (1262)
Q Consensus 1042 ~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~-ItsL~fsn~~dg~lLaTgS~DG-----~IrIWD~~~~~ 1115 (1262)
+|++.+..+|.|+.+|.|.+.+-. -+.++.|+.+. .. |+.+... ...++|++-+.|+ .|+||++...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccC
Confidence 467888999999999988777744 35558888887 44 5555443 3446777776664 58999997643
Q ss_pred Cc--ceEEeeeeeccCC----CCcccccceeEEEcCCCCEEEEEeCCCeEEEE--eCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1116 DK--QKLVTAFSSIQGH----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1116 g~--~~lvsa~~~l~~h----~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIW--Dlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
+. +..+...+..... ..++.. ++.+.+-..+++|=.+|.|..+ |+-+++.....+......+||.+ .
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~----l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL-~ 178 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASS----LAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL-A 178 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceE----EEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee-E
Confidence 22 2333222222211 122333 7778888888888889988877 44333312222333333359999 6
Q ss_pred EcCCCCE--EEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1188 SQVHGGQ--LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1188 ~s~~g~l--LatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
+..++.. |++. ...|.+|.+.... +.. ..+..|+..+.|..+++. ...+++|+...+.|+|.
T Consensus 179 ~~~d~~s~lFv~T--t~~V~~y~l~gr~-p~~--~~ld~~G~~lnCss~~~~--t~qfIca~~e~l~fY~s 242 (933)
T KOG2114|consen 179 LRSDGKSVLFVAT--TEQVMLYSLSGRT-PSL--KVLDNNGISLNCSSFSDG--TYQFICAGSEFLYFYDS 242 (933)
T ss_pred EecCCceeEEEEe--cceeEEEEecCCC-cce--eeeccCCccceeeecCCC--CccEEEecCceEEEEcC
Confidence 6666665 4433 3579999997433 221 234556788999999988 55566666666777764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=73.38 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEc
Q 000836 1033 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~ 1111 (1262)
.++..|..++|+|+.. ++..++-+..|+|.|+++..++..+..++ .+++++|. -.+.+++.+|-..|.|.|||+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~wSC~wD-lde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QIWSCCWD-LDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cceeeeec-cCCcceeEEeccCceEEEEEc
Confidence 4556788999999877 78889999999999999999998888776 79999996 456788999999999999999
Q ss_pred CC
Q 000836 1112 YD 1113 (1262)
Q Consensus 1112 ~~ 1113 (1262)
+.
T Consensus 266 R~ 267 (463)
T KOG1645|consen 266 RQ 267 (463)
T ss_pred cC
Confidence 86
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0089 Score=65.81 Aligned_cols=183 Identities=10% Similarity=0.004 Sum_probs=116.4
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccC
Q 000836 1050 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG 1129 (1262)
Q Consensus 1050 Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~ 1129 (1262)
+..++.|.++++.+++-+..- +..|.+. -.+.+++++ +|+.++++.+....|..|.+... + ..++ +..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~--~~~h~~~-~~~ns~~~s--nd~~~~~~Vgds~~Vf~y~id~~-s-ey~~---~~~-- 198 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNK--FAVHNQN-LTQNSLHYS--NDPSWGSSVGDSRRVFRYAIDDE-S-EYIE---NIY-- 198 (344)
T ss_pred eeeccCCcceeEEEEecCccc--ceeeccc-cceeeeEEc--CCCceEEEecCCCcceEEEeCCc-c-ceee---eeE--
Confidence 455666888888887744222 2233311 237788887 79999999999999999999762 2 2222 111
Q ss_pred CCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe----ecCCCCCCeeEEEEEcCCCC--EEEEEECCCc
Q 000836 1130 HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP----IPSSSDCSISALTASQVHGG--QLAAGFVDGS 1203 (1262)
Q Consensus 1130 h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t----i~~hs~~~VtsLa~~s~~g~--lLatGs~DGs 1203 (1262)
.......+++..|++....++++..||++.|||+|....+... -+.|.++ +..+ .|++.|. +|.-.-.-+.
T Consensus 199 -~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa-~R~c-~Fsl~g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 199 -EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA-FRVC-RFSLYGLLDLLFISEHFSR 275 (344)
T ss_pred -ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc-eEEE-EecCCCcceEEEEecCcce
Confidence 1122234566899999999999999999999999986523322 3456665 8888 7776554 4444444578
Q ss_pred EEEEECCCCCceeeeec---CCCCCC-CCeEEEEEecCCCCCEEEEecCC
Q 000836 1204 VRLYDVRTPDMLVCSTR---PHTQQV-ERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1204 VrIWDlrs~~~~v~~~~---~~~gH~-~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
+.+.|+|+........- ....|. ..|.+-.|+.+ +..+.+.++.
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~--n~s~~v~~e~ 323 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE--NESNDVKNEL 323 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCC--Ccccccccch
Confidence 99999998774322211 111233 34788888777 4444444443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=71.81 Aligned_cols=245 Identities=17% Similarity=0.186 Sum_probs=178.8
Q ss_pred CcccchhHHHhcc--chhHHHHHHHHHHHhcCCHHHHHHHHhcC--ChhhhhhhcCCCchhHHHHHHHHHHHHhccChhh
Q 000836 460 PEQLPIVLQVLLS--QCHRFRALVLLGRFLDMGPWAVDLALSVG--IFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1262)
Q Consensus 460 p~~lPiVLqvLlS--~~~rlral~lL~~fld~gpwAv~lals~g--ifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~ 535 (1262)
.|-+|++.-+|-| .+-+.++...+++.- ...-|+.-....| ..|-.+.|..++.+..|-.+.-.+ ++++-|..-
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL-rnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL-RNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH-hhhcccchh
Confidence 4677876666665 344677777666543 4445555556666 899999999999988888877777 677778899
Q ss_pred hhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHH
Q 000836 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1262)
Q Consensus 536 Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1262)
|.+.+..++.+.++..|+++.. |+.-+-- ||+--|. =+|..-..-.+.|++.-++.+|.. ..+-|++..+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~-plilasV-aCIrnis-ihplNe~lI~dagfl~pLVrlL~~------~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMG-PLILASV-ACIRNIS-IHPLNEVLIADAGFLRPLVRLLRA------GDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcch-hHHHHHH-HHHhhcc-cccCcccceecccchhHHHHHHhc------CCchhhhhhHH
Confidence 9999999999999999988876 4333322 2221110 123323333578999999999973 44566887777
Q ss_pred HHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHH
Q 000836 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1262)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1262)
=.|-+|-..+...+..-.+.++..++..|+.|+.-+||.++--+++.+.-.. .+.....|..++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d---------------~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND---------------NDKEALLDSGIIP 420 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc---------------ccHHHHhhcCCcc
Confidence 7777777778788888899999999999999999999999988888775211 1123456788888
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHHh--hhhhHHHH
Q 000836 696 SLLTVVSDGSPLVRAEVAVALARFAFG--HKQHLKSI 730 (1262)
Q Consensus 696 ~ll~~~~D~sp~VR~E~~~~ls~~~~~--~~~~f~~~ 730 (1262)
.|+.+..|.|-+||--++.++..|-.. +...|+++
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999998888777654 33556653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=62.53 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=112.4
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEeeC--CCCCCCCeEEEEEeecCCCcEEEEEeCC--------CeE
Q 000836 1038 TKTALLQ-PFSPIVVAADENERIKIWNYEEDTLLNSFDN--HDFPDKGISKLCLVNELDVSLLLVASCN--------GNI 1106 (1262)
Q Consensus 1038 V~sl~fs-pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~--h~~~~~~ItsL~fsn~~dg~lLaTgS~D--------G~I 1106 (1262)
+..+.++ ++ ..++++.. +.+.++|..+++....+.. ........+++++. ++|++.++.... |.|
T Consensus 42 ~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccce
Confidence 7788888 55 55566664 5566679998854433332 11123678899996 889988887654 344
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCCCce------eeEeecCCCC
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQ------MVNPIPSSSD 1179 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs~~~------~v~ti~~hs~ 1179 (1262)
..++.. ++...+ .......+. ++|++++..|+++ +..+.|..+|+..... .+..+....+
T Consensus 118 ~~~~~~---~~~~~~------~~~~~~pNG----i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 118 YRIDPD---GKVTVV------ADGLGFPNG----IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEETT---SEEEEE------EEEESSEEE----EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred EEECCC---CeEEEE------ecCcccccc----eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 444443 232222 111223445 8999999988876 6678899999864331 1222333322
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEe-cCCCCCEEEEe
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ-PGLDPAKVNGT 1246 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafs-p~~~g~~LaSg 1246 (1262)
. .-.+ +...+|++.++....+.|.++|.. ++ ....+... ...+++++|. ++ ...+++|.
T Consensus 185 ~-pDG~-~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p---~~~~t~~~fgg~~-~~~L~vTt 244 (246)
T PF08450_consen 185 Y-PDGL-AVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELP---VPRPTNCAFGGPD-GKTLYVTT 244 (246)
T ss_dssp E-EEEE-EEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-S---SSSEEEEEEESTT-SSEEEEEE
T ss_pred C-CCcc-eEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCC---CCCEEEEEEECCC-CCEEEEEe
Confidence 2 5677 678899999999999999999997 55 44444222 2478999995 45 23344443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00097 Score=72.87 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=90.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1136 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~s 1136 (1262)
+..++|++...+ ++.........|++++-. +....++++|+.||.+-+||.+.. . + ....+..|...++.
T Consensus 159 d~~~a~~~~p~~---t~~~~~~~~~~v~~l~~h-p~qq~~v~cgt~dg~~~l~d~rn~--~--~--p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 159 DNFYANTLDPIK---TLIPSKKALDAVTALCSH-PAQQHLVCCGTDDGIVGLWDARNV--A--M--PVSLLKAHKAEIWE 228 (319)
T ss_pred cceeeecccccc---cccccccccccchhhhCC-cccccEEEEecCCCeEEEEEcccc--c--c--hHHHHHHhhhhhhh
Confidence 455666665322 221111112458888874 667788999999999999999872 1 1 12467889999999
Q ss_pred cceeEEEcCCC-CEEEEEeCCCeEEEEeCCCCc----------------eeeEe---ecCCCCCCeeEEEEEcCCCCEEE
Q 000836 1137 SNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQ----------------QMVNP---IPSSSDCSISALTASQVHGGQLA 1196 (1262)
Q Consensus 1137 v~l~v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~----------------~~v~t---i~~hs~~~VtsLa~~s~~g~lLa 1196 (1262)
+.|+|.. .+|++++.||.+..||..+.- .+++. +..--.....++..+...|..++
T Consensus 229 ----V~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lV 304 (319)
T KOG4714|consen 229 ----VHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLV 304 (319)
T ss_pred ----eeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEE
Confidence 8888854 489999999999999987421 01111 11100111344445567788888
Q ss_pred EEECCCcEEEEE
Q 000836 1197 AGFVDGSVRLYD 1208 (1262)
Q Consensus 1197 tGs~DGsVrIWD 1208 (1262)
+|+.-+.|++++
T Consensus 305 cgtd~eaIyl~~ 316 (319)
T KOG4714|consen 305 CGTDAEAIYLTR 316 (319)
T ss_pred eccccceEEEec
Confidence 888888887765
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00092 Score=62.19 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=64.7
Q ss_pred HHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcc
Q 000836 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1262)
Q Consensus 590 ~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~ 669 (1262)
+.+++.|.+ +++|.+|..++.+||++... .+...|..+++|+.|.||.+++.+||.+=
T Consensus 2 ~~L~~~l~~------~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 2 PALLQLLQN------DPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHT------SSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 567788832 89999999999999966432 23457888999999999999999999872
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHHhhc-cCCChhhHHHHHHHHH
Q 000836 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVV-SDGSPLVRAEVAVALA 717 (1262)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~-~D~sp~VR~E~~~~ls 717 (1262)
+...+..|..++ +|.+..||.+++.+|+
T Consensus 60 --------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 122334556655 4567888999998874
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=73.83 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=97.0
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE---eCCCeEEEEeCCCCc
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKEQ 1168 (1262)
Q Consensus 1092 ~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg---g~Dg~IrIWDlrs~~ 1168 (1262)
+++.+++++..+....+++........+++... .+.... +. +.+-.+.....++ |+...+.+|....+
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~---~a----i~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRP---TA----ISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCc---ce----eeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 667777777777776677765522212222111 111111 11 2333334444444 67777888887764
Q ss_pred eeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-
Q 000836 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP- 1247 (1262)
Q Consensus 1169 ~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS- 1247 (1262)
+...+-+|-+- ++.+ .+++++..++++..|+.|||-.....- .+..+ .-||+..|..+++.++ . .|+|||
T Consensus 143 -~~~~~lGhvSm-l~dV-avS~D~~~IitaDRDEkIRvs~ypa~f-~Iesf--clGH~eFVS~isl~~~--~-~LlS~sG 213 (390)
T KOG3914|consen 143 -RCEPILGHVSM-LLDV-AVSPDDQFIITADRDEKIRVSRYPATF-VIESF--CLGHKEFVSTISLTDN--Y-LLLSGSG 213 (390)
T ss_pred -Ccchhhhhhhh-hhee-eecCCCCEEEEecCCceEEEEecCccc-chhhh--ccccHhheeeeeeccC--c-eeeecCC
Confidence 45556677775 9999 889999999999999999996654332 23222 3389999999999887 3 467777
Q ss_pred CCceEEEecccc
Q 000836 1248 KCLPSFSDLIYF 1259 (1262)
Q Consensus 1248 dd~I~~WDLryf 1259 (1262)
|+++++||++.+
T Consensus 214 D~tlr~Wd~~sg 225 (390)
T KOG3914|consen 214 DKTLRLWDITSG 225 (390)
T ss_pred CCcEEEEecccC
Confidence 559999998764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0033 Score=77.79 Aligned_cols=184 Identities=12% Similarity=0.112 Sum_probs=114.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 000836 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g 1116 (1262)
.++|++++ +++++-|+.+|.|++++.. +.. .+...|. .. ..+|.+++|||.||+|-|-.+.+.+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s---~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHS---SS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccc---cc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 35666666 6789999999999999987 333 3333343 11 26899999999999999999877222
Q ss_pred cceEEeeeeeccCCCCcccccceeEEEcCC-----CCEEEEEeCCCeEEEEeCCCCce--eeEeecCCCCCCeeEEEEEc
Q 000836 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-----SGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1117 ~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~-----~~~Llsgg~Dg~IrIWDlrs~~~--~v~ti~~hs~~~VtsLa~~s 1189 (1262)
.. . -.....+.+ ++++|+ .+.+++||.-| +.++.-+--.+ .+ .+....+. |.++ .|
T Consensus 106 ~~--~------~df~rpiks----ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~-I~~i-~W- 168 (846)
T KOG2066|consen 106 IT--Q------YDFKRPIKS----IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGP-IHSI-KW- 168 (846)
T ss_pred ce--e------EecCCccee----EEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccc-eEEE-Ee-
Confidence 11 1 122334555 666665 56788888888 65554222110 12 23344444 9999 55
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCceeeeecCCC--CCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--QQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1190 ~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~--gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
.|+++|-+..+| |+|||+.+++.+...-.... .....-..+.|++. . .|+.|=.++|++..++
T Consensus 169 -~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 169 -RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--D-RLVIGWGDSVKICSIK 233 (846)
T ss_pred -cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC--C-eEEEecCCeEEEEEEe
Confidence 688999988887 89999987764332211111 11123456888877 3 4555555566665544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0007 Score=52.98 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=35.0
Q ss_pred eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1170 ~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
++.++.+|.+. |++| .++++++.|++|+.||.|++||
T Consensus 3 ~~~~~~~h~~~-i~~i-~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSS-INSI-AWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSS-EEEE-EEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCc-EEEE-EEecccccceeeCCCCEEEEEC
Confidence 78899999997 9999 8899999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=66.73 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=124.3
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC-eEEEEEcCCCCCcceE
Q 000836 1043 LQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKL 1120 (1262)
Q Consensus 1043 fsp-dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG-~IrIWD~~~~~g~~~l 1120 (1262)
|++ +|.+++..+ .|...|.+...+..++. ++. +.|.-..+. .+++-++.|..|| .+-|||... ++.
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~---~~VrY~r~~--~~~e~~vigt~dgD~l~iyd~~~--~e~-- 394 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQV--GKK---GGVRYRRIQ--VDPEGDVIGTNDGDKLGIYDKDG--GEV-- 394 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEc--CCC---CceEEEEEc--cCCcceEEeccCCceEEEEecCC--ceE--
Confidence 443 678888887 68888887766654432 233 567777775 6777899999999 999999976 433
Q ss_pred EeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC
Q 000836 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1200 (1262)
Q Consensus 1121 vsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~ 1200 (1262)
+.+....+.|.. +..+++|..++++.+...+.+.|+.++. ++.+......-|+.. .|+++++.+|-+.-
T Consensus 395 ----kr~e~~lg~I~a----v~vs~dGK~~vvaNdr~el~vididngn--v~~idkS~~~lItdf-~~~~nsr~iAYafP 463 (668)
T COG4946 395 ----KRIEKDLGNIEA----VKVSPDGKKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDF-DWHPNSRWIAYAFP 463 (668)
T ss_pred ----EEeeCCccceEE----EEEcCCCcEEEEEcCceEEEEEEecCCC--eeEecccccceeEEE-EEcCCceeEEEecC
Confidence 233445566766 7888999999999999999999999998 555554444459999 88999999998877
Q ss_pred CC----cEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000836 1201 DG----SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNG 1245 (1262)
Q Consensus 1201 DG----sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaS 1245 (1262)
+| .|++||+..++ ....- +.. +.=.+-+|.|+ +++|.-
T Consensus 464 ~gy~tq~Iklydm~~~K-iy~vT-T~t---a~DfsPaFD~d--~ryLYf 505 (668)
T COG4946 464 EGYYTQSIKLYDMDGGK-IYDVT-TPT---AYDFSPAFDPD--GRYLYF 505 (668)
T ss_pred cceeeeeEEEEecCCCe-EEEec-CCc---ccccCcccCCC--CcEEEE
Confidence 65 68999998766 33222 222 22245578888 666643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=70.34 Aligned_cols=151 Identities=7% Similarity=0.152 Sum_probs=101.7
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEE--EeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCc
Q 000836 1056 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV--ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1262)
Q Consensus 1056 dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaT--gS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~ 1133 (1262)
..++++.+++...+...+. .. ++|.+++|+ +++..+++ |..=-++.|||++- +. + +.-..+.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~-k~---GPVhdv~W~--~s~~EF~VvyGfMPAkvtifnlr~---~~--v-----~df~egp 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLL-KE---GPVHDVTWS--PSGREFAVVYGFMPAKVTIFNLRG---KP--V-----FDFPEGP 313 (566)
T ss_pred cceEEEEEecCceEEEecC-CC---CCceEEEEC--CCCCEEEEEEecccceEEEEcCCC---CE--e-----EeCCCCC
Confidence 3467788877444444332 23 799999997 77766554 45667899999953 32 2 1112233
Q ss_pred ccccceeEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC------CCcE
Q 000836 1134 VRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV------DGSV 1204 (1262)
Q Consensus 1134 V~sv~l~v~wsp~~~~Llsgg~---Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~------DGsV 1204 (1262)
-+. +-|+|.|++++.+|. -|.|-|||+.+.+ ++..+..... .+..|+|+|.+|+|++. |..+
T Consensus 314 RN~----~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~t----t~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 314 RNT----AFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-LIAKFKAANT----TVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred ccc----eEECCCCCEEEEeecCCCCCceEEEeccchh-hccccccCCc----eEEEEcCCCcEEEEEeccccEEecCCe
Confidence 344 789999999888876 4889999999988 8888876433 23378999999999864 6889
Q ss_pred EEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1205 rIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
+||+..... +... .+. .....+.|.|.
T Consensus 385 KiwhytG~~--l~~~-~f~---sEL~qv~W~P~ 411 (566)
T KOG2315|consen 385 KIWHYTGSL--LHEK-MFK---SELLQVEWRPF 411 (566)
T ss_pred EEEEecCce--eehh-hhh---HhHhheeeeec
Confidence 999985332 2111 121 14667777766
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.062 Score=65.34 Aligned_cols=179 Identities=7% Similarity=-0.053 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCCE-EEEEeC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEE-EEeCCC--eEEEE
Q 000836 1037 GTKTALLQPFSPI-VVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1109 (1262)
Q Consensus 1037 ~V~sl~fspdg~~-Lasgs~---dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLa-TgS~DG--~IrIW 1109 (1262)
....-.|+|+|+. ++..+. +..|.++|+.+++...-.. .. +......|+ +||+.++ +.+.+| .|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~---g~~~~~~~S--PDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ---GMLVVSDVS--KDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC---CcEEeeEEC--CCCCEEEEEEccCCCcEEEEE
Confidence 4567899999984 554332 3569999998886544332 22 455667897 7887554 444454 56666
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-D--g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
|... +.. +.+..+...... ..|+|+|..|+-.++ . ..|.+.|+.+++ . ..+...... ..
T Consensus 263 dl~~--g~~------~~LT~~~~~d~~----p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~-~rlt~~g~~---~~- 324 (419)
T PRK04043 263 DTNT--KTL------TQITNYPGIDVN----GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-V-EQVVFHGKN---NS- 324 (419)
T ss_pred ECCC--CcE------EEcccCCCccCc----cEECCCCCEEEEEECCCCCceEEEEECCCCC-e-EeCccCCCc---Cc-
Confidence 6644 332 223333222223 679999998877754 2 258888988777 3 233222111 22
Q ss_pred EEcCCCCEEEEEECC---------CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec
Q 000836 1187 ASQVHGGQLAAGFVD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~D---------GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS 1247 (1262)
.++++|+.++..... ..|.+.|+.+++ . +.+ +..+ ......|+|+ |+.++-.+
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~-~~L-T~~~---~~~~p~~SPD--G~~I~f~~ 386 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-I-RRL-TANG---VNQFPRFSSD--GGSIMFIK 386 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-e-EEC-CCCC---CcCCeEECCC--CCEEEEEE
Confidence 678999987766543 257777887765 2 222 2221 2235889999 66665444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.014 Score=72.49 Aligned_cols=142 Identities=15% Similarity=0.263 Sum_probs=100.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCC-----CcEEEEEeCCCeEEEEEcCCCCCcceE
Q 000836 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASCNGNIRIWKDYDQKDKQKL 1120 (1262)
Q Consensus 1046 dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~d-----g~lLaTgS~DG~IrIWD~~~~~g~~~l 1120 (1262)
.|.++++|+.||+|.|-.+.+.+...++.-+. .+.++++. ++ ...+++|+.-| +.++....-..+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r----piksial~--Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKR----PIKSIALH--PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCC----cceeEEec--cchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 58999999999999999998887766665554 78889886 44 57899999998 777665431111111
Q ss_pred EeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCC-----CeeEEEEEcCCCCEE
Q 000836 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-----SISALTASQVHGGQL 1195 (1262)
Q Consensus 1121 vsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~-----~VtsLa~~s~~g~lL 1195 (1262)
.+....+.|.+ +.|. |..|+-++++| |+|+|+.+++ .+..++-.... .-..+ .|.+ ...+
T Consensus 155 -----~l~~~eG~I~~----i~W~--g~lIAWand~G-v~vyd~~~~~-~l~~i~~p~~~~R~e~fpphl-~W~~-~~~L 219 (846)
T KOG2066|consen 155 -----VLSEGEGPIHS----IKWR--GNLIAWANDDG-VKVYDTPTRQ-RLTNIPPPSQSVRPELFPPHL-HWQD-EDRL 219 (846)
T ss_pred -----eeecCccceEE----EEec--CcEEEEecCCC-cEEEeccccc-eeeccCCCCCCCCcccCCCce-EecC-CCeE
Confidence 24445677888 8894 67888888887 8999999998 77777654433 12233 4443 4566
Q ss_pred EEEECCCcEEEEECC
Q 000836 1196 AAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1196 atGs~DGsVrIWDlr 1210 (1262)
+.|-+| +|+|..++
T Consensus 220 VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIGWGD-SVKICSIK 233 (846)
T ss_pred EEecCC-eEEEEEEe
Confidence 677665 58888887
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.021 Score=73.41 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=96.7
Q ss_pred ChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhH
Q 000836 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1262)
Q Consensus 502 ifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~ 581 (1262)
.||.|+|+++++..++|.|+-.-|.......|.- . + -..+.|.+=|.+++ |..|++|.=.|+.|-. +
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-a-l---LaINtl~KDl~d~N--p~IRaLALRtLs~Ir~--~---- 135 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-A-L---LAVNTFLQDTTNSS--PVVRALAVRTMMCIRV--S---- 135 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-H-H---HHHHHHHHHcCCCC--HHHHHHHHHHHHcCCc--H----
Confidence 4999999999999999998544444443333321 0 1 12455666666554 5778777766665431 1
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHh
Q 000836 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1262)
Q Consensus 582 ~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als 661 (1262)
.+-.-+...+...|. |++|.||..+++|+.+++..+++ ...+.+....|..+|+|..|.|.+.|+.+|.
T Consensus 136 -~i~e~l~~~lkk~L~-------D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 136 -SVLEYTLEPLRRAVA-------DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred -HHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 122233444455566 88999999999999999987654 2234455667888999999999999999999
Q ss_pred hccc
Q 000836 662 TLLD 665 (1262)
Q Consensus 662 ~~v~ 665 (1262)
.+..
T Consensus 205 eI~~ 208 (746)
T PTZ00429 205 EVND 208 (746)
T ss_pred HHHH
Confidence 9863
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00019 Score=86.16 Aligned_cols=205 Identities=13% Similarity=0.163 Sum_probs=129.4
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe----CCCeEEE
Q 000836 1037 GTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----CNGNIRI 1108 (1262)
Q Consensus 1037 ~V~sl~fsp--dg~~Lasgs~dg~I~VWD~~tg~~--l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS----~DG~IrI 1108 (1262)
.+.|+++.- +..++++|..+|.|.+-......- -.....+. ..+++++|. +.|.+.|++|- .|..+.|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---r~Ct~lAwn-eLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---RPCTSLAWN-ELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---ccccccccc-cccHHHHHhhhhhhcccCCccc
Confidence 466776643 446888999999999988764321 12233444 678999995 78889999885 3678999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~ 1188 (1262)
||+.+.-..++ ..+....+......+ ++|-.+...+++|...+.+.++|+|.....+..+.+. . +..++..
T Consensus 134 wdi~s~ltvPk--e~~~fs~~~l~gqns----~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk--~-vqG~tVd 204 (783)
T KOG1008|consen 134 WDINSLLTVPK--ESPLFSSSTLDGQNS----VCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK--Y-VQGITVD 204 (783)
T ss_pred eecccccCCCc--cccccccccccCccc----cccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh--h-cccceec
Confidence 99976200111 011111122233334 8898888888888889999999999543133444332 1 4445233
Q ss_pred cCCCCEEEEEECCCcEEEEE-CCCCCceeeeecCCCC--CCCCeEEEEEecCCCCCEEEEecCC--ceEEEecc
Q 000836 1189 QVHGGQLAAGFVDGSVRLYD-VRTPDMLVCSTRPHTQ--QVERVVGISFQPGLDPAKVNGTPKC--LPSFSDLI 1257 (1262)
Q Consensus 1189 s~~g~lLatGs~DGsVrIWD-lrs~~~~v~~~~~~~g--H~~~V~slafsp~~~g~~LaSgSdd--~I~~WDLr 1257 (1262)
+-.++++++-. ||.|-+|| .+.-+.++..+ .+.. ....+..++|.|.. ...+++.+.+ .|+.+|++
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhccHHHHH-hhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEeccc
Confidence 33777887765 99999999 55555443333 1111 11248999999983 4456666644 77777764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.034 Score=66.38 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=93.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCC-Ce---EEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEee
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK-GI---SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA 1123 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~-~I---tsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa 1123 (1262)
..++.+..+|.+..+|..+|+.+.......+.+. .+ ..+.-++.-.+..+.+++.+|.+..||..+ ++..
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t--G~~~---- 264 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS--GRVL---- 264 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC--CcEE----
Confidence 4677788889999999999987765432211100 00 001000001345778888899999999976 4432
Q ss_pred eeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCc
Q 000836 1124 FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1262)
Q Consensus 1124 ~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGs 1203 (1262)
|+.-. ..... .. ..++.+++++.+|.+..+|..+++ .+.....-......+. .. .+..+++++.||.
T Consensus 265 W~~~~---~~~~~----p~--~~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~~~~~~ssp-~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 265 WKRDA---SSYQG----PA--VDDNRLYVTDADGVVVALDRRSGS-ELWKNDELKYRQLTAP-AV--VGGYLVVGDFEGY 331 (377)
T ss_pred Eeecc---CCccC----ce--EeCCEEEEECCCCeEEEEECCCCc-EEEccccccCCccccC-EE--ECCEEEEEeCCCE
Confidence 32211 11111 11 247889999999999999999988 6655532112112222 11 4568889999999
Q ss_pred EEEEECCCCCceeeee
Q 000836 1204 VRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1204 VrIWDlrs~~~~v~~~ 1219 (1262)
|.++|..+++ ....+
T Consensus 332 l~~~d~~tG~-~~~~~ 346 (377)
T TIGR03300 332 LHWLSREDGS-FVARL 346 (377)
T ss_pred EEEEECCCCC-EEEEE
Confidence 9999999888 33343
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00071 Score=57.66 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhc
Q 000836 608 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 608 P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~ 663 (1262)
|.||..++.+||.+.+..++.-.. .-..+...|..+|+|+++.||.+++++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987765554333 4445556888999999999999999999974
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.036 Score=71.75 Aligned_cols=209 Identities=15% Similarity=0.142 Sum_probs=129.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC---
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY--- 1112 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~--- 1112 (1262)
..|.++.|..+...++.+...|.|.+-|.++.... ....-. ++|.+++|+ +|+..++..+.++++.+-+-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd---~GI~aaswS--~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVD---NGISAASWS--PDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeecc---CceEEEeec--CCCcEEEEEeCCcEEEEEeccccc
Confidence 57999999999999999999999999998876432 222223 689999998 899999988888888765431
Q ss_pred -CC-------CCcceEE--------eeeeeccC---------CCC--c---ccccceeEEEcCCCCEEEEEe----CC-C
Q 000836 1113 -DQ-------KDKQKLV--------TAFSSIQG---------HKP--G---VRCSNVVVDWQQQSGYLYASG----EV-S 1157 (1262)
Q Consensus 1113 -~~-------~g~~~lv--------sa~~~l~~---------h~~--~---V~sv~l~v~wsp~~~~Llsgg----~D-g 1157 (1262)
.. .+..+.+ +.++.-.+ +.. . +.+-...|.|.-+|.++++++ .+ +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 00 0000000 01111100 000 0 111112389998888888852 24 8
Q ss_pred eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEE
Q 000836 1158 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs---~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slaf 1234 (1262)
.|+|||-+ +. +..........-.++ +|.|.|.++++-. .|+.|.+|....-..-.-.. .+......|..++|
T Consensus 223 kirV~drE-g~--Lns~se~~~~l~~~L-sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GA--LNSTSEPVEGLQHSL-SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-ch--hhcccCcccccccce-eecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-CCcccccchheeee
Confidence 99999976 43 444433333323566 7888999998853 45678888765322100001 11112244999999
Q ss_pred ecCCCCCEEEE---ecCC-ceEEEecc
Q 000836 1235 QPGLDPAKVNG---TPKC-LPSFSDLI 1257 (1262)
Q Consensus 1235 sp~~~g~~LaS---gSdd-~I~~WDLr 1257 (1262)
+.+ +..|+. ..++ .+.+|-.-
T Consensus 298 ns~--sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 298 NSN--SDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cCC--CCceeeeecccccceEEEEEec
Confidence 999 888877 4455 69999763
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.038 Score=66.13 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=122.3
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1036 KGTKTALLQPFSPIVVAAD-----------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs-----------~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
..|.-+.|||.+++|+|-+ +...++|||+.+|...+.|.....+...-.-+.|| .|+.+++--.. .
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTG-N 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec--cCCceeEEecc-c
Confidence 4588999999999999943 23579999999999988887743111112236797 78888887665 4
Q ss_pred eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC--C---CeEEEEeCCCCceeeEeecCCCC
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--V---SSIMLWDLEKEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~--D---g~IrIWDlrs~~~~v~ti~~hs~ 1179 (1262)
+|.||+... ..++. .+.+ ..+.|.. ..|+|.+..|+-=.. + ..+-+-.+.+.+ .+++-..+.-
T Consensus 327 sisIyEtps----f~lld-~Ksl--ki~gIr~----FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnV 394 (698)
T KOG2314|consen 327 SISIYETPS----FMLLD-KKSL--KISGIRD----FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNV 394 (698)
T ss_pred eEEEEecCc----eeeec-cccc--CCccccC----cccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccceee
Confidence 788998753 22210 0111 2345666 889997665543321 1 235555666665 5555544433
Q ss_pred CCeeEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec--
Q 000836 1180 CSISALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-- 1247 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs----------~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-- 1247 (1262)
+ =..| .|+.+|.+|+.-- .-..+.|+.+|..+.++... .+ ...|...+|-|. |..++.-+
T Consensus 395 s-DckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-el---ke~vi~FaWEP~--gdkF~vi~g~ 466 (698)
T KOG2314|consen 395 S-DCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-EL---KESVIAFAWEPH--GDKFAVISGN 466 (698)
T ss_pred e-ccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ec---chheeeeeeccC--CCeEEEEEcc
Confidence 2 1223 6777888776422 12246677777666444443 33 478999999999 55554433
Q ss_pred CC--ceEEEec
Q 000836 1248 KC--LPSFSDL 1256 (1262)
Q Consensus 1248 dd--~I~~WDL 1256 (1262)
+. ++.|+.+
T Consensus 467 ~~k~tvsfY~~ 477 (698)
T KOG2314|consen 467 TVKNTVSFYAV 477 (698)
T ss_pred ccccceeEEEe
Confidence 22 7777654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.1 Score=57.53 Aligned_cols=185 Identities=18% Similarity=0.180 Sum_probs=111.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeee
Q 000836 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1262)
Q Consensus 1045 pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~ 1124 (1262)
++++++++++.++.|..||..+|+.+..+.... .+..... .++..++.++.|+.|+.+|..+ |+.. |
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~----~~~~~~~---~~~~~v~v~~~~~~l~~~d~~t--G~~~----W 100 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG----PISGAPV---VDGGRVYVGTSDGSLYALDAKT--GKVL----W 100 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSS----CGGSGEE---EETTEEEEEETTSEEEEEETTT--SCEE----E
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc----cccceee---ecccccccccceeeeEecccCC--ccee----e
Confidence 367788888889999999999999998887633 1111112 2456667777888999999876 5442 3
Q ss_pred ee-ccCC-CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCC---e------eEEEEEcCCCC
Q 000836 1125 SS-IQGH-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS---I------SALTASQVHGG 1193 (1262)
Q Consensus 1125 ~~-l~~h-~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~---V------tsLa~~s~~g~ 1193 (1262)
+. .... ...... ...... .++.++++..++.|..+|+++++ .+.......... + .+- ..-.++
T Consensus 101 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 174 (238)
T PF13360_consen 101 SIYLTSSPPAGVRS-SSSPAV--DGDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGS-PVISDG- 174 (238)
T ss_dssp EEEE-SSCTCSTB---SEEEE--ETTEEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEE-EECCTT-
T ss_pred eecccccccccccc-ccCceE--ecCEEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCcceeeecccccc-eEEECC-
Confidence 32 2111 111111 111222 37888888889999999999999 877776643220 1 111 122244
Q ss_pred EEEEEECCCc-EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1194 QLAAGFVDGS-VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1194 lLatGs~DGs-VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
.+..+..+|. +.+ |..+++.. ... ... .+..+ .... +..|+.++ ++.+..||+..
T Consensus 175 ~v~~~~~~g~~~~~-d~~tg~~~-w~~-~~~----~~~~~-~~~~--~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLATGEKL-WSK-PIS----GIYSL-PSVD--GGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEECCTSSEEEE-ETTTTEEE-EEE-CSS-----ECEC-EECC--CTEEEEEETTTEEEEEETTT
T ss_pred EEEEEcCCCeEEEE-ECCCCCEE-EEe-cCC----CccCC-ceee--CCEEEEEeCCCEEEEEECCC
Confidence 6666777775 555 99988833 222 221 12221 3345 45666555 66999999763
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.21 Score=59.13 Aligned_cols=198 Identities=8% Similarity=0.026 Sum_probs=116.8
Q ss_pred CeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1037 GTKTALLQPFSPIVVAAD-E-NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs-~-dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
....++++|+|++|++.. . +..|.|.|+.+++.+..+.... +..-... .+.... +-+.||......+..
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t---~e~~~~-~~~~Dg~~~~v~~d~- 176 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPT---ANDTFF-MHCRDGSLAKVGYGT- 176 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEe---cCCccE-EEeecCceEEEEecC-
Confidence 345789999999999876 3 6899999999999998887533 2222222 222222 444577766655544
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCc----eeeEeecCC-------CCCCe
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQ----QMVNPIPSS-------SDCSI 1182 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~----~~v~ti~~h-------s~~~V 1182 (1262)
+++. .......+.+-...+..- -.+.+ ++..++++.. |.|.+-|+.... .....+... .+. .
T Consensus 177 ~g~~-~~~~~~vf~~~~~~v~~r---P~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g-~ 250 (352)
T TIGR02658 177 KGNP-KIKPTEVFHPEDEYLINH---PAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG-W 250 (352)
T ss_pred CCce-EEeeeeeecCCccccccC---CceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc-c
Confidence 2331 121111111111111110 11234 6777777766 999999964432 033332211 111 3
Q ss_pred eEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCC-EEEEec--CC
Q 000836 1183 SALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA-KVNGTP--KC 1249 (1262)
Q Consensus 1183 tsLa~~s~~g~lLatGs----------~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~-~LaSgS--dd 1249 (1262)
.-+ .++++++.+.... ..+.|.++|..+.+ .+..+. . ...+.+++++|+ ++ .|++.+ ++
T Consensus 251 q~i-a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~-v---G~~~~~iavS~D--gkp~lyvtn~~s~ 322 (352)
T TIGR02658 251 QQV-AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIE-L---GHEIDSINVSQD--AKPLLYALSTGDK 322 (352)
T ss_pred eeE-EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEe-C---CCceeeEEECCC--CCeEEEEeCCCCC
Confidence 446 6787877666632 12479999999888 444432 2 257899999999 66 776655 44
Q ss_pred ceEEEecc
Q 000836 1250 LPSFSDLI 1257 (1262)
Q Consensus 1250 ~I~~WDLr 1257 (1262)
.+.+.|..
T Consensus 323 ~VsViD~~ 330 (352)
T TIGR02658 323 TLYIFDAE 330 (352)
T ss_pred cEEEEECc
Confidence 78888864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.054 Score=64.44 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEeeCCCCC---------------------
Q 000836 1036 KGTKTALLQPFSPIVVAADEN---------------ERIKIWNYEEDTLLNSFDNHDFP--------------------- 1079 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~d---------------g~I~VWD~~tg~~l~~~~~h~~~--------------------- 1079 (1262)
..|.-+.|+|.+++|++-+.. +.+.|||..+|..+..|.....+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 347888999999999985432 35899999988777665433211
Q ss_pred ---------------------CCCeEEEEEeecCCCcEEEE-----EeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCc
Q 000836 1080 ---------------------DKGISKLCLVNELDVSLLLV-----ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1133 (1262)
Q Consensus 1080 ---------------------~~~ItsL~fsn~~dg~lLaT-----gS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~ 1133 (1262)
...|+...|++..++..|+. +..++.++||.+.. +..... +.+..
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~--~s~l~t---k~lfk---- 222 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK--NSVLVT---KNLFK---- 222 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC--CCeeee---eeeEe----
Confidence 12344555542223333332 23455566666532 111111 11110
Q ss_pred ccccceeEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEE--EC
Q 000836 1134 VRCSNVVVDWQQQSGYLYASGE-----------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG--FV 1200 (1262)
Q Consensus 1134 V~sv~l~v~wsp~~~~Llsgg~-----------Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatG--s~ 1200 (1262)
+ .+..+.|++.|.++++--. ...+.+++++... +-... .-.+. |... +|.++++.|++. ..
T Consensus 223 ~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~-~~~~p-Vhdf-~W~p~S~~F~vi~g~~ 296 (561)
T COG5354 223 V--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEK-DLKDP-VHDF-TWEPLSSRFAVISGYM 296 (561)
T ss_pred e--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceec-ccccc-ceee-eecccCCceeEEeccc
Confidence 1 1223889998887765411 2457788877544 33332 33444 9999 788887766654 56
Q ss_pred CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-CC---ceEEEec
Q 000836 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KC---LPSFSDL 1256 (1262)
Q Consensus 1201 DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd---~I~~WDL 1256 (1262)
+-++.++|++.. +...+ . .+.=+.+.|+|+ +++++.++ ++ .+.+||.
T Consensus 297 pa~~s~~~lr~N--l~~~~--P---e~~rNT~~fsp~--~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 297 PASVSVFDLRGN--LRFYF--P---EQKRNTIFFSPH--ERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccceeecccccc--eEEec--C---CcccccccccCc--ccEEEEecCCccccceEEecc
Confidence 889999999865 22221 1 133355677777 67776666 32 6677764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=74.54 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=114.0
Q ss_pred cHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhc
Q 000836 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1262)
Q Consensus 544 ~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1262)
.++++..+|++++. -.|--+-..||.+.+|-.. +....-..++++.+..|+ ||.|.||.++|.|+|++=.
T Consensus 349 ~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEW--KERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhh
Confidence 45788888998887 6677777888999888766 333355688899999999 9999999999999999999
Q ss_pred CchhhhHhhhccCchHHHhhhhcCC-CHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHH-HHHhhc
Q 000836 624 DFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR-SLLTVV 701 (1262)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~-sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ll~~~ 701 (1262)
++...-+..-.+.++..|...+.|. .|.|-+.++.||=+|..+ ........--..+.. .+..+.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--------------~~~~~l~pYLd~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--------------CDKSILEPYLDGLMEKKLLLLL 484 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHHHHHHHHHh
Confidence 9765544455555555566666655 779999998888888722 111111111112223 556677
Q ss_pred cCCChhhHHHHHHHHHHHHHhhhhhH
Q 000836 702 SDGSPLVRAEVAVALARFAFGHKQHL 727 (1262)
Q Consensus 702 ~D~sp~VR~E~~~~ls~~~~~~~~~f 727 (1262)
..+++.|++.++.+++-+..-=+..|
T Consensus 485 ~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 485 QSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred cCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999987765433333
|
|
| >PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00032 Score=78.28 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhcccC-CCceEEEEEcCCCCCCCCC-CCeEEEecCCCC
Q 000836 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA-KGERVLFHYNGHGVPKPTA-NGEIWLFNKSYT 219 (1262)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~dp~~~~~~~~~~~~r~~~-~~~rvlfhy~ghg~p~pt~-~g~i~~f~~~~t 219 (1262)
+.+=.+.+.+.| ..+ .+.. ... ...|||.+++++.+..+-+.+ +.+.++|||-|||...+.. .+++..++.
T Consensus 20 ~~~D~~~~~~~L-~~~-gf~~-~~~-l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~--- 92 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKL-GFDV-ENI-LIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDG--- 92 (248)
T ss_dssp HHHHHHHHHHHH-HHT-TEEE-EEE-EEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSS---
T ss_pred HHHHHHHHHHHH-HHc-CCce-eec-cccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccccCCccCcccccccc---
Confidence 344445566666 222 1111 111 356999999999988886555 6789999999999775432 344444422
Q ss_pred eeeccc----hHHHhhhcC------CCeEEEEeCCchhhHHHHHHhhccCC-----------------CCCCCCCCCceE
Q 000836 220 QYIPLP----ISDLDSWLK------TPSIYVFDCSAAGMIVNAFIELHDWG-----------------ASNYSGSTRDCI 272 (1262)
Q Consensus 220 ~y~p~~----~~~l~~~~~------~p~~~v~Dc~~Ag~i~~~~~~~~~~~-----------------~~~~~~~~~~~~ 272 (1262)
..+|+. +.+.+..+. .|-++|+||..+|.+........... .........+.+
T Consensus 93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (248)
T PF00656_consen 93 YLLPLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFI 172 (248)
T ss_dssp EEEEHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEE
T ss_pred eeeecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcE
Confidence 224554 344333333 34599999999999877653321110 001123556899
Q ss_pred EEEecCCcCCCCCCCCCCchhhhhcccch
Q 000836 273 LLAACEAHETLPQSEEFPADVFTSCLTTP 301 (1262)
Q Consensus 273 ~~~ac~~~e~lp~~~~lP~DlftscL~tP 301 (1262)
++.||..+|.---.+....=+||-.|..=
T Consensus 173 ~~~as~~~~~s~e~~~~~~g~ft~~L~~~ 201 (248)
T PF00656_consen 173 VLSASRPGQTSYEDSPGSGGLFTYALLEA 201 (248)
T ss_dssp EEESSSTTBCEEEECTTTEEHHHHHHHHH
T ss_pred EEEeccccceeecccCccCHHHHHHHHHH
Confidence 99999999988877778888999888543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.01 Score=74.37 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC---------CCeEEE
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---------NGNIRI 1108 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~---------DG~IrI 1108 (1262)
|+-|. .+++.+.+|+..|+|.+-|..+.+.+++|..|. +.|.++.. .|++|++++. |.-|+|
T Consensus 180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs---~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS---GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc---cceeeeec----cCCeEEEeecccccccccccchhhh
Confidence 44444 357899999999999999999999999999999 88987766 5888988875 556889
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCC-CEEEEEeCCCeEEEEe---CCCCceeeEeecCCCCCCeeE
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWD---LEKEQQMVNPIPSSSDCSISA 1184 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-~~Llsgg~Dg~IrIWD---lrs~~~~v~ti~~hs~~~Vts 1184 (1262)
||++.. +.+ ..+.-+.++ .+ +.|+|.- ..+++++..|...+-| +......+..+...... +.+
T Consensus 251 YDLRmm----ral---~PI~~~~~P----~f-lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~-i~~ 317 (1118)
T KOG1275|consen 251 YDLRMM----RAL---SPIQFPYGP----QF-LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG-ISA 317 (1118)
T ss_pred hhhhhh----hcc---CCcccccCc----hh-hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc-cee
Confidence 999761 111 111222221 12 5666643 4677778899999988 33332123333333333 888
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECC
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlr 1210 (1262)
+ .++++|+.++.|..+|.|.+|--+
T Consensus 318 f-DiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 318 F-DISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred E-EecCCCceEEEecccCcEeeecCC
Confidence 8 889999999999999999999743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.05 Score=63.98 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=92.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENE-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg-~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
+..+|.-..+.-+++-++.|..|| .+-|+|.++++..+ +...- +.|-++..+ ++|..++++...+.+-+.|+.
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l---g~I~av~vs--~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL---GNIEAVKVS--PDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc---cceEEEEEc--CCCcEEEEEcCceEEEEEEec
Confidence 456688788888888899999888 89999999776443 44444 689999997 899999999988899888997
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC----CCeEEEEeCCCCc
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE----VSSIMLWDLEKEQ 1168 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~----Dg~IrIWDlrs~~ 1168 (1262)
+ ++.+++ -+....-|+. ++|+|++..++-+=- ...|+++|+..++
T Consensus 432 n--gnv~~i-----dkS~~~lItd----f~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 432 N--GNVRLI-----DKSEYGLITD----FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred C--CCeeEe-----cccccceeEE----EEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 7 666544 1233455777 899999999887732 4569999999887
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.057 Score=67.20 Aligned_cols=210 Identities=16% Similarity=0.143 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccchhHHHhccchh-H-HHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHH
Q 000836 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCH-R-FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1262)
Q Consensus 441 ~qLtafe~wL~~g~~~~~pp~~lPiVLqvLlS~~~-r-lral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr 518 (1262)
+.|+.++..+.--+....-|. |+++..|.+... + .-++.+|.+.++...+... ..++.+++.+.|+.+.+.+|
T Consensus 20 ~~L~~l~~~~~~~~~l~~~~~--~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 20 EALPELKTELSSSPFLERLPE--PVLFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred HHHHHHHHHHhhhhHHHhchH--HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHH
Confidence 556666666553332222222 234454554411 1 2233367777765555433 56888999999999999999
Q ss_pred HHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcC
Q 000836 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1262)
Q Consensus 519 ~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1262)
..++..+.++.........-+...+.+...+..|.++|. +....|+=+|+.++. ++.+....+..++...+..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~- 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMS- 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHh-
Confidence 999999999887765444345556778888899988886 778899999999986 4556666678888888888887
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccc
Q 000836 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1262)
Q Consensus 599 ~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~ 665 (1262)
.++..+|-=++=++.++....+++-......++...++..|.+....||..++-.|+.+..
T Consensus 171 ------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 171 ------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred ------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 5566666666677888888888888889999999999999999999999999999999983
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.002 Score=79.64 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=107.4
Q ss_pred EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC
Q 000836 1069 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1262)
Q Consensus 1069 ~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~ 1148 (1262)
..++|..|+ ...||++|+ .+.++|+.|+..|.|++|++.+ |..+ .....|.+.|+. +.=+.+|.
T Consensus 1093 ~w~~frd~~---~~fTc~afs--~~~~hL~vG~~~Geik~~nv~s--G~~e-----~s~ncH~SavT~----vePs~dgs 1156 (1516)
T KOG1832|consen 1093 SWRSFRDET---ALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSS--GSME-----ESVNCHQSAVTL----VEPSVDGS 1156 (1516)
T ss_pred cchhhhccc---cceeeEEee--cCCceEEeeeccceEEEEEccC--cccc-----cccccccccccc----ccccCCcc
Confidence 345566777 789999998 7889999999999999999987 4332 346788888887 66666788
Q ss_pred EEEEEeC-CC-eEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCC
Q 000836 1149 YLYASGE-VS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1262)
Q Consensus 1149 ~Llsgg~-Dg-~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~ 1226 (1262)
.+++++. .. ...+|++.+--...+++... .++ .|+.+-..-+.|+....+.|||+.+...+...+..-.+.+
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed-----~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDED-----KAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccccc-----cee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 7777744 32 56799987643356666542 334 4544444444455556789999998874443232211112
Q ss_pred CCeEEEEEecCCCCCEEEEecCCceEEEeccc
Q 000836 1227 ERVVGISFQPGLDPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1227 ~~V~slafsp~~~g~~LaSgSdd~I~~WDLry 1258 (1262)
-.=+.++|+|. ...++- ++ .+||+|.
T Consensus 1231 y~~n~a~FsP~--D~LIln--dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1231 YSNNLAHFSPC--DTLILN--DG--VLWDVRI 1256 (1516)
T ss_pred hhccccccCCC--cceEee--Cc--eeeeecc
Confidence 22367889998 555542 22 5799875
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0065 Score=56.43 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=64.4
Q ss_pred HHHHHhh-cCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcC
Q 000836 546 AYFIRFL-DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1262)
Q Consensus 546 ~yf~~~L-~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1262)
+.+++.| ++++ +..|..++.+|+.+. ...+.+.+..+++ |++|.||.+++.+||++-.
T Consensus 2 ~~L~~~l~~~~~--~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~i~~- 60 (88)
T PF13646_consen 2 PALLQLLQNDPD--PQVRAEAARALGELG-----------DPEAIPALIELLK-------DEDPMVRRAAARALGRIGD- 60 (88)
T ss_dssp HHHHHHHHTSSS--HHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-------SSSHHHHHHHHHHHHCCHH-
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC-
Confidence 4567777 4443 689999999998432 3367889999998 8999999999999998821
Q ss_pred chhhhHhhhccCchHHHhhhhcC-CCHHHHHHHHHHHh
Q 000836 625 FTEAQTIGRRADAPAIYVPLLSE-PQPEVRASAVFSLG 661 (1262)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D-~sPeVRaa~v~als 661 (1262)
..+...|..++.| ....||.+++.+||
T Consensus 61 ----------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1233467776655 67888999999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.081 Score=68.71 Aligned_cols=163 Identities=15% Similarity=0.209 Sum_probs=98.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCcEE-------------------EEeeCCCC-------------
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNY----EEDTLL-------------------NSFDNHDF------------- 1078 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~----~tg~~l-------------------~~~~~h~~------------- 1078 (1262)
.++|.+++|+||+..++..+..+++.+-+. -..+.+ ..|.+...
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 478999999999999999887787776433 111111 12221110
Q ss_pred -----CCCCeEEEEEeecCCCcEEEEE-----eCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC
Q 000836 1079 -----PDKGISKLCLVNELDVSLLLVA-----SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148 (1262)
Q Consensus 1079 -----~~~~ItsL~fsn~~dg~lLaTg-----S~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~ 1148 (1262)
..+.=++|+|- .||.++++. ..-.+|+|||... .... ...++....-+++|-|.|.
T Consensus 189 ~~~~~~~~~~~~IsWR--gDg~~fAVs~~~~~~~~RkirV~drEg---~Lns---------~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWR--GDGEYFAVSFVESETGTRKIRVYDREG---ALNS---------TSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred ccchhhccCCceEEEc--cCCcEEEEEEEeccCCceeEEEecccc---hhhc---------ccCcccccccceeecCCCC
Confidence 00122458994 899999883 3337999999852 1111 1111111111389999888
Q ss_pred EEEEE---eCCCeEEEEeCCCCce--eeEeecCCCCCCeeEEEEEcCCCCEEEE---EECCCcEEEEECCCCC
Q 000836 1149 YLYAS---GEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQVHGGQLAA---GFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1149 ~Llsg---g~Dg~IrIWDlrs~~~--~v~ti~~hs~~~VtsLa~~s~~g~lLat---Gs~DGsVrIWDlrs~~ 1213 (1262)
.+++- ++|+.|.++.-+..++ -+..++..... |..+ .|..++.+|++ ......|++|-+.+..
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~-ve~L-~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE-VEEL-AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccccccccCCcccccc-hhee-eecCCCCceeeeecccccceEEEEEecCeE
Confidence 77776 4466788886433221 22223333333 8899 88889999888 4444559999987755
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.14 Score=61.04 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-------
Q 000836 1036 KGTKTALLQPFSP--IVVA-----ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS------- 1101 (1262)
Q Consensus 1036 ~~V~sl~fspdg~--~Las-----gs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS------- 1101 (1262)
.++....|+|.++ .|+. .+..+.++||.+..+..+.+-.-.. ..=..+.|. ..|++|+.--
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---~~~~qLkW~--~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---VSGVQLKWQ--VLGKYLLVLVMTHTKSN 248 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe---ecccEEEEe--cCCceEEEEEEEeeecc
Confidence 5577788888643 3443 4567889999998776654422211 112357884 5666554321
Q ss_pred ----CCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeEeec
Q 000836 1102 ----CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1102 ----~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg--~Dg~IrIWDlrs~~~~v~ti~ 1175 (1262)
....+.|+++.. ... +...+..+.|.+ +.|.|.+..+++.+ ..-.+.++|++..- +..++
T Consensus 249 KsyfgesnLyl~~~~e--~~i------~V~~~~~~pVhd----f~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~P 314 (561)
T COG5354 249 KSYFGESNLYLLRITE--RSI------PVEKDLKDPVHD----FTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYFP 314 (561)
T ss_pred cceeccceEEEEeecc--ccc------ceecccccccee----eeecccCCceeEEecccccceeecccccce--EEecC
Confidence 124567777753 222 222355678888 99999888766553 57889999998764 55555
Q ss_pred CCCCCCeeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEec-----
Q 000836 1176 SSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP----- 1247 (1262)
Q Consensus 1176 ~hs~~~VtsLa~~s~~g~lLatGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgS----- 1247 (1262)
.... ..+ .|++++++++.++- .|.+-+||....-.++..+.. ....-+.|+|+ ++++.+.-
T Consensus 315 e~~r---NT~-~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~wspd--~qF~~~~~ts~k~ 383 (561)
T COG5354 315 EQKR---NTI-FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWSPD--GQFYDTDTTSEKL 383 (561)
T ss_pred Cccc---ccc-cccCcccEEEEecCCccccceEEeccCCceEEEEEeec-----CCceEeeccCC--ceEEEecCCCccc
Confidence 4333 334 68888887776443 388999999766545534422 22455789999 77776554
Q ss_pred --CCceEEEec
Q 000836 1248 --KCLPSFSDL 1256 (1262)
Q Consensus 1248 --dd~I~~WDL 1256 (1262)
|+.+++||+
T Consensus 384 ~~Dn~i~l~~v 394 (561)
T COG5354 384 RVDNSIKLWDV 394 (561)
T ss_pred ccCcceEEEEe
Confidence 338999997
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.12 Score=61.56 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCC--CeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeee
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK--GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1124 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~--~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~ 1124 (1262)
+..++.++.+|.|..||.++|+.+..+....+... ...+.... +..++.++.+|.+..+|..+ ++.. |
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~----~~~v~~~~~~g~v~ald~~t--G~~~----W 214 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA----DGGVLVGFAGGKLVALDLQT--GQPL----W 214 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE----CCEEEEECCCCEEEEEEccC--CCEe----e
Confidence 45677777899999999999998887765431100 00112221 24678888899999999876 4322 2
Q ss_pred eeccCC----CC-----cccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1125 SSIQGH----KP-----GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1125 ~~l~~h----~~-----~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
+.-... .. .+.+. ... .++.+++++.+|.+..||..+++ .+....... .... ...+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~---p~~--~~~~vy~~~~~g~l~a~d~~tG~-~~W~~~~~~---~~~p---~~~~~~v 282 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGD---PVV--DGGQVYAVSYQGRVAALDLRSGR-VLWKRDASS---YQGP---AVDDNRL 282 (377)
T ss_pred eeccccCCCCCchhhhhccCCc---cEE--ECCEEEEEEcCCEEEEEECCCCc-EEEeeccCC---ccCc---eEeCCEE
Confidence 211000 00 01110 111 36788889999999999999988 666554321 1222 1245677
Q ss_pred EEEECCCcEEEEECCCCC
Q 000836 1196 AAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs~~ 1213 (1262)
++++.||.|..+|..+++
T Consensus 283 yv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 778899999999998887
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.089 Score=63.51 Aligned_cols=178 Identities=16% Similarity=0.021 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCHHHHHHH----H----hcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHh
Q 000836 480 LVLLGRFLDMGPWAVDLA----L----SVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF 551 (1262)
Q Consensus 480 l~lL~~fld~gpwAv~la----l----s~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~ 551 (1262)
+..|++.++-.+-.|..+ | .....+.++++|.+..+.+|...+-.+++.- ..-+...+..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~ 155 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAA 155 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHH
Confidence 445555666555433332 2 2233778888888777777776665554411 1235677788
Q ss_pred hcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHh
Q 000836 552 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631 (1262)
Q Consensus 552 L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~ 631 (1262)
|.+.+ +..|+-++-+|+.+-. ......+...+. |.+|.||.+++-+|+.+-. +++-..
T Consensus 156 L~d~d--~~Vra~A~raLG~l~~-----------~~a~~~L~~al~-------d~~~~VR~aA~~al~~lG~--~~A~~~ 213 (410)
T TIGR02270 156 LTHED--ALVRAAALRALGELPR-----------RLSESTLRLYLR-------DSDPEVRFAALEAGLLAGS--RLAWGV 213 (410)
T ss_pred hcCCC--HHHHHHHHHHHHhhcc-----------ccchHHHHHHHc-------CCCHHHHHHHHHHHHHcCC--HhHHHH
Confidence 87666 4889999999988662 234444666677 8999999999999988732 221111
Q ss_pred --------------------hh--ccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHH
Q 000836 632 --------------------GR--RADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRA 689 (1262)
Q Consensus 632 --------------------~~--~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1262)
+. ...+.+.|..++.|+. ||.+++.+||.+- .
T Consensus 214 l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg-~----------------------- 267 (410)
T TIGR02270 214 CRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVG-D----------------------- 267 (410)
T ss_pred HHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcC-C-----------------------
Confidence 11 1134456666777754 8888888888653 1
Q ss_pred HHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000836 690 EISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 690 e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~ 720 (1262)
...+..|+..+.|.. +|+-+..+++++.
T Consensus 268 -p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 268 -VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred -cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 112345566666654 8888888887765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.58 Score=53.91 Aligned_cols=202 Identities=14% Similarity=0.093 Sum_probs=120.7
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCc-EEEEECCCCcEEEEeeCCCCCCCCeE-EEEEeecCCCcEEEEEe-----CCCeEEE
Q 000836 1037 GTKTALLQPFSP-IVVAADENER-IKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVAS-----CNGNIRI 1108 (1262)
Q Consensus 1037 ~V~sl~fspdg~-~Lasgs~dg~-I~VWD~~tg~~l~~~~~h~~~~~~It-sL~fsn~~dg~lLaTgS-----~DG~IrI 1108 (1262)
+...++.+|... .++.+-.-|+ ..+||..+++....+.... +...+ --.|+ +||++|.|.- ..|.|-|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--gRHFyGHg~fs--~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--GRHFYGHGVFS--PDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--CCEEecCEEEc--CCCCEEEEeccccCCCcEEEEE
Confidence 455788899544 5555665554 7889999998887765432 11111 23676 8999998864 4589999
Q ss_pred EEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eC------CC-----------eEEEEeCCCCcee
Q 000836 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GE------VS-----------SIMLWDLEKEQQM 1170 (1262)
Q Consensus 1109 WD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~------Dg-----------~IrIWDlrs~~~~ 1170 (1262)
||... ....+ ..+..+.-.-.. +.|.|++..|+++ |. .| .+..-|.++++ .
T Consensus 82 yd~~~---~~~ri---~E~~s~GIGPHe----l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-l 150 (305)
T PF07433_consen 82 YDAAR---GYRRI---GEFPSHGIGPHE----LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-L 150 (305)
T ss_pred EECcC---CcEEE---eEecCCCcChhh----EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-e
Confidence 99973 23333 233444444455 6778888888777 21 12 24445666666 6
Q ss_pred eEeec----CCCCCCeeEEEEEcCCCCEEEEEECCCc-------EEEEECCCCCceeeee-cCCCCCCCCeEEEEEecCC
Q 000836 1171 VNPIP----SSSDCSISALTASQVHGGQLAAGFVDGS-------VRLYDVRTPDMLVCST-RPHTQQVERVVGISFQPGL 1238 (1262)
Q Consensus 1171 v~ti~----~hs~~~VtsLa~~s~~g~lLatGs~DGs-------VrIWDlrs~~~~v~~~-~~~~gH~~~V~slafsp~~ 1238 (1262)
+.+.. .|..+ |..| .+..+|.+++..-..|. |-+++....-.....- .....-.+.|-+|+++++
T Consensus 151 l~q~~Lp~~~~~lS-iRHL-a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~- 227 (305)
T PF07433_consen 151 LEQVELPPDLHQLS-IRHL-AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRD- 227 (305)
T ss_pred eeeeecCccccccc-eeeE-EecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCC-
Confidence 66532 25555 8888 67777777666654443 2233322211000000 001122467999999999
Q ss_pred CCCEEEEec--CCceEEEecc
Q 000836 1239 DPAKVNGTP--KCLPSFSDLI 1257 (1262)
Q Consensus 1239 ~g~~LaSgS--dd~I~~WDLr 1257 (1262)
+..++.+| .+.+.+||..
T Consensus 228 -g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 228 -GRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred -CCEEEEECCCCCEEEEEECC
Confidence 77776666 4499999864
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.029 Score=72.24 Aligned_cols=140 Identities=12% Similarity=0.152 Sum_probs=98.4
Q ss_pred cHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhc
Q 000836 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1262)
Q Consensus 544 ~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1262)
++...++.+.+.+. ++|.|+-+-|..+-+..++-- --+++.+.+=++ |++|.+|..++.+|+.+-.
T Consensus 69 LF~dVvk~~~S~d~--elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~-------d~Np~IRaLALRtLs~Ir~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTDL--ELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTT-------NSSPVVRALAVRTMMCIRV 134 (746)
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcC-------CCCHHHHHHHHHHHHcCCc
Confidence 45555666666765 999999999988766555411 123455555566 8999999999999998765
Q ss_pred CchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccC
Q 000836 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1262)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1262)
. .+-+.+...+-.+|.|++|-|||.|++++.++.....+. ..+......|..++.|
T Consensus 135 ~-------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-----------------v~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 135 S-------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-----------------FYQQDFKKDLVELLND 190 (746)
T ss_pred H-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-----------------ccccchHHHHHHHhcC
Confidence 3 222333446778899999999999999999987432110 1122334456667789
Q ss_pred CChhhHHHHHHHHHHHHH
Q 000836 704 GSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 704 ~sp~VR~E~~~~ls~~~~ 721 (1262)
.+|+|..-++.++..+..
T Consensus 191 ~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999999998877753
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.66 Score=52.40 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=109.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCC
Q 000836 1036 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1036 ~~V~sl~fspdg~-~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~ 1114 (1262)
..++.+.|+|+.+ ++++.+..+.|..++.+ |+.++++.-.. .+..-.|++. .++.++++--.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g--~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG--FGDYEGITYL--GNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS---SSEEEEEE---STTEEEEEETTTTEEEEEEE---
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC--CCCceeEEEE--CCCEEEEEEcCCCcEEEEEEecc
Confidence 3499999999766 55667777888888874 88888876543 1467789996 56666666656899999998542
Q ss_pred CCcceE--Eeeeee-c-cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeeEee-----c---CCCC
Q 000836 1115 KDKQKL--VTAFSS-I-QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---EQQMVNPI-----P---SSSD 1179 (1262)
Q Consensus 1115 ~g~~~l--vsa~~~-l-~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs---~~~~v~ti-----~---~hs~ 1179 (1262)
...... +..+.. + ..++...-+ ++|.+.++.++++-...-.+++.++. .. .+... . ....
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EG----la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEG----LAYDPKTNRLFVAKERKPKRLYEVNGFPGGF-DLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EE----EEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEE----EEEcCCCCEEEEEeCCCChhhEEEccccCcc-ceeeccccccccccceec
Confidence 111111 111111 1 123344566 89999999998886665566666553 11 11111 1 1112
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCC------CCCeEEEEEecCCCCCEEEEecCC
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ------VERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH------~~~V~slafsp~~~g~~LaSgSdd 1249 (1262)
.+.+++..+..+++++....+..|.++|. .++ ++..+.-..+. -..--+|+|.++ |.+.+++--|
T Consensus 172 -d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvsEpN 242 (248)
T PF06977_consen 172 -DLSGLSYDPRTGHLLILSDESRLLLELDR-QGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD--GNLYIVSEPN 242 (248)
T ss_dssp ----EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTT
T ss_pred -cccceEEcCCCCeEEEEECCCCeEEEECC-CCC-EEEEEEeCCcccCcccccCCccEEEECCC--CCEEEEcCCc
Confidence 26777555566778888888899999994 455 33333212111 124678999999 7766666544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.007 Score=67.50 Aligned_cols=171 Identities=13% Similarity=0.266 Sum_probs=112.3
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEeeCCCCC--CCCeEEEEEeecCCCcEEEEEeCCC
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASCNG 1104 (1262)
Q Consensus 1030 w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg---~~l~~~~~h~~~--~~~ItsL~fsn~~dg~lLaTgS~DG 1104 (1262)
+.+.|...+.++.|+.+...+++++ +=.|.+|+++-- --+..++.|+.. -..|++..|+ +.....+.-.++.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFh-p~~cn~fmYSsSkG 244 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFH-PEMCNVFMYSSSKG 244 (460)
T ss_pred ccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccC-HhHcceEEEecCCC
Confidence 4466777899999999999998887 788999998743 223344555421 1358888996 56677888889999
Q ss_pred eEEEEEcCCCC---CcceEEe------eeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec
Q 000836 1105 NIRIWKDYDQK---DKQKLVT------AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1105 ~IrIWD~~~~~---g~~~lvs------a~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~ 1175 (1262)
.|++-|++... ...++.. ....+.+....|.. +.|++.|.++++- +--+|++||++..+.++.+++
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD----~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISD----FKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcc----eEEcCCCcEEEEe-ccceEEEEecccccCCceeec
Confidence 99999998410 1111000 00111222344445 8899988777754 446799999999887999997
Q ss_pred CCCCC-----------Cee---EEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1176 SSSDC-----------SIS---ALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1176 ~hs~~-----------~Vt---sLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
.|..- +|. .+ .++.+...+++|+.....-+|-
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFei-sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEI-SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEE-EecCCcccccccccccceeeec
Confidence 66321 122 23 4566666777777666655654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.037 Score=68.34 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCC----------CcEEEEEeCCCeEE
Q 000836 1038 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD----------VSLLLVASCNGNIR 1107 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~d----------g~lLaTgS~DG~Ir 1107 (1262)
-.++.|+|.| ++|-|+ ...|.|-|..+-+.++.+.-|. ..|+.+.|.+.+- .-+|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4577888866 566676 6789999999999999999998 8999999973221 23567777889999
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEc---CCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~ws---p~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt 1183 (1262)
+||... +.. ..-+..|...+.. ++|- .+. ..+++-....+|.+|+..+++ .+......... ..
T Consensus 93 l~d~~~--~s~-----~~~l~~~~~~~qd----l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~i-Ls 159 (1062)
T KOG1912|consen 93 LVDFVL--ASV-----INWLSHSNDSVQD----LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEI-LS 159 (1062)
T ss_pred EEEehh--hhh-----hhhhcCCCcchhh----eeeeeccCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcc-ee
Confidence 999976 221 1345677788877 5553 344 244444677889999999999 77777665554 66
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEC
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1262)
Q Consensus 1184 sLa~~s~~g~lLatGs~DGsVrIWDl 1209 (1262)
|+.+.+-+.+.|..-+..|.|.+-+.
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEec
Confidence 67555566666666666777777654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0085 Score=64.13 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHH
Q 000836 607 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 686 (1262)
Q Consensus 607 ~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~ 686 (1262)
+|.||.-++++||-|.-.++.. -+.....+...|+|++|.||+.++..|++++... +.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~-----ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------------~i---- 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL-----VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-------------MI---- 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH-----HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------------ce----
Confidence 4889999999999998877552 2333458999999999999999999999999432 11
Q ss_pred HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 687 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 687 ~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.....+...++.++.|.++.||.-+..++..+...
T Consensus 59 -k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 59 -KVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 11223335566777999999999999999999887
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.059 Score=65.62 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=95.8
Q ss_pred cEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE----eCCCeE----EEEEcCCCCCcceEEeeeeec
Q 000836 1058 RIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA----SCNGNI----RIWKDYDQKDKQKLVTAFSSI 1127 (1262)
Q Consensus 1058 ~I~VWD~~tg--~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg----S~DG~I----rIWD~~~~~g~~~lvsa~~~l 1127 (1262)
++.++....+ +.+..+.... .+ .++.|+ ..++..+.|. +.+|.+ ++|+... .+.+.+ +...+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~---dP-l~~~Fs-~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--~klqrv-svtsi 256 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTEN---DP-LDVEFS-LNQPYQIHTVEQSISVKGEPSADSCIYECSR--NKLQRV-SVTSI 256 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecC---Cc-EEEEcc-CCCCcEEEEEEEecCCCCCceeEEEEEEeec--CceeEE-EEEEE
Confidence 4555555433 3334443333 33 457776 3344444432 334443 3556543 333222 11222
Q ss_pred cCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEE
Q 000836 1128 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207 (1262)
Q Consensus 1128 ~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIW 1207 (1262)
.....+.+ ++++|+...++.|+.||.|.+||..++. ... ... .-..+.+ +|+++|.+|++|+..|.+.+|
T Consensus 257 -pL~s~v~~----ca~sp~E~kLvlGC~DgSiiLyD~~~~~-t~~-~ka--~~~P~~i-aWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 -PLPSQVIC----CARSPSEDKLVLGCEDGSIILYDTTRGV-TLL-AKA--EFIPTLI-AWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred -ecCCcceE----EecCcccceEEEEecCCeEEEEEcCCCe-eee-eee--cccceEE-EEcCCCcEEEEEcCCceEEEE
Confidence 34445666 8999999999999999999999998776 222 222 1225666 899999999999999999999
Q ss_pred ECCCCCceee------------eecCCCCCCCCeEEEEEecC
Q 000836 1208 DVRTPDMLVC------------STRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1208 Dlrs~~~~v~------------~~~~~~gH~~~V~slafsp~ 1237 (1262)
|+........ .+..+-.+...+..+.|.+.
T Consensus 327 D~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 327 DMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred EeecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 9864331111 11122234556778888854
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.037 Score=69.01 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcC
Q 000836 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDS 554 (1262)
Q Consensus 475 ~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~ 554 (1262)
.+.+++.=|-...-+|.-. .-+|+.+++++++...+.|.++-..|..+...++.-- + -..+.+.+=|.+
T Consensus 22 ~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~---l~~n~l~kdl~~ 90 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--I---LIINSLQKDLNS 90 (526)
T ss_dssp HHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--H---HHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--H---HHHHHHHHhhcC
Confidence 3555655333333334311 2679999999999999999996666777776665511 1 133445555665
Q ss_pred CCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhc
Q 000836 555 MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRR 634 (1262)
Q Consensus 555 ~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~ 634 (1262)
++ +..|.+|-=+|+.++ .++ +-..+...+...|. |++|.||.-+++|+.++....++.- +
T Consensus 91 ~n--~~~~~lAL~~l~~i~--~~~-----~~~~l~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~~----~ 150 (526)
T PF01602_consen 91 PN--PYIRGLALRTLSNIR--TPE-----MAEPLIPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDLV----E 150 (526)
T ss_dssp SS--HHHHHHHHHHHHHH---SHH-----HHHHHHHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCCH----H
T ss_pred CC--HHHHHHHHhhhhhhc--ccc-----hhhHHHHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHHH----H
Confidence 55 577888888888876 221 23456777888888 8999999999999999998765521 1
Q ss_pred cCchHHHhhhhcCCCHHHHHHHHHHHhhc
Q 000836 635 ADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 635 ~~~~~~l~~ll~D~sPeVRaa~v~als~~ 663 (1262)
......+..+|.|..|.|+.+|+.++..+
T Consensus 151 ~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 151 DELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp GGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 11466899999999999999999999988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.39 Score=52.86 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=90.5
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcc
Q 000836 1055 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1134 (1262)
Q Consensus 1055 ~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V 1134 (1262)
++|+|..||..+|+.+......... ........ .++..+++++.++.|..||..+ |+.. |+.-. ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~t--G~~~----W~~~~--~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGI-GGPVATAV---PDGGRVYVASGDGNLYALDAKT--GKVL----WRFDL--PGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSC-SSEEETEE---EETTEEEEEETTSEEEEEETTT--SEEE----EEEEC--SSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCC-CCccceEE---EeCCEEEEEcCCCEEEEEECCC--CCEE----EEeec--cccc
Confidence 3789999999999999888652211 22222233 2567788889999999999976 5432 22221 1112
Q ss_pred cccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEee-cCCCCC--CeeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000836 1135 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDC--SISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1135 ~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti-~~hs~~--~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs 1211 (1262)
... . ...++.+++++.++.+..+|..+++ .+..+ ...... ..... .....+..++++..+|.|..+|.++
T Consensus 69 ~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 69 SGA---P--VVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GSG---E--EEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCSEEEEEETTT
T ss_pred cce---e--eecccccccccceeeeEecccCCcc-eeeeecccccccccccccc-CceEecCEEEEEeccCcEEEEecCC
Confidence 111 0 1247788888888899999999999 77774 322110 01111 1222478889999899999999999
Q ss_pred CCc
Q 000836 1212 PDM 1214 (1262)
Q Consensus 1212 ~~~ 1214 (1262)
++.
T Consensus 142 G~~ 144 (238)
T PF13360_consen 142 GKL 144 (238)
T ss_dssp TEE
T ss_pred CcE
Confidence 884
|
... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.067 Score=68.74 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=93.8
Q ss_pred eCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEee---cCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCC
Q 000836 1054 DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130 (1262)
Q Consensus 1054 s~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn---~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h 1130 (1262)
.....|+-.|+++|+.+..+..+.. ..|.+++-.+ +-+...-+.|-++..+..||.+. .+ .+++. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~-~~-~k~v~--~~~k~Y 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL-SG-NKLVD--SQSKQY 574 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCC-CC-Cceee--cccccc
Confidence 4567899999999999999998872 3365554321 12345567788889999999997 23 33441 111111
Q ss_pred --CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1131 --KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1131 --~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
.....+ ++ ....|+|++|+.+|.||+||--..+ .-..+++-.+. |..| ..+.+|+++++.+. ..+.++|
T Consensus 575 ~~~~~Fs~----~a-Tt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~lG~p-I~~i-Dvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 575 SSKNNFSC----FA-TTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPGLGDP-IIGI-DVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccCCCceE----EE-ecCCceEEEEeCCCcEEeecccchh-hhhcCCCCCCC-eeEE-EecCCCcEEEEeec-ceEEEEE
Confidence 111122 22 2458899999999999999943333 55556665554 9999 88899998887664 5667777
Q ss_pred C
Q 000836 1209 V 1209 (1262)
Q Consensus 1209 l 1209 (1262)
+
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.52 Score=55.83 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=79.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC----------CCeEEEEE
Q 000836 1046 FSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC----------NGNIRIWK 1110 (1262)
Q Consensus 1046 dg~~Lasgs~d-----g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~----------DG~IrIWD 1110 (1262)
++..+++.+.. ++|.|.|..+++.+.++.....+ - .+ ++ +|++.+.++.. ++.|.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P---~-~~-~s--pDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP---N-PV-VA--SDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC---c-ee-EC--CCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34455554443 89999999999999999876622 1 24 65 78877766655 78999999
Q ss_pred cCCCCCcceEEeeeeeccCCCC-c---ccccceeEEEcCCCCEEEEEe-C-CCeEEEEeCCCCceeeEeecCCC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKP-G---VRCSNVVVDWQQQSGYLYASG-E-VSSIMLWDLEKEQQMVNPIPSSS 1178 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~-~---V~sv~l~v~wsp~~~~Llsgg-~-Dg~IrIWDlrs~~~~v~ti~~hs 1178 (1262)
..+ .+ .+ +.+.-... . ...... +.++++|.++++.. + +..|-+.|+.+.+ .+.+++...
T Consensus 84 ~~t--~~--~~---~~i~~p~~p~~~~~~~~~~-~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp~ 148 (352)
T TIGR02658 84 PQT--HL--PI---ADIELPEGPRFLVGTYPWM-TSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVPD 148 (352)
T ss_pred Ccc--Cc--EE---eEEccCCCchhhccCccce-EEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCCC
Confidence 987 22 12 11111000 0 111111 78899999999885 3 7899999999999 999888754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.42 Score=55.09 Aligned_cols=185 Identities=16% Similarity=0.225 Sum_probs=107.6
Q ss_pred EEEcCCCCEEEEE-----eCCCcEEEEECC-CCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-------CCeEE
Q 000836 1041 ALLQPFSPIVVAA-----DENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-------NGNIR 1107 (1262)
Q Consensus 1041 l~fspdg~~Lasg-----s~dg~I~VWD~~-tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-------DG~Ir 1107 (1262)
-.|+++|++|++. +..|.|-|||.. +-+.+..|..+. -.-..+.+. +|+..|+++-. .|..+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G---IGPHel~l~--pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG---IGPHELLLM--PDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC---cChhhEEEc--CCCCEEEEEcCCCccCcccCcee
Confidence 3699999999984 346889999999 557788887766 445567786 78877776631 23333
Q ss_pred EEEcCCCCC--------cceEEeeeeec--cCCCCcccccceeEEEcCCCCEEEEEeCCC-------eEEEEeCCCCcee
Q 000836 1108 IWKDYDQKD--------KQKLVTAFSSI--QGHKPGVRCSNVVVDWQQQSGYLYASGEVS-------SIMLWDLEKEQQM 1170 (1262)
Q Consensus 1108 IWD~~~~~g--------~~~lvsa~~~l--~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg-------~IrIWDlrs~~~~ 1170 (1262)
+ ++.+.+. .-+++..+ .+ ..|..+++. +++..+|..++..-..| .|-+++- +. .
T Consensus 131 L-Nl~tM~psL~~ld~~sG~ll~q~-~Lp~~~~~lSiRH----La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~-~ 201 (305)
T PF07433_consen 131 L-NLDTMQPSLVYLDARSGALLEQV-ELPPDLHQLSIRH----LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GG-A 201 (305)
T ss_pred c-ChhhcCCceEEEecCCCceeeee-ecCccccccceee----EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CC-c
Confidence 2 1111111 11122111 23 335666777 77777655554442211 2333432 22 2
Q ss_pred eEeecCC-------CCCCeeEEEEEcCCCCEEE-EEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCE
Q 000836 1171 VNPIPSS-------SDCSISALTASQVHGGQLA-AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1242 (1262)
Q Consensus 1171 v~ti~~h-------s~~~VtsLa~~s~~g~lLa-tGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~ 1242 (1262)
+..+... .. .+-+| +++.++..++ |+-.-|.+.+||..++. ++... .. ..+..++-.++ + +
T Consensus 202 ~~~~~~p~~~~~~l~~-Y~gSI-a~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~-~l----~D~cGva~~~~--~-f 270 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNG-YIGSI-AADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSV-PL----PDACGVAPTDD--G-F 270 (305)
T ss_pred ceeccCChHHHHhhCC-ceEEE-EEeCCCCEEEEECCCCCEEEEEECCCCC-Eeecc-cc----CceeeeeecCC--c-e
Confidence 3333221 23 38889 6777877665 45556889999999888 33332 22 34677776666 4 6
Q ss_pred EEEecCCc
Q 000836 1243 VNGTPKCL 1250 (1262)
Q Consensus 1243 LaSgSdd~ 1250 (1262)
++|.+.+.
T Consensus 271 ~~ssG~G~ 278 (305)
T PF07433_consen 271 LVSSGQGQ 278 (305)
T ss_pred EEeCCCcc
Confidence 77776653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=71.04 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
...+.|.|++++|++..++.|+.||.|.+||..++..... + .. -..+.++|. ++|.++++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~---~~P~~iaWH--p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AE---FIPTLIAWH--PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ec---ccceEEEEc--CCCcEEEEEcCCceEEEEEee
Confidence 5567899999999999999999999999999987643322 2 22 356889996 899999999999999999997
Q ss_pred C
Q 000836 1113 D 1113 (1262)
Q Consensus 1113 ~ 1113 (1262)
.
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 5
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.06 Score=57.63 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCch
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1262)
Q Consensus 559 ~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1262)
|..|.-+..+|+-||..|+. +=......+...|+ |++|.||.-++++|.+|.... - +-++....
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~-------D~~~~VR~~al~~Ls~Li~~d-~---ik~k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLR-------DEDPLVRKTALLVLSHLILED-M---IKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHcC-c---eeehhhhh
Confidence 56799999999999988875 33456678888999 899999999999999998652 2 23334443
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHhhcccc
Q 000836 639 AIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 639 ~~l~~ll~D~sPeVRaa~v~als~~v~~ 666 (1262)
..++.++.|+.|+||+.|.++|..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999854
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.036 Score=68.51 Aligned_cols=105 Identities=16% Similarity=0.256 Sum_probs=75.7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC----------CeEEEEEcCCCCCc
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----------GNIRIWKDYDQKDK 1117 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D----------G~IrIWD~~~~~g~ 1117 (1262)
+++|+|...|+|.|+|+.++..-..|..|. +.|.++.|. ....|++.+.. +.+.|-|+++ |.
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht---~~VkgleW~---g~sslvSfsys~~n~~sg~vrN~l~vtdLrt--Gl 509 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHT---SLVKGLEWL---GNSSLVSFSYSHVNSASGGVRNDLVVTDLRT--GL 509 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccc---cceeeeeec---cceeEEEeeeccccccccceeeeEEEEEccc--cc
Confidence 378889999999999999999888999999 899999995 33445554432 2344556665 32
Q ss_pred ceEEeeeeeccCC-CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 000836 1118 QKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1167 (1262)
Q Consensus 1118 ~~lvsa~~~l~~h-~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~ 1167 (1262)
. ..+|.+++. ..+|+. +.-+..+.+++..=.+.-+.+||+++.
T Consensus 510 s---k~fR~l~~~despI~~----irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 S---KRFRGLQKPDESPIRA----IRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred c---cccccCCCCCcCccee----eeecccCceEEEEecccchHHHhhccc
Confidence 2 123544433 355665 666777889999988999999999654
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=64.12 Aligned_cols=235 Identities=18% Similarity=0.168 Sum_probs=159.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcccchhHHHhccchhHHHHHH--HHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHH
Q 000836 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1262)
Q Consensus 441 ~qLtafe~wL~~g~~~~~pp~~lPiVLqvLlS~~~rlral~--lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr 518 (1262)
+...++..-+-.-..-.+...-+|-|.+++.|+.++.|-+. .|..|.+..|-...|+ ..-+.|=|+++.+..|
T Consensus 22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~~~~ 96 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNPYIR 96 (526)
T ss_dssp HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCHHHH
Confidence 44555555444322222445678889999999999988877 5678999998866665 4467788999998999
Q ss_pred HHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcC
Q 000836 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1262)
Q Consensus 519 ~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1262)
..++=.+++|.. +. +. +.......+.|.+++ +..|.=|+.++..+.+.+|+- .+.++.+.+..+|.
T Consensus 97 ~lAL~~l~~i~~--~~----~~-~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~- 162 (526)
T PF01602_consen 97 GLALRTLSNIRT--PE----MA-EPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLS- 162 (526)
T ss_dssp HHHHHHHHHH-S--HH----HH-HHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTT-
T ss_pred HHHHhhhhhhcc--cc----hh-hHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhcc-
Confidence 998888888772 21 11 234555667777665 588999999999999887762 12227889999998
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCC
Q 000836 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD 678 (1262)
Q Consensus 599 ~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~ 678 (1262)
|++|.|+..++.++..+ ..++..-. .+-......|..++.+++|-++..++-.|..+.....
T Consensus 163 ------d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~---------- 224 (526)
T PF01602_consen 163 ------DKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP---------- 224 (526)
T ss_dssp ------HSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH----------
T ss_pred ------CCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh----------
Confidence 88999999999999999 33222211 2223334467777899999999999999998873211
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000836 679 EECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1262)
Q Consensus 679 ~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~ 719 (1262)
... . ...+...+..++...++.|.-|++-.+..+
T Consensus 225 -----~~~-~-~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 225 -----EDA-D-KNRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp -----HHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhh-h-HHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 000 0 034455555556666677777776666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=57.77 Aligned_cols=205 Identities=18% Similarity=0.234 Sum_probs=150.8
Q ss_pred HHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccc--cHHHHHHhhcCCCCcHHHHHHHHHHH
Q 000836 492 WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDG--GHAYFIRFLDSMEAYPEQRAMAAFVL 569 (1262)
Q Consensus 492 wAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~--~~~yf~~~L~~~~~~~e~ra~aafiL 569 (1262)
.-+...+..|..|..+.+|.+...+.+..|.--++.| ++|.-.++-|...+ .+..++...++++. ..|-.|+..|
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~--kvkcqA~lAL 275 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDRRARKILAQAEPKLVPALVDLMDDGSD--KVKCQAGLAL 275 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhHHHHHHHHhcccchHHHHHHHHhCCCh--HHHHHHHHHH
Confidence 5566667899999999999999999998888888766 45666666666544 78888998887764 6677888888
Q ss_pred HHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCC-
Q 000836 570 AVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP- 648 (1262)
Q Consensus 570 s~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~- 648 (1262)
..+..+-.. |....+.|.+..++++|+ +|.--+-.....|+-++--. +-..-.-++.++...|..+|.-+
T Consensus 276 rnlasdt~Y-q~eiv~ag~lP~lv~Llq-------s~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~d 346 (550)
T KOG4224|consen 276 RNLASDTEY-QREIVEAGSLPLLVELLQ-------SPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGD 346 (550)
T ss_pred hhhcccchh-hhHHHhcCCchHHHHHHh-------CcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCC
Confidence 887766554 666689999999999999 55533445667777655432 11122345666777788888765
Q ss_pred CHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 649 QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 649 sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
+.|+...++-.|-++.+.+ ++...+..|...+.++.+++.|++..||.|+.-.++.+...
T Consensus 347 nEeiqchAvstLrnLAass--------------e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 347 NEEIQCHAVSTLRNLAASS--------------EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred chhhhhhHHHHHHHHhhhh--------------hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 4459999999998887432 22234456777788889999999999999999988876543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.014 Score=67.46 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=86.9
Q ss_pred eeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCc
Q 000836 1125 SSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1262)
Q Consensus 1125 ~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGs 1203 (1262)
+.+..+...|++ ++|+|... .+..++-+.+|+|.|+++.. ++.++..+.. +.+++|+-.+.+++.+|-.+|.
T Consensus 187 q~lp~~g~~Ird----lafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~~~--~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 187 QILPGEGSFIRD----LAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAYNQ--IWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred hcccccchhhhh----hccCccccceeeeeccCceEEEEecccce-eeeheeccCC--ceeeeeccCCcceeEEeccCce
Confidence 345677788998 88888665 67777889999999999999 9999988844 8888566667789999999999
Q ss_pred EEEEECCCCCceeeeecCCCCCCCCeEEEEEecCC----CCCEEEEecCCceEEEeccc
Q 000836 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL----DPAKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1204 VrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~----~g~~LaSgSdd~I~~WDLry 1258 (1262)
|.|||+|..+.....+.. +-...+|..++.-+.. -|..|+.++.+ ..+|...+
T Consensus 260 VlvyD~R~~~~~~~e~~a-~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-l~f~ei~~ 316 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVA-NVTINPVHKIAPVQPNKIFTSGGLLVFALTV-LQFYEIVF 316 (463)
T ss_pred EEEEEccCCCchHhhhhh-hhccCcceeecccCccccccccceEEeeehh-hhhhhhhc
Confidence 999999988755444322 1123455555433220 13344444443 45666543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.2 Score=60.50 Aligned_cols=119 Identities=19% Similarity=0.028 Sum_probs=88.9
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcC
Q 000836 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1262)
Q Consensus 545 ~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1262)
...++..|.+.+ +..|+=++-.|+.+- ...+...++..|. +++|.||..++-++|..-.+
T Consensus 88 ~~~L~~~L~d~~--~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGP--EGLCAGIQAALGWLG-----------GRQAEPWLEPLLA-------ASEPPGRAIGLAALGAHRHD 147 (410)
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHhcCC-----------chHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccC
Confidence 567778887654 367887777777532 4466788899998 88999999888888873222
Q ss_pred chhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC
Q 000836 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 704 (1262)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 704 (1262)
....+..+|+|++|.||++++-+||.+-.. .....|...+.|.
T Consensus 148 ------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------------------------~a~~~L~~al~d~ 190 (410)
T TIGR02270 148 ------------PGPALEAALTHEDALVRAAALRALGELPRR-------------------------LSESTLRLYLRDS 190 (410)
T ss_pred ------------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------------------------cchHHHHHHHcCC
Confidence 234688999999999999999999987521 0112344567899
Q ss_pred ChhhHHHHHHHHHHHH
Q 000836 705 SPLVRAEVAVALARFA 720 (1262)
Q Consensus 705 sp~VR~E~~~~ls~~~ 720 (1262)
++.||..++..+..+-
T Consensus 191 ~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 191 DPEVRFAALEAGLLAG 206 (410)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999987653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.25 Score=59.46 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=111.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeC-----------CCeEE
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-----------NGNIR 1107 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~-----------DG~Ir 1107 (1262)
+-+.|||-|.+|++--. ..|.+|--++-..++.|. |. .|.-+.|| +..++|+|-|. ...++
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp----~Vq~idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HP----GVQFIDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CC----CceeeecC--CccceEEEecCCccccCcccCCCceEE
Confidence 46889999999999874 458899877666666664 33 57778997 78899998653 25789
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEE
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~ 1187 (1262)
|||+.+ |... .++..+.+ ...++. + +.|+.++.+++.-.. ..|.|++..+-. .+..-...-++ |... .
T Consensus 286 IWDI~t--G~lk--rsF~~~~~-~~~~WP--~-frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~g-Ir~F-s 353 (698)
T KOG2314|consen 286 IWDIAT--GLLK--RSFPVIKS-PYLKWP--I-FRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISG-IRDF-S 353 (698)
T ss_pred EEEccc--cchh--cceeccCC-Cccccc--e-EEeccCCceeEEecc-ceEEEEecCcee-eecccccCCcc-ccCc-c
Confidence 999988 4332 22333322 223333 2 899999888877655 458899877654 33322222233 7777 7
Q ss_pred EcCCCCEEEEEECC-----CcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000836 1188 SQVHGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNG 1245 (1262)
Q Consensus 1188 ~s~~g~lLatGs~D-----GsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaS 1245 (1262)
|+|.+++||--... ..+.+-.+.+.+ .++.... |.-.=..++|+.+ |.+|+.
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nl---fnVsDckLhWQk~--gdyLcv 410 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNL---FNVSDCKLHWQKS--GDYLCV 410 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccc---eeeeccEEEeccC--CcEEEE
Confidence 78887777643321 223444443333 1222111 1222345788888 777764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.032 Score=67.99 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=73.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCee-EEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeee
Q 000836 1141 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS-ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1141 v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vt-sLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
+.|+|.-..++.+..+|.|-+.-+. .+ .+.+++.+... ++ ++ +|.++|++++.|..||+|++.|+.++..+....
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~-v~~sL-~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGEN-VTASL-CWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cc-eeEeccCCCCc-cceee-eecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 8999999999999999999998887 44 68999877765 66 88 899999999999999999999999887444321
Q ss_pred cCCCCCCCCeEEEEEecC
Q 000836 1220 RPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1220 ~~~~gH~~~V~slafsp~ 1237 (1262)
+ .....|.++.|.+.
T Consensus 102 --~-s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 102 --F-SVETDISKGIWDRI 116 (665)
T ss_pred --c-ccccchheeecccc
Confidence 1 12467888888755
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0036 Score=75.64 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=105.9
Q ss_pred CeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEE----eCC
Q 000836 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYAS----GEV 1156 (1262)
Q Consensus 1082 ~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsg----g~D 1156 (1262)
.+.|+++....+..++++|..+|.|-+-..+..... .+....++....++ ++|++-+. .|++| -.|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~----lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTS----LAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccc----cccccccHHHHHhhhhhhccc
Confidence 456676653345578999999999999888762221 23456777777777 88988544 55555 136
Q ss_pred CeEEEEeCCCCce-ee--EeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEE
Q 000836 1157 SSIMLWDLEKEQQ-MV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1233 (1262)
Q Consensus 1157 g~IrIWDlrs~~~-~v--~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sla 1233 (1262)
..+.|||+.+... +. ..+.+.......++ ++..+.+++.+|.....++++|+|....-...+. +..+.++.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~-cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSV-CWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccccccccccCcccc-ccccCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccce
Confidence 6799999988720 11 12222112225677 6667888999999999999999994332222221 23567778
Q ss_pred EecCCCCCEEEEecCCceEEEe
Q 000836 1234 FQPGLDPAKVNGTPKCLPSFSD 1255 (1262)
Q Consensus 1234 fsp~~~g~~LaSgSdd~I~~WD 1255 (1262)
..|- .+.++++-+++.+.+||
T Consensus 203 Vdp~-~~nY~cs~~dg~iAiwD 223 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNSDGDIAIWD 223 (783)
T ss_pred ecCC-CCCceeccccCceeecc
Confidence 8884 37789998999999999
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.72 Score=52.28 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=150.9
Q ss_pred CCcccchhHHHhcc---chhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhh
Q 000836 459 PPEQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1262)
Q Consensus 459 pp~~lPiVLqvLlS---~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~ 535 (1262)
-+++|--++.+|.+ +.-+-+|+..+++. ..-|-+....-..|+.+-+.++|.+|.+..|..++..+..+-..+.+.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35677777777775 33478899999995 445678888888999999999999999999998888888765554433
Q ss_pred hhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHH
Q 000836 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1262)
Q Consensus 536 Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1262)
.-++...-..|-..+..+-.++.|.+ +.=+|..+.-.. ..+.. + .+.+..++.+|. ..+..+|.-++
T Consensus 89 --~~Ik~~i~~Vc~~~~s~~lns~~Q~a-gLrlL~nLtv~~-~~~~~-l-~~~i~~ll~LL~-------~G~~~~k~~vL 155 (254)
T PF04826_consen 89 --EQIKMYIPQVCEETVSSPLNSEVQLA-GLRLLTNLTVTN-DYHHM-L-ANYIPDLLSLLS-------SGSEKTKVQVL 155 (254)
T ss_pred --HHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHccCCCc-chhhh-H-HhhHHHHHHHHH-------cCChHHHHHHH
Confidence 23443333333333333333344432 222333332221 11333 2 235666788898 77888998899
Q ss_pred HHHHhhhcCchhhhHhhhccCchHHHhhhhcCC-CHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChH--HHHHHH-H
Q 000836 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD--EKIRAE-I 691 (1262)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~--~~~~~e-~ 691 (1262)
-+|.+|=.+.+.++.. +...+...++.|++.. ..++.-.++..+.++-......... -...++..+ -.+..| .
T Consensus 156 k~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~--~~~~~~~~~~L~~~~~e~~ 232 (254)
T PF04826_consen 156 KVLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV--FVQDDFSEDSLFSLFGESS 232 (254)
T ss_pred HHHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce--eccccCCchhHHHHHccHH
Confidence 9999998887666654 4445677888888765 7888888888888885322110000 001122221 122333 4
Q ss_pred HHHHHHHhhccCCChhhHHHH
Q 000836 692 SIIRSLLTVVSDGSPLVRAEV 712 (1262)
Q Consensus 692 ~~~~~ll~~~~D~sp~VR~E~ 712 (1262)
..+..|..+...+.++||..+
T Consensus 233 ~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 233 QLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHcCCCHHHhhhc
Confidence 478889999999999999865
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.81 Score=55.23 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=108.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--eeCC---CCCCCCeEEEEEee---cCCC---cEEEEEeCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNH---DFPDKGISKLCLVN---ELDV---SLLLVASCN 1103 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~--~~~h---~~~~~~ItsL~fsn---~~dg---~lLaTgS~D 1103 (1262)
.++|++++.+ +=.++++|.++|.+.|.|++....+.. +..+ ......|+++.|.- ..|+ -.+++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999997 555999999999999999976555544 2221 11135788998851 2233 478899999
Q ss_pred CeEEEEEcCC-CCCcceEEeeeeeccCCCCcccccceeEEEcCC--------------------CCEEEEEeCCCeEEEE
Q 000836 1104 GNIRIWKDYD-QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--------------------SGYLYASGEVSSIMLW 1162 (1262)
Q Consensus 1104 G~IrIWD~~~-~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~--------------------~~~Llsgg~Dg~IrIW 1162 (1262)
|.+.+|++.. ..+... +........+.+.+..+ ..++.+ -..+++...+..||++
T Consensus 165 G~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I---~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFS-VQFAGATTNHDSPILSI---IPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp SEEEEEEEEE-GGG-EE-EEEEEEE--SS----EE---EEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred CCEEEEEEecCCCCceE-EEEeeccccCCCceEEE---EEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999863 222222 11112222333333331 111100 1123444456779999
Q ss_pred eCCCCceeeEeecCCCCCCeeEEEEE----cCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCC
Q 000836 1163 DLEKEQQMVNPIPSSSDCSISALTAS----QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238 (1262)
Q Consensus 1163 Dlrs~~~~v~ti~~hs~~~VtsLa~~----s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~ 1238 (1262)
..-+.+ ..+......-. +..+... ...+..|++-..+|.|++|.+-.-+.+...--........+....+.++
T Consensus 241 ~~~~~k-~~~K~~~~~~~-~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~- 317 (395)
T PF08596_consen 241 KPPKSK-GAHKSFDDPFL-CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN- 317 (395)
T ss_dssp -TT----EEEEE-SS-EE-EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT-
T ss_pred eCCCCc-ccceeeccccc-cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC-
Confidence 998887 65555422111 2222121 2356788888999999999998766433222111111223445667788
Q ss_pred CCCEEEEecCC---ceEEEe
Q 000836 1239 DPAKVNGTPKC---LPSFSD 1255 (1262)
Q Consensus 1239 ~g~~LaSgSdd---~I~~WD 1255 (1262)
|..++-.+.. .+.+|.
T Consensus 318 -Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 318 -GDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp -S-EEEE-SSSEEEEEEEES
T ss_pred -CCEEEEeCcccEEEEEEEc
Confidence 7777666654 444554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.023 Score=56.28 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcC
Q 000836 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1262)
Q Consensus 545 ~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1262)
.+.++.+|..++ .+..-+.||.=|+.+++.+|.|+.++-+.|+-.++.++++ +++|+||--|++|+.+++..
T Consensus 45 lk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 45 LKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHh
Confidence 456777785554 3788999999999999999999999999999999999999 99999999999999998754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.7 Score=55.69 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=89.5
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCC-C---eEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEee
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK-G---ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA 1123 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~-~---ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa 1123 (1262)
..++.++.+|.+..+|..+|+.+..+....+.+. . ...+..++--.+..+..++.+|.+..+|..+ ++..
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t--G~~~---- 279 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS--GQIV---- 279 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC--CCEE----
Confidence 3566677789999999999987766543221110 0 1111111001245666777899999999976 4432
Q ss_pred eeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCc
Q 000836 1124 FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS 1203 (1262)
Q Consensus 1124 ~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGs 1203 (1262)
|+.-.+ .... +. -.++.+++++.++.+..+|..+++ .+-...........+. .. .+..++.++.||.
T Consensus 280 W~~~~~---~~~~----~~--~~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~sp-~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 280 WKREYG---SVND----FA--VDGGRIYLVDQNDRVYALDTRGGV-ELWSQSDLLHRLLTAP-VL--YNGYLVVGDSEGY 346 (394)
T ss_pred EeecCC---CccC----cE--EECCEEEEEcCCCeEEEEECCCCc-EEEcccccCCCcccCC-EE--ECCEEEEEeCCCE
Confidence 332111 1111 11 147889999999999999999988 5544332111112222 11 3567788999999
Q ss_pred EEEEECCCCCc
Q 000836 1204 VRLYDVRTPDM 1214 (1262)
Q Consensus 1204 VrIWDlrs~~~ 1214 (1262)
|.+.|..+++.
T Consensus 347 l~~ld~~tG~~ 357 (394)
T PRK11138 347 LHWINREDGRF 357 (394)
T ss_pred EEEEECCCCCE
Confidence 99999999873
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.16 Score=49.75 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=62.5
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeee
Q 000836 1141 VDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1141 v~wsp~~-~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
++|..+| ..|++|++|..||+|+- +. .+.++..... |+++... .+..|+.|..+|+|-+|+.... .|
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~--~e-~~~Ei~e~~~--v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~R-----lW 75 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKG--DE-IVAEITETDK--VTSLCSL--GGGRFAYALANGTVGVYDRSQR-----LW 75 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeC--Cc-EEEEEecccc--eEEEEEc--CCCEEEEEecCCEEEEEeCcce-----ee
Confidence 4555443 48999999999999974 34 7788877655 8888333 3478999999999999987432 23
Q ss_pred cCCCCCCCCeEEEEEecC-C-CCCEEEEecC
Q 000836 1220 RPHTQQVERVVGISFQPG-L-DPAKVNGTPK 1248 (1262)
Q Consensus 1220 ~~~~gH~~~V~slafsp~-~-~g~~LaSgSd 1248 (1262)
+.-. +..++++++..- . |...|++|=.
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEec
Confidence 2222 234666666433 1 3446777753
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.8 Score=48.41 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEE-EEEeCCCe
Q 000836 1035 EKGTKTALLQPFSPIVVAADEN--------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGN 1105 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~d--------g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lL-aTgS~DG~ 1105 (1262)
...++.+++.++|.+.++.... |.|..++.. ++....... - ...+.|+|+ ++++.| ++-+..+.
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~---~~pNGi~~s--~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L---GFPNGIAFS--PDGKTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E---SSEEEEEEE--TTSSEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c---ccccceEEC--Ccchheeecccccce
Confidence 3568899999999977775533 557777877 554433332 2 456789997 788755 56677889
Q ss_pred EEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEE
Q 000836 1106 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1185 (1262)
Q Consensus 1106 IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsL 1185 (1262)
|..|+.........-...+..+........+ +++..+|...++.-..+.|.++|.+ ++ .+..+...... ++++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG----~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~-~t~~ 230 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDG----LAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELPVPR-PTNC 230 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEE----EEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-SSSS-EEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCc----ceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCC-EEEE
Confidence 9999986522212111112222222222444 6777767655555678899999988 77 78888777444 8888
Q ss_pred EEEcCCCC-EEEE
Q 000836 1186 TASQVHGG-QLAA 1197 (1262)
Q Consensus 1186 a~~s~~g~-lLat 1197 (1262)
++--++.+ +++|
T Consensus 231 ~fgg~~~~~L~vT 243 (246)
T PF08450_consen 231 AFGGPDGKTLYVT 243 (246)
T ss_dssp EEESTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 33234544 4444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.11 Score=66.25 Aligned_cols=141 Identities=20% Similarity=0.206 Sum_probs=107.1
Q ss_pred CChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhh
Q 000836 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1262)
Q Consensus 501 gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq 580 (1262)
.+||-|+|...+...|+|-++=+-|-++-...|.-+.. ..+.|.+=|++++ ++.|.+|.=.|+.+=
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N--~~iR~~AlR~ls~l~------- 120 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPN--EEIRGFALRTLSLLR------- 120 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCC--HHHHHHHHHHHHhcC-------
Confidence 35999999999889999999988898888888743322 2345666566665 688988877776642
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHH
Q 000836 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1262)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~al 660 (1262)
.-.+-..+++-+.++++ |+.|.||+-+++|++++..-.. .+.-+.+....+-.|+.|.+|.|-++|+.+|
T Consensus 121 ~~el~~~~~~~ik~~l~-------d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 121 VKELLGNIIDPIKKLLT-------DPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred hHHHHHHHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 11244566677778888 9999999999999999996432 2444555666777889999999999999999
Q ss_pred hhccc
Q 000836 661 GTLLD 665 (1262)
Q Consensus 661 s~~v~ 665 (1262)
-.+-.
T Consensus 191 ~~i~~ 195 (757)
T COG5096 191 AEIDP 195 (757)
T ss_pred HHhch
Confidence 98863
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.063 Score=63.00 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=103.7
Q ss_pred CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCeE
Q 000836 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSI 1159 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~I 1159 (1262)
..|+.+.. .-.+++.+++.||.++.|.-....+ .+.+ ..+..|...+.+ ++-+.++-...+.++ |+.+
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~isG-vEfV---KhFraHL~~I~s----l~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRISG-VEFV---KHFRAHLGVILS----LAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCccc-eeeh---hhhHHHHHHHHh----hhccccceeEeeccCcccce
Confidence 56666654 4668999999999999998754122 2333 444556666665 555566666666677 9999
Q ss_pred EEEeCCCCceeeEeecCCCCC-CeeEEEEEcCCC----CEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEE
Q 000836 1160 MLWDLEKEQQMVNPIPSSSDC-SISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1234 (1262)
Q Consensus 1160 rIWDlrs~~~~v~ti~~hs~~-~VtsLa~~s~~g----~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slaf 1234 (1262)
|++|+..-. .+.-+....-. .+. ++...| .+-++...+|.+.|+|-+...+....++ .-|.++|..+.+
T Consensus 79 KvfDvEn~D-minmiKL~~lPg~a~---wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFD-MINMIKLVDLPGFAE---WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRY 152 (558)
T ss_pred eEEEeeccc-hhhhcccccCCCceE---EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEe
Confidence 999998765 44333322111 022 333334 2333445689999999987654333332 247899999999
Q ss_pred ecCCCCCEEEEec-CCceEEEecc
Q 000836 1235 QPGLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1235 sp~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
.+. +..++|.. .+.|..|...
T Consensus 153 ~qa--~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 153 NQA--GDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred ecc--ccceeeccccceeEeecCC
Confidence 999 77888877 4599999754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.096 Score=57.97 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCch-hhhHhhhccCchHH
Q 000836 562 RAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRADAPAI 640 (1262)
Q Consensus 562 ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~-~~~~~~~~~~~~~~ 640 (1262)
-.-||-+|+.+.......-.. +-..++..++..+. ++..-+|+.+.-||..++.... ..+ -....
T Consensus 70 ~~~A~~~l~~l~~~l~~~~~~-~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~ 135 (228)
T PF12348_consen 70 SKTACQLLSDLARQLGSHFEP-YADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPK------ILLEI 135 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--H------HHHHH
T ss_pred HHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHH------HHHHH
Confidence 446777777777665554222 34556778888888 7889999999999999999755 221 11446
Q ss_pred HhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000836 641 YVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 641 l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~ 720 (1262)
+...+++.+|.||.+++-.|..++..+.... .... ... .=..+...+..++.|+++.||+.+...+..+.
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~-------~~l~-~~~--~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDS-------SVLQ-KSA--FLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG---HH--HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchH-------hhhc-ccc--hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999996653100 0000 000 01345667788899999999999999988776
Q ss_pred Hhhhh
Q 000836 721 FGHKQ 725 (1262)
Q Consensus 721 ~~~~~ 725 (1262)
..|..
T Consensus 206 ~~~~~ 210 (228)
T PF12348_consen 206 SHFPE 210 (228)
T ss_dssp HHH-H
T ss_pred HHCCH
Confidence 55543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.036 Score=47.13 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhh
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL 621 (1262)
Q Consensus 559 ~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l 621 (1262)
|..|.-||++|+.+....+..... ....++..+..+|+ |+++.||..+|.+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~-------d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQ-------DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTT-------SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhcC
Confidence 467999999999977776664433 77889999999998 78889999999999975
|
... |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.073 Score=65.65 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=76.1
Q ss_pred HHHHhccChhhhhhhhccccHHHHHHhh----cCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCC
Q 000836 525 WTKILALDKSCQVDLVKDGGHAYFIRFL----DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSM 600 (1262)
Q Consensus 525 wa~il~~d~~~Q~dl~k~~~~~yf~~~L----~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~ 600 (1262)
+++|+...+ |.|.=.| ...+|++|| ++++. -.|--+|-+|+.+.+...+-- -....++...++..|.
T Consensus 66 la~fv~sl~--q~d~e~D-lV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~eid-d~vfn~l~e~l~~Rl~--- 136 (892)
T KOG2025|consen 66 LARFVESLP--QLDKEED-LVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDENAEID-DDVFNKLNEKLLIRLK--- 136 (892)
T ss_pred HHHHHHhhh--ccCchhh-HHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHh---
Confidence 456666554 3233222 344444444 45554 568889999999998544311 1234455566666777
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhh-cCCCHHHHHHHHHHHh
Q 000836 601 PNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1262)
Q Consensus 601 ~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sPeVRaa~v~als 661 (1262)
|-.|-||.=+++||.+|-++..+- +..+...+..++ +|||||||.+++.-++
T Consensus 137 ----Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 ----DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999999653221 223333455544 7999999999876654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=2 Score=52.36 Aligned_cols=139 Identities=8% Similarity=-0.016 Sum_probs=81.5
Q ss_pred CeEEEEEeecCCCcE-EEEEeC---CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eC-
Q 000836 1082 GISKLCLVNELDVSL-LLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GE- 1155 (1262)
Q Consensus 1082 ~ItsL~fsn~~dg~l-LaTgS~---DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~- 1155 (1262)
.+..-.|+ +||+. ++..+. +..|.++|+.+ ++.+.+ ......+.. ..|+|+|..++.. +.
T Consensus 189 ~~~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~~l------t~~~g~~~~----~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYT--GKKEKI------ASSQGMLVV----SDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEEC--CCCCcEEEEEEccCCCCEEEEEECCC--CcEEEE------ecCCCcEEe----eEECCCCCEEEEEEccC
Confidence 46678897 78873 554333 35678888865 544433 122222333 7899999887765 32
Q ss_pred -CCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCceeeeecCCCCCCCCeEE
Q 000836 1156 -VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1156 -Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~-DG--sVrIWDlrs~~~~v~~~~~~~gH~~~V~s 1231 (1262)
+..|.++|+..+. ...+..+... .... .|+++|+.|+-.+. .| .|.+.|+.+++. +.+ ...+. . .
T Consensus 255 g~~~Iy~~dl~~g~--~~~LT~~~~~-d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rl-t~~g~--~--~ 323 (419)
T PRK04043 255 GQPDIYLYDTNTKT--LTQITNYPGI-DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQV-VFHGK--N--N 323 (419)
T ss_pred CCcEEEEEECCCCc--EEEcccCCCc-cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCe--EeC-ccCCC--c--C
Confidence 4568888987776 3344333321 2233 68999987666653 33 577778876652 122 22221 1 2
Q ss_pred EEEecCCCCCEEEEec
Q 000836 1232 ISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgS 1247 (1262)
..|+|+ |+.|+-.+
T Consensus 324 ~~~SPD--G~~Ia~~~ 337 (419)
T PRK04043 324 SSVSTY--KNYIVYSS 337 (419)
T ss_pred ceECCC--CCEEEEEE
Confidence 489999 66665544
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.029 Score=55.65 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=64.5
Q ss_pred hhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 585 ~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
+-.++..|+.+|.. ..+|...+-+|.=||.|+.-++.++.+.-+.++-.++..|++++.|+||.+|+.++..++
T Consensus 41 ~~~llk~L~~lL~~------s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDK------SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcc------CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34677889999953 458999999999999999999999999989999999999999999999999999999887
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.56 Score=56.75 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHhccch--hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCC-chhHHHHHHHHHHHHhccChhhhhhhhcccc
Q 000836 468 QVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVDLVKDGG 544 (1262)
Q Consensus 468 qvLlS~~--~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~-~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~ 544 (1262)
..|..+. -..+|+.+|+.++.-|+--.......-++.++...|.++ ..+...+++-+++.+++.+..- ...++.+|
T Consensus 108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~ 186 (429)
T cd00256 108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADG 186 (429)
T ss_pred HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccC
Confidence 3444443 257788899999977662111111112566777777754 3688889999999999986544 45678889
Q ss_pred HHHHHHhhcCCCCcHHHHH-HHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcC
Q 000836 545 HAYFIRFLDSMEAYPEQRA-MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1262)
Q Consensus 545 ~~yf~~~L~~~~~~~e~ra-~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1262)
.+.+..+|..... .-|-+ -++||+=.+.-+-+ +...-.+.+++..+++.+++
T Consensus 187 v~~L~~~L~~~~~-~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 187 VPTLVKLLSNATL-GFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHHHHhhccc-cHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHh
Confidence 9999999975432 22333 34444433332222 33333345666666666663
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.49 Score=61.17 Aligned_cols=80 Identities=16% Similarity=0.323 Sum_probs=65.3
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEE
Q 000836 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108 (1262)
Q Consensus 1029 ~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrI 1108 (1262)
.|+...+++|++++|+.+|..++.|-.+|.|.+||..+++.++.+..|..++..|-.+.+. .++..++++..-|+ +
T Consensus 124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t--~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT--SQNSKLLTSDTGGS--F 199 (1206)
T ss_pred hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe--CCCcEEEEccCCCc--e
Confidence 5777788999999999999999999999999999999999998888777555556556664 45567888888887 6
Q ss_pred EEcC
Q 000836 1109 WKDY 1112 (1262)
Q Consensus 1109 WD~~ 1112 (1262)
|...
T Consensus 200 ~~lv 203 (1206)
T KOG2079|consen 200 WKLV 203 (1206)
T ss_pred EEEE
Confidence 6653
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.24 Score=63.20 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=111.1
Q ss_pred CchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHH
Q 000836 513 TTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 592 (1262)
Q Consensus 513 ~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~ 592 (1262)
...+-+.-+=.|+|.+...+. -+ ..+.--++...+.+ .|+|.++=+=|=..-+..|+-+.. +++..
T Consensus 32 n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd--~ElKrL~ylYl~~yak~~P~~~lL-----avNti 97 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRD--VELKRLLYLYLERYAKLKPELALL-----AVNTI 97 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhccCHHHHHH-----HHHHH
Confidence 344455556777877665543 11 23333444455455 499999988887766666743332 33455
Q ss_pred HHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCC
Q 000836 593 LKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCR 672 (1262)
Q Consensus 593 ~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~ 672 (1262)
.+=|+ |++|++|..++..|+.+=.+ .+-..+...+-.++.|++|.||+.|++|+..+-....
T Consensus 98 ~kDl~-------d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---- 159 (757)
T COG5096 98 QKDLQ-------DPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---- 159 (757)
T ss_pred Hhhcc-------CCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH----
Confidence 55566 99999999999999976543 3444455578899999999999999999999973321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 673 DGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 673 ~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
...-|.+....+-.++.|.+|.|-..+..++.-+...
T Consensus 160 -------------~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 -------------DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -------------hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1122344445556677899999999999888655444
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.055 Score=39.51 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=32.3
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEE
Q 000836 1067 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1067 g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD 1110 (1262)
++.+..+..|. ..|+++.|. +++.++++|+.||.+++|+
T Consensus 2 ~~~~~~~~~~~---~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHT---GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecC---CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 34566677777 789999996 5668999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.94 Score=44.53 Aligned_cols=103 Identities=10% Similarity=0.157 Sum_probs=67.0
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1038 TKTALLQP---FS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1038 V~sl~fsp---dg-~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
|++|++.. +| +.|++|++|..|+||+-+ ..+..+... ..|+++.-. .+..|+.|..+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~----~~v~~L~~~---~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET----DKVTSLCSL---GGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc----cceEEEEEc---CCCEEEEEecCCEEEEEeCcc
Confidence 56676654 22 489999999999999965 566666554 478888875 447899999999999998743
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCC-EEEEEeCCCeEE
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIM 1160 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~-~Llsgg~Dg~Ir 1160 (1262)
. -|+.-..+. +.++.. .+...+|. .|++|=.+|.|-
T Consensus 73 --R------lWRiKSK~~--~~~~~~-~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --R------LWRIKSKNQ--VTSMAF-YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --e------eeeeccCCC--eEEEEE-EcCCCCCceEEEEEecCCeEE
Confidence 1 144433332 444211 22222232 677776677653
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.4 Score=54.63 Aligned_cols=240 Identities=17% Similarity=0.154 Sum_probs=152.0
Q ss_pred CcccchhHHHhccchhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCC-CchhHHHHHHHHHHHHhccChhhhhh
Q 000836 460 PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT-TTPELRQILVFIWTKILALDKSCQVD 538 (1262)
Q Consensus 460 p~~lPiVLqvLlS~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs-~~~elr~~lvFIwa~il~~d~~~Q~d 538 (1262)
-|.+|-+..+|..+.++.-++.+|-+.- ...-++.+.-..+.+|.++++|-+ +..+...-++-+...+..+.+++| .
T Consensus 371 ~GlIPkLv~LL~d~~~~~val~iLy~LS-~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq-l 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNFREVALKILYNLS-MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ-L 448 (708)
T ss_pred CCCcHHHHHHhCCCchHHHHHHHHHHhc-cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH-H
Confidence 4778888888887877777777766554 355677777777899999987643 444444434444444444444444 5
Q ss_pred hhccccHHHHHHhhc-C--------------CCC------------------cHHHHHHHHHHHHHHhcCC-h--hhhHH
Q 000836 539 LVKDGGHAYFIRFLD-S--------------MEA------------------YPEQRAMAAFVLAVIVDGH-R--RGQEA 582 (1262)
Q Consensus 539 l~k~~~~~yf~~~L~-~--------------~~~------------------~~e~ra~aafiLs~l~~~~-~--~gq~~ 582 (1262)
++..+|.+.++.... . .+. ..+.--+.+=||+.+.+=. + .-...
T Consensus 449 m~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 449 MCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHH
Confidence 556666644443221 0 000 0011123333444433221 1 12333
Q ss_pred HHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCC--HHHHHHHHHHH
Q 000836 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ--PEVRASAVFSL 660 (1262)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s--PeVRaa~v~al 660 (1262)
+-+.+++..+..+|... ...+.+..=+++.+|.+..+..-|. .-.+.++...|..||+... -|.=--++|++
T Consensus 529 l~~~~llp~L~~~L~~g-----~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPG-----ASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred HHhCCHHHHHHHHhCCC-----CCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 44679999999999732 2235677778899999887654444 4445777778999998665 77888899999
Q ss_pred hhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Q 000836 661 GTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 661 s~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~ 721 (1262)
..|+-- ....+..-.+..+...|+.++.|..+.||+-+-.+|..+..
T Consensus 603 ~~ll~h--------------~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 603 YQLLFH--------------EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHcC--------------hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999922 11222333455677789999999999999999999887663
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.2 Score=65.30 Aligned_cols=153 Identities=15% Similarity=0.127 Sum_probs=114.5
Q ss_pred ChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhc---cccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChh
Q 000836 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVK---DGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1262)
Q Consensus 502 ifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k---~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~ 578 (1262)
+|+++-++|||+.--.|.-..-.++.|.- .|+ +.++ +..+..-++.|++++ |..|..||++++++.-++..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~E---Gc~-~~m~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAE---GCS-DVMIGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHc---ccH-HHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcH
Confidence 48888999998876555544444444433 344 3333 345566677777776 59999999999999999988
Q ss_pred hhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchH-HHhhhhcCCCHHHHHHHH
Q 000836 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA-IYVPLLSEPQPEVRASAV 657 (1262)
Q Consensus 579 gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~-~l~~ll~D~sPeVRaa~v 657 (1262)
.-.--....+...++..+.+ ..+|.|..-++-||=+|.++.+.-.-..+=+++.+ +|..|++.++|.||..+|
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDS------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcc------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 75555666677777777763 55799999999999999998877666555455555 888889999999999999
Q ss_pred HHHhhcccc
Q 000836 658 FSLGTLLDI 666 (1262)
Q Consensus 658 ~als~~v~~ 666 (1262)
-+|+.....
T Consensus 497 taIasvA~A 505 (1075)
T KOG2171|consen 497 TAIASVADA 505 (1075)
T ss_pred HHHHHHHHH
Confidence 999998743
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.88 Score=55.70 Aligned_cols=142 Identities=15% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..+..+.++|+|+.+++++ +|...|+.....+... + +.-.+..|+ . .+.+++-..+++|.|++....
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-~-------G~g~~~vw~--~-~n~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-F-------GSGLSFVWS--S-RNRYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-E-------EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-c-------CceeEEEEe--c-CccEEEEECCCeEEEEEcCcc-
Confidence 3478999999999999976 8888888854333322 2 223458897 3 456777777899999865431
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEE
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lL 1195 (1262)
... +.++.. ..+.. + | . |..|.+.+.+ .|.+||..+++ .+..+... . |..+ .|+++|.++
T Consensus 100 ~~~------k~i~~~-~~~~~----I-f-~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v~--~-vk~V-~Ws~~g~~v 159 (443)
T PF04053_consen 100 EVV------KSIKLP-FSVEK----I-F-G-GNLLGVKSSD-FICFYDWETGK-LIRRIDVS--A-VKYV-IWSDDGELV 159 (443)
T ss_dssp -TT-----------S-S-EEE----E-E---SSSEEEEETT-EEEEE-TTT---EEEEESS---E--EEE-EE-TTSSEE
T ss_pred ccc------eEEcCC-cccce----E-E-c-CcEEEEECCC-CEEEEEhhHcc-eeeEEecC--C-CcEE-EEECCCCEE
Confidence 111 111111 01222 1 1 1 5555555544 89999999999 99999854 2 7888 889999999
Q ss_pred EEEECCCcEEEEECCC
Q 000836 1196 AAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1196 atGs~DGsVrIWDlrs 1211 (1262)
+..+.+ ++.|++...
T Consensus 160 al~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEE-S--SEEEEEE-H
T ss_pred EEEeCC-eEEEEEecc
Confidence 998865 677877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.24 Score=62.05 Aligned_cols=166 Identities=22% Similarity=0.235 Sum_probs=111.4
Q ss_pred hHHHhccc--hhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccc
Q 000836 466 VLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDG 543 (1262)
Q Consensus 466 VLqvLlS~--~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~ 543 (1262)
+.++|-|- .-.++|+.-+--.|.-|--+ --+||-|+|...+...|+|.. ||+.- +++ ..-|.||-. -
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkL-VyvYL--lrY-AEeqpdLAL-L 108 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKL-VYVYL--LRY-AEEQPDLAL-L 108 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHH-HHHHH--HHH-hhcCCCcee-e
Confidence 45556564 34566666433333333332 246999999999999999885 55541 222 223334321 2
Q ss_pred cHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHH-HHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhh
Q 000836 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIH-VCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 544 ~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~-~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1262)
-+++|-+-|.+++ ++.|+||-=+||-|= +-+-..++- .+-+... |++|.||+-+++++-+|.
T Consensus 109 SIntfQk~L~DpN--~LiRasALRvlSsIR--------vp~IaPI~llAIk~~~~-------D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 109 SINTFQKALKDPN--QLIRASALRVLSSIR--------VPMIAPIMLLAIKKAVT-------DPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred eHHHHHhhhcCCc--HHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhc-------CCcHHHHHHHHHhhHHHh
Confidence 4789999998887 599999999988742 111112222 2222233 899999999999999999
Q ss_pred cCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
.-.++.+. ...+.+-.||+|.+|.|--+||+|+-..-
T Consensus 172 sLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 172 SLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred cCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 88766654 33457888999999999999999998765
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=62.43 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCcEEEEE-eCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcC-CCCEEEEEeCCCeEEEEeCCCCce
Q 000836 1092 LDVSLLLVA-SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQ 1169 (1262)
Q Consensus 1092 ~dg~lLaTg-S~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp-~~~~Llsgg~Dg~IrIWDlrs~~~ 1169 (1262)
.+.++|+.. .....|+-.|+.. .++|..|..-.. ..|..++-.-.+.| .....++|-++..+..||.|-...
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~----GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLER----GKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred cccceEeecCCCCCceEEEecCC----CcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCCCCC
Confidence 445555543 3456777777755 456766765322 11332110011111 234677887788899999987431
Q ss_pred eeEeecCC---CCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEe
Q 000836 1170 MVNPIPSS---SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGT 1246 (1262)
Q Consensus 1170 ~v~ti~~h---s~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSg 1246 (1262)
.+..-..+ .....+|+ +-..+ ..||+|+.+|.||+||. .+..... .+.+-+.+|.+|..+.+ |++++..
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~-aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT---~lp~lG~pI~~iDvt~D--GkwilaT 636 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCF-ATTED-GYIAVGSNKGDIRLYDR-LGKRAKT---ALPGLGDPIIGIDVTAD--GKWILAT 636 (794)
T ss_pred ceeeccccccccCCCceEE-EecCC-ceEEEEeCCCcEEeecc-cchhhhh---cCCCCCCCeeEEEecCC--CcEEEEe
Confidence 22221221 11125666 43434 48899999999999994 3332221 23355699999999999 8898888
Q ss_pred cCCceEEEecc
Q 000836 1247 PKCLPSFSDLI 1257 (1262)
Q Consensus 1247 Sdd~I~~WDLr 1257 (1262)
++..+.+.+..
T Consensus 637 c~tyLlLi~t~ 647 (794)
T PF08553_consen 637 CKTYLLLIDTL 647 (794)
T ss_pred ecceEEEEEEe
Confidence 87766666653
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.52 Score=59.17 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=61.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.+++++|||..-.|++|-.-|.+.||...+.+.-.....|. ..|+.+.|+ ++|+.++|+..-|.|.+|+..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~---a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP---APIQGLDWS--HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC---CCceeEEec--CCCCeEEEcCCCceeEEEEee
Confidence 35679999999899999999999999998766555555676 899999998 899999999999999999876
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.17 Score=63.01 Aligned_cols=208 Identities=19% Similarity=0.231 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhc
Q 000836 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553 (1262)
Q Consensus 474 ~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~ 553 (1262)
.+-+-++.-+++++|-.+ ...++.|.++||+.++..-.| +..|..|..+=..-+..-+++..+..|..=+.
T Consensus 309 ~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr~iR---~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~ 379 (690)
T KOG1243|consen 309 SDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDRQIR---LLLLQYIEKYIDHLTKQILNDQIFPHVALGFL 379 (690)
T ss_pred hhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcchHHH---HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcc
Confidence 457788888889998888 668999999999998875544 34444554442233334577888888887666
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhh
Q 000836 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGR 633 (1262)
Q Consensus 554 ~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~ 633 (1262)
+.+. -+|.-..=+++.|.-- .++. .++.+++..+..+-. |..+.+|+|.-+|||++-......+ .
T Consensus 380 DTn~--~Lre~Tlksm~~La~k--L~~~-~Ln~Ellr~~ar~q~-------d~~~~irtntticlgki~~~l~~~~---R 444 (690)
T KOG1243|consen 380 DTNA--TLREQTLKSMAVLAPK--LSKR-NLNGELLRYLARLQP-------DEHGGIRTNTTICLGKIAPHLAASV---R 444 (690)
T ss_pred cCCH--HHHHHHHHHHHHHHhh--hchh-hhcHHHHHHHHhhCc-------cccCcccccceeeecccccccchhh---h
Confidence 5553 3444332222222211 1122 245555544444333 7789999999999999877654444 1
Q ss_pred ccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHH
Q 000836 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 713 (1262)
Q Consensus 634 ~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~ 713 (1262)
.......+...+.|+-+--|.|.+++|.....-+ ...+ +-..|+..+..+.-|....||.-+-
T Consensus 445 ~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--------------~~~~---va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 445 KRVLASAFTRALKDPFVPARKAGVLALAATQEYF--------------DQSE---VANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccccchhhhhhhcCCCCCchhhhhHHHhhccccc--------------chhh---hhhhccccccccccCcccchhhHHH
Confidence 2222346667899999999999999998765322 1111 1133445555667799999999988
Q ss_pred HHHHHHHHh
Q 000836 714 VALARFAFG 722 (1262)
Q Consensus 714 ~~ls~~~~~ 722 (1262)
.++..+...
T Consensus 508 ~~i~~fl~k 516 (690)
T KOG1243|consen 508 KAIRQFLEK 516 (690)
T ss_pred HHHHHHHhh
Confidence 887655433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.2 Score=53.84 Aligned_cols=146 Identities=15% Similarity=0.140 Sum_probs=88.0
Q ss_pred CCcE-EEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCC-------CEEEEEeCCCeEEEEeC
Q 000836 1093 DVSL-LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-------GYLYASGEVSSIMLWDL 1164 (1262)
Q Consensus 1093 dg~l-LaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~-------~~Llsgg~Dg~IrIWDl 1164 (1262)
+.++ |.++..-..++-.|+.. -++|..|..-.. |.- +.+.|+. ..-++|=++..|.-||.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~----GKIVeEWk~~~d----i~m----v~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER----GKIVEEWKFEDD----INM----VDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc----ceeeeEeeccCC----cce----eeccCCcchhcccccccEEeecCCceEEecc
Confidence 3444 45555556666666654 356767765443 221 3333332 23456667778899999
Q ss_pred CCCce-eeEeecCCCCC---CeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCC
Q 000836 1165 EKEQQ-MVNPIPSSSDC---SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1240 (1262)
Q Consensus 1165 rs~~~-~v~ti~~hs~~---~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g 1240 (1262)
|-... .+..-..|.-. ...|. .-. ...++++|+.+|.||+||. .+..-.. .+.+-..+|..|..+.+ |
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~-aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKT---AlPgLG~~I~hVdvtad--G 483 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCF-ATT-ESGYIVVGSLKGDIRLYDR-IGRRAKT---ALPGLGDAIKHVDVTAD--G 483 (644)
T ss_pred cccCcceeeeeecccccccccccee-eec-CCceEEEeecCCcEEeehh-hhhhhhh---cccccCCceeeEEeecc--C
Confidence 86541 12222222111 13444 222 3448899999999999998 3332222 34455689999999999 9
Q ss_pred CEEEEecCCceEEEeccc
Q 000836 1241 AKVNGTPKCLPSFSDLIY 1258 (1262)
Q Consensus 1241 ~~LaSgSdd~I~~WDLry 1258 (1262)
.+++..++..+.+-|+++
T Consensus 484 Kwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 484 KWILATCKTYLLLIDTLI 501 (644)
T ss_pred cEEEEecccEEEEEEEec
Confidence 999988888666666554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.16 Score=59.73 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=108.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCC---cEEE-EEeCCCeEEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAADE-NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV---SLLL-VASCNGNIRIWK 1110 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~-dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg---~lLa-TgS~DG~IrIWD 1110 (1262)
..+.+++.+.++-++.+.+. |..++++|+++-..+..++....++ . +.|.+ ..| ..++ +...+|.|.|+|
T Consensus 54 ~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg-~---a~wv~-skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 54 GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG-F---AEWVT-SKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC-c---eEEec-CCCCeeeeEEeecccCCCcEEEC
Confidence 34556777888888888776 9999999999766555554444332 2 34432 222 2333 344679999999
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCC------Cc--------eeeEeecC
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK------EQ--------QMVNPIPS 1176 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs------~~--------~~v~ti~~ 1176 (1262)
-.. +.++.. ..-.-|..+|.. +.+.|.+...++....|.|.-|.... .. .-+..++-
T Consensus 129 ~~~--d~~q~~---~fkklH~sPV~~----i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 129 GFG--DFCQDG---YFKKLHFSPVKK----IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred CcC--CcCccc---eecccccCceEE----EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 876 222211 223457788887 88889888888877889999998873 11 00111111
Q ss_pred CCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 000836 1177 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1177 hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
... ..+++ .++++|..+.+-..|..||+++.++++
T Consensus 200 ~Kt-~pts~-Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 200 AKT-EPTSF-EFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccc-Cccce-EEccccCcccccCcccEEEEEEeccch
Confidence 222 26777 789999999999999999999998875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.6 Score=49.20 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=54.5
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEeCC----------C-cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEE
Q 000836 1029 CWDTRFEKGTKTALLQPFSPIVVAADEN----------E-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1097 (1262)
Q Consensus 1029 ~w~~~~~~~V~sl~fspdg~~Lasgs~d----------g-~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lL 1097 (1262)
.|+.+....=..++..|+|..+|...++ . .|+||+.. |+.+.++.-.. +.|.++.|. +...|
T Consensus 22 ~W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~wt---~~e~L 94 (410)
T PF04841_consen 22 SWSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGWT---DDEEL 94 (410)
T ss_pred CCCccccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEEC---CCCeE
Confidence 3555433322445667877777776533 1 59999987 77787766554 689999996 45667
Q ss_pred EEEeCCCeEEEEEcC
Q 000836 1098 LVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1098 aTgS~DG~IrIWD~~ 1112 (1262)
++-..||.+++||..
T Consensus 95 vvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 95 VVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEcCCEEEEEeCC
Confidence 777899999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=1 Score=55.23 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=77.8
Q ss_pred CeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEE
Q 000836 1082 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1161 (1262)
Q Consensus 1082 ~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrI 1161 (1262)
....+.++ |+|+++++ +.||.-.||.... .+.+ ..+.+....|.. .+..++-...+.|+|
T Consensus 34 ~p~~ls~n--pngr~v~V-~g~geY~iyt~~~--~r~k--------------~~G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 34 YPQSLSHN--PNGRFVLV-CGDGEYEIYTALA--WRNK--------------AFGSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp --SEEEE---TTSSEEEE-EETTEEEEEETTT--TEEE--------------EEEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCeeEEEC--CCCCEEEE-EcCCEEEEEEccC--Cccc--------------ccCceeEEEEec-CccEEEEECCCeEEE
Confidence 45678886 78888888 5678877877432 1110 111122378888 556666666888999
Q ss_pred EeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCC
Q 000836 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1241 (1262)
Q Consensus 1162 WDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~ 1241 (1262)
+.--.+. .+..+..... +..| +. |.+|...+.+ .|.+||..+++ .++.+ .. .+|..|.|+++ +.
T Consensus 94 ~kn~~~~-~~k~i~~~~~--~~~I-f~---G~LL~~~~~~-~i~~yDw~~~~-~i~~i-~v----~~vk~V~Ws~~--g~ 157 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLPFS--VEKI-FG---GNLLGVKSSD-FICFYDWETGK-LIRRI-DV----SAVKYVIWSDD--GE 157 (443)
T ss_dssp EETTEE--TT-----SS---EEEE-E----SSSEEEEETT-EEEEE-TTT---EEEEE-SS-----E-EEEEE-TT--SS
T ss_pred EEcCccc-cceEEcCCcc--cceE-Ec---CcEEEEECCC-CEEEEEhhHcc-eeeEE-ec----CCCcEEEEECC--CC
Confidence 6333333 3445544322 6667 33 7877777654 89999999887 56655 22 24899999999 89
Q ss_pred EEEEecCCceEEEec
Q 000836 1242 KVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1242 ~LaSgSdd~I~~WDL 1256 (1262)
+++-.+++.+.+.+.
T Consensus 158 ~val~t~~~i~il~~ 172 (443)
T PF04053_consen 158 LVALVTKDSIYILKY 172 (443)
T ss_dssp EEEEE-S-SEEEEEE
T ss_pred EEEEEeCCeEEEEEe
Confidence 999999887777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=62.19 Aligned_cols=122 Identities=14% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..|.--++...+++++.|+..|.+.+|+-..++... +++.. +..++++... ..+..+++.|+..|.|.|+-+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~--~~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~- 108 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEG--ATGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKE- 108 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccC--ccceEEEEEe-cchhHhhhhhcCCceEEeehhhcc-
Confidence 345555667789999999999999999988765432 33321 1344444443 267778889999999999998762
Q ss_pred CcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1166 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs 1166 (1262)
.....+..-..-+.|...|++ ++|++++..+++|...|+|..--+.+
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTa----l~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTA----LEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEE----EEecccccEEeecCCCceEEEEEech
Confidence 222222111112336777888 99999999999998889888776655
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.035 Score=41.69 Aligned_cols=26 Identities=42% Similarity=0.731 Sum_probs=22.9
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 639 AIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 639 ~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
..++.+++|++|+||.+++.+|+.+.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999999999986
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.5 Score=59.26 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=92.7
Q ss_pred hhhhcCCCchhHH-HHHHHHHHHHhccChhhhhhhhccccHHHHHHhh---cCCCCcHHHHHHHHHHHHHHhcCChhhhH
Q 000836 506 VLKLLQTTTPELR-QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL---DSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1262)
Q Consensus 506 vlkLLqs~~~elr-~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L---~~~~~~~e~ra~aafiLs~l~~~~~~gq~ 581 (1262)
+..||.|..+-+| .-+=+|++.|++.+- . -.||-.+. .+.+ .|.|.+-=+=|=..-+.-+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~d-v---------S~~Fp~VVKNVaskn--~EVKkLVyvYLlrYAEeqpd--- 104 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKD-V---------SLLFPAVVKNVASKN--IEVKKLVYVYLLRYAEEQPD--- 104 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCc-H---------HHHHHHHHHHhhccC--HHHHHHHHHHHHHHhhcCCC---
Confidence 4578887654443 456899999988753 2 12333333 2333 25555333222221111111
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHh
Q 000836 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1262)
Q Consensus 582 ~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als 661 (1262)
.++ =-++..-.-|. ||+|++|+|++..|+-+ |.-.|-.-+...+-++..|++|.||+.|..|+-
T Consensus 105 LAL--LSIntfQk~L~-------DpN~LiRasALRvlSsI-------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIp 168 (968)
T KOG1060|consen 105 LAL--LSINTFQKALK-------DPNQLIRASALRVLSSI-------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIP 168 (968)
T ss_pred cee--eeHHHHHhhhc-------CCcHHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhH
Confidence 110 01244445577 99999999999999832 222333333345557788999999999999999
Q ss_pred hccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 000836 662 TLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716 (1262)
Q Consensus 662 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~l 716 (1262)
.+-.-.. ++. . +-..++. .++.|-+|.|---++.++
T Consensus 169 KLYsLd~-------------e~k--~-qL~e~I~---~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 169 KLYSLDP-------------EQK--D-QLEEVIK---KLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHhcCCh-------------hhH--H-HHHHHHH---HHhcCCCCcchhHHHHHH
Confidence 9874321 111 1 1122333 355799999988777765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.4 Score=53.14 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=88.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeee
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~ 1126 (1262)
+..+++++.+|.+..+|..+|+.+.+..... ...+.. ++..+..++.||.+..+|..+ ++.. |+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----~~~~~~----~~~~vy~~~~~g~l~ald~~t--G~~~----W~~ 320 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-----VNDFAV----DGGRIYLVDQNDRVYALDTRG--GVEL----WSQ 320 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----ccCcEE----ECCEEEEEcCCCeEEEEECCC--CcEE----Ecc
Confidence 5567777789999999999998876553222 112223 456777788899999999976 4331 322
Q ss_pred ccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeE-EEEEcCCCCEEEEEECCCcEE
Q 000836 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA-LTASQVHGGQLAAGFVDGSVR 1205 (1262)
Q Consensus 1127 l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~Vts-La~~s~~g~lLatGs~DGsVr 1205 (1262)
-.. ......... + .++.+++++.+|.+.+.|..+++ .+......... +.+ . .. .+..|+.++.||.|.
T Consensus 321 ~~~-~~~~~~sp~-v----~~g~l~v~~~~G~l~~ld~~tG~-~~~~~~~~~~~-~~s~P-~~--~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 321 SDL-LHRLLTAPV-L----YNGYLVVGDSEGYLHWINREDGR-FVAQQKVDSSG-FLSEP-VV--ADDKLLIQARDGTVY 389 (394)
T ss_pred ccc-CCCcccCCE-E----ECCEEEEEeCCCEEEEEECCCCC-EEEEEEcCCCc-ceeCC-EE--ECCEEEEEeCCceEE
Confidence 110 011111111 1 26889999999999999999999 77777654332 221 1 11 345788889999988
Q ss_pred EEEC
Q 000836 1206 LYDV 1209 (1262)
Q Consensus 1206 IWDl 1209 (1262)
.++.
T Consensus 390 ~~~~ 393 (394)
T PRK11138 390 AITR 393 (394)
T ss_pred EEeC
Confidence 8764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.11 Score=37.88 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=31.1
Q ss_pred eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1170 ~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
++..+..|... |.++ .+.+.+..+++|+.||.+++||
T Consensus 4 ~~~~~~~~~~~-i~~~-~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGP-VTSV-AFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCc-eeEE-EECCCCCEEEEecCCCeEEEcC
Confidence 56667777765 9999 7778889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.35 Score=53.46 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHhhch-HHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCch-hhhHh---hh
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGL-IHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTI---GR 633 (1262)
Q Consensus 559 ~e~ra~aafiLs~l~~~~~~gq~~~~~~~~-~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~-~~~~~---~~ 633 (1262)
.-.|+-|.-+|-.++...+. ...+ ...+...++ +.+|.+|.-++.+|..++...+ ..... ..
T Consensus 108 ~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~-------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCSY------SPKILLEILSQGLK-------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 45677788888888876651 2233 566667777 8899999999999999998876 11111 11
Q ss_pred ccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 634 ~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
-..+...+..++.|+.|+||+++--++..|.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 2345668889999999999999988888886
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.88 Score=58.42 Aligned_cols=178 Identities=20% Similarity=0.180 Sum_probs=125.3
Q ss_pred ccchhHHHHHH-HHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHH
Q 000836 471 LSQCHRFRALV-LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFI 549 (1262)
Q Consensus 471 lS~~~rlral~-lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~ 549 (1262)
..|.+-+|+.. +|.++..- +....-....||+++++++|++...|+.-.++-.+-| +++++.++......+....+.
T Consensus 260 ~kQeqLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkk-LSi~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 260 RKQEQLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKK-LSIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHcCCHHHHH
Confidence 34666555544 67776643 3444455799999999999999888886655555534 567778888899999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhh
Q 000836 550 RFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQ 629 (1262)
Q Consensus 550 ~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~ 629 (1262)
++|.+.+. +.+..+.=+|--|..+... +..-.+.|++..++.+|. + +..|.-++-.|.++-. .+++|
T Consensus 338 kLl~s~~~--~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~-------d--~~~~~val~iLy~LS~-dd~~r 404 (708)
T PF05804_consen 338 KLLPSENE--DLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLK-------D--PNFREVALKILYNLSM-DDEAR 404 (708)
T ss_pred HHhcCCCH--HHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhC-------C--CchHHHHHHHHHHhcc-CHhhH
Confidence 99987663 6677777777666655444 666689999999999998 3 3455555555666555 45677
Q ss_pred Hh-hhccCchHHHhh-hhcCCCHHHHHHHHHHHhhcc
Q 000836 630 TI-GRRADAPAIYVP-LLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 630 ~~-~~~~~~~~~l~~-ll~D~sPeVRaa~v~als~~v 664 (1262)
.+ +..+.+ ..+.. ++.-+.++|..+++.++-++.
T Consensus 405 ~~f~~TdcI-p~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 405 SMFAYTDCI-PQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHhhcchH-HHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 76 444444 45555 456678888888877777765
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.48 Score=52.86 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhh
Q 000836 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1262)
Q Consensus 473 ~~~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L 552 (1262)
+..|+|||.-|-...+.+. .-++.|-.-+-...+|.=++|.++.... ..-.+..+.+|
T Consensus 19 l~~r~rALf~Lr~l~~~~~-----------i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA-----------IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCChHH-----------HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHh
Confidence 4579999998777775444 3455666655566777778888843211 23456677777
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhh----
Q 000836 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA---- 628 (1262)
Q Consensus 553 ~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~---- 628 (1262)
.+.+--|-.|-=|+++|+.+- ...+.+++-++.+ ||..+||--+-+++.++=....-+
T Consensus 77 ~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~-------dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIK-------DPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred cccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhc-------CCccccchHHHHHHHHHHHhhccccccc
Confidence 766655677888999998866 2344555555555 677777776777776663211000
Q ss_pred ------------------------------------hH-hhhcc----CchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 629 ------------------------------------QT-IGRRA----DAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 629 ------------------------------------~~-~~~~~----~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
+. +.++. .+...|..-+.|+|++.|-++.|-||.+-
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQ 215 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Confidence 00 11211 12235666777889999999999998876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.3 Score=56.15 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=90.0
Q ss_pred CEEEEEeCCC-----cEEEEECCCC------cEE---EEeeCCCC-CCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1048 PIVVAADENE-----RIKIWNYEED------TLL---NSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1048 ~~Lasgs~dg-----~I~VWD~~tg------~~l---~~~~~h~~-~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
.+|++-+.|+ .|+|||++.. +++ +.+...++ ...++++++.+ .+-..+|+|..||.|..+.-.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs--~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS--EDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE--ccccEEEEEecCcEEEEEcCc
Confidence 5677755444 5999998742 233 22221221 13678888887 567899999999999988754
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeEe-ecCCCCCCeeEEEEEcC
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQV 1190 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~-Llsgg~Dg~IrIWDlrs~~~~v~t-i~~hs~~~VtsLa~~s~ 1190 (1262)
-...+.. ..........+|++ +.+..++.. ++++. -..|.+|.+.... +... +..+..+ +.|. .+++
T Consensus 156 i~RDrgs---r~~~~~~~~~pITg----L~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~-lnCs-s~~~ 224 (933)
T KOG2114|consen 156 ILRDRGS---RQDYSHRGKEPITG----LALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGIS-LNCS-SFSD 224 (933)
T ss_pred chhcccc---ceeeeccCCCCcee----eEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCcc-ceee-ecCC
Confidence 3111111 11222334567888 666666666 44443 4458889887444 4444 5555444 8887 4443
Q ss_pred CCCEEEEEECCCcEEEEECCCCC
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1191 ~g~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
....|++++ +..|.+||....+
T Consensus 225 ~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 225 GTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCccEEEec-CceEEEEcCCCcc
Confidence 333344443 3568999987544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.17 Score=61.96 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~It-sL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
+..+.-+.|+|.-.++|++..+|.|.+.... .+++.+++-++ ..++ +++|. +||++|++|..||+|++.|...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~---~~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG---ENVTASLCWR--PDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC---Cccceeeeec--CCCCEEEEEecCCeEEEEEccC
Confidence 3568889999999999999999999999998 88899998666 5566 99995 8999999999999999999976
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.25 Score=61.20 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=81.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecC-CCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--eee
Q 000836 1141 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVC 1217 (1262)
Q Consensus 1141 v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~-hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~--~v~ 1217 (1262)
.++...+.+++.|++.|.+.+++-..++ .+.++. .... ++++.+.+.+..++|+|+..|.|.|+-+..... ...
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchh--hhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 4556678899999999999999977766 333333 1222 566557888889999999999999998766331 121
Q ss_pred eecCCCCCCCCeEEEEEecCCCCCEEEEec-CCceEEEeccc
Q 000836 1218 STRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDLIY 1258 (1262)
Q Consensus 1218 ~~~~~~gH~~~V~slafsp~~~g~~LaSgS-dd~I~~WDLry 1258 (1262)
.-.....|...|++++|+++ ++.+.+|. .|.+..-.|-+
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~--~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKN--GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEeccc--ccEEeecCCCceEEEEEech
Confidence 22234457899999999999 99999998 45666655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.2 Score=62.56 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCEEEEEe----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCC
Q 000836 1038 TKTALLQPFSPIVVAAD----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1113 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasgs----~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~ 1113 (1262)
.+-..|||..+++++++ ..|.|.||- ++|++-....- .-.+++++|. +..-.|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~----P~hatSLCWH--pe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY----PVHATSLCWH--PEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc----ceehhhhccC--hHHHHHhhccccceeEEEecCC
Confidence 34567999999999876 457888874 33543322211 1356789996 6767888898999999999876
Q ss_pred CCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000836 1114 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1165 (1262)
Q Consensus 1114 ~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlr 1165 (1262)
.+.. .....|...|.. +.|+++|+.++++..-|.|.+|...
T Consensus 91 --~e~h-----tv~~th~a~i~~----l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 --TETH-----TVVETHPAPIQG----LDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --ceee-----eeccCCCCCcee----EEecCCCCeEEEcCCCceeEEEEee
Confidence 2221 123457777777 9999999999999999999999665
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.3 Score=52.07 Aligned_cols=166 Identities=23% Similarity=0.266 Sum_probs=96.7
Q ss_pred CcccchhHHHhccchh--HHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhh
Q 000836 460 PEQLPIVLQVLLSQCH--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 460 p~~lPiVLqvLlS~~~--rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~ 537 (1262)
+...+.++++|-++.. |..|...|+.+= ..-.+|...++|.+....+|...++.++++-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 4577788888888644 555555533322 12346677788888777888888885543211
Q ss_pred hhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCC-----------------------hh--hhHHH-------Hh
Q 000836 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH-----------------------RR--GQEAC-------IE 585 (1262)
Q Consensus 538 dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~-----------------------~~--gq~~~-------~~ 585 (1262)
+..+..++..|.. +...-.|.-|++.|+.+-+.. +. -+... -.
T Consensus 104 ----~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 104 ----PEAVPPLVELLEN-DENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred ----hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 2233444454543 111345556666555533221 00 00000 02
Q ss_pred hchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 586 ~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
......+.+++. ++...||.++..+||++.... ..+...+...+.|++..||.+++.+||..-
T Consensus 179 ~~~~~~l~~~l~-------~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 179 PEAIPLLIELLE-------DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred hhhhHHHHHHHh-------CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 233455556666 666778888888888777764 233446778888888888888888888764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.66 Score=56.00 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=95.8
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCc-----EEEEEeCCCeEEEEEcCCCCCcce
Q 000836 1046 FSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-----LLLVASCNGNIRIWKDYDQKDKQK 1119 (1262)
Q Consensus 1046 dg~~-Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~-----lLaTgS~DG~IrIWD~~~~~g~~~ 1119 (1262)
+.++ +.++.....++-.|++.|+.+..+..+. . |+-+.+.|...+. .-+.|-+|..|.-||.+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~---d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv-~~~~k 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED---D-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV-QGKNK 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC---C-cceeeccCCcchhcccccccEEeecCCceEEecccc-cCcce
Confidence 3443 4446666788899999999999998887 3 6666664322222 235577788999999986 34433
Q ss_pred EEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEE
Q 000836 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1262)
Q Consensus 1120 lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs 1199 (1262)
+. |. ++|.-. +...+.+.-...+++|++||.+|.||+||--..+ .-..+++-... |+.| ....+|..+++.+
T Consensus 419 l~--~~--q~kqy~-~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~-AKTAlPgLG~~-I~hV-dvtadGKwil~Tc 490 (644)
T KOG2395|consen 419 LA--VV--QSKQYS-TKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRR-AKTALPGLGDA-IKHV-DVTADGKWILATC 490 (644)
T ss_pred ee--ee--eccccc-cccccceeeecCCceEEEeecCCcEEeehhhhhh-hhhcccccCCc-eeeE-EeeccCcEEEEec
Confidence 22 21 222111 1101111112357899999999999999973333 45567776665 9999 6677888777655
Q ss_pred CCCcEEEEECC
Q 000836 1200 VDGSVRLYDVR 1210 (1262)
Q Consensus 1200 ~DGsVrIWDlr 1210 (1262)
+..+.+-|+.
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 4566666654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.8 Score=47.40 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1092 ~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v 1171 (1262)
.+|++|+.- .|..|.|-..++ +-...+...+.-++..+.=+. ++|+|++..|+.+...|+|+++|+.... +
T Consensus 7 ~~Gk~lAi~-qd~~iEiRsa~D--df~si~~kcqVpkD~~PQWRk----l~WSpD~tlLa~a~S~G~i~vfdl~g~~--l 77 (282)
T PF15492_consen 7 SDGKLLAIL-QDQCIEIRSAKD--DFSSIIGKCQVPKDPNPQWRK----LAWSPDCTLLAYAESTGTIRVFDLMGSE--L 77 (282)
T ss_pred CCCcEEEEE-eccEEEEEeccC--CchheeEEEecCCCCCchheE----EEECCCCcEEEEEcCCCeEEEEecccce--e
Confidence 466655544 455666654443 111222222333444444455 9999999999999999999999998654 4
Q ss_pred EeecCCC------CCCeeEEEEEcCC-----CCEEEEEECCCcEEEEECCCC--C--ceeeeecCCCCCCCCeEEEEEec
Q 000836 1172 NPIPSSS------DCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTP--D--MLVCSTRPHTQQVERVVGISFQP 1236 (1262)
Q Consensus 1172 ~ti~~hs------~~~VtsLa~~s~~-----g~lLatGs~DGsVrIWDlrs~--~--~~v~~~~~~~gH~~~V~slafsp 1236 (1262)
..++... ...|..|.+.... ...|++-..+|.++-|-+..+ + .....+.-...+...|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 4444322 1135555333332 224555666788887776332 1 12223311122467899999999
Q ss_pred CCCCCEEEEec
Q 000836 1237 GLDPAKVNGTP 1247 (1262)
Q Consensus 1237 ~~~g~~LaSgS 1247 (1262)
. .+.|+.|+
T Consensus 158 ~--h~LLlVgG 166 (282)
T PF15492_consen 158 K--HRLLLVGG 166 (282)
T ss_pred C--CCEEEEec
Confidence 9 67776665
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.24 Score=55.16 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=67.1
Q ss_pred chHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcC--CCHHHHHHHHHHHhhcc
Q 000836 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sPeVRaa~v~als~~v 664 (1262)
..++.+.+-|. ++++++|.=+.++||||-... .++ .|.+.|.| ..|+||-+|..|||.+-
T Consensus 187 eaI~al~~~l~-------~~SalfrhEvAfVfGQl~s~~----------ai~-~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 187 EAINALIDGLA-------DDSALFRHEVAFVFGQLQSPA----------AIP-SLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHHhcc-------cchHHHHHHHHHHHhhccchh----------hhH-HHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 45567777777 779999999999999987652 222 34444443 48999999999999886
Q ss_pred ccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH
Q 000836 665 DIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1262)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~ 718 (1262)
+. .....|-..+.|.+++||++..++++-
T Consensus 249 ~e-------------------------~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 249 DE-------------------------DCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred CH-------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 21 123455667899999999999999974
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.24 Score=47.96 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHh
Q 000836 562 RAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631 (1262)
Q Consensus 562 ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~ 631 (1262)
|.-+.=+||.+|-+.+..|....+.|-+..++..-.-+ +.+|.+|.|+++|+-+|++++++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66677789999999999999999888888888775421 679999999999999999999998864
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.4 Score=53.35 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=52.2
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEeCCCCce-----------eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEE
Q 000836 1141 VDWQQQSGYLYASGE-VSSIMLWDLEKEQQ-----------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1141 v~wsp~~~~Llsgg~-Dg~IrIWDlrs~~~-----------~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWD 1208 (1262)
+..+|+|.++++++. +.+|.|.|+.+.+. .+.++....+. +. . .|..+|+.+.+-+.|..|-.||
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LH-T-aFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LH-T-AFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ce-E-EECCCCCEEEeEeecceeEEEe
Confidence 788999999998855 89999999988551 24444444332 32 2 5688899999999999999999
Q ss_pred CCC
Q 000836 1209 VRT 1211 (1262)
Q Consensus 1209 lrs 1211 (1262)
+..
T Consensus 403 ~~~ 405 (635)
T PRK02888 403 IEA 405 (635)
T ss_pred hHH
Confidence 875
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.5 Score=49.36 Aligned_cols=179 Identities=18% Similarity=0.197 Sum_probs=102.2
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecC-----CCcEEEEEeC----------CCeEEEEEcCCC---CCcc
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-----DVSLLLVASC----------NGNIRIWKDYDQ---KDKQ 1118 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~-----dg~lLaTgS~----------DG~IrIWD~~~~---~g~~ 1118 (1262)
..|++.|..+.+.+.++.-.. ...+++++...-. ...++++|.. .|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 468899998888777665433 2456666654212 2567887753 299999999762 1123
Q ss_pred eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEEEcCCCCEEEE
Q 000836 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAA 1197 (1262)
Q Consensus 1119 ~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~~s~~g~lLat 1197 (1262)
+++. -....+.|+++ ..+ ++.++++ ..+.|.+|++...+ .+.... .+....++++..+ +++++.
T Consensus 80 ~~i~----~~~~~g~V~ai---~~~---~~~lv~~-~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~---~~~I~v 144 (321)
T PF03178_consen 80 KLIH----STEVKGPVTAI---CSF---NGRLVVA-VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF---KNYILV 144 (321)
T ss_dssp EEEE----EEEESS-EEEE---EEE---TTEEEEE-ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE---TTEEEE
T ss_pred EEEE----EEeecCcceEh---hhh---CCEEEEe-ecCEEEEEEccCcc-cchhhheecceEEEEEEecc---ccEEEE
Confidence 3221 12234556662 223 5565554 34789999988766 222221 1122237777433 679999
Q ss_pred EECCCcEEEEECCCCCc-eeeeecCCCCCCCCeEEEEEecCCCCCEEEEecC-CceEEEec
Q 000836 1198 GFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK-CLPSFSDL 1256 (1262)
Q Consensus 1198 Gs~DGsVrIWDlrs~~~-~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSd-d~I~~WDL 1256 (1262)
|.....|.++..+.... +...-+.. ...+++++.|-++ +..++.+.. +++.++..
T Consensus 145 gD~~~sv~~~~~~~~~~~l~~va~d~--~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 145 GDAMKSVSLLRYDEENNKLILVARDY--QPRWVTAAEFLVD--EDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EESSSSEEEEEEETTTE-EEEEEEES--S-BEEEEEEEE-S--SSEEEEEETTSEEEEEEE
T ss_pred EEcccCEEEEEEEccCCEEEEEEecC--CCccEEEEEEecC--CcEEEEEcCCCeEEEEEE
Confidence 99988898885543221 22111122 2467999999877 456666664 46666544
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.096 Score=57.13 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=83.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEe-e
Q 000836 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-I 1174 (1262)
Q Consensus 1096 lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~t-i 1174 (1262)
.+..-|.||.|+-++++. .+... +.-.-+... .. ++. -+..+++|+.+|.|.+|....+. .... .
T Consensus 32 ~l~~~sa~~~v~~~~~~k--~k~s~----rse~~~~e~-~~---v~~---~~~~~~vG~~dg~v~~~n~n~~g-~~~d~~ 97 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRK--HKESC----RSERFIDEG-QR---VVT---ASAKLMVGTSDGAVYVFNWNLEG-AHSDRV 97 (238)
T ss_pred hhccccCCcccccchhhh--hhhhh----hhhhhhhcc-ee---ecc---cCceEEeecccceEEEecCCccc-hHHHhh
Confidence 455567788888888764 11110 111111111 11 122 25689999999999999887443 2222 2
Q ss_pred cCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCC-CCeEEEEEecCCCCCEEEEe--c-CCc
Q 000836 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV-ERVVGISFQPGLDPAKVNGT--P-KCL 1250 (1262)
Q Consensus 1175 ~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~-~~V~slafsp~~~g~~LaSg--S-dd~ 1250 (1262)
...... |.++-..-.++.+..+|+.||.||.|++.-.+. +... ..|+ .++........ ++.++++ | ++.
T Consensus 98 ~s~~e~-i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~---g~h~~~~~e~~ivv~s--d~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 98 CSGEES-IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYV---GQHNFESGEELIVVGS--DEFLKIADTSHDRV 170 (238)
T ss_pred hccccc-ceeccccccccceeEEeccCCceeeeccccCce-eeee---ccccCCCcceeEEecC--CceEEeeccccchh
Confidence 222232 444412223455889999999999999976652 2222 2334 45555565555 6677766 5 448
Q ss_pred eEEEeccccc
Q 000836 1251 PSFSDLIYFL 1260 (1262)
Q Consensus 1251 I~~WDLryfl 1260 (1262)
+++|++-++.
T Consensus 171 ~k~W~ve~~~ 180 (238)
T KOG2444|consen 171 LKKWNVEKIK 180 (238)
T ss_pred hhhcchhhhh
Confidence 8899987654
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.12 Score=38.85 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.9
Q ss_pred hHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhc
Q 000836 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1262)
Q Consensus 588 ~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1262)
++..++++++ |++|+||.+++.|||.+..
T Consensus 1 llp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 4577889999 9999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.4 Score=55.56 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=127.2
Q ss_pred HHHhcc--chhHHHHHHHHHHHhcCCHH-HHH--HHH-hcCChhhhhhhcCC-------CchhHHHHHHHHHHHHhccCh
Q 000836 467 LQVLLS--QCHRFRALVLLGRFLDMGPW-AVD--LAL-SVGIFPYVLKLLQT-------TTPELRQILVFIWTKILALDK 533 (1262)
Q Consensus 467 LqvLlS--~~~rlral~lL~~fld~gpw-Av~--lal-s~gifpyvlkLLqs-------~~~elr~~lvFIwa~il~~d~ 533 (1262)
+++|.+ ..+|+-+|.++.++++-++- +.. ... ++| |.+.-+||.+ +..+.+...+=|++.++++..
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~ 89 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPE 89 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChh
Confidence 455555 45899999999999998883 211 122 345 7888999997 567888899999999999532
Q ss_pred hhh-hhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHH
Q 000836 534 SCQ-VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQ 612 (1262)
Q Consensus 534 ~~Q-~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~ 612 (1262)
... .+.+ .-++.|+.++...+. .+.-..|.-||..++ .++.|+.+.++.|.+..+++.+. + .+...-
T Consensus 90 ~a~~~~~~--~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~-------~-~~~~~E 157 (543)
T PF05536_consen 90 LASSPQMV--SRIPLLLEILSSSSD-LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP-------N-QSFQME 157 (543)
T ss_pred hhcCHHHH--HHHHHHHHHHHcCCc-hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH-------h-CcchHH
Confidence 211 1222 346778888865543 467789999999999 99999999999999999999988 3 333344
Q ss_pred HHHHHHHhhhcCchhhhHhh---hccCchHHHhhhhcCCCHHHHHHHHHHHhhccccC
Q 000836 613 WLCLCLGKLWEDFTEAQTIG---RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1262)
Q Consensus 613 w~~l~Lg~l~~~~~~~~~~~---~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~ 667 (1262)
-++-.|.+++...+..-|.. .-..+...+........-+-+-+++-.|+.|+...
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 44444444444432111111 11122235666666677777888888888888543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.22 E-value=5.2 Score=48.40 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCcEEEEe-eCCCCCCCCeEEEEEeecCCCcEEEEEeCCC-------
Q 000836 1038 TKTALLQPFSPIVVAA-DENE----RIKIWNYEEDTLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNG------- 1104 (1262)
Q Consensus 1038 V~sl~fspdg~~Lasg-s~dg----~I~VWD~~tg~~l~~~-~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG------- 1104 (1262)
+....++|+|+++|.+ +..| .|+|+|+++|+.+..- ... ....+.|. .++..|+-...+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-----~~~~~~W~--~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-----KFSSVSWS--DDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-----ESEEEEEC--TTSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-----ccceEEEe--CCCCEEEEEEeCcccccccC
Confidence 4467889999988864 3333 5999999999776532 221 12348997 6666554443222
Q ss_pred ----eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe---CC-CeEEEEeCCCC---ceeeEe
Q 000836 1105 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EV-SSIMLWDLEKE---QQMVNP 1173 (1262)
Q Consensus 1105 ----~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg---~D-g~IrIWDlrs~---~~~v~t 1173 (1262)
.|+.|++.+...+..++ +.+....... +.+..+.++.+++... .+ ..+.+-|+..+ ......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lv-----fe~~~~~~~~--~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELV-----FEEPDEPFWF--VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEE-----EC-TTCTTSE--EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred CCCcEEEEEECCCChHhCeeE-----EeecCCCcEE--EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 36777775522222233 3333322211 1277889999887662 23 45888888875 113344
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCc--eeeeecCCCCCCC--CeEEEEEecCCCCCEEEEe
Q 000836 1174 IPSSSDCSISALTASQVHGGQLAAG---FVDGSVRLYDVRTPDM--LVCSTRPHTQQVE--RVVGISFQPGLDPAKVNGT 1246 (1262)
Q Consensus 1174 i~~hs~~~VtsLa~~s~~g~lLatG---s~DGsVrIWDlrs~~~--~v~~~~~~~gH~~--~V~slafsp~~~g~~LaSg 1246 (1262)
+..+.......+ ... .+.+++.. ..++.|...++..... -...+ -.|.. .+..+....+ .++++.
T Consensus 272 l~~~~~~~~~~v-~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l---~~~~~~~~l~~~~~~~~---~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYV-DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL---IPEDEDVSLEDVSLFKD---YLVLSY 343 (414)
T ss_dssp EEESSSS-EEEE-EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE---E--SSSEEEEEEEEETT---EEEEEE
T ss_pred EeCCCCceEEEE-Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE---cCCCCceeEEEEEEECC---EEEEEE
Confidence 433333312333 222 34344433 2346777777776652 11111 12233 3555555433 344444
Q ss_pred cCC---ceEEEecc
Q 000836 1247 PKC---LPSFSDLI 1257 (1262)
Q Consensus 1247 Sdd---~I~~WDLr 1257 (1262)
.++ .+.++|+.
T Consensus 344 ~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 RENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEEEETT
T ss_pred EECCccEEEEEECC
Confidence 444 77777765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=12 Score=45.11 Aligned_cols=183 Identities=14% Similarity=0.171 Sum_probs=117.1
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE-eCCCeEEEEEcC
Q 000836 1037 GTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDY 1112 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~---dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg-S~DG~IrIWD~~ 1112 (1262)
.+..++++++++.+.++.. ++++.+.|..+++.+....... .+ ..+.+. ++|..+.+. +.++.|.+.|..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~---~P-~~~a~~--p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN---TP-TGVAVD--PDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC---Cc-ceEEEC--CCCCeEEEEecCCCeEEEEeCC
Confidence 6788999999988888765 6889999999998888866555 33 678886 788855544 578999999965
Q ss_pred CCCCcceEEeeeeeccCC-CCcccccceeEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeEe-ecCCCCCCeeEEEE
Q 000836 1113 DQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNP-IPSSSDCSISALTA 1187 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h-~~~V~sv~l~v~wsp~~~~Llsgg~D---g~IrIWDlrs~~~~v~t-i~~hs~~~VtsLa~ 1187 (1262)
. ..+. + -... ...+......+.+++++..+++.-.. +.+.+.|..++. .... ...... ....+ .
T Consensus 191 ~----~~v~---~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~-~~~~v-~ 259 (381)
T COG3391 191 G----NSVV---R-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGSG-APRGV-A 259 (381)
T ss_pred C----ccee---c-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEeccccccC-CCCce-e
Confidence 4 1111 1 0000 00111111127888999988888443 589999999887 5444 333332 13445 6
Q ss_pred EcCCCCEEEEEEC-CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1188 SQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1188 ~s~~g~lLatGs~-DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
..+.|..+.+... .+.|.+-|..+.. ..........-...+..+++.+.
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDR-VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCc-eeeeecccccccccceeccceee
Confidence 7888988877744 4889999988766 33332222222233455555444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.81 E-value=13 Score=43.66 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=94.4
Q ss_pred EEEEEcCCCCEEEEE--eCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 000836 1039 KTALLQPFSPIVVAA--DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasg--s~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g 1116 (1262)
....++.+|+++++. +-...|.|-|+..++.+..+..-. + .+.+ +....-|.+-|.||++.-..+.. .|
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C--~~iy--P~~~~~F~~lC~DGsl~~v~Ld~-~G 168 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----C--WLIY--PSGNRGFSMLCGDGSLLTVTLDA-DG 168 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----E--EEEE--EEETTEEEEEETTSCEEEEEETS-TS
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----E--EEEE--ecCCCceEEEecCCceEEEEECC-CC
Confidence 345788899988874 345679999999888887775432 1 1223 11223466667777777666653 23
Q ss_pred cceEEeeeeeccC-------C---------------CCccccc----------------------------c-eeEEEcC
Q 000836 1117 KQKLVTAFSSIQG-------H---------------KPGVRCS----------------------------N-VVVDWQQ 1145 (1262)
Q Consensus 1117 ~~~lvsa~~~l~~-------h---------------~~~V~sv----------------------------~-l~v~wsp 1145 (1262)
+...... ..+.. | .+.|..+ | -.+++++
T Consensus 169 k~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 169 KEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CEeEeec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 3221110 00000 0 0000000 0 0156666
Q ss_pred CCCEEEEE---eCC-------CeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCc
Q 000836 1146 QSGYLYAS---GEV-------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDM 1214 (1262)
Q Consensus 1146 ~~~~Llsg---g~D-------g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatG-s~DGsVrIWDlrs~~~ 1214 (1262)
..+.|++- +.+ ..|.++|+.+.+ .+..++.... +.+|..-+.+..+|++. ..+|.+.|||..+++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk- 323 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIPLEHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK- 323 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEEEEEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT---
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEEEeCCCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc-
Confidence 66666665 222 247788999998 8888886433 77885555555577654 458999999999987
Q ss_pred eeeeecCC
Q 000836 1215 LVCSTRPH 1222 (1262)
Q Consensus 1215 ~v~~~~~~ 1222 (1262)
.++.+...
T Consensus 324 ~~~~~~~l 331 (342)
T PF06433_consen 324 LVRSIEQL 331 (342)
T ss_dssp EEEEE---
T ss_pred EEeehhcc
Confidence 55555433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.2 Score=54.09 Aligned_cols=167 Identities=14% Similarity=0.264 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCChhhhhhhcCCCc-hhHHHHHHHHHHHHhccC------hhhhhhhhccccHHHHHHhhcCCCC-cHHHH
Q 000836 491 PWAVDLALSVGIFPYVLKLLQTTT-PELRQILVFIWTKILALD------KSCQVDLVKDGGHAYFIRFLDSMEA-YPEQR 562 (1262)
Q Consensus 491 pwAv~lals~gifpyvlkLLqs~~-~elr~~lvFIwa~il~~d------~~~Q~dl~k~~~~~yf~~~L~~~~~-~~e~r 562 (1262)
+-++......+++|-++.+++... +.+=-+++.|+-.++... ..+...++. .+....+..|..... .+|..
T Consensus 218 ~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~l~~~l~~L~~rk~~DedL~ 296 (429)
T cd00256 218 PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CKVLKTLQSLEQRKYDDEDLT 296 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cChHHHHHHHhcCCCCcHHHH
Confidence 345555567899999999998543 344457888998888743 123233332 233334444432111 01222
Q ss_pred HHHHHHHHHHhcCC---------------------hhh-----------hHHHHhhchHHHHHHhhcCCCCCCCCCcHHH
Q 000836 563 AMAAFVLAVIVDGH---------------------RRG-----------QEACIEAGLIHVCLKHLQGSMPNDAQTEPLF 610 (1262)
Q Consensus 563 a~aafiLs~l~~~~---------------------~~g-----------q~~~~~~~~~~~~~~~L~~~~~~~~~~~P~v 610 (1262)
..-.++-..+-+.+ |.+ +..--+-.++.++.++|.. +.+|.+
T Consensus 297 edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~d~~~ 370 (429)
T cd00256 297 DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SVDPII 370 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CCCcce
Confidence 22222222221111 111 1111123566788888853 457888
Q ss_pred HHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 611 LQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 611 R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
-+-+|.=+|.|+..++++|.+.-+.++-+.+..|++++.|+||.+|+.++..++
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999888999999999999999999999999999886
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.62 E-value=4.7 Score=45.06 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=79.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeee
Q 000836 1046 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1125 (1262)
Q Consensus 1046 dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~ 1125 (1262)
...+++.|+..+.+.--|..+|+....-.-. .+|-+-+.. -|++++.|+..|.+.+.+..+ |..- -.+.
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~--w~f~ 90 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQI--WNFV 90 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhhe--eeee
Confidence 3457788998999999999999876543222 344444432 467899999999999999987 4221 1112
Q ss_pred eccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCC
Q 000836 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1126 ~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~ 1179 (1262)
... .|... ....++++.+++|+.|+.....|.++.. ++.+.+...+
T Consensus 91 ~~~----~vk~~---a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~ 136 (354)
T KOG4649|consen 91 ILE----TVKVR---AQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGG 136 (354)
T ss_pred ehh----hhccc---eEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCc
Confidence 221 12211 2234679999999999999999999999 9888765443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.92 Score=56.10 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=101.1
Q ss_pred cccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhc----hHHHHHHhhcCCCCCCCCCcHHHHHHHHHH
Q 000836 542 DGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAG----LIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1262)
Q Consensus 542 ~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~----~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~ 617 (1262)
+.+.+.++..|++++...-.-++. .|+.+|+|-.+--..-.... ++.+.++..+ +++|.+|.-++-|
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~--AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-------h~spkiRs~A~~c 197 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFG--ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-------HPSPKIRSHAVGC 197 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHH--HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-------CCChhHHHHHHhh
Confidence 456677888887776322223333 46778877654322211122 3456667777 8899999999999
Q ss_pred HHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 000836 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSL 697 (1262)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 697 (1262)
+-+++-....+-...++. +.+.+..|-+|..|||||-+|-+|..++....|.... --.+++.-+
T Consensus 198 vNq~i~~~~qal~~~iD~-Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p---------------hl~~IveyM 261 (885)
T KOG2023|consen 198 VNQFIIIQTQALYVHIDK-FLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP---------------HLDNIVEYM 261 (885)
T ss_pred hhheeecCcHHHHHHHHH-HHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc---------------chHHHHHHH
Confidence 999998876666555554 4457888889999999999999999999665442221 012344445
Q ss_pred HhhccCCChhhHHHHHHHHHHHH
Q 000836 698 LTVVSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 698 l~~~~D~sp~VR~E~~~~ls~~~ 720 (1262)
|....|..-.|.-|+.-+...+.
T Consensus 262 L~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHHh
Confidence 55556666666666666554443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.19 Score=40.07 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=34.9
Q ss_pred hhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
++.+..-++.++...|..||+++.++||.+++++|+++.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999874
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.4 Score=48.18 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=111.4
Q ss_pred hccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Q 000836 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1262)
Q Consensus 540 ~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1262)
+..+.++.++.+|+..+- |..+..+.+.|+. +-.|+..|..-.+.|.+..+..+|+ +|+|.+|.=++-+|.
T Consensus 9 l~~~~l~~Ll~lL~~t~d-p~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-PFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHH
Confidence 445567889999986554 6778888899988 6789999999999999999999999 899999999999999
Q ss_pred hhhcCchhhhHhhhccCchHHHhhhhcCC-CHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 000836 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698 (1262)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 698 (1262)
+|=.+.+... .++..+...+...+.++ ..+|.-+.+=+|.++--. .++.+ .. ...+..++
T Consensus 80 Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~------------~~~~~--~l---~~~i~~ll 140 (254)
T PF04826_consen 80 NLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT------------NDYHH--ML---ANYIPDLL 140 (254)
T ss_pred hcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC------------cchhh--hH---HhhHHHHH
Confidence 9976654443 34555554444455543 467777888888887411 11111 11 22344567
Q ss_pred hhccCCChhhHHHHHHHHHHHHHh
Q 000836 699 TVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 699 ~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.++.-|+..+|..+...+..+...
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhccC
Confidence 777788888888888877665533
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.3 Score=63.04 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCC
Q 000836 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226 (1262)
Q Consensus 1147 ~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~ 1226 (1262)
+..+++|++.|.|-..|.+..- +-..-..+..++|+++ +++.+|..++.|..+|.|.+||+..++ +.+.+. .|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsv-afn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~---e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSV-AFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVIT---EHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceee-EecCCCceeccccCCCcEEEEEccCCc-ceeeee---ecC
Confidence 5567778888888888876644 2112223334469999 899999999999999999999998877 444442 233
Q ss_pred CCeEEEEE---ecCCCCCEEEEecCCceEEEecccc
Q 000836 1227 ERVVGISF---QPGLDPAKVNGTPKCLPSFSDLIYF 1259 (1262)
Q Consensus 1227 ~~V~slaf---sp~~~g~~LaSgSdd~I~~WDLryf 1259 (1262)
.+.+++-+ ..+ +..++++.. .-.||.+.|-
T Consensus 173 ap~t~vi~v~~t~~--nS~llt~D~-~Gsf~~lv~n 205 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQ--NSKLLTSDT-GGSFWKLVFN 205 (1206)
T ss_pred CccceEEEEEEeCC--CcEEEEccC-CCceEEEEec
Confidence 44444443 333 334555543 3348887653
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.98 E-value=24 Score=43.03 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=88.0
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCC-CCCCCe-----EEEEEeecCCCcEEEEEeC
Q 000836 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD-FPDKGI-----SKLCLVNELDVSLLLVASC 1102 (1262)
Q Consensus 1029 ~w~~~~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~-~~~~~I-----tsL~fsn~~dg~lLaTgS~ 1102 (1262)
.|+. +.+.++.|..++.++++. .||.+++||+. |+. .|.-.. .....| ....+. .+|-.+++ .
T Consensus 77 ~w~~---~~iv~~~wt~~e~LvvV~-~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~--~~GivvLt--~ 145 (410)
T PF04841_consen 77 PWDS---GRIVGMGWTDDEELVVVQ-SDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFY--KNGIVVLT--G 145 (410)
T ss_pred EECC---CCEEEEEECCCCeEEEEE-cCCEEEEEeCC-Cce--eechhhhccccCcccccccccccC--CCCEEEEC--C
Confidence 3554 679999999876655554 69999999997 444 221110 000122 222221 24433343 3
Q ss_pred CCeEEEEEcCCCCCcceEEeeeeeccCCCC---cccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCC
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKP---GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~---~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~ 1179 (1262)
++.+.+..........+.. ........ .......+..+..+....+....++.+.+-|-...+ .+.. .+
T Consensus 146 ~~~~~~v~n~~~~~~~~~~---~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----~i~~-~~ 217 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRL---PEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----QIDS-DG 217 (410)
T ss_pred CCeEEEEeCccccchhhcc---ccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----cccC-CC
Confidence 4444444332211010000 00111000 000000001233334444444444555533322212 1222 12
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecC
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1180 ~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~ 1237 (1262)
.+..| +.+++|+.+|.-..+|.+.|.+..-.+ ....+... -......+.|.-+
T Consensus 218 -~i~~i-avSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~~--~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 218 -PIIKI-AVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDTD--SKSPPKQMAWCGN 270 (410)
T ss_pred -CeEEE-EECCCCCEEEEEECCCCEEEEECcccc-eeEEeecC--cCCCCcEEEEECC
Confidence 38999 889999999999999999998776554 23333221 1234456666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.69 Score=58.96 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCch
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1262)
Q Consensus 559 ~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1262)
+..|+-+.+-||.+|-.+.. +-..++..++..|+- ....-+|-=.++++|-|+..|..- -+...
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~------~~~~aiRnNiV~am~D~C~~YTam-----~d~Yi 1008 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEY------NTAHAIRNNIVLAMGDICSSYTAM-----TDRYI 1008 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHh------hhHHHHhcceeeeehhhHHHHHHH-----HHHhh
Confidence 78899888889988854433 344567778888874 346778999999999999887442 23333
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH
Q 000836 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1262)
Q Consensus 639 ~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~ 718 (1262)
.++...|.|++|.||+-+++.|++++.+. +... --.+....+-.+-|.++.+|.-+-..++.
T Consensus 1009 P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~-------------~vKw-----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1009 PMIAASLCDPSVIVRRQTIILLARLLQFG-------------IVKW-----NGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhh-------------hhhc-----chhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 48999999999999999999999999542 1111 11233333344559999999999999999
Q ss_pred HHHh-----hhhhHHHHhhh
Q 000836 719 FAFG-----HKQHLKSIAAA 733 (1262)
Q Consensus 719 ~~~~-----~~~~f~~~a~~ 733 (1262)
++.. +-.+|++.-+.
T Consensus 1071 vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1071 VLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred HHhhcCccchHHHHHHHHHH
Confidence 8865 44667776554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=91.48 E-value=30 Score=42.02 Aligned_cols=207 Identities=7% Similarity=0.045 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-------------------------EeeCCC--------------
Q 000836 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN-------------------------SFDNHD-------------- 1077 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~-------------------------~~~~h~-------------- 1077 (1262)
.|+.+.|.++..-|++|...|.|.||.+...+.-. .+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999999875432111 110000
Q ss_pred -CCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccC------CCCccccccee-EEEcCCC--
Q 000836 1078 -FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVV-VDWQQQS-- 1147 (1262)
Q Consensus 1078 -~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~------h~~~V~sv~l~-v~wsp~~-- 1147 (1262)
...+.|++++.+ |-.+++.|..+|.+.|.|++. +.++.. ..+.. ....++++.+. +....++
T Consensus 83 ~~~~g~vtal~~S---~iGFvaigy~~G~l~viD~RG----PavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKNS---DIGFVAIGYESGSLVVIDLRG----PAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE----BTSEEEEEETTSEEEEEETTT----TEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEecC---CCcEEEEEecCCcEEEEECCC----CeEEee-ccccccccccccccCeeEEEEEEEecCCCccc
Confidence 013789999986 678999999999999999964 333322 12222 22334442111 2222333
Q ss_pred -CEEEEEeCCCeEEEEeCCC---Cce---eeEeecCCCCCCeeEEEEEcCC--------------------CCEEEEEEC
Q 000836 1148 -GYLYASGEVSSIMLWDLEK---EQQ---MVNPIPSSSDCSISALTASQVH--------------------GGQLAAGFV 1200 (1262)
Q Consensus 1148 -~~Llsgg~Dg~IrIWDlrs---~~~---~v~ti~~hs~~~VtsLa~~s~~--------------------g~lLatGs~ 1200 (1262)
-.+++|.+.|.+.+|.+-- +.. .......+.+. |..|..+..+ -+-++....
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~-i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSP-ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCc-eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688888999999997752 110 11122123332 5555433211 112333444
Q ss_pred CCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEec----CCCCCEEEEec-CCceEEEecc
Q 000836 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP----GLDPAKVNGTP-KCLPSFSDLI 1257 (1262)
Q Consensus 1201 DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp----~~~g~~LaSgS-dd~I~~WDLr 1257 (1262)
+..+||+..-+.+...+.+ .. .-....+.+-+ . ++..|++-. ++.++++-+.
T Consensus 234 e~~irv~~~~~~k~~~K~~-~~---~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSF-DD---PFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp SSEEEEE-TT---EEEEE--SS----EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETT
T ss_pred ccceEEEeCCCCcccceee-cc---ccccceEEEEeecccC-CceEEEEEECCCcEEEEECC
Confidence 6789999988776433333 11 11222333321 1 144454444 4577776653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.5 Score=49.34 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcccccceeccCCCHHHHHHHHHHhcccC---CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeccchH
Q 000836 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA---KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPIS 227 (1262)
Q Consensus 151 ~~l~~qy~~~~~~~~~~~~~dp~~~~~~~~~~~~r~~~---~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t~y~p~~~~ 227 (1262)
+.|..-++++ .-.+....|.+.+++++.+..+.+.. ..+-++|-|-|||. .|.|+--|.. ++++.
T Consensus 33 ~~l~~~f~~l--gF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-----~~~l~~~D~~-----~v~l~ 100 (241)
T smart00115 33 ENLTELFQSL--GYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-----EGGIYGTDHS-----PLPLD 100 (241)
T ss_pred HHHHHHHHHC--CCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-----CCeEEEecCC-----EEEHH
Confidence 3444555443 33556789999999999998887642 34567888999995 4677766643 67888
Q ss_pred HHhhhc---------CCCeEEEEeCCchhhHHHHHHhhccCCCCCCCCCCCceEEEEecCCcCCCCCCCCCCchhhhhcc
Q 000836 228 DLDSWL---------KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCL 298 (1262)
Q Consensus 228 ~l~~~~---------~~p~~~v~Dc~~Ag~i~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lP~DlftscL 298 (1262)
+|.+.+ |.|-+||+|..-....-..+... .. . ... .+......+. ...-++|+|-+.-
T Consensus 101 ~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~---~~----~-~~~----~~~~~~~~~~-~~p~~~D~li~ys 167 (241)
T smart00115 101 EIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVE---DD----V-DDP----PTEFEDDAIY-KIPVEADFLAAYS 167 (241)
T ss_pred HHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeecc---cc----c-ccc----cccccccccc-cCCCcCcEEEEEe
Confidence 888877 67999999987543211111000 00 0 000 0001111111 2224789999999
Q ss_pred cchHHHHHH
Q 000836 299 TTPITMALR 307 (1262)
Q Consensus 299 ~tP~~~al~ 307 (1262)
|.|-.+|.+
T Consensus 168 T~pG~va~r 176 (241)
T smart00115 168 TTPGYVSWR 176 (241)
T ss_pred CCCCeEeec
Confidence 999988764
|
Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=1.5 Score=55.47 Aligned_cols=162 Identities=23% Similarity=0.339 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhc-cChhhhhhhhccccHHHHHHhhc
Q 000836 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILA-LDKSCQVDLVKDGGHAYFIRFLD 553 (1262)
Q Consensus 475 ~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~-~d~~~Q~dl~k~~~~~yf~~~L~ 553 (1262)
-|..|+.-.-..+-.|. .++ +.||=|+|..+.-.-|+|.| ++...+.-+ ..|..+.-++ +.|++ +
T Consensus 29 kr~~a~kkvIa~Mt~G~---DvS---slF~dvvk~~~T~dlelKKl-vyLYl~nYa~~~P~~a~~av-----nt~~k--D 94 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGK---DVS---SLFPDVVKCMQTRDLELKKL-VYLYLMNYAKGKPDLAILAV-----NTFLK--D 94 (734)
T ss_pred hHHHHHHHHHhcCccCc---chH---hhhHHHHhhcccCCchHHHH-HHHHHHHhhccCchHHHhhh-----hhhhc--c
Confidence 35555554444454441 222 56999999999888899998 444444333 3333332111 22222 2
Q ss_pred CCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhh
Q 000836 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGR 633 (1262)
Q Consensus 554 ~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~ 633 (1262)
..+..|+.|.+|.=-++.+- .+ .+-..+++-|...++ |..|.+|..+.+|+++|.....+ ++.
T Consensus 95 ~~d~np~iR~lAlrtm~~l~--v~-----~i~ey~~~Pl~~~l~-------d~~~yvRktaa~~vakl~~~~~~---~~~ 157 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLR--VD-----KITEYLCDPLLKCLK-------DDDPYVRKTAAVCVAKLFDIDPD---LVE 157 (734)
T ss_pred CCCCCHHHHHHHhhceeeEe--eh-----HHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHhhcCChh---hcc
Confidence 33334677777654443322 11 134456677888888 88999999999999999987544 677
Q ss_pred ccCchHHHhhhhcCCCHHHHHHHHHHHhhccccC
Q 000836 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1262)
Q Consensus 634 ~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~ 667 (1262)
..+....|-.++.|.+|+|=|.|+-+|..+....
T Consensus 158 ~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 158 DSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 8888889999999999999999999999998553
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.1 Score=52.34 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=80.6
Q ss_pred HhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCc
Q 000836 528 ILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTE 607 (1262)
Q Consensus 528 il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~ 607 (1262)
-+-.||.| .++|. +-+.|.++.+++++. -.|--|+=+|+.+.+...+--. .+-.++...+.+.+- |-.
T Consensus 78 ~~~~dpeg-~~~V~-~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~-------DRE 145 (885)
T COG5218 78 DMPDDPEG-EELVA-GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLF-------DRE 145 (885)
T ss_pred cCCCChhh-hHHHH-HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHh-------cch
Confidence 34456776 35553 345566666677775 6688899999999988877333 355677777777777 778
Q ss_pred HHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHh
Q 000836 608 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1262)
Q Consensus 608 P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als 661 (1262)
|-||.=++.||.++-+....-+..... ..+.-+.+|||.|||.+++.-++
T Consensus 146 ~~VR~eAv~~L~~~Qe~~~neen~~~n----~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 146 KAVRREAVKVLCYYQEMELNEENRIVN----LLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHHHhccCChHHHHHH----HHHHHHhcCcHHHHHHHHHHHee
Confidence 999999999999987653222211111 12334558999999999877654
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.60 E-value=3.9 Score=50.99 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhcC---ChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccC
Q 000836 560 EQRAMAAFVLAVIVDG---HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 636 (1262)
Q Consensus 560 e~ra~aafiLs~l~~~---~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~ 636 (1262)
..++-+|.|+=.+.+. ...| --...+...++.+|. +|+-.|.-..+=+|-+|.-++..-|..-++.+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg---~~~~dv~~plvqll~-------dp~~~i~~~~lgai~NlVmefs~~kskfl~~n 461 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTG---LKRNDVAQPLVQLLM-------DPEIMIMGITLGAICNLVMEFSNLKSKFLRNN 461 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CccchhHHHHHHHhh-------CcchhHHHHHHHHHHHHHhhcccHHHHHHHcC
Confidence 4566556655433321 1222 113456678888887 88999999999999999999999999999999
Q ss_pred chHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHH-HHHhhccCCChhhHHHHHHH
Q 000836 637 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR-SLLTVVSDGSPLVRAEVAVA 715 (1262)
Q Consensus 637 ~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ll~~~~D~sp~VR~E~~~~ 715 (1262)
..+++..++.|+-+-+|+-++++|-++. ...++.++.+-...+-. .++.+.+|+.+.|-+.....
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~--------------f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLM--------------FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHH--------------hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 12222222233344433 45668899999999999888
Q ss_pred HHHHHHh
Q 000836 716 LARFAFG 722 (1262)
Q Consensus 716 ls~~~~~ 722 (1262)
+--++..
T Consensus 528 lRNl~c~ 534 (678)
T KOG1293|consen 528 LRNLTCN 534 (678)
T ss_pred HHHhhcC
Confidence 8776655
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.7 Score=53.92 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=78.2
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhc
Q 000836 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 584 ~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~ 663 (1262)
+.+|++..++.-|+ |+--|||.++...|+.|-...+. ....+..-|..+++|.--+||--++++|..+
T Consensus 370 I~sGACGA~VhGlE-------DEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 370 IPSGACGALVHGLE-------DEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVDMFNDEIEVVRLKAIFALTMI 437 (823)
T ss_pred ccccccceeeeech-------HHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55666777777777 77789999999999999876433 1222344688899999999999999999998
Q ss_pred cccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH
Q 000836 664 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1262)
Q Consensus 664 v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~ 718 (1262)
... ..+..+....++..+.|.|+.||.++.-.|..
T Consensus 438 s~~--------------------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 438 SVH--------------------LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHH--------------------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 721 22233445677888999999999999888764
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.31 E-value=9.6 Score=41.91 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred CEEEEEeCCCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCC---C---eEEEEEcCCCCCcce
Q 000836 1048 PIVVAADENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---G---NIRIWKDYDQKDKQK 1119 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~t--g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~D---G---~IrIWD~~~~~g~~~ 1119 (1262)
+.|+.+.....|.+|++.+ .+.+.+|..- +.|..+.++ ..|++++|--.+ . .+|+|-.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv----~~V~~l~y~--~~GDYlvTlE~k~~~~~~~fvR~Y~N-------- 94 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV----GRVLQLVYS--EAGDYLVTLEEKNKRSPVDFVRAYFN-------- 94 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch----hheeEEEec--cccceEEEEEeecCCccceEEEEEEE--------
Confidence 4555545578899999883 3566677544 478899997 789999986433 2 5666543
Q ss_pred EEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEE
Q 000836 1120 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1199 (1262)
Q Consensus 1120 lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs 1199 (1262)
|+........+.. . +. |+-+.++..+.. .... .+-.++.... +.++++.+..|++++++
T Consensus 95 ----Wr~~~~~~~~v~v-R--ia-----G~~v~~~~~~~~-----~~ql-eiiElPl~~~--p~ciaCC~~tG~LlVg~- 153 (215)
T PF14761_consen 95 ----WRSQKEENSPVRV-R--IA-----GHRVTPSFNESS-----KDQL-EIIELPLSEP--PLCIACCPVTGNLLVGC- 153 (215)
T ss_pred ----hhhhcccCCcEEE-E--Ec-----ccccccCCCCcc-----ccce-EEEEecCCCC--CCEEEecCCCCCEEEEc-
Confidence 2222122222221 0 00 111111111111 1112 3455555333 78888888889888755
Q ss_pred CCCcEEEEECCCCCcee---eeecCCC-----CCCC-CeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1200 VDGSVRLYDVRTPDMLV---CSTRPHT-----QQVE-RVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1200 ~DGsVrIWDlrs~~~~v---~~~~~~~-----gH~~-~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
++++.+|.++...... +.+ .+. -|.+ ....+++..+ ++|..++..+.+..+
T Consensus 154 -~~~l~lf~l~~~~~~~~~~~~l-DFe~~l~~~~~~~~p~~v~ic~~----yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 154 -GNKLVLFTLKYQTIQSEKFSFL-DFERSLIDHIDNFKPTQVAICEG----YIAVMSDLEVLVLKL 213 (215)
T ss_pred -CCEEEEEEEEEEEEecccccEE-echhhhhheecCceEEEEEEEee----EEEEecCCEEEEEEE
Confidence 4788899776432101 111 111 1122 3567777755 888888876665443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.1 Score=43.06 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=56.5
Q ss_pred HHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhh
Q 000836 566 AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL 645 (1262)
Q Consensus 566 afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll 645 (1262)
.+.|+.++-..+.. ..-.-..+++.++..+. |+++.||..+|=+|.++.......- ...-..+-..|.+++
T Consensus 7 li~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~-------D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 7 LIGLAAVAIALGKD-ISKYLDEILPPVLKCFD-------DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHHHchHh-HHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444333332 22244567777778888 9999999999999999986543221 122233445788999
Q ss_pred cCCCHHHHHHHHH
Q 000836 646 SEPQPEVRASAVF 658 (1262)
Q Consensus 646 ~D~sPeVRaa~v~ 658 (1262)
.|+.|.||.++-.
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 9999999999854
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.18 E-value=30 Score=39.83 Aligned_cols=169 Identities=9% Similarity=0.121 Sum_probs=106.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCC
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~ 1115 (1262)
..+.++.|+|+.+.|++......-.||=..+|+.+++++-... ..--.|.|+ .++.+.++--.++.+.++.+....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYI--GGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--CChhHeEEe--cCCEEEEEehhcceEEEEEEcCCc
Confidence 3489999999999999888888888888888999998764321 223457887 566777777788898888876521
Q ss_pred CcceEEeeeeeccC--C-CCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeEeecCCCCC------CeeE
Q 000836 1116 DKQKLVTAFSSIQG--H-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC------SISA 1184 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~--h-~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~--~v~ti~~hs~~------~Vts 1184 (1262)
........--.+.. + +..--+ ++|.+.++.++++-.-+-++|+-+..... .+.....+... .|.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEG----lA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEG----LAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCCCcCcee----eecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 11111100001111 1 233344 89999999999997776677766553320 01111111110 1555
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTP 1212 (1262)
Q Consensus 1185 La~~s~~g~lLatGs~DGsVrIWDlrs~ 1212 (1262)
+......+++++-+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 6444457788888888888888887643
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.7 Score=52.19 Aligned_cols=187 Identities=17% Similarity=0.169 Sum_probs=115.8
Q ss_pred hhhhhhhcCCCchhHHHHHHHHHHHHhcc-Chhhh---hhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChh
Q 000836 503 FPYVLKLLQTTTPELRQILVFIWTKILAL-DKSCQ---VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1262)
Q Consensus 503 fpyvlkLLqs~~~elr~~lvFIwa~il~~-d~~~Q---~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~ 578 (1262)
.-|++.-+.+-....|..+--|+-+=++. +.+-+ .+.+| .-|++-|.+.+ ++.|+-...++..|......
T Consensus 50 L~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK----s~~l~~lgd~~--~lIr~tvGivITTI~s~~~~ 123 (885)
T KOG2023|consen 50 LIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK----SECLHGLGDAS--PLIRATVGIVITTIASTGGL 123 (885)
T ss_pred eeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH----HHHHhhccCch--HHHHhhhhheeeeeeccccc
Confidence 34555555554445555554454333332 11111 11112 23455555555 48899988888887755443
Q ss_pred hhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHh-----hhccCchHHHhhhhcCCCHHHH
Q 000836 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI-----GRRADAPAIYVPLLSEPQPEVR 653 (1262)
Q Consensus 579 gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~-----~~~~~~~~~l~~ll~D~sPeVR 653 (1262)
.-| ..++..++++|. .++-...--+.=+|.+++++..+--+. -++.. ..+++...++++|-+|
T Consensus 124 ~~w----pelLp~L~~~L~-------s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~m-ipkfl~f~~h~spkiR 191 (885)
T KOG2023|consen 124 QHW----PELLPQLCELLD-------SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIM-IPKFLQFFKHPSPKIR 191 (885)
T ss_pred ccc----hhHHHHHHHHhc-------CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHh-HHHHHHHHhCCChhHH
Confidence 222 677888999998 444444446788999999985443222 12222 3388889999999999
Q ss_pred HHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 654 aa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
+.++..+.+||-.... . --.+++ .-...|..+.+|.+|+|||.+..++..+...
T Consensus 192 s~A~~cvNq~i~~~~q-------------a-l~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 192 SHAVGCVNQFIIIQTQ-------------A-LYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHHhhhhheeecCcH-------------H-HHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999943211 0 011222 2234567778999999999999999877743
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.6 Score=47.37 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=106.2
Q ss_pred CChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhh
Q 000836 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1262)
Q Consensus 501 gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq 580 (1262)
-...+++++|.++...+|.-.++.++.+ .. ..-...+...|.+++. ..|..++++|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----~~-------~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----GS-------EEAVPLLRELLSDEDP--RVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----ch-------HHHHHHHHHHhcCCCH--HHHHHHHHHHHccC-------
Confidence 3567888999888667766655553211 11 1234556667766663 77999999776643
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCC----------H
Q 000836 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ----------P 650 (1262)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s----------P 650 (1262)
....+..++..|.. |++..||..+..+||.+-.... ...++.+++|.. +
T Consensus 103 ----~~~a~~~li~~l~~------d~~~~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 103 ----DPEAVPPLVELLEN------DENEGVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred ----ChhHHHHHHHHHHc------CCcHhHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccch
Confidence 34566778888873 6889999999999998876532 335666666655 3
Q ss_pred --HHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 651 --EVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 651 --eVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.||.+++.+|+.+-. ......+...+.|....||..++.++..+...
T Consensus 162 ~~~~r~~a~~~l~~~~~-------------------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 162 LLDVRAAAAEALGELGD-------------------------PEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHHHHHcCC-------------------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 589999999998751 11224456666777778888888888777655
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.71 E-value=3 Score=52.25 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhh
Q 000836 476 RFRALVLLGRFLDMGP---WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1262)
Q Consensus 476 rlral~lL~~fld~gp---wAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L 552 (1262)
--|-+.++++|+.-=| ---. +=.|+|.|+++-+.++..-+|-=+.-|+++++..-..---+++. ........-|
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl 135 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHH
Confidence 3466777888874222 0001 33689999999999999889888889999998732221122222 2223333334
Q ss_pred cCCCCcHHHHHHHHHHHHHHhcC-ChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhh-------hcC
Q 000836 553 DSMEAYPEQRAMAAFVLAVIVDG-HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL-------WED 624 (1262)
Q Consensus 553 ~~~~~~~e~ra~aafiLs~l~~~-~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l-------~~~ 624 (1262)
.+.+ |-.|--|.++|+.+=.+ ..+ +..+.+.+..++++ ||++|||.++++++..= ++.
T Consensus 136 ~Dre--p~VRiqAv~aLsrlQ~d~~de------e~~v~n~l~~liqn------DpS~EVRRaaLsnI~vdnsTlp~IveR 201 (892)
T KOG2025|consen 136 KDRE--PNVRIQAVLALSRLQGDPKDE------ECPVVNLLKDLIQN------DPSDEVRRAALSNISVDNSTLPCIVER 201 (892)
T ss_pred hccC--chHHHHHHHHHHHHhcCCCCC------cccHHHHHHHHHhc------CCcHHHHHHHHHhhccCcccchhHHHH
Confidence 3443 35699999999997633 222 45788899999986 99999999999987632 221
Q ss_pred chhh----hHhhhccCc-------------hHHHhhhhcCCCHHHHHHHHHHHhh
Q 000836 625 FTEA----QTIGRRADA-------------PAIYVPLLSEPQPEVRASAVFSLGT 662 (1262)
Q Consensus 625 ~~~~----~~~~~~~~~-------------~~~l~~ll~D~sPeVRaa~v~als~ 662 (1262)
..++ +.+...-.+ ...|..-|+|..--||.|++=+|..
T Consensus 202 arDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 202 ARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1111 111111111 1134456789999999999877765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.91 Score=37.72 Aligned_cols=35 Identities=6% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL 1070 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l 1070 (1262)
...|.+++|+|..+++|.|+.+|.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 466999999999999999999999999998 45543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=89.39 E-value=22 Score=41.53 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=88.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcC
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~-~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~ 1112 (1262)
..++|++++-- +..|++|. ++.|.+|++...+ .+..-..+. ...|+++... +++++.|.....|.++...
T Consensus 87 ~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~~----~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 87 VKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDS--PFYITSLSVF----KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp ESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-B--SSSEEEEEEE----TTEEEEEESSSSEEEEEEE
T ss_pred ecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecc--eEEEEEEecc----ccEEEEEEcccCEEEEEEE
Confidence 35668877655 44566666 6899999999877 444333322 1478888774 5699999988888888665
Q ss_pred CCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCC---------c-eeeEeecCCCCCCe
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE---------Q-QMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~---------~-~~v~ti~~hs~~~V 1182 (1262)
....+...+ -+ .....++.+ +.+-.++..++++..+|.+.++..... + ..+..+..+ ..|
T Consensus 158 ~~~~~l~~v--a~--d~~~~~v~~----~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg--~~v 227 (321)
T PF03178_consen 158 EENNKLILV--AR--DYQPRWVTA----AEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG--DIV 227 (321)
T ss_dssp TTTE-EEEE--EE--ESS-BEEEE----EEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S--S-E
T ss_pred ccCCEEEEE--Ee--cCCCccEEE----EEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC--Ccc
Confidence 411222222 11 112334555 556544568888889999999877531 1 022333333 337
Q ss_pred eEEEEEc--C---CC-----CEEEEEECCCcEEEE
Q 000836 1183 SALTASQ--V---HG-----GQLAAGFVDGSVRLY 1207 (1262)
Q Consensus 1183 tsLa~~s--~---~g-----~lLatGs~DGsVrIW 1207 (1262)
+++...+ + .. +.++.|+.+|.|-+.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 7773222 2 11 248888899998744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.37 E-value=43 Score=37.87 Aligned_cols=153 Identities=14% Similarity=0.257 Sum_probs=85.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcce---EE
Q 000836 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK---LV 1121 (1262)
Q Consensus 1045 pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~---lv 1121 (1262)
..++.|+.|+++| |.+++.........+... ..|+.+... ++-+.|++-+ ||.+.++++..-..... ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 3577899999888 999999433333333222 349999987 5555555554 59999999875211110 00
Q ss_pred eee-eeccCCCCcccccceeEE--EcCCCCEEEEEeCCCeEEEEeCCCC-----ceeeEeecCCCCCCeeEEEEEcCCCC
Q 000836 1122 TAF-SSIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIMLWDLEKE-----QQMVNPIPSSSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1122 sa~-~~l~~h~~~V~sv~l~v~--wsp~~~~Llsgg~Dg~IrIWDlrs~-----~~~v~ti~~hs~~~VtsLa~~s~~g~ 1193 (1262)
..- ...........++.+ .+ -...+...++....+.|.+|..... + ..+++..... +.++++. ++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~-~~ke~~lp~~--~~~i~~~---~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK-LLKEISLPDP--PSSIAFL---GN 149 (275)
T ss_pred ccccccccccccccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccc-eeEEEEcCCC--cEEEEEe---CC
Confidence 000 000001111111111 12 1133445555556668888876552 3 5666766644 7888444 67
Q ss_pred EEEEEECCCcEEEEECCCCC
Q 000836 1194 QLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1194 lLatGs~DGsVrIWDlrs~~ 1213 (1262)
.++.|..++ ..+.|+.++.
T Consensus 150 ~i~v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGS 168 (275)
T ss_pred EEEEEeCCc-eEEEecCCCC
Confidence 888887665 6678888654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.6 Score=50.13 Aligned_cols=100 Identities=11% Similarity=0.157 Sum_probs=60.0
Q ss_pred CCcEEEEECCC-----CcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEe-CCCeEEEEEcCCCCC----cceEEeeee
Q 000836 1056 NERIKIWNYEE-----DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKD----KQKLVTAFS 1125 (1262)
Q Consensus 1056 dg~I~VWD~~t-----g~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS-~DG~IrIWD~~~~~g----~~~lvsa~~ 1125 (1262)
++.|.|.|..+ .+.+..+.... ....+.++ +||+++++++ .+.+|.|.|+...+. +.+.- .
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK----sPHGV~vS--PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~---~ 365 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK----NPHGVNTS--PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR---D 365 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC----CccceEEC--CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc---c
Confidence 35688888887 35566665443 56678897 8998776655 589999999975211 00000 0
Q ss_pred eccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCC
Q 000836 1126 SIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEK 1166 (1262)
Q Consensus 1126 ~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs 1166 (1262)
.+. ....+--..+..+|..+|. .+++ --|..|-.||+..
T Consensus 366 ~vv-aevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVV-AEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEE-EeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 000 0001111113378888765 5554 6688999999886
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.73 E-value=7.7 Score=49.30 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=61.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeEeec-CCCCCCeeEEEEEc-CCCCEEEEEECCCcEEEEECCCC------C--cee
Q 000836 1147 SGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQ-VHGGQLAAGFVDGSVRLYDVRTP------D--MLV 1216 (1262)
Q Consensus 1147 ~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~-~hs~~~VtsLa~~s-~~g~lLatGs~DGsVrIWDlrs~------~--~~v 1216 (1262)
+..-++.++...+.|||.+.+. ...... ...+ .|..+.|.+ ++|+.+++-+-.+.|.+|-.... . ..+
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~-~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDD-PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCC-ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 3444444556779999999877 443332 2233 388885433 56776666666788888854211 1 122
Q ss_pred eeecCCCCCC-CCeEEEEEecCCCCCEEEEecCCceEEEec
Q 000836 1217 CSTRPHTQQV-ERVVGISFQPGLDPAKVNGTPKCLPSFSDL 1256 (1262)
Q Consensus 1217 ~~~~~~~gH~-~~V~slafsp~~~g~~LaSgSdd~I~~WDL 1256 (1262)
+.+ ....|+ .+|.+..|.++ | .|+.|+.+.+.+.|-
T Consensus 119 ~~i-~i~~~T~h~Igds~Wl~~--G-~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 119 RKI-DISSHTPHPIGDSIWLKD--G-TLVVGSGNQLFVFDK 155 (631)
T ss_pred EEE-EeecCCCCCccceeEecC--C-eEEEEeCCEEEEECC
Confidence 222 112233 57999999988 5 566666666666553
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.67 E-value=2 Score=54.37 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=101.0
Q ss_pred cHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhc
Q 000836 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1262)
Q Consensus 544 ~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1262)
+++=+++..+..|+ |+|.||=+=|...-...|..+..|+ +..+.=-. |++|++|.-++..+|.+.-
T Consensus 50 lF~dvvk~~~T~dl--elKKlvyLYl~nYa~~~P~~a~~av-----nt~~kD~~-------d~np~iR~lAlrtm~~l~v 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL--ELKKLVYLYLMNYAKGKPDLAILAV-----NTFLKDCE-------DPNPLIRALALRTMGCLRV 115 (734)
T ss_pred hhHHHHhhcccCCc--hHHHHHHHHHHHhhccCchHHHhhh-----hhhhccCC-------CCCHHHHHHHhhceeeEee
Confidence 34445555566676 9999998888777777777665544 33333233 8999999999988887765
Q ss_pred CchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccC
Q 000836 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1262)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1262)
+ .+-+.+..-+...++|..|.||+.+++....+-....+ ...+..+...|-.++.|
T Consensus 116 ~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-----------------~~~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 116 D-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-----------------LVEDSGLVDALKDLLSD 171 (734)
T ss_pred h-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-----------------hccccchhHHHHHHhcC
Confidence 5 34445566789999999999999999999888633221 11234455566667779
Q ss_pred CChhhHHHHHHHHHHHHHhh
Q 000836 704 GSPLVRAEVAVALARFAFGH 723 (1262)
Q Consensus 704 ~sp~VR~E~~~~ls~~~~~~ 723 (1262)
.+|+|-.-++-+++-+....
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESH 191 (734)
T ss_pred CCchHHHHHHHHHHHHHHhC
Confidence 99999988888888777554
|
|
| >cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) | Back alignment and domain information |
|---|
Probab=88.49 E-value=2.8 Score=47.17 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccccceeccCCCHHHHHHHHHHhcc-cC-CCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeccchHH
Q 000836 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRR-YA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISD 228 (1262)
Q Consensus 151 ~~l~~qy~~~~~~~~~~~~~dp~~~~~~~~~~~~r~-~~-~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t~y~p~~~~~ 228 (1262)
+.|..-++.+.- ......|++.+++++.+..+.+ +. ..+-++|-|-|||.- |.|+--|. .++++.+
T Consensus 35 ~~l~~~f~~lgF--~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~-----~~l~~~D~-----~~v~l~~ 102 (243)
T cd00032 35 ENLTKLFESLGY--EVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE-----GGIYGTDG-----DVVPIDE 102 (243)
T ss_pred HHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC-----CEEEEecC-----cEEEHHH
Confidence 344455544333 4567899999999999888874 33 445678889999963 77887774 4678888
Q ss_pred Hhhhc---------CCCeEEEEeCCchhh
Q 000836 229 LDSWL---------KTPSIYVFDCSAAGM 248 (1262)
Q Consensus 229 l~~~~---------~~p~~~v~Dc~~Ag~ 248 (1262)
|.+.+ |.|-|||+|..-...
T Consensus 103 i~~~f~~~~~~sl~~kPKl~~iqACRg~~ 131 (243)
T cd00032 103 ITSLFNGDNCPSLAGKPKLFFIQACRGDE 131 (243)
T ss_pred HHHhhccCCCccccCCCcEEEEECCCCCc
Confidence 87766 368899999876544
|
Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.12 E-value=47 Score=38.88 Aligned_cols=177 Identities=10% Similarity=0.106 Sum_probs=94.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeC--CCCCCCCeEEEEEeecCCCcEEEEEeC---------CCeEE
Q 000836 1039 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN--HDFPDKGISKLCLVNELDVSLLLVASC---------NGNIR 1107 (1262)
Q Consensus 1039 ~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~--h~~~~~~ItsL~fsn~~dg~lLaTgS~---------DG~Ir 1107 (1262)
.++..-..+..|+++. ..+.+++.+++..+..+.. ...+....+++... ++|.+.++... -..-+
T Consensus 69 ~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~--pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 69 SSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD--PDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred ccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEc--CCCCEEEeCCCccccCccccCCcce
Confidence 3443333444555543 3456677665554222211 11112445566664 67776665444 11124
Q ss_pred EEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeCCC--Cc----eeeEeecCCCCC
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEK--EQ----QMVNPIPSSSDC 1180 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDlrs--~~----~~v~ti~~hs~~ 1180 (1262)
+|.+.. .+... +.+.++...-++ ++|+|++..++.+ +..+.|.-|++.. .. .....+....+.
T Consensus 145 lyr~~p-~g~~~-----~l~~~~~~~~NG----la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~ 214 (307)
T COG3386 145 LYRVDP-DGGVV-----RLLDDDLTIPNG----LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGL 214 (307)
T ss_pred EEEEcC-CCCEE-----EeecCcEEecCc----eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCC
Confidence 555542 12211 223343334455 9999999999998 4457888887752 11 012222222222
Q ss_pred CeeEEEEEcCCCCEEEEEECCC-cEEEEECCCCCceeeeecCCCCCCCCeEEEEEec
Q 000836 1181 SISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236 (1262)
Q Consensus 1181 ~VtsLa~~s~~g~lLatGs~DG-sVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp 1236 (1262)
.-.+ +...+|++.+++..+| .|.+|+.. ++ +...+... ...+++++|--
T Consensus 215 -PDG~-~vDadG~lw~~a~~~g~~v~~~~pd-G~-l~~~i~lP---~~~~t~~~FgG 264 (307)
T COG3386 215 -PDGM-AVDADGNLWVAAVWGGGRVVRFNPD-GK-LLGEIKLP---VKRPTNPAFGG 264 (307)
T ss_pred -CCce-EEeCCCCEEEecccCCceEEEECCC-Cc-EEEEEECC---CCCCccceEeC
Confidence 3445 5567888886555554 99999998 55 34333222 25688888864
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.9 Score=51.82 Aligned_cols=148 Identities=9% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCC----------------
Q 000836 1046 FSPIVVAADENE-----RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG---------------- 1104 (1262)
Q Consensus 1046 dg~~Lasgs~dg-----~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG---------------- 1104 (1262)
+|+..+.||.++ .+.+||..+++= .....-..+..... +.. .++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~-~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYG-MCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCccccccc-EEE---ECCEEEEEeCCCccccccccccccccccc
Confidence 466667777553 478899886531 11111110001122 222 3677888887653
Q ss_pred -------eEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCC------CeEEEEeCCC-Cce-
Q 000836 1105 -------NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------SSIMLWDLEK-EQQ- 1169 (1262)
Q Consensus 1105 -------~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~D------g~IrIWDlrs-~~~- 1169 (1262)
.|..||..+ ++ |.............++ +.. ++...++||.+ ..|..||.++ .++
T Consensus 426 ~~~~~~~~ve~YDP~t--d~------W~~v~~m~~~r~~~~~-~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 426 EDTHSSNKVIRYDTVN--NI------WETLPNFWTGTIRPGV-VSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred ccccccceEEEECCCC--Ce------EeecCCCCcccccCcE-EEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 466677755 32 2222222111111111 222 23334445543 2467899987 552
Q ss_pred eeEeecCCCCCCeeEEEEEcCCCCEEEEEECCC--cEEEEECCCCC
Q 000836 1170 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG--SVRLYDVRTPD 1213 (1262)
Q Consensus 1170 ~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DG--sVrIWDlrs~~ 1213 (1262)
.+..++..... ...+ . .+|.+.++|+.|| +|..||..+.+
T Consensus 495 ~~~~m~~~r~~-~~~~-~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 495 LITTTESRLSA-LHTI-L--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EccccCccccc-ceeE-E--ECCEEEEEeeecceeehhhcCccccc
Confidence 34444443332 2222 2 2789999999888 78888888766
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.29 E-value=16 Score=46.76 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=124.7
Q ss_pred CcccchhHHHhccch--hHHHHHHHHHHHhcCCHHHHHHHHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhh
Q 000836 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 460 p~~lPiVLqvLlS~~--~rlral~lL~~fld~gpwAv~lals~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~ 537 (1262)
|.-+|=|-.+|+.+. -|.||++-+.||+-..|.-+.. +.+-+-++|-+...-+-.-.+-+...+|...+..-
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l- 214 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL- 214 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-
Confidence 456777888887754 3999999999999877755443 33445555543221111112333334444432211
Q ss_pred hhhccccHH---------------------------------HHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHH
Q 000836 538 DLVKDGGHA---------------------------------YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI 584 (1262)
Q Consensus 538 dl~k~~~~~---------------------------------yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~ 584 (1262)
+-+++ ... +++++|...|. +-.-.-+=+|++++.+-...+.+.-
T Consensus 215 ~~fr~-l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 215 SYFRD-LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHHH-HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhcccccccchh
Confidence 11111 222 23333322221 1111223355665554433322211
Q ss_pred hhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhh----------hHhhhccCch----HHHhhhhcCCCH
Q 000836 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA----------QTIGRRADAP----AIYVPLLSEPQP 650 (1262)
Q Consensus 585 ~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~----------~~~~~~~~~~----~~l~~ll~D~sP 650 (1262)
-++=-|+.-+.+. .+++.+|-.++-+||+|+.+.+.. +-+..+..+. ..++.+|+|+.+
T Consensus 292 --AILYE~V~TI~~I-----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~ 364 (866)
T KOG1062|consen 292 --AILYECVRTIMDI-----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV 364 (866)
T ss_pred --HHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH
Confidence 1111122223222 568899999999999999875433 2222333332 278899999999
Q ss_pred HHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHhh
Q 000836 651 EVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1262)
Q Consensus 651 eVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~ 723 (1262)
-+|+.++=.+-.++... +=..+...|+..+.-..+.+|.+++--+..++..|
T Consensus 365 SIkrralELs~~lvn~~---------------------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 365 SIKRRALELSYALVNES---------------------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHHHHHHhccc---------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 99999987777777321 01234456666666557778888877776666554
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=87.29 E-value=3.2 Score=39.98 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHH
Q 000836 611 LQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE 690 (1262)
Q Consensus 611 R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e 690 (1262)
|.-.+++|+....+.... ....-+.+...++..+.|..+.||-.++-+|.+++.... . +....=
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--------------~-~~l~~f 66 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--------------G-EILPYF 66 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--------------H-HHHHHH
Confidence 555667777776554443 223333444578899999999999999999999983210 0 111112
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000836 691 ISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1262)
Q Consensus 691 ~~~~~~ll~~~~D~sp~VR~E~~~~ls~~ 719 (1262)
..+...|..++.|..+.||.-+. .+.++
T Consensus 67 ~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 67 NEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred HHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 45677888999999999998874 34444
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.20 E-value=15 Score=47.67 Aligned_cols=145 Identities=17% Similarity=0.092 Sum_probs=89.8
Q ss_pred ccchhHHHhccchhHHHHHHHHHHHhcCCHHHHHHHHhcCC--hhhhhhhcCCCchhH-----HHHHHHHHHHHhcc-Ch
Q 000836 462 QLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGI--FPYVLKLLQTTTPEL-----RQILVFIWTKILAL-DK 533 (1262)
Q Consensus 462 ~lPiVLqvLlS~~~rlral~lL~~fld~gpwAv~lals~gi--fpyvlkLLqs~~~el-----r~~lvFIwa~il~~-d~ 533 (1262)
+|+-++.+|.||--+.-|+..+-.|.- -+|+-. -.- |--.+.+|+.|..|. ...+-+-+|++.|. --
T Consensus 735 iL~~ii~ll~Spllqg~al~~~l~~f~---alV~t~--~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~ 809 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLLQGGALSALLLFFQ---ALVITK--EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTC 809 (1233)
T ss_pred hHHHHHHHhhCccccchHHHHHHHHHH---HHHhcC--CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHH
Confidence 667788889998877777775555550 222222 122 333457777765443 22334444444443 12
Q ss_pred hhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHH
Q 000836 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1262)
Q Consensus 534 ~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w 613 (1262)
.||. ........++.-+.++......|-.|-+.|+.+-++.+..- ..++...+++.++ +|+.+|+.+
T Consensus 810 ~~~~--~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~-------sp~edvksA 876 (1233)
T KOG1824|consen 810 ACPQ--KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFN-------SPSEDVKSA 876 (1233)
T ss_pred hccc--cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcC-------CChHHHHHH
Confidence 2331 01123344555555555556778899999999887766543 3466678888898 899999999
Q ss_pred HHHHHHhhhcC
Q 000836 614 LCLCLGKLWED 624 (1262)
Q Consensus 614 ~~l~Lg~l~~~ 624 (1262)
+.++||.+--|
T Consensus 877 As~ALGsl~vg 887 (1233)
T KOG1824|consen 877 ASYALGSLAVG 887 (1233)
T ss_pred HHHHhhhhhcC
Confidence 99999998875
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=87.09 E-value=5.4 Score=49.85 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=69.2
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchh
Q 000836 548 FIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 627 (1262)
Q Consensus 548 f~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~ 627 (1262)
|..+|.-.-..+..|.+||=.++.+++.||. +...+++..+.+.+ |.+..||.+++-.|-.|+.++++
T Consensus 25 y~~il~~~kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcE-------Ded~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 25 YKEILDGVKGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCE-------DEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--------SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHh-------cccHHHHHHHHHhHHHHHHhHHH
Confidence 4444433223478899999999999999999 55567788889998 88999999999999999998644
Q ss_pred hhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 628 AQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 628 ~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
--. .+...|..||....|..+.++=-+|-+++
T Consensus 93 ~v~-----kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 HVS-----KVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp -HH-----HHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHh-----HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221 23447888998888888888877777776
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.83 E-value=24 Score=47.09 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChH
Q 000836 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684 (1262)
Q Consensus 605 ~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~ 684 (1262)
-.++.++...+++++.+..++...-.-..=....+.+...|...+|+||++||=++..+|..-...+
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~------------- 862 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC------------- 862 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH-------------
Confidence 4578888888999999997754433333334445577778899999999999999999995432111
Q ss_pred HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHhhhhhHHHHhhh
Q 000836 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733 (1262)
Q Consensus 685 ~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~~f~~~a~~ 733 (1262)
...-+..+...++.+..|..--+|+.+.-.+-+++..|.-..+..-++
T Consensus 863 -l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 863 -LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred -HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 122345677888999999999999999999999998877666655443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.52 E-value=14 Score=41.46 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=75.6
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeE
Q 000836 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1172 (1262)
Q Consensus 1093 dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ 1172 (1262)
...+++.||..|.+.--|.++ |+.. |++.-+- .+.+..++ -|+.++.|...|.+.+.+..++. .+.
T Consensus 22 skT~v~igSHs~~~~avd~~s--G~~~----We~ilg~--RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs-~~w 87 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQS--GNLI----WEAILGV--RIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGS-QIW 87 (354)
T ss_pred CceEEEEecCCceEEEecCCC--CcEE----eehhhCc--eeeeeeEE-----ECCEEEEEEccCcEEEEEecchh-hee
Confidence 456788888888888888876 4432 4444322 23332332 26789999999999999999997 677
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q 000836 1173 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1173 ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrIWDlrs~~ 1213 (1262)
.+..-.. |.+-+...+++.++..|+.|+..+.-|.++..
T Consensus 88 ~f~~~~~--vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 88 NFVILET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeeehhh--hccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 6665433 33333467789999999999999999999876
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=86.34 E-value=9.8 Score=43.44 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhhcCC-----------------CC-CCCCcccchhHHHhccchhHHHHHHHHHHHhcC------CHH-H
Q 000836 439 FSEQLTAFEVWLDHGS-----------------EH-KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDM------GPW-A 493 (1262)
Q Consensus 439 f~~qLtafe~wL~~g~-----------------~~-~~pp~~lPiVLqvLlS~~~rlral~lL~~fld~------gpw-A 493 (1262)
|.++|..++.+|+--. |+ .+.+|.-|.|+|-|.|..-.-.++.+|.|+..+ |+- .
T Consensus 24 F~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~ 103 (262)
T PF14225_consen 24 FLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQS 103 (262)
T ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCc
Confidence 5666777776665421 43 567788899999999999999999999988764 111 2
Q ss_pred HHHHHhcCChhhhhhhcCCCc-----hhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHH
Q 000836 494 VDLALSVGIFPYVLKLLQTTT-----PELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFV 568 (1262)
Q Consensus 494 v~lals~gifpyvlkLLqs~~-----~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafi 568 (1262)
+.+-.=.+.+||++.-+.++. ++.+.. +=.+|.++... .+ ++.-..+..|-... . -....|..=+
T Consensus 104 rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~-A~~La~~a~~~-~~------~~La~il~~ya~~~-f-r~~~dfl~~v 173 (262)
T PF14225_consen 104 RLLFLLLALLPRLLHAFDDPNPIQPDQECIEI-AEALAQVAEAQ-GL------PNLARILSSYAKGR-F-RDKDDFLSQV 173 (262)
T ss_pred cHHHHHHHHHHHHHHHhcccccccccHHHHHH-HHHHHHHHHhC-CC------ccHHHHHHHHHhcC-C-CCHHHHHHHH
Confidence 333334566899998888766 344433 34444554221 11 12223333333211 1 2335677777
Q ss_pred HHHHhcCC-hhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchh
Q 000836 569 LAVIVDGH-RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 627 (1262)
Q Consensus 569 Ls~l~~~~-~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~ 627 (1262)
.+.|++.| |. +...++..++++|. ...+.+|.-.+-.|..++..-+.
T Consensus 174 ~~~l~~~f~P~-----~~~~~l~~Ll~lL~-------n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 174 VSYLREAFFPD-----HEFQILTFLLGLLE-------NGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred HHHHHHHhCch-----hHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHhccccC
Confidence 78888876 55 45577788889998 66788999999988888876443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=86.03 E-value=21 Score=44.45 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=89.3
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeeCCCCC--CCCeE-EEEEeecCCCcEEEEEe---------CCCeEEEEEcCCCC
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSFDNHDFP--DKGIS-KLCLVNELDVSLLLVAS---------CNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1048 ~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~--~~~It-sL~fsn~~dg~lLaTgS---------~DG~IrIWD~~~~~ 1115 (1262)
..++.++.++.|.-+|.++|+.+.++...... +..+. +..+. +.+++.++ .+|.|.-+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~----~~~v~vg~~~~~~~~~~~~g~v~alD~~T-- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV----KKLVIIGSSGAEFFACGVRGALRAYDVET-- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE----CCEEEEeccccccccCCCCcEEEEEECCC--
Confidence 67888888999999999999999887654310 00011 12221 24455554 367888888876
Q ss_pred CcceEEeeeeeccCCC-------------------CcccccceeEEEcCCCCEEEEEeCCC------------------e
Q 000836 1116 DKQKLVTAFSSIQGHK-------------------PGVRCSNVVVDWQQQSGYLYASGEVS------------------S 1158 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~-------------------~~V~sv~l~v~wsp~~~~Llsgg~Dg------------------~ 1158 (1262)
++.. |+.-.... ..+.+ .....+.++.+++++.++ .
T Consensus 185 G~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~---~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 185 GKLL----WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA---SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred Ccee----eEeeccCCCcCCCCCCCCCcceecCCCCCccC---CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 4432 22111100 11111 123344567888886554 7
Q ss_pred EEEEeCCCCceeeEeecCCCCC----------CeeEEEEEcCCCC---EEEEEECCCcEEEEECCCCCc
Q 000836 1159 IMLWDLEKEQQMVNPIPSSSDC----------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDM 1214 (1262)
Q Consensus 1159 IrIWDlrs~~~~v~ti~~hs~~----------~VtsLa~~s~~g~---lLatGs~DGsVrIWDlrs~~~ 1214 (1262)
|.-.|+.+++ .+-.+...... .+..+ ...+|. ++++|+.+|.+...|.++++.
T Consensus 258 l~Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~--~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 258 IVALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADI--KPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EEEEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEec--cccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 8999999998 77665432110 01111 012333 678888999999999998873
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=2.3 Score=46.77 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCcc-eEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1092 ~dg~lLaTgS~DG~IrIWD~~~~~g~~-~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~ 1170 (1262)
..+..+++|+.+|.|.+|.... .+.. .++ ..+....... +.--.++....+++.+|.||.|++.-.+ .
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~-~g~~~d~~-----~s~~e~i~~~----Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~ 136 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNL-EGAHSDRV-----CSGEESIDLG----IPNGRDSSLGCVGAQDGRIRACNIKPNK-V 136 (238)
T ss_pred ccCceEEeecccceEEEecCCc-cchHHHhh-----hcccccceec----cccccccceeEEeccCCceeeeccccCc-e
Confidence 3457899999999999999864 1111 100 0111111111 2223455677888999999999999888 5
Q ss_pred eEeecCCCCCCeeEEEEEcCCCCEEEEE--ECCCcEEEEECCC
Q 000836 1171 VNPIPSSSDCSISALTASQVHGGQLAAG--FVDGSVRLYDVRT 1211 (1262)
Q Consensus 1171 v~ti~~hs~~~VtsLa~~s~~g~lLatG--s~DGsVrIWDlrs 1211 (1262)
+...-.|....+... .....+..++.. +.|..++.|++..
T Consensus 137 ~g~~g~h~~~~~e~~-ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 137 LGYVGQHNFESGEEL-IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeeccccCCCccee-EEecCCceEEeeccccchhhhhcchhh
Confidence 555544442223333 233344555555 5666666666643
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.91 E-value=14 Score=44.88 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred hhhhhccccHHHHHHhhc--CCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHH
Q 000836 536 QVDLVKDGGHAYFIRFLD--SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1262)
Q Consensus 536 Q~dl~k~~~~~yf~~~L~--~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w 613 (1262)
+..+-|.+....++.+|. ..+...-.|.|||=+|+-...+.|.... -....+++.++.-|-| +-+-+|.-=
T Consensus 247 ~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D------~~~~~V~le 319 (533)
T KOG2032|consen 247 PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYD------DLNEEVQLE 319 (533)
T ss_pred cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhc------CCccHHHHH
Confidence 334445555666665553 2333357899999999998888665433 3444555555555553 445678888
Q ss_pred HHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
++.||....+.-..=.-..+-..+...+-.+..|..+.+|+++.+++|.+.
T Consensus 320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALA 370 (533)
T ss_pred HHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 888888887652211112333344457788999999999999999999987
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.59 E-value=15 Score=44.95 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCcEEE--EeeCCCCCCCCeEEEEEeecCCCcEE-EEEeCCCeEEEE
Q 000836 1037 GTKTALLQPFSPIVVAA---DEN-ERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIW 1109 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lasg---s~d-g~I~VWD~~tg~~l~--~~~~h~~~~~~ItsL~fsn~~dg~lL-aTgS~DG~IrIW 1109 (1262)
.+..-+|+|++..++-. ... ..|.++|+.+++... .+.+++ ..-.|+ +||+.| ++...||...||
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~------~~P~fs--pDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN------GAPAFS--PDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc------CCccCC--CCCCEEEEEECCCCCccEE
Confidence 35556788888765543 222 469999999875433 344333 245787 677655 566678877666
Q ss_pred EcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeC-CCe--EEEEeCCCCceeeEeecCCCCCCeeEEE
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSS--IMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~-Dg~--IrIWDlrs~~~~v~ti~~hs~~~VtsLa 1186 (1262)
=.....+.. ..+....+.-.. -.|+|+|..++-.++ .|. |.+.|.+... . ..+........ . -
T Consensus 266 ~~dl~~~~~------~~Lt~~~gi~~~----Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~-~riT~~~~~~~-~-p 331 (425)
T COG0823 266 LMDLDGKNL------PRLTNGFGINTS----PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-V-TRLTFSGGGNS-N-P 331 (425)
T ss_pred EEcCCCCcc------eecccCCccccC----ccCCCCCCEEEEEeCCCCCcceEEECCCCCc-e-eEeeccCCCCc-C-c
Confidence 554311221 112222222223 678999998877754 444 5566666665 2 33333322212 2 2
Q ss_pred EEcCCCCEEEEEECC-Cc--EEEEECCCCC
Q 000836 1187 ASQVHGGQLAAGFVD-GS--VRLYDVRTPD 1213 (1262)
Q Consensus 1187 ~~s~~g~lLatGs~D-Gs--VrIWDlrs~~ 1213 (1262)
.++++|..++..+.. |. |.+.|+.++.
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 578999988877643 44 6666776555
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.4 Score=56.15 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=89.0
Q ss_pred CCeEEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcc--eEEeeeeeccCCCCcccccceeEEEcC---CCCEEEEEeC
Q 000836 1081 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ--KLVTAFSSIQGHKPGVRCSNVVVDWQQ---QSGYLYASGE 1155 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~--~lvsa~~~l~~h~~~V~sv~l~v~wsp---~~~~Llsgg~ 1155 (1262)
+.|-++.|- ..+...+. -.-|.+.|||+..-.|+. +++ ..........+. + |.|.| ...++..+-+
T Consensus 133 G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~--v~~~~p~gs~~~---~-V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 133 GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLE--VTPITPYGSDPQ---L-VSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceE--EeecCcCCCCcc---e-eeecccccccceeeeccC
Confidence 566778885 23333333 334788999987544432 222 112222222222 2 66655 3345555556
Q ss_pred CCeEEEEeCCCCceeeEeecCCCCCCeeE----------EEEEcCCCCEEEEEECCCcEEEEECCCCC----ceeeeecC
Q 000836 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISA----------LTASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRP 1221 (1262)
Q Consensus 1156 Dg~IrIWDlrs~~~~v~ti~~hs~~~Vts----------La~~s~~g~lLatGs~DGsVrIWDlrs~~----~~v~~~~~ 1221 (1262)
++.|++....+.. ...|.+|+.. ++. ++..+++|..|++.+.||.|+.|.+.-.. .+...|+.
T Consensus 204 ~~~i~lL~~~ra~--~~l~rsHs~~-~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 204 GGEIRLLNINRAL--RSLFRSHSQR-VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred CCceeEeeechHH--HHHHHhcCCC-cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 7888887766654 2344555543 333 34568999999999999999999764322 23444544
Q ss_pred CCCCCCCeEEEEEecCC------C-CCEEEEecC-C-ceEEEe
Q 000836 1222 HTQQVERVVGISFQPGL------D-PAKVNGTPK-C-LPSFSD 1255 (1262)
Q Consensus 1222 ~~gH~~~V~slafsp~~------~-g~~LaSgSd-d-~I~~WD 1255 (1262)
+.+ .+-.|..|+.+. + -.+++++++ + .++||.
T Consensus 281 hd~--~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 281 HDK--HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCC--CCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 443 333333344331 0 124566664 3 788885
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.85 Score=53.97 Aligned_cols=73 Identities=22% Similarity=0.428 Sum_probs=66.8
Q ss_pred hchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 586 ~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
-.++.+++++|+. ..+|.+-+-+|.=+|+++.-+++++.+..+-++-+.+..|++++.|+||..|+.|+-+++
T Consensus 365 yellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 365 YELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 3677889999984 456999999999999999999999999999999999999999999999999999998887
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.41 E-value=1.2 Score=58.53 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=65.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChH
Q 000836 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684 (1262)
Q Consensus 605 ~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~ 684 (1262)
..+|++++++-+|||+|+--..+ --+...+..+..+=+.|+|.||+=+|+++|-|.=.....
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl-------------- 995 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL-------------- 995 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc--------------
Confidence 45699999999999999864211 111222222333445999999999999999887221110
Q ss_pred HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q 000836 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 685 ~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
+| .....|...+.|.+++||+-++..+++++..
T Consensus 996 ----ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 996 ----IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred ----cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 01 0113577788999999999999999998854
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.14 E-value=5.1 Score=52.64 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCcE-----EEEeeCCC---CCCCCeEEEEEeecCCCcEEEEEeCCCeE
Q 000836 1037 GTKTALLQPFSPIVVA--ADENERIKIWNYEEDTL-----LNSFDNHD---FPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Las--gs~dg~I~VWD~~tg~~-----l~~~~~h~---~~~~~ItsL~fsn~~dg~lLaTgS~DG~I 1106 (1262)
.+..+...+|+...++ .+.+..|.+||+++-.. ..-+.+|. ....-..++.|. +.-....++...|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wn-P~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWN-PLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhcccccccccccc-CCccchhhhhccccch
Confidence 3444455556654444 33344788899875211 11122221 112345678884 4445567888899999
Q ss_pred EEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecC---CCCCCee
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSIS 1183 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~---hs~~~Vt 1183 (1262)
+|..+...... + ....+.....+++|++.|.++++|-..|++.-|-..-+ ....+++ .....|.
T Consensus 181 ~V~~~~~~~~~---v--------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQN---V--------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVL 247 (1405)
T ss_pred hhhhhhhhhhh---h--------cccCcccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCcCCCccee
Confidence 99888651111 1 11122223344999999999999999999888865433 2333332 2223489
Q ss_pred EEEEEcC
Q 000836 1184 ALTASQV 1190 (1262)
Q Consensus 1184 sLa~~s~ 1190 (1262)
+|+|...
T Consensus 248 ~v~Wl~t 254 (1405)
T KOG3630|consen 248 SVTWLST 254 (1405)
T ss_pred EEEEecc
Confidence 9955543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.02 E-value=6 Score=49.40 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChH
Q 000836 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684 (1262)
Q Consensus 605 ~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~ 684 (1262)
..+..+++++|+|+-.+=-.-..-+.---+..+.+.|.++|.||.-.|-.+++=+|-++|-+.. ..
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs--------------~~ 453 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS--------------NL 453 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc--------------cH
Confidence 3467899999999875432211111112233456689999999999999999999999995542 12
Q ss_pred HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHhhhhhHHH
Q 000836 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKS 729 (1262)
Q Consensus 685 ~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~~f~~ 729 (1262)
....++-+.+..+..+..|+.+-+|+-.+|+|-+++..-...+..
T Consensus 454 kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 454 KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence 234567777888999999999999999999999888664444443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.88 E-value=5.3 Score=50.74 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccc
Q 000836 606 TEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1262)
Q Consensus 606 ~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~ 665 (1262)
.+..||+.+.-||++|-.+ ...+...+...+-..+.|..-|||-.|-++|..+-+
T Consensus 478 En~ivRaaAv~alaKfg~~-----~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQ-----DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhHHHHHHHHHHHhcC-----CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 3678999999999999833 235667777788899999999999999999998874
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.67 E-value=31 Score=39.39 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=44.8
Q ss_pred EEcCCCCEEEEEe-----CCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCeEEEE
Q 000836 1042 LLQPFSPIVVAAD-----ENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1042 ~fspdg~~Lasgs-----~dg~I~VWD~~tg-~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~IrIW 1109 (1262)
.|||+|.+|...- ..|.|-|||...+ +.+..|..|. -.-..+.|. .||..++.+ +|-|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G---iGpHev~lm--~DGrtlvva--nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG---IGPHEVTLM--ADGRTLVVA--NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC---cCcceeEEe--cCCcEEEEe--CCceecc
Confidence 4899999988743 2478999999865 5666777776 556678887 899988876 3445544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.14 E-value=38 Score=43.38 Aligned_cols=226 Identities=15% Similarity=0.179 Sum_probs=135.6
Q ss_pred hHHHhccchhHHH--HHHHHHHHhcCCHHHHHHH--HhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccChh-----hh
Q 000836 466 VLQVLLSQCHRFR--ALVLLGRFLDMGPWAVDLA--LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS-----CQ 536 (1262)
Q Consensus 466 VLqvLlS~~~rlr--al~lL~~fld~gpwAv~la--ls~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~-----~Q 536 (1262)
|--.=+|+..+++ |+.=|.|.+.+- =..|. ..-.+|+.-++-..|..+|++-+.+=-|+.||.-.-- ++
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~Ly--Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMSLY--YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666544 455555554220 00010 1123455555555578889999999999999975321 11
Q ss_pred ---hhhh------c----cccHHHHHHhhc--CCCCc----HHHHH--HHHHHHHHHhcCChhhhHHHHhhchHHHHHHh
Q 000836 537 ---VDLV------K----DGGHAYFIRFLD--SMEAY----PEQRA--MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH 595 (1262)
Q Consensus 537 ---~dl~------k----~~~~~yf~~~L~--~~~~~----~e~ra--~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~ 595 (1262)
..+- - ....+.++..|. +++.+ .-+++ -|--++++.|.|.-. .-++...=+.
T Consensus 300 ~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-------~~Vl~Fiee~ 372 (859)
T KOG1241|consen 300 AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-------PHVLPFIEEN 372 (859)
T ss_pred HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-------hhhHHHHHHh
Confidence 1111 0 011233333332 11110 11222 222233333332211 1344445556
Q ss_pred hcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCC
Q 000836 596 LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGV 675 (1262)
Q Consensus 596 L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~ 675 (1262)
++ .|++.-|.++..++|...++.+..+...+-.++...+..+..|++--||..+.|.||++...-.+..+
T Consensus 373 i~-------~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~--- 442 (859)
T KOG1241|consen 373 IQ-------NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII--- 442 (859)
T ss_pred cC-------CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc---
Confidence 77 88999999999999999999999999988888888999999999999999999999999843221111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHH
Q 000836 676 EGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 676 ~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~ 721 (1262)
. ...+..+...++..++| .|.|-.-..|++--++.
T Consensus 443 -------n---~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 443 -------N---QELLQSKLSALLEGLND-EPRVASNVCWAFISLAE 477 (859)
T ss_pred -------c---HhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHH
Confidence 1 12345666677777766 58888888888765553
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=84.13 E-value=3.6 Score=40.07 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHH
Q 000836 517 LRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI 584 (1262)
Q Consensus 517 lr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~ 584 (1262)
+|.-+|=++|..+...+..|..+..-+|+..+++.-.-.+..|-.|.||.|++=.+|+++++.|...-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46668889999999999999777777888887776654455599999999999999999999998643
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=83.86 E-value=29 Score=43.34 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=89.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeeCCCC--CC-CCe--EEEEEeecCCCcEEEEEeCCCeEEEEEcCCCCCcceEE
Q 000836 1047 SPIVVAADENERIKIWNYEEDTLLNSFDNHDF--PD-KGI--SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1262)
Q Consensus 1047 g~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~--~~-~~I--tsL~fsn~~dg~lLaTgS~DG~IrIWD~~~~~g~~~lv 1121 (1262)
+..+++++.++.|.-.|..+|+.+.++..... .. ..+ ..+.. .++..++.++.+|.|.-+|..+ ++..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~T--G~~~-- 133 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAET--GKQV-- 133 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCC--CCEe--
Confidence 45677777789999999999998887755431 00 001 01122 1236788888999999999977 5432
Q ss_pred eeeeecc-CCC---CcccccceeEEEcCCCCEEEEEe---------CCCeEEEEeCCCCceeeEeecCCCC---------
Q 000836 1122 TAFSSIQ-GHK---PGVRCSNVVVDWQQQSGYLYASG---------EVSSIMLWDLEKEQQMVNPIPSSSD--------- 1179 (1262)
Q Consensus 1122 sa~~~l~-~h~---~~V~sv~l~v~wsp~~~~Llsgg---------~Dg~IrIWDlrs~~~~v~ti~~hs~--------- 1179 (1262)
|+.-. .+. ..+.+... . .++.+++++ .++.+...|..+++ .+-.+.....
T Consensus 134 --W~~~~~~~~~~~~~i~ssP~---v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 134 --WKFGNNDQVPPGYTMTGAPT---I--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred --eeecCCCCcCcceEecCCCE---E--ECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCC
Confidence 33211 110 01222111 1 135666653 36788999999988 6666544211
Q ss_pred ----------CCeeEEEEEcCCCCEEEEEECCC------------------cEEEEECCCCCc
Q 000836 1180 ----------CSISALTASQVHGGQLAAGFVDG------------------SVRLYDVRTPDM 1214 (1262)
Q Consensus 1180 ----------~~VtsLa~~s~~g~lLatGs~DG------------------sVrIWDlrs~~~ 1214 (1262)
..+.+--...+.+..++.++.|+ .|.-+|..+++.
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 00111113334456777787665 688889988883
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.36 E-value=1.8 Score=51.24 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=102.4
Q ss_pred cccchhHHHhccchhH--HHHHH-HHHHHhcCCH------HHHHHHHhcCChhhhhhhcCC---CchhHHHHHHHHHHHH
Q 000836 461 EQLPIVLQVLLSQCHR--FRALV-LLGRFLDMGP------WAVDLALSVGIFPYVLKLLQT---TTPELRQILVFIWTKI 528 (1262)
Q Consensus 461 ~~lPiVLqvLlS~~~r--lral~-lL~~fld~gp------wAv~lals~gifpyvlkLLqs---~~~elr~~lvFIwa~i 528 (1262)
..+|.+.+++..-.-+ .|-++ ++.++||.|| -+....+..+ .|.-+++|+. ..+|+..=+.||-.+.
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3455566655443322 22222 5668999996 2322333333 4444555542 3467777677776554
Q ss_pred hcc-------Ch------hh----------------hhhhhccccH---HHHHHhhcCCCCcHHHHHHHHHHHHHHhcCC
Q 000836 529 LAL-------DK------SC----------------QVDLVKDGGH---AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1262)
Q Consensus 529 l~~-------d~------~~----------------Q~dl~k~~~~---~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~ 576 (1262)
-.. |. +| =.++++++-| +.++.+|+.++- |.--+.||+=++.+++.|
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND-PIILCVACHDIGEYVRHY 398 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhC
Confidence 221 10 01 0233333333 566777776553 566889999999999999
Q ss_pred hhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcC
Q 000836 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1262)
Q Consensus 577 ~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1262)
|+|+.+..+-|.=+++.++|+ +++|+||-=+++|+-+++..
T Consensus 399 P~gk~vv~k~ggKe~vM~Lln-------h~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLN-------HEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred chHhHHHHHhchHHHHHHHhc-------CCCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999999988765
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=83.28 E-value=23 Score=41.40 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=110.6
Q ss_pred HHHHHhcCCHHHHHHHHh------cCChhhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCC
Q 000836 482 LLGRFLDMGPWAVDLALS------VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSM 555 (1262)
Q Consensus 482 lL~~fld~gpwAv~lals------~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~ 555 (1262)
+++..+.-+|-.+.+.++ ...|..++++|+.+..-....++||++++++..+....... ....++|+++|.+.
T Consensus 80 li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~ 158 (312)
T PF03224_consen 80 LIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQ 158 (312)
T ss_dssp HHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-T
T ss_pred HHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHh
Confidence 777778788744444433 23688889999988777788899999999998765543322 34557777777652
Q ss_pred CCc--HHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhh
Q 000836 556 EAY--PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGR 633 (1262)
Q Consensus 556 ~~~--~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~ 633 (1262)
... .+...+|+-+|+.+. ..+.-+...++.+.+..+...|...........+.+.-.+++|+=.|=-+.+.++.+.
T Consensus 159 l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~- 236 (312)
T PF03224_consen 159 LSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN- 236 (312)
T ss_dssp T-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH-
T ss_pred hcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh-
Confidence 221 355689999999987 4555566778899999999999311111225567888888888877766655555543
Q ss_pred ccCchHHHhhhhcCCCHH-HHHHHHHHHhhcccc
Q 000836 634 RADAPAIYVPLLSEPQPE-VRASAVFSLGTLLDI 666 (1262)
Q Consensus 634 ~~~~~~~l~~ll~D~sPe-VRaa~v~als~~v~~ 666 (1262)
..++...+..++++...| |=+-++..|-+++..
T Consensus 237 ~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 237 KKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred ccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 333555677777655433 444556666777744
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.22 E-value=2.9 Score=55.03 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHHhhchHH----HHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhc
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIH----VCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRR 634 (1262)
Q Consensus 559 ~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~----~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~ 634 (1262)
|++++-|-++|+.|+ |+...++. .+...++. .|+|.+|.=+.++||-|--.++. +-
T Consensus 937 p~Lq~AAtLaL~klM---------~iSa~fces~l~llftimek------sp~p~IRsN~VvalgDlav~fpn-----li 996 (1251)
T KOG0414|consen 937 PELQAAATLALGKLM---------CISAEFCESHLPLLFTIMEK------SPSPRIRSNLVVALGDLAVRFPN-----LI 996 (1251)
T ss_pred HHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHhc------CCCceeeecchheccchhhhccc-----cc
Confidence 678888888887765 66666554 34444554 78999999999999977655443 33
Q ss_pred cCchHHHhhhhcCCCHHHHHHHHHHHhhcccc
Q 000836 635 ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 635 ~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~ 666 (1262)
+-..+.|+..|.|.+|+||+-|+..|+++|-+
T Consensus 997 e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 997 EPWTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 34455899999999999999999999999943
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.21 E-value=10 Score=51.53 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHH
Q 000836 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAI 640 (1262)
Q Consensus 561 ~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~ 640 (1262)
--.|..+.|++-. +..| .-...+..++..|. .+.+-||+=|+-||+.+.+..+.. -.+..++..
T Consensus 796 ~a~li~~~la~~r---~f~~---sfD~yLk~Il~~l~-------e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~ 859 (1692)
T KOG1020|consen 796 DAKLIVFYLAHAR---SFSQ---SFDPYLKLILSVLG-------ENAIALRTKALKCLSMIVEADPSV---LSRPDVQEA 859 (1692)
T ss_pred hHHHHHHHHHhhh---HHHH---hhHHHHHHHHHHhc-------CchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHH
Confidence 3446666666522 1111 23355666777777 789999999999999999876553 344455556
Q ss_pred HhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000836 641 YVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 641 l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~ 720 (1262)
+-.-+.|.+.-||-|||=.+|+||-... +. . ...-..+.+-..|.+..|||.++..+.-+-
T Consensus 860 Vh~R~~DssasVREAaldLvGrfvl~~~--------------e~--~---~qyY~~i~erIlDtgvsVRKRvIKIlrdic 920 (1692)
T KOG1020|consen 860 VHGRLNDSSASVREAALDLVGRFVLSIP--------------EL--I---FQYYDQIIERILDTGVSVRKRVIKILRDIC 920 (1692)
T ss_pred HHHhhccchhHHHHHHHHHHhhhhhccH--------------HH--H---HHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 6677889999999999999999993321 10 0 111234556677999999999999988777
Q ss_pred Hhhh--hhHHHHhhh
Q 000836 721 FGHK--QHLKSIAAA 733 (1262)
Q Consensus 721 ~~~~--~~f~~~a~~ 733 (1262)
..+. ..+..++..
T Consensus 921 ~e~pdf~~i~~~cak 935 (1692)
T KOG1020|consen 921 EETPDFSKIVDMCAK 935 (1692)
T ss_pred HhCCChhhHHHHHHH
Confidence 6665 334444433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.09 E-value=63 Score=38.39 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCC-------C------C-CCCeEEEEEeecCCCcEEEEEe
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD-------F------P-DKGISKLCLVNELDVSLLLVAS 1101 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~-------~------~-~~~ItsL~fsn~~dg~lLaTgS 1101 (1262)
..+....|+|+|+.+|-.. ++.|.+++..++...+--.... + + -+.-..+-|+ +|++.|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS--pd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS--PDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEEC--CCCCEEEEEE
Confidence 4577889999999999887 7899999988774332111110 0 0 0123467897 8888877654
Q ss_pred -CCCeEEEEEc
Q 000836 1102 -CNGNIRIWKD 1111 (1262)
Q Consensus 1102 -~DG~IrIWD~ 1111 (1262)
++..|+.+.+
T Consensus 120 ~d~~~v~~~~~ 130 (353)
T PF00930_consen 120 FDEREVPEYPL 130 (353)
T ss_dssp EE-TTS-EEEE
T ss_pred ECCcCCceEEe
Confidence 3455554443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.82 E-value=8.8 Score=47.25 Aligned_cols=132 Identities=16% Similarity=0.062 Sum_probs=83.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhcc
Q 000836 556 EAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 635 (1262)
Q Consensus 556 ~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~ 635 (1262)
.+++..-...+-.+.+...+.|+|.. +=.+.+..++.-+. .++--||.-+|=.|+.+...-.+... .+-.
T Consensus 62 si~dRil~fl~~f~~Y~~~~dpeg~~--~V~~~~~h~lRg~e-------skdk~VR~r~lqila~~~d~v~eIDe-~l~N 131 (885)
T COG5218 62 SIPDRILSFLKRFFEYDMPDDPEGEE--LVAGTFYHLLRGTE-------SKDKKVRKRSLQILALLSDVVREIDE-VLAN 131 (885)
T ss_pred CcHHHHHHHHHHHHHhcCCCChhhhH--HHHHHHHHHHhccc-------CcchhHHHHHHHHHHHHHHhcchHHH-HHHH
Confidence 33333333333334466777888733 33455566666666 77888999999999888776443222 2233
Q ss_pred CchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCCCCCCCCCCCChHHHHHHHHHHHHHHHhh-ccCCChhhHHHHHH
Q 000836 636 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTV-VSDGSPLVRAEVAV 714 (1262)
Q Consensus 636 ~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~-~~D~sp~VR~E~~~ 714 (1262)
+..++|..-+-|.-|.||.+||++|+.|-+-. +. .|..++..|+.. -+|+|..||+-+..
T Consensus 132 ~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~------------~n-------een~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 132 GLLEKLSERLFDREKAVRREAVKVLCYYQEME------------LN-------EENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc------------CC-------hHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44567888888999999999999999996221 11 122333444443 47999999987765
Q ss_pred HH
Q 000836 715 AL 716 (1262)
Q Consensus 715 ~l 716 (1262)
-+
T Consensus 193 ni 194 (885)
T COG5218 193 NI 194 (885)
T ss_pred He
Confidence 54
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.66 E-value=13 Score=41.51 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHH-HHhcCChhhhhhhcCCCchhHHHHHHHHHHHHhccCh
Q 000836 476 RFRALVLLGRFLDMGPWAVDL-ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 533 (1262)
Q Consensus 476 rlral~lL~~fld~gpwAv~l-als~gifpyvlkLLqs~~~elr~~lvFIwa~il~~d~ 533 (1262)
|+-+|-+++-.+-.|---|+- .+..+|.|..+|.+...+++-|-++.||+-||+.+|-
T Consensus 142 RLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~ 200 (293)
T KOG3036|consen 142 RLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDV 200 (293)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccc
Confidence 677777777777666533444 3588999999999999888889999999999999874
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.59 E-value=87 Score=41.39 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=103.4
Q ss_pred cEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEeecCCCcEEEEEeC----------CCeEEEEEcCCCCCcceEEeeeee
Q 000836 1058 RIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASC----------NGNIRIWKDYDQKDKQKLVTAFSS 1126 (1262)
Q Consensus 1058 ~I~VWD~~tg~~l~~~~~h~~~-~~~ItsL~fsn~~dg~lLaTgS~----------DG~IrIWD~~~~~g~~~lvsa~~~ 1126 (1262)
.++|+|-++-+.++..+....+ .-.|.+..|.+.+ +.++++|.. .|.|.||.... .++.+++....
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~- 827 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDP-NTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV- 827 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-
Confidence 4778887776665544433211 1245556686322 677777742 46777777654 34444441110
Q ss_pred ccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCCcEEE
Q 000836 1127 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1206 (1262)
Q Consensus 1127 l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DGsVrI 1206 (1262)
-.+.+.+ ...-++.+++ |-...|++++..+++ .++.-..+... +..+ .....|..+++|..-+++.+
T Consensus 828 ---v~Gav~a------L~~fngkllA-~In~~vrLye~t~~~-eLr~e~~~~~~-~~aL-~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 828 ---VKGAVYA------LVEFNGKLLA-GINQSVRLYEWTTER-ELRIECNISNP-IIAL-DLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ---eccceee------hhhhCCeEEE-ecCcEEEEEEccccc-eehhhhcccCC-eEEE-EEEecCcEEEEeeccceEEE
Confidence 1122322 2223455554 456689999999987 66666666665 8888 77889999999998888887
Q ss_pred EECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceE
Q 000836 1207 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPS 1252 (1262)
Q Consensus 1207 WDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~ 1252 (1262)
--.+..+...... .-.-+..|++++.+-.+ ..++.+-..+++.
T Consensus 895 l~y~~~eg~f~ev-ArD~~p~Wmtaveil~~--d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 895 LQYKGDEGNFEEV-ARDYNPNWMTAVEILDD--DTYLGAENSGNLF 937 (1096)
T ss_pred EEEeccCCceEEe-ehhhCccceeeEEEecC--ceEEeecccccEE
Confidence 6655444111111 22234689999998766 4454443333433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.57 E-value=22 Score=43.35 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred CcEEEEE--------eCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEE-eCCCeEEEEeC
Q 000836 1094 VSLLLVA--------SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDL 1164 (1262)
Q Consensus 1094 g~lLaTg--------S~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsg-g~Dg~IrIWDl 1164 (1262)
...|++| ..+..|-||.... .+..+.+.+++.+....+.-....-.+-..++...|+.. +.-..+.--|+
T Consensus 419 Ns~L~Vgfrn~rsyVtR~n~IGVFk~~d-e~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDI 497 (776)
T COG5167 419 NSHLVVGFRNERSYVTRGNSIGVFKNTD-EGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDI 497 (776)
T ss_pred CceEEEEEcccceeEeeCCeeeeEeccC-CcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeec
Q ss_pred CCCceeeEeecCCCCCCeeEEEEEcCC-----------------------------------------------------
Q 000836 1165 EKEQQMVNPIPSSSDCSISALTASQVH----------------------------------------------------- 1191 (1262)
Q Consensus 1165 rs~~~~v~ti~~hs~~~VtsLa~~s~~----------------------------------------------------- 1191 (1262)
+.++ .+.....|.+ | +..+.|.
T Consensus 498 ErGk-vveeW~~~dd--v--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTe 572 (776)
T COG5167 498 ERGK-VVEEWDLKDD--V--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTE 572 (776)
T ss_pred ccce-eeeEeecCCc--c--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccccccc
Q ss_pred CCEEEEEECCCcEEEEECCCCCceeeeecCCCCCCCCeEEEEEecCCCCCEEEEecCCceEEEecc
Q 000836 1192 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1192 g~lLatGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~slafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
..++++|+..|.||+||.-...... ...+-+..|..+....+ |.++++.+.+.+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKt----alP~lG~aIk~idvta~--Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKT----ALPGLGDAIKHIDVTAN--GKHILATCKNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhh----cCcccccceeeeEeecC--CcEEEEeecceEEEEecc
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.53 E-value=91 Score=36.93 Aligned_cols=137 Identities=17% Similarity=0.236 Sum_probs=88.2
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEE----------eCCCeEEEEEcCCCCCcceEEeeeee
Q 000836 1057 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA----------SCNGNIRIWKDYDQKDKQKLVTAFSS 1126 (1262)
Q Consensus 1057 g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTg----------S~DG~IrIWD~~~~~g~~~lvsa~~~ 1126 (1262)
+.+.|+|..+++.+-.+...- .-.+..+ ++++.+.++ -..-.|.+||..+-.-..++.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~s--pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----- 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALS--PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----- 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeEC--CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----
Confidence 479999999999888876544 2235555 788877764 345579999997732222222
Q ss_pred ccC-CC-CcccccceeEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECCC
Q 000836 1127 IQG-HK-PGVRCSNVVVDWQQQSGYLYAS--GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202 (1262)
Q Consensus 1127 l~~-h~-~~V~sv~l~v~wsp~~~~Llsg--g~Dg~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~DG 1202 (1262)
+.. +. ..+...++ +..+.++.++++. +-...|.|-|+...+ .+.+++... +..+ ++....-|.+-|.||
T Consensus 85 iP~k~R~~~~~~~~~-~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~PG---C~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNM-FALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTPG---CWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp ETTS-B--BS--GGG-EEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGTS---EEEE--EEEETTEEEEEETTS
T ss_pred cCCcchheecccccc-eEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCCC---EEEE--EecCCCceEEEecCC
Confidence 121 11 11111122 6778899988888 446789999999999 888887642 2223 343446788889999
Q ss_pred cEEEEECCCC
Q 000836 1203 SVRLYDVRTP 1212 (1262)
Q Consensus 1203 sVrIWDlrs~ 1212 (1262)
++--..+...
T Consensus 158 sl~~v~Ld~~ 167 (342)
T PF06433_consen 158 SLLTVTLDAD 167 (342)
T ss_dssp CEEEEEETST
T ss_pred ceEEEEECCC
Confidence 9988888743
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=82.53 E-value=63 Score=39.34 Aligned_cols=200 Identities=10% Similarity=0.067 Sum_probs=88.7
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----cEEEEeeC---CCCCC-CCeEEEEEeecCCCcEEEEEe--CC----CeEEEEE
Q 000836 1046 FSPIVVAAD-ENERIKIWNYEED----TLLNSFDN---HDFPD-KGISKLCLVNELDVSLLLVAS--CN----GNIRIWK 1110 (1262)
Q Consensus 1046 dg~~Lasgs-~dg~I~VWD~~tg----~~l~~~~~---h~~~~-~~ItsL~fsn~~dg~lLaTgS--~D----G~IrIWD 1110 (1262)
..++|++.+ ..+.|.|.|+.+. +..+.+.. +...+ +.-..+... ++|++++++- .+ |-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl--p~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL--PDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec--CCccEEEEeccCCCCCCCCcEEEEc
Confidence 456777766 7789999999854 33344432 00000 111222232 6777777753 22 4466666
Q ss_pred cCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEe--------------------CCCeEEEEeCCCCcee
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--------------------EVSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg--------------------~Dg~IrIWDlrs~~~~ 1170 (1262)
..+ .++...|..-.+...--.. +-|+|..+.++++. ....+.+||+.+.+ .
T Consensus 164 ~~t----f~v~g~We~~~~~~~~gYD----fw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~ 234 (461)
T PF05694_consen 164 GET----FEVKGRWEKDRGPQPFGYD----FWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-L 234 (461)
T ss_dssp TTT------EEEE--SB-TT----------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-E
T ss_pred Ccc----ccccceeccCCCCCCCCCC----eEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-E
Confidence 643 4445455443332333333 78888888888873 24579999999999 9
Q ss_pred eEeecCCCCC-CeeEEEEE-cCCCC-EEEEEECCCcEEEEEC-CCCCce---eeeecC--------------CCCCCCCe
Q 000836 1171 VNPIPSSSDC-SISALTAS-QVHGG-QLAAGFVDGSVRLYDV-RTPDML---VCSTRP--------------HTQQVERV 1229 (1262)
Q Consensus 1171 v~ti~~hs~~-~VtsLa~~-s~~g~-lLatGs~DGsVrIWDl-rs~~~~---v~~~~~--------------~~gH~~~V 1229 (1262)
++++....+. ....|.+. .|+.. -|+.+...++|-.|-. ..++.. +-.+.. +..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 9999876554 12233222 23333 3555555556655533 333211 111100 00002347
Q ss_pred EEEEEecCCCCCEEEEec--CCceEEEeccc
Q 000836 1230 VGISFQPGLDPAKVNGTP--KCLPSFSDLIY 1258 (1262)
Q Consensus 1230 ~slafsp~~~g~~LaSgS--dd~I~~WDLry 1258 (1262)
+.|..+.+ .++|..+. .+.++.+|+.-
T Consensus 315 tDI~iSlD--DrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 315 TDILISLD--DRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --EEE-TT--S-EEEEEETTTTEEEEEE-SS
T ss_pred EeEEEccC--CCEEEEEcccCCcEEEEecCC
Confidence 89999999 78887776 55888898753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=82.40 E-value=35 Score=38.60 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1092 ~dg~lLaTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~Dg~IrIWDlrs~~~~v 1171 (1262)
..++.|+.|..+| |.+++.....+..+.. +...|.. +..-+.-+.+++-+ |+.+.++|+..-. ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~q----l~vl~~~~~llvLs-d~~l~~~~L~~l~-~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQ----LSVLPELNLLLVLS-DGQLYVYDLDSLE-PV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEE----EEEecccCEEEEEc-CCccEEEEchhhc-cc
Confidence 3578899999999 8999983311211111 1122665 45556666666655 4999999988755 33
Q ss_pred E---------------eecCCCCCCeeEEE-EEcCCCCEEEEEECCCcEEEEECCCCC----ceeeeecCCCCCCCCeEE
Q 000836 1172 N---------------PIPSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVG 1231 (1262)
Q Consensus 1172 ~---------------ti~~hs~~~VtsLa-~~s~~g~lLatGs~DGsVrIWDlrs~~----~~v~~~~~~~gH~~~V~s 1231 (1262)
. .+..- .. +...+ .....+...++.....+|.+|...... ...+.+ .. ...+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~-v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~l---p~~~~~ 143 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPET-KG-VSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SL---PDPPSS 143 (275)
T ss_pred ccccccccccccccccccccc-CC-eeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-Ec---CCCcEE
Confidence 3 11111 11 44442 112334444444445689998886532 133333 22 267899
Q ss_pred EEEecCCCCCEEEEecCCceEEEecc
Q 000836 1232 ISFQPGLDPAKVNGTPKCLPSFSDLI 1257 (1262)
Q Consensus 1232 lafsp~~~g~~LaSgSdd~I~~WDLr 1257 (1262)
++|..+ .++.|..+...+.|+.
T Consensus 144 i~~~~~----~i~v~~~~~f~~idl~ 165 (275)
T PF00780_consen 144 IAFLGN----KICVGTSKGFYLIDLN 165 (275)
T ss_pred EEEeCC----EEEEEeCCceEEEecC
Confidence 999855 5666655544555543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=82.27 E-value=39 Score=41.05 Aligned_cols=135 Identities=16% Similarity=0.292 Sum_probs=67.7
Q ss_pred ccccccCCCCC--eEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCcEEEEeeCCCCCCCCeE
Q 000836 1027 IACWDTRFEKG--TKTALLQPFSPIVVAAD--------------------ENERIKIWNYEEDTLLNSFDNHDFPDKGIS 1084 (1262)
Q Consensus 1027 ~~~w~~~~~~~--V~sl~fspdg~~Lasgs--------------------~dg~I~VWD~~tg~~l~~~~~h~~~~~~It 1084 (1262)
...|....+.. -...-|+|..+.++|+. ...++.|||+.+.+.++++.-.. .+....
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~-~g~~pL 248 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE-EGQMPL 248 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T-TEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC-CCCceE
Confidence 34455543322 34566677777777753 24589999999999999988765 123467
Q ss_pred EEEEeecCCCcEEEEEe-CCCeE-EEEEcCCCCCcce--EEeeeeec--cCC------------CCcccccceeEEEcCC
Q 000836 1085 KLCLVNELDVSLLLVAS-CNGNI-RIWKDYDQKDKQK--LVTAFSSI--QGH------------KPGVRCSNVVVDWQQQ 1146 (1262)
Q Consensus 1085 sL~fsn~~dg~lLaTgS-~DG~I-rIWD~~~~~g~~~--lvsa~~~l--~~h------------~~~V~sv~l~v~wsp~ 1146 (1262)
.|.|.+.++...=.+|+ -..+| ++|.... ++.. .|-.+-.. .+- ..-++. +..+.+
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~--g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD----I~iSlD 322 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDD--GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD----ILISLD 322 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ET--TEEEEEEEEEE--EE--SS---GGGGGG-EE----------EEE-TT
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCC--CCeeeeEEEECCCcccCcccccccccccccCCCceEe----EEEccC
Confidence 88998666666544444 23333 3333332 3322 11111000 000 123455 677889
Q ss_pred CCEEEEEeC-CCeEEEEeCCCCc
Q 000836 1147 SGYLYASGE-VSSIMLWDLEKEQ 1168 (1262)
Q Consensus 1147 ~~~Llsgg~-Dg~IrIWDlrs~~ 1168 (1262)
+.+|+++.. .|.||.||+....
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCEEEEEcccCCcEEEEecCCCC
Confidence 999999976 8999999998754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.16 E-value=8.4 Score=48.68 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHh-hccCCChhhHHHHHHHHHHHHHhh
Q 000836 694 IRSLLT-VVSDGSPLVRAEVAVALARFAFGH 723 (1262)
Q Consensus 694 ~~~ll~-~~~D~sp~VR~E~~~~ls~~~~~~ 723 (1262)
++.||+ +..|+--.||+-+.++++-+..++
T Consensus 625 Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 625 AINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 355665 678999999999999999887654
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.89 E-value=8.2 Score=49.99 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHH
Q 000836 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAI 640 (1262)
Q Consensus 561 ~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~ 640 (1262)
.|..-|=||+.++-..|+ .++.++-.++. .+.|-.|.-++-++.-.+.+.+..-. .+.......
T Consensus 948 tR~vvAECLGkL~l~epe--------sLlpkL~~~~~-------S~a~~~rs~vvsavKfsisd~p~~id-~~lk~~ig~ 1011 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPE--------SLLPKLKLLLR-------SEASNTRSSVVSAVKFSISDQPQPID-PLLKQQIGD 1011 (1233)
T ss_pred hHHHHHHHhhhHHhCChH--------HHHHHHHHHhc-------CCCcchhhhhhheeeeeecCCCCccC-HHHHHHHHH
Confidence 366666666665544443 44555555555 66777777777777666665433222 222333448
Q ss_pred HhhhhcCCCHHHHHHHHHHHhhcccc
Q 000836 641 YVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 641 l~~ll~D~sPeVRaa~v~als~~v~~ 666 (1262)
++.++.||.++||.+++.+|.+++-.
T Consensus 1012 fl~~~~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 1012 FLKLLRDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHcc
Confidence 99999999999999999999999843
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=81.02 E-value=2.4 Score=33.06 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=32.9
Q ss_pred hhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcc
Q 000836 627 EAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 627 ~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v 664 (1262)
+.+...++.++.+.|..++.++++.|+++++++|+++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 45666777888889999999999999999999999875
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=80.83 E-value=2.2 Score=48.43 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=60.0
Q ss_pred cCCCceEEEEEcCCCCCCCCCCCeEEEecCCCCeeeccchHHHhhhcCC--------CeEEEEeCCchhhHHHHHHhhcc
Q 000836 187 YAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKT--------PSIYVFDCSAAGMIVNAFIELHD 258 (1262)
Q Consensus 187 ~~~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t~y~p~~~~~l~~~~~~--------p~~~v~Dc~~Ag~i~~~~~~~~~ 258 (1262)
.-++++|++.|.|||-|. +..|. + .-.++-.||..++.. ..++|+|+..||.+++.+.+
T Consensus 103 s~~~D~vfiy~~~HG~~~------~l~~~-~---~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~~L~~--- 169 (256)
T PF01650_consen 103 STENDNVFIYFTGHGGPG------FLKFP-D---GEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFEGLLK--- 169 (256)
T ss_pred CCCCCeEEEEEeccCCCC------cccCC-C---cccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhhccCC---
Confidence 347889999999999986 22332 1 123566666666543 46999999999999888322
Q ss_pred CCCCCCCCCCCceEEEEecCCcCCCCCCCCCCchhhhhcccchH
Q 000836 259 WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1262)
Q Consensus 259 ~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lP~DlftscL~tP~ 302 (1262)
..+.+++.|+.++|.==-... +.+-...||..-.
T Consensus 170 ---------~~nv~~iTAa~~~e~Sy~~~~-~~~~~~~~l~d~f 203 (256)
T PF01650_consen 170 ---------SPNVYVITAANADESSYGCYC-SDDSIGTYLGDAF 203 (256)
T ss_pred ---------CCCEEEEecCCcccccccccc-cccccccEeHHHH
Confidence 257888888887775221111 3444455665443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.1 Score=47.81 Aligned_cols=131 Identities=19% Similarity=0.226 Sum_probs=81.9
Q ss_pred hhhhhhcCCCchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHH
Q 000836 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEAC 583 (1262)
Q Consensus 504 pyvlkLLqs~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~ 583 (1262)
-|+-+||.+-.+-+|.--+|-+|.-.+. .+..-.+ .-.+.+ .-+|..+..|.-|...|+.+|.+-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~G--Tgn~~vv-----~~lLh~-avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVG--TGNLGVV-----STLLHY-AVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhc--CCcchhH-----hhhhee-ecccCchHHHHHHHHheeeeEecCc------
Confidence 3555677766666676666666543222 1111111 112222 1233335678778888887774433
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhc
Q 000836 584 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 584 ~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~ 663 (1262)
.++-..+++|.+ .-+|-||....++||-.+.+... . .+...|.+|..|+...||.+|++++|.+
T Consensus 585 ---~~lv~tvelLs~------shN~hVR~g~AvaLGiacag~G~--~-----~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 585 ---DLLVGTVELLSE------SHNFHVRAGVAVALGIACAGTGD--K-----VATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred ---chhhHHHHHhhh------ccchhhhhhhHHHhhhhhcCCcc--H-----HHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 345556677764 45788999999999988877432 1 2234678888999999999999999988
Q ss_pred c
Q 000836 664 L 664 (1262)
Q Consensus 664 v 664 (1262)
+
T Consensus 649 l 649 (926)
T COG5116 649 L 649 (926)
T ss_pred H
Confidence 7
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.64 E-value=32 Score=43.84 Aligned_cols=148 Identities=14% Similarity=0.216 Sum_probs=80.0
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEeecCCCcEEEEEeCCCe-----EEEEEcCCC
Q 000836 1046 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN-----IRIWKDYDQ 1114 (1262)
Q Consensus 1046 dg~~Lasgs~d------g~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaTgS~DG~-----IrIWD~~~~ 1114 (1262)
.+...++||.+ .++..||..+++=. .+..-..+.... +++. -+|.+.++|+.||. |-.||..+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~-~~a~M~~~R~~~-~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~- 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT-PVAPMNTKRSDF-GVAV---LDGKLYAVGGFDGEKSLNSVECYDPVT- 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCcee-ccCCccCccccc-eeEE---ECCEEEEEeccccccccccEEEecCCC-
Confidence 34677778877 35777888766511 121111000111 2333 37889999999975 66677765
Q ss_pred CCcceEEeeeeeccCCCCcccccceeEEEcCCCCEEEEEeCC------CeEEEEeCCCCce-eeEeecCCCCCCeeEEEE
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------SSIMLWDLEKEQQ-MVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~~~~Llsgg~D------g~IrIWDlrs~~~-~v~ti~~hs~~~VtsLa~ 1187 (1262)
.+. .....+.....+.+. +.+ ++...++||.+ .++..||..++++ .+..+...... ..++.
T Consensus 406 -~~W------~~va~m~~~r~~~gv-~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~--~g~a~ 473 (571)
T KOG4441|consen 406 -NKW------TPVAPMLTRRSGHGV-AVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG--FGVAV 473 (571)
T ss_pred -Ccc------cccCCCCcceeeeEE-EEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc--ceEEE
Confidence 333 333323222222222 222 24444555533 4578899888772 22223222221 22212
Q ss_pred EcCCCCEEEEEECCCc-----EEEEECCCCC
Q 000836 1188 SQVHGGQLAAGFVDGS-----VRLYDVRTPD 1213 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGs-----VrIWDlrs~~ 1213 (1262)
-++.+.+.|+.||. |..||..+.+
T Consensus 474 --~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 474 --LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred --ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 37888999988873 7889988776
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.64 E-value=0.41 Score=60.52 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=88.2
Q ss_pred CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEe---------ecCCCcEEEEEeC
Q 000836 1035 EKGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV---------NELDVSLLLVASC 1102 (1262)
Q Consensus 1035 ~~~V~sl~fsp---dg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fs---------n~~dg~lLaTgS~ 1102 (1262)
++.+.-+.|.| ..-++..+.++++|++.++.+... ..|.+|. .++++++|. =.+||..+++++.
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs---~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHS---QRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcC---CCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 44455566655 555777788899999988876432 3344565 444444331 0378999999999
Q ss_pred CCeEEEEEcCCCCCcceEEeeeeeccCCCCcccccceeEEEcCC-----------CCEEEEEeC-CCeEEEEeCCCCcee
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-----------SGYLYASGE-VSSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~v~wsp~-----------~~~Llsgg~-Dg~IrIWDlrs~~~~ 1170 (1262)
||.++.|.++- .|+. .......++.|...-. ++|.-+ -.+++++++ .+.+++|.-...+ |
T Consensus 256 dG~v~f~Qiyi-~g~~-~~rclhewkphd~~p~-----vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~-C 327 (1283)
T KOG1916|consen 256 DGSVGFYQIYI-TGKI-VHRCLHEWKPHDKHPR-----VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ-C 327 (1283)
T ss_pred CCccceeeeee-eccc-cHhhhhccCCCCCCCc-----eeeeeccccccCCccceeEEEEecccCCcceeEeeccchh-h
Confidence 99999999875 2211 1111122333432111 122111 124555544 5679999877766 6
Q ss_pred eEeecCCCCCCeeEEEEEcCCCC------------EEEEEECCCcEEEEECCC
Q 000836 1171 VNPIPSSSDCSISALTASQVHGG------------QLAAGFVDGSVRLYDVRT 1211 (1262)
Q Consensus 1171 v~ti~~hs~~~VtsLa~~s~~g~------------lLatGs~DGsVrIWDlrs 1211 (1262)
+..+- -+. |..+ . .++|. .++.-.-||.|++|--+.
T Consensus 328 ll~~~--~d~-v~iV-~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 328 LLDKL--IDG-VQIV-G-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hhhhc--ccc-eEee-c-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 62111 111 3333 2 22222 234456688888886554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=80.59 E-value=1.4e+02 Score=36.03 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEe--ecCCCcE--EEEEe-CC---CeEEEEEcCCCCC
Q 000836 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV--NELDVSL--LLVAS-CN---GNIRIWKDYDQKD 1116 (1262)
Q Consensus 1045 pdg~~Lasgs~dg~I~VWD~~tg~~l~~~~~h~~~~~~ItsL~fs--n~~dg~l--LaTgS-~D---G~IrIWD~~~~~g 1116 (1262)
|...+++....++-+.|||+. |+.+..+.... ++-+..- =.-.+.. |++++ .+ .+|++|.+....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr-----~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGR-----PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCC-----cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 455578888889999999998 77777775433 3322221 0112332 34444 32 4799999864223
Q ss_pred cceEEeee-eeccCCCCcccccceeEEEcCCCC--EEEEEeCCCeEEEEeCC---CCc---eeeEeecCCCCCCeeEEEE
Q 000836 1117 KQKLVTAF-SSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLE---KEQ---QMVNPIPSSSDCSISALTA 1187 (1262)
Q Consensus 1117 ~~~lvsa~-~~l~~h~~~V~sv~l~v~wsp~~~--~Llsgg~Dg~IrIWDlr---s~~---~~v~ti~~hs~~~VtsLa~ 1187 (1262)
....+... ..+......+. ++|+--++..+ +.++.+.+|.+..|-+. .+. ..+++|...+. +..|..
T Consensus 140 ~L~~v~~~~~p~~~~~~e~y--Glcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ--~EGCVV 215 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPY--GLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ--PEGCVV 215 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEE--EEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEE
T ss_pred cceEcCCCCcccccccccce--eeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc--ceEEEE
Confidence 32222110 00111111233 34343444433 56667889988777654 222 26788877554 777734
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCC----ceeeeecCCCCCCCCeEEEEEecCC-CCCEEEEec--CCceEEEecc
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVGISFQPGL-DPAKVNGTP--KCLPSFSDLI 1257 (1262)
Q Consensus 1188 ~s~~g~lLatGs~DGsVrIWDlrs~~----~~v~~~~~~~gH~~~V~slafsp~~-~g~~LaSgS--dd~I~~WDLr 1257 (1262)
......|..|-.|.-|.-|+..... ..+... .-.+....|-+|++-... +..+|+.+| ++...+||..
T Consensus 216 -DDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 216 -DDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp -ETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred -ecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 4455577778888777777776322 112111 112345678888885431 234666666 4478888853
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=80.51 E-value=66 Score=38.48 Aligned_cols=150 Identities=11% Similarity=0.179 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--EEEEeeCCCCCCCCeEEEEEeecCCCcEEEE
Q 000836 1036 KGTKTALLQPFSPIVVAAD-----------ENE-RIKIWNYEE--DT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lasgs-----------~dg-~I~VWD~~t--g~--~l~~~~~h~~~~~~ItsL~fsn~~dg~lLaT 1099 (1262)
..+..|+|.++|+++++-. ..+ .|.+++-.+ |+ ....|.... ...+.+++. .++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---~~p~Gi~~~--~~G-lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---SMVTGLAVA--VGG-VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---CCccceeEe--cCC-EEE-
Confidence 4578999999999777642 223 777776543 32 233444333 455778885 566 444
Q ss_pred EeCCCeEEEEEcCCCCC----cce-EEeeeeeccC-CCCcccccceeEEEcCCCCEEEEEeCC-----------------
Q 000836 1100 ASCNGNIRIWKDYDQKD----KQK-LVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEV----------------- 1156 (1262)
Q Consensus 1100 gS~DG~IrIWD~~~~~g----~~~-lvsa~~~l~~-h~~~V~sv~l~v~wsp~~~~Llsgg~D----------------- 1156 (1262)
++.+...++.|... ++ +.+ +++.+..-.. +...... +.|.++|...++-+..
T Consensus 87 ~~~~~i~~~~d~~g-dg~ad~~~~~l~~~~~~~~~~~~~~~~~----l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 87 ATPPDILFLRDKDG-DDKADGEREVLLSGFGGQINNHHHSLNS----LAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred eCCCeEEEEeCCCC-CCCCCCccEEEEEccCCCCCcccccccC----ceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 44444333434432 22 222 2222211100 1223445 8888977655444421
Q ss_pred --CeEEEEeCCCCceeeEeecCCCCCCeeEEEEEcCCCCEEEEEECC
Q 000836 1157 --SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201 (1262)
Q Consensus 1157 --g~IrIWDlrs~~~~v~ti~~hs~~~VtsLa~~s~~g~lLatGs~D 1201 (1262)
+.|.-+|....+ +..+...... ...+ .+++.|.++++-..+
T Consensus 162 ~~g~i~r~~pdg~~--~e~~a~G~rn-p~Gl-~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGK--LRVVAHGFQN-PYGH-SVDSWGDVFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCe--EEEEecCcCC-Cccc-eECCCCCEEEEccCC
Confidence 334455554444 2233222221 4677 677889888775533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.46 E-value=18 Score=44.69 Aligned_cols=211 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred hHHHhcc---chhHHHHHHHHHHHhcCCHHHHHHH-----------------------HhcCC-------hhhhhhhcCC
Q 000836 466 VLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLA-----------------------LSVGI-------FPYVLKLLQT 512 (1262)
Q Consensus 466 VLqvLlS---~~~rlral~lL~~fld~gpwAv~la-----------------------ls~gi-------fpyvlkLLqs 512 (1262)
+||.||+ -+-|+-|+.+|.+..-..|--|..+ |+.|- +--+......
T Consensus 307 ~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD 386 (898)
T COG5240 307 SLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHD 386 (898)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHh
Q ss_pred CchhHHHHHHHHHHHHhccChhhhhhhhccccHHHHHHhhcCCCCcHHHHHHHHHHHHHHhcCChhhhHHHHhhchHHHH
Q 000836 513 TTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 592 (1262)
Q Consensus 513 ~~~elr~~lvFIwa~il~~d~~~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~aafiLs~l~~~~~~gq~~~~~~~~~~~~ 592 (1262)
-++..|-+.+=.+-.++-.+|+-| +.-..++.+.|-+... -|-|.-+.=+++-+..+.|+ .+..+++.+
T Consensus 387 ~SD~FKiI~ida~rsLsl~Fp~k~-----~s~l~FL~~~L~~eGg-~eFK~~~Vdaisd~~~~~p~-----skEraLe~L 455 (898)
T COG5240 387 MSDGFKIIAIDALRSLSLLFPSKK-----LSYLDFLGSSLLQEGG-LEFKKYMVDAISDAMENDPD-----SKERALEVL 455 (898)
T ss_pred hccCceEEeHHHHHHHHhhCcHHH-----HHHHHHHHHHHHhccc-chHHHHHHHHHHHHHhhCch-----HHHHHHHHH
Q ss_pred HHhhcCCCCCCCCCcHHHHHHHHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhccccCcccCC
Q 000836 593 LKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCR 672 (1262)
Q Consensus 593 ~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~~~~~~~ 672 (1262)
|+.++ +.+.-+-++..||-|-...+.++ -.......++.-+-=..-.||+|||.||+.|.-...|.+.
T Consensus 456 C~fIE---------Dcey~~I~vrIL~iLG~EgP~a~---~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 456 CTFIE---------DCEYHQITVRILGILGREGPRAK---TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred HHHHh---------hcchhHHHHHHHHHhcccCCCCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 000836 673 DGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716 (1262)
Q Consensus 673 ~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~l 716 (1262)
. +++...|-.+++|..-.||..+..++
T Consensus 524 ~-----------------~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 524 P-----------------QSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred H-----------------HHHHHHHHHHhhcccHHHHHHHHHHH
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=22 Score=47.50 Aligned_cols=186 Identities=18% Similarity=0.131 Sum_probs=119.5
Q ss_pred hHHHhccch--hHHHHHHHHHHHhcCCH-HHHHHHHhcCChhhhhhhcCCCchhHHHH----HHHHHHHHhccChhhhhh
Q 000836 466 VLQVLLSQC--HRFRALVLLGRFLDMGP-WAVDLALSVGIFPYVLKLLQTTTPELRQI----LVFIWTKILALDKSCQVD 538 (1262)
Q Consensus 466 VLqvLlS~~--~rlral~lL~~fld~gp-wAv~lals~gifpyvlkLLqs~~~elr~~----lvFIwa~il~~d~~~Q~d 538 (1262)
+++.+++-. -+..++..|.+.+++.+ |-..+. .--+|=++-++..-....|.+ ++||-+ |-.. .|
T Consensus 702 L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-i~~~-----~d 773 (1176)
T KOG1248|consen 702 LLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILSLKEVNVKARRNAFALLVFIGA-IQSS-----LD 773 (1176)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHhcccccHHHHhhHHHHHHHHHH-HHhh-----hc
Confidence 445555422 24455555555777766 554443 223444444444333333332 555553 1111 01
Q ss_pred hhccc---cHHHHHHhhcCCCCcHHHHHHHH--HHHHHHhcCChhhhHHHHhhchHHHHHHhhcCCCCCCCCCcHHHHHH
Q 000836 539 LVKDG---GHAYFIRFLDSMEAYPEQRAMAA--FVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1262)
Q Consensus 539 l~k~~---~~~yf~~~L~~~~~~~e~ra~aa--fiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w 613 (1262)
..++. -++-|+..|....+.+++|--|+ +.++.+..++...-..-.=.++++..+..|. ...|++|..
T Consensus 774 ~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~-------s~sreI~ka 846 (1176)
T KOG1248|consen 774 DGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA-------SNSREIAKA 846 (1176)
T ss_pred ccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh-------cCCHHHHHH
Confidence 11111 34557777754433345555444 5666677777666555555677788788888 789999999
Q ss_pred HHHHHHhhhcCchhhhHhhhccCchHHHhhhhcCCCHHHHHHHHHHHhhcccc
Q 000836 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~als~~v~~ 666 (1262)
++-.+..++...++.......+.+...++.+++|..-.||+.+-..|-.+|.+
T Consensus 847 AI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 847 AIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999887777777777899999999999999999999999954
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 41/256 (16%), Positives = 72/256 (28%), Gaps = 19/256 (7%)
Query: 457 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPE 516
+P + Q R AL LL + A D G+ V + L+
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 517 LRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576
LR + + Q ++ G +R LD +A R A F ++ +V
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQ 156
Query: 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 636
G + V ++ +Q Q L L E +
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQ-------QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209
Query: 637 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD-----------EECDDDE 685
V L+ + +L +L+ R+ E + + E
Sbjct: 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269
Query: 686 KIRAEISIIRSLLTVV 701
+ + E+ LL
Sbjct: 270 EYQEELEFCEKLLQTC 285
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 52/363 (14%), Positives = 119/363 (32%), Gaps = 42/363 (11%)
Query: 383 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQ 442
E + + N P + A +LP + N S EQ
Sbjct: 50 EALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLN-----SDDMQEQ 104
Query: 443 LTAFEVWLDHGSEHKKPPEQLPIV------LQVLLSQCH----RFRALVLLGRFLDMGPW 492
L+A + S +PP + I L + + + A L
Sbjct: 105 LSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164
Query: 493 AVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552
+ + P ++LL T + E+++ ++ + + +++ +
Sbjct: 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF 224
Query: 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQ 612
+S + P A + L+ + G + + + + + K + D +T L
Sbjct: 225 NSNK--PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS---MDTET----LV 275
Query: 613 WLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCR 672
C + L + EA P V LLS V+ A+ ++G ++
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-------- 327
Query: 673 DGVEGDEECDDDEKIRAEIS--IIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSI 730
+D + + I+ ++ +L ++S ++ E ++ G+ + ++++
Sbjct: 328 --------TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV 379
Query: 731 AAA 733
A
Sbjct: 380 IDA 382
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 22/199 (11%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPD---KGISKLCLVNELDVS--- 1095
+ P ++ + + +++Y + PD +G K L +
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE--GYGLSWNPNL 193
Query: 1096 --LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1153
LL AS + I +W + +++ A + GH V V W L+ S
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED----VAWHLLHESLFGS 249
Query: 1154 GEV-SSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210
+M+WD + + + + + ++ L+ + LA G D +V L+D+R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 1211 TPDMLVCSTRPHTQQVERV 1229
+ + S H ++ +V
Sbjct: 309 NLKLKLHSFESHKDEIFQV 327
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 52/195 (26%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDT---LLNSFDNHDFPDKGISKLCLVNELDVS--- 1095
+ + + +++++ IW+ + ++ D H VN L +
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE---------VNCLSFNPYS 289
Query: 1096 --LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYA 1152
+L S + + +W D + L S + HK + V W L +
Sbjct: 290 EFILATGSADKTVALW------DLRNLKLKLHSFESHKDEIFQ----VQWSPHNETILAS 339
Query: 1153 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ----------------LA 1196
SG + +WDL K + + + D L +HGG +
Sbjct: 340 SGTDRRLHVWDLSKIGEEQST-EDAEDGPPELLF---IHGGHTAKISDFSWNPNEPWIIC 395
Query: 1197 AGFVDGSVRLYDVRT 1211
+ D ++++ +
Sbjct: 396 SVSEDNIMQVWQMAE 410
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 46/231 (19%)
Query: 1030 WDTRFEKGTKTALLQP---------FSP----IVVAADENERIKIWNYEEDT--LLNSFD 1074
WD + T F+ + + + ++ + D
Sbjct: 101 WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD 160
Query: 1075 NHDFPDKGISKLCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1130
+ D+ +DVS +L G + + D + K + H
Sbjct: 161 SWDYW---------YCCVDVSVSRQMLATGDSTGRLLLL-GLDGHEIFKE-------KLH 203
Query: 1131 KPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSS-SDCSISALTAS 1188
K V ++ + +L A+ V +++ LWDL + + I + ++A +
Sbjct: 204 KAKVTH----AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN 259
Query: 1189 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI---SFQP 1236
+L +R+Y H + + + ++ P
Sbjct: 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII-HPHRQFQHLTPIKATWHP 309
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 24/189 (12%)
Query: 1046 FSP----IVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1099
+ P V + I +W+Y+ T I+ + N+ + + L V
Sbjct: 81 WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP---GDAITGMK-FNQFNTNQLFV 136
Query: 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159
+S G + D+ Q C VD L +
Sbjct: 137 SSIRGATTLR-DFSGSVIQVFAKT----DSWDYWYCC----VDVSVSRQMLATGDSTGRL 187
Query: 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-- 1217
+L L+ + + ++ + +A VD +V+L+D+R
Sbjct: 188 LLLGLDGHE--IFKEKLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244
Query: 1218 STRPHTQQV 1226
+ PH + V
Sbjct: 245 AEMPHEKPV 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 55/396 (13%), Positives = 110/396 (27%), Gaps = 133/396 (33%)
Query: 51 VTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDS-GLVSKWRPKDRMKTGCVAL 109
+TT T L+ T + + P + L+ K+
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLKY------------- 310
Query: 110 VLCLNISVD--PPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYK 167
L+ P +V+ +P + L I +++ W +K
Sbjct: 311 ---LDCRPQDLPREVLTTNP----------------RRLSIIAESIRDGLATWD---NWK 348
Query: 168 VQLDPTVDEVKKLCNTCRRYAKGE--RVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLP 225
D++ + + + R +F + +F S +P
Sbjct: 349 ---HVNCDKLTTIIESSLNVLEPAEYRKMFD-------------RLSVFPPS----AHIP 388
Query: 226 ISDLDS-WLKTPSIYVFDCSAAGMIVNAFIELHDWG-----ASNYSGSTRDCILLAACEA 279
L W V +VN +LH + + S L +
Sbjct: 389 TILLSLIWFDVIKSDVMV------VVN---KLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 280 ------HETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLD---YSLI----DK 326
H ++ P + F L+ LD YS I
Sbjct: 440 ENEYALHRSIVDHYNIP----------------KTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 327 IPGRQTDR----RTLLGELNWIFTAV-TDTIAWNVLPH--DLFQRL--FRQ--------- 368
I +R R + + ++ + D+ AWN + Q+L ++
Sbjct: 484 I--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 369 DLLVASLFRNFL--LAERIMRSANCSPISHPMLPPT 402
+ LV ++ +FL + E ++ S + ++
Sbjct: 542 ERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 9e-08
Identities = 52/402 (12%), Positives = 107/402 (26%), Gaps = 98/402 (24%)
Query: 915 FRTPPVSPPRQSFLPGMRRVCSLEFRPHLIN-SPDSGLA-DPLLGSGDPSAVSE--RS-- 968
+ V + R L+ R L+ P + D +LGSG + S
Sbjct: 120 YNDNQVFAKY--NVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 969 --LLPPSTIYNW-SCGHFSKP---------LLTAADDTEEILARREEREKFALEHIAKCQ 1016
I+ W + + + P LL D + K + I
Sbjct: 176 VQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 1017 RSSVSKLNNPIA------CWDTR----FEKGTKTALLQPFSPIVVAADENERIKI----- 1061
R + + + F K L F + I
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 1062 -WNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114
D + + D P ++ N +S++ S + W ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLP----REVLTTNPRRLSII-AESIRDGLATWDNWKH 349
Query: 1115 KDKQKLVTAF-SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV----SSI------MLW- 1162
+ KL T SS+ +P ++++ ++ V + I ++W
Sbjct: 350 VNCDKLTTIIESSLNVLEPA--------EYRK----MFDRLSVFPPSAHIPTILLSLIWF 397
Query: 1163 DLEKE--QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220
D+ K +VN +L Q + ++ + + + +
Sbjct: 398 DVIKSDVMVVVN------KLHKYSLVEKQPK---------ESTISIPSI---YLELKVKL 439
Query: 1221 PHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIY-FLA 1261
+ + R + + P + P Y +
Sbjct: 440 ENEYALHRSIVDHYNI---PKTFDSDDLIPPYLDQYFYSHIG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 77/573 (13%), Positives = 145/573 (25%), Gaps = 221/573 (38%)
Query: 134 WI-DPFSMAP-QKALETIGKNLSQQYERW----QPRARYKVQLDPTVDEVKKLCNTCRRY 187
++ P Q ++ T + +Q +R Q A+Y V + KL
Sbjct: 93 FLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLEL 147
Query: 188 AKGERVLFH--------------YNGHGVPKPTANGEIWL-------------------- 213
+ VL + V WL
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 214 -FNKSYTQY------IPLPISDLDSWLKT--------PSIYVFD--CSAAGMIVNAFIEL 256
+ ++T I L I + + L+ + V +A NAF
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAF--- 262
Query: 257 HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLH 316
+ C +L LTT R
Sbjct: 263 -NLS----------CKIL-----------------------LTT------R--------- 273
Query: 317 ESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLF 376
+ D + T + L + T ++ SL
Sbjct: 274 ---FKQVTDFLSAATTTHIS-LDHHSMTLT--------------------PDEVK--SLL 307
Query: 377 RNFL------LAERIMRSANCSPISHPMLPPTHQHH--MWDAW--------DMAAEICLS 420
+L L ++ +P ++ + + WD W E L+
Sbjct: 308 LKYLDCRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 421 QLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVL---------- 470
L +P AEY+ F ++L+ F P +L ++
Sbjct: 365 VL-----EP-AEYR--KMF-DRLSVFP-------PSAHIPTI---LLSLIWFDVIKSDVM 405
Query: 471 --LSQCHRFRALVLLGRFLDMGPWAV-DLALSVGIFPYVLKLLQTTTPELRQILVFIWTK 527
+++ H++ L+ + ++ + L LK+ L + +V
Sbjct: 406 VVVNKLHKYS---LVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIV---DH 452
Query: 528 ILALDKSCQVDLVKDGGHAYFIRFLDSMEAY----PEQRAMAAFVLAVIVDGHRRGQEAC 583
DL+ YF + + E V +D
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTLFRMVFLDFR------F 502
Query: 584 IEAGLIHVCL-KHLQGSMPNDAQTEPLFLQWLC 615
+E + H + GS+ N Q + ++C
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-06
Identities = 54/400 (13%), Positives = 118/400 (29%), Gaps = 118/400 (29%)
Query: 250 VNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWF 309
+AF++ ++ + + + + + +F + L+ M + F
Sbjct: 26 EDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK-F 82
Query: 310 CKRSLLHESLDYS-LIDKIP----GRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQR 364
+ L ++Y L+ I R + + + ++ +NV + +
Sbjct: 83 VEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 365 LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHM------WDAWDMAAEIC 418
L RQ LL +N L+ + W +A ++C
Sbjct: 140 L-RQALLELRPAKNVLI-----------------------DGVLGSGKTW----VALDVC 171
Query: 419 LSQLPSLVADPNAEYQPSPFFSEQLTAFEV-WLDHGSEHKKPPEQLPIVLQVLLSQCHRF 477
LS Y+ F++ WL+ + + PE + +LQ L ++
Sbjct: 172 LS------------YKVQCKMD-----FKIFWLNLKNCNS--PETVLEMLQKL---LYQI 209
Query: 478 RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF--IWTK--ILALDK 533
+ + ++ L + L+ L + P +LV + A +
Sbjct: 210 D-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 534 SCQVDLV--KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHV 591
SC++ L+ + V + H+
Sbjct: 265 SCKI-LLTTRFKQ-----------------------VTDFLSAATTT-----------HI 289
Query: 592 CLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631
L H ++ + + L L++L L E T
Sbjct: 290 SLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPR---EVLTT 325
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 23/180 (12%), Positives = 58/180 (32%), Gaps = 17/180 (9%)
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
+ ++ + + + P G +++ + LL+ I I K +
Sbjct: 60 LHFTQLKDSKTITTITTPN-PRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLR 118
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
++ + + + + Y + +I E + Q + S
Sbjct: 119 EIEV------DSANEIIY--MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170
Query: 1179 DCSISALTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
++ +H LA DG + +Y++ +PD S+R + ++ + F
Sbjct: 171 ----VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEEAKIKEVKFAD 224
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 3e-08
Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108
+++ N+ I I + + + +L + I + NE++ + A G I
Sbjct: 97 LLLLYPGNQ-ITILDSKTNKVLREIEVDS--ANEIIYMYGHNEVNTEYFIWADNRGTIGF 153
Query: 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168
Y+ + + +A + S L + +++L
Sbjct: 154 Q-SYEDDSQYIVHSA-----KSDVEYSS----GVLHKDSLLLALYSPDGILDVYNLSSPD 203
Query: 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE- 1227
Q + P + I + + +G + D +V +D+R + + +
Sbjct: 204 QASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKT 261
Query: 1228 RVVGISFQP 1236
V
Sbjct: 262 GTVTYDIDD 270
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 28/204 (13%), Positives = 66/204 (32%), Gaps = 29/204 (14%)
Query: 1015 CQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIV-------------VAADENERIKI 1061
C R + N I D++ K + + + I+ + AD I
Sbjct: 94 CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153
Query: 1062 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121
+YE+D+ D S L D LL + S +G + ++ + +
Sbjct: 154 QSYEDDSQYIVHSAKS--DVEYSSGVL--HKDSLLLALYSPDGILDVY---NLSSPDQAS 206
Query: 1122 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1181
+ F + ++ V + ++ + +++ +DL K+ + +
Sbjct: 207 SRFP--VDEEAKIKE----VKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEF 259
Query: 1182 ISALTASQVH--GGQLAAGFVDGS 1203
+ + G + A + +
Sbjct: 260 KTGTVTYDIDDSGKNMIAYSNESN 283
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 4e-05
Identities = 13/144 (9%), Positives = 37/144 (25%), Gaps = 10/144 (6%)
Query: 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152
D + + +G + + D K +I P + + + L
Sbjct: 47 DKWVCMCRCEDGALHFTQLKDSKTIT-------TITTPNPRTGGEHPAIISRGPCNRLLL 99
Query: 1153 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212
+ I + D + + + S++ I ++V+ G++
Sbjct: 100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD 159
Query: 1213 DMLVCSTRPHTQQVERVVGISFQP 1236
+ + +
Sbjct: 160 SQYIVHSAKSDVEYSSG---VLHK 180
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 50/308 (16%), Positives = 100/308 (32%), Gaps = 67/308 (21%)
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV--KDGGHAYFIRF 551
+++A I +++++ + +PE + + K+L+ + + +D V G A F+ F
Sbjct: 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEF 72
Query: 552 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPN--------- 602
L E + +A+VL I G+ I+AG + + ++ L +
Sbjct: 73 LKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131
Query: 603 ---------------------------DAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 635
Q + L L + + +
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191
Query: 636 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEIS--I 693
+ LL +V A A ++L L D ++KI+A I +
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSD----------------GPNDKIQAVIDAGV 235
Query: 694 IRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIK 753
R L+ ++ V + A+ G + I +L SL H+
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC----------SALQSLLHLL 285
Query: 754 TTGSGSIV 761
++ SI
Sbjct: 286 SSPKESIK 293
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 35/254 (13%), Positives = 74/254 (29%), Gaps = 23/254 (9%)
Query: 450 LDHGSEHKKPPEQ----LPIVLQVLLSQCHRFRALVL--LGRFLDMGPWAVDLALSVGIF 503
L G + L ++ +L A L D + + G+
Sbjct: 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRA 563
+++LL ++ + I+ D ++ + L S + +
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK--ESIKK 294
Query: 564 MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623
A + ++ I G+R + I+A + + LQ + E + +
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTA-------EFRTRKEAAWAITNATS 347
Query: 624 DFTEAQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD---- 678
+ Q LL+ ++ A+ L +L +G + G
Sbjct: 348 GGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407
Query: 679 ---EECDDDEKIRA 689
EE +KI
Sbjct: 408 ALIEEAYGLDKIEF 421
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 1e-08
Identities = 66/446 (14%), Positives = 130/446 (29%), Gaps = 66/446 (14%)
Query: 424 SLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQL----PIVLQVLLSQCHRFR- 478
VAD + +Y + + F LD G + P Q P +Q L +
Sbjct: 76 EQVADIDGQYAMTRAQRVRAAMFPETLDEGMQ--IPSTQFDSAHPTNVQRLAEPSQMLKH 133
Query: 479 ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538
A+V L + D D L+ P + KLL + + ++ + S
Sbjct: 134 AVVNLINYQD------DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187
Query: 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598
+ + +R + + R + L + HR G A ++G I + L
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARC-TSGTLHNLSH-HREGLLAIFKSGGIPALVNMLG- 244
Query: 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVF 658
S + L L A+ R A V LL++ + A
Sbjct: 245 SPVDSVLFH------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298
Query: 659 SLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEIS---IIRSLLTVVSDGSPLVRAEVAVA 715
L L +++ + I ++L+ ++ +
Sbjct: 299 CLQIL-----------------AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 716 LARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA 775
+ + + +I A G + +L T S +V + + L + + A
Sbjct: 342 VLKVLSVCSSNKPAIVEA----------GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391
Query: 776 VVRDGRVSTSSPLANAGLMHGSP------------LSDDSSQHSDSGILNDGVSNGVVNH 823
++G L L L+ ++ ++ + G +V
Sbjct: 392 TKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRT 449
Query: 824 MRPKPLDSAIYSQCVLAMCTLAKDPS 849
+ I + A+ L
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQ 475
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 39/203 (19%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LLL 1098
F P V+ + R++IWNYE + S + P V ++
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP---------VRAGKFIARKNWII 71
Query: 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV--DWQQQSGYLYASGEV 1156
V S + IR++ +Y+ +K + H +R + V SG
Sbjct: 72 VGSDDFRIRVF-NYNTGEKVV------DFEAHPDYIRS--IAVHPT-----KPYVLSG-- 115
Query: 1157 S---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
S ++ LW+ E + + + + A+G +D +V+++ +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 1214 MLVCSTRPHTQQVERVVGISFQP 1236
T + V V P
Sbjct: 175 PNFTLTTGQERGV-NYVDYYPLP 196
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 25/197 (12%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL----DVSL 1096
F+ + + E I IW+ + T S P + +S + V L ++
Sbjct: 121 FNAKQDNVLASGGNNGE-IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH 179
Query: 1097 LLV-ASCNGNIRIWKDYDQKDKQKLVT--AFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1153
+ A + IW D K K++++ S G K + V+W ++ A+
Sbjct: 180 VFASAGSSNFASIW---DLKAKKEVIHLSYTSPNSGIKQQLSV----VEWHPKNSTRVAT 232
Query: 1154 GEVS----SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
S SI++WDL + + I +L L + D +V L++
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 1210 RTPDMLVCSTRPHTQQV 1226
+ + +
Sbjct: 293 ESAE-QLSQFPARGNWC 308
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 32/201 (15%), Positives = 74/201 (36%), Gaps = 30/201 (14%)
Query: 1046 FSP---IVVAADENERIKIWNYE----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098
+S I+ A +N +++++ + F NH K + N ++L
Sbjct: 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK----FNAKQDNVLA 130
Query: 1099 VASCNGNIRIW--KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
NG I IW + V + W Q +++AS
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS----LAWNQSLAHVFASA-- 184
Query: 1157 SS---IMLWDLEKEQQMVNPIPSSSDC----SISALTASQVHGGQLAAG---FVDGSVRL 1206
S +WDL+ ++++++ +S + +S + + ++A D S+ +
Sbjct: 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 1207 YDVRTPDMLVCS-TRPHTQQV 1226
+D+R + + + + H + +
Sbjct: 245 WDLRNANTPLQTLNQGHQKGI 265
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 35/204 (17%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS------ 1095
++ + +A + IW+ + + P+ GI + V
Sbjct: 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS-PNSGIKQQLS----VVEWHPKNS 227
Query: 1096 -LLLVASCNGN---IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1151
+ A+ + N I IW D ++ + + QGH+ G+ +DW Q +L
Sbjct: 228 TRVATATGSDNDPSILIW---DLRNANTPLQTLN--QGHQKGILS----LDWCHQDEHLL 278
Query: 1152 ASGEVS---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208
S +++LW+ E +Q ++ P+ + + A D + +
Sbjct: 279 LSS--GRDNTVLLWNPESAEQ-LSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 1209 VRTPDMLVCSTRPHTQQVERVVGI 1232
++ + T+Q E
Sbjct: 335 LQNLTNTLDEQETETKQQESETDF 358
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 19/155 (12%), Positives = 53/155 (34%), Gaps = 26/155 (16%)
Query: 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP--GVRCSNVVVDWQQQSGY 1149
+D + S + ++ +W ++ + + +DW +
Sbjct: 37 VDAN----FSTDSSLELWSLLAADSEKPI-------ASLQVDSKFND----LDWSHNNKI 81
Query: 1150 LYASG-EVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQVHGGQLAAGFVDGSVRL 1206
+ A + S+ L+ + +N + S S+ + + LA+G +G + +
Sbjct: 82 I-AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140
Query: 1207 YDVRTPDMLVCSTRPHTQQV-----ERVVGISFQP 1236
+D+ + P T + V+ +++
Sbjct: 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ 175
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 30/279 (10%), Positives = 81/279 (29%), Gaps = 31/279 (11%)
Query: 463 LPIVLQVLLSQCH---RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQ 519
+P + L +F + L + G P + LL + + +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 520 ILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM---AAFVLAVIVDGH 576
V+ I + + ++K G + L + + L+ +
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 636
++ ++ L +P L C + L + E + +
Sbjct: 222 NPAPPLDAVEQILPTLVRLLH-------HNDPEVLADSCWAISYLTDGPNERIEMVVKKG 274
Query: 637 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEIS--II 694
V LL + + A+ ++G ++ DE+ + I +
Sbjct: 275 VVPQLVKLLGATELPIVTPALRAIGNIV----------------TGTDEQTQKVIDAGAL 318
Query: 695 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
+++++ ++ E ++ G + ++ +
Sbjct: 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 44/224 (19%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LL 1097
F ++VA R+ I++ L +N V+ + + +L
Sbjct: 177 FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG-------AVSSICIDEECCVL 229
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
++ + G I IW D + + + G + V + + S + +
Sbjct: 230 ILGTTRGIIDIW---DIRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283
Query: 1158 SIMLWDLEKEQ---------------------QMVNPIPSSSDCSISALTASQVHGGQ-L 1195
+ +W+ K + + + S++AL+ V + L
Sbjct: 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL 343
Query: 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1239
S+ ++ + ++ + + L
Sbjct: 344 LTDEATSSIVMFSLNELSSSKAVI-SPSRFSDVFIPTQVTANLT 386
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 29/209 (13%), Positives = 78/209 (37%), Gaps = 27/209 (12%)
Query: 1046 FSP----IVVAADENERIKIWN---YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1098
SP ++ + IKIWN + +S +D ++++ ++ +
Sbjct: 71 VSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSS-TVTQITMIP--NFDAFA 127
Query: 1099 VASCNGNIRIWK-DYDQKDKQKLVTAFSSIQ--------GHKPGVRCSNVVVDWQQQSGY 1149
V+S +G I + K ++ Q++ + I+ ++ VR + +
Sbjct: 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM----RAFVNEEKS 183
Query: 1150 LYASGEV-SSIMLWDLEKEQQM-VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207
L + S ++++D+ +++ + ++S++ + L G G + ++
Sbjct: 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDE-ECCVLILGTTRGIIDIW 241
Query: 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
D+R ++ + + V F
Sbjct: 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYG 270
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 40/238 (16%)
Query: 1046 FSP---IVVAADENERIKIWN-----------YEEDTLLNSFDNHDFPDKGISKLCLVNE 1091
P + ++ +I + + + + +F +
Sbjct: 119 MIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178
Query: 1092 LD-VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150
+ SLL+ + + I+ + Q + V + +D + L
Sbjct: 179 NEEKSLLVALTNLSRVIIFDIRTLERLQII-----ENSPRHGAVSS--ICIDEECC--VL 229
Query: 1151 YASGEVSS---IMLWDLEKEQQMVNPIPSSSDCSISALTA---SQVHGGQLAAGFVDGSV 1204
G ++ I +WD+ + ++ I+ + + + G +
Sbjct: 230 -ILG--TTRGIIDIWDI-RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285
Query: 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIYFLAS 1262
+++ + +Q F P + C + + ++
Sbjct: 286 TIWNFVKGH-CQYAFINSDEQPSME---HFLP--IEKGLEELNFCGIRSLNALSTISV 337
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 24/203 (11%), Positives = 65/203 (32%), Gaps = 30/203 (14%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LL 1097
+ P ++++A + I +W+ + + PD + +D S L+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-------TIYSVDWSRDGALI 191
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
+ + +R+ + + + G R + V G + +G
Sbjct: 192 CTSCRDKRVRVI---EPRKGTVVAEKD----RPHEGTRPVHAVFVS---EGKILTTGFSR 241
Query: 1158 S----IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
+ LWD + ++ ++ + + G D S+R +++ +
Sbjct: 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301
Query: 1214 MLVCSTRPHTQQVERVVGISFQP 1236
+ + + G+ + P
Sbjct: 302 PFLHYLSMFSSKES-QRGMGYMP 323
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 10/134 (7%)
Query: 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152
+ +++ S + + +W+ D L +++GH V V W + +
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI----VAWHPTAQNVLL 148
Query: 1153 SGEVSS---IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
S I++WD+ ++ P +I ++ S+ G + D VR+ +
Sbjct: 149 SA--GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEP 205
Query: 1210 RTPDMLVCSTRPHT 1223
R ++ RPH
Sbjct: 206 RKGTVVAEKDRPHE 219
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 11/147 (7%)
Query: 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1154
SLLL+ S +G++ ++K Q L+ + +K + C ++ + G
Sbjct: 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLC----CNFIDNTDLQIYVG 75
Query: 1155 EV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
V I+ DL ++++ ++ + +L A DG + + D R
Sbjct: 76 TVQGEILKVDLIGSPSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 1214 MLVCSTRPHTQQVERVVGISFQPGLDP 1240
V + + +V F +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNS 160
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 15/161 (9%)
Query: 1050 VVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1108
VV +N + ++ + + + HD +S ++ + +++ + +G I
Sbjct: 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVDGYFYI 337
Query: 1109 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1168
+ + KD T G VV + Q S SS+
Sbjct: 338 F---NPKDIATTKT----TVSRFRGSNLVPVV--YCPQIYSYIYSDGASSLRAVPSRAAF 388
Query: 1169 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
+ + + +I+A+ S++H + AG DGS+ + +
Sbjct: 389 AVHPLVSRET--TITAIGVSRLHP-MVLAGSADGSLIITNA 426
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 7e-07
Identities = 18/194 (9%), Positives = 51/194 (26%), Gaps = 19/194 (9%)
Query: 1049 IVVAADENERIKIWN-YEEDTLLNSFDNHDFPDKGIS----KLCLVNELDVSLLLVASCN 1103
+ + I + T ++ F + P +S + + L + ++ N
Sbjct: 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN 286
Query: 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLW 1162
G + + D + Q H + +V + + ++ V ++
Sbjct: 287 GFVAEFDLTDPEVPS------FYDQVHDSYIL--SVSTAYSDFEDTVVSTVAVDGYFYIF 338
Query: 1163 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222
+ + + ++ + S+R R + P
Sbjct: 339 NPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAA----FAVHPL 393
Query: 1223 TQQVERVVGISFQP 1236
+ + I
Sbjct: 394 VSRETTITAIGVSR 407
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 17/154 (11%), Positives = 41/154 (26%), Gaps = 12/154 (7%)
Query: 1090 NELDVSLLLVASCNGNIRIWKDYDQKDKQ----KLVTAFSSIQGHKPGVRCSNVVVDWQQ 1145
V L S G I + D ++ + + +
Sbjct: 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL----- 275
Query: 1146 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA-SQVHGGQLAAGFVDGSV 1204
+ + + +DL + +S TA S ++ VDG
Sbjct: 276 SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335
Query: 1205 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1238
+++ + + + +V + + P +
Sbjct: 336 YIFNPKDIATTKTTV--SRFRGSNLVPVVYCPQI 367
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 3e-04
Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 8/144 (5%)
Query: 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160
+ I+I+K V G ++ G L + +I
Sbjct: 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTIN 238
Query: 1161 LWDLEKEQQMV-------NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
++ V P + S T + + GF +G V +D+ P+
Sbjct: 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE 298
Query: 1214 MLVCSTRPHTQQVERVVGISFQPG 1237
+ + H + V
Sbjct: 299 VPSFYDQVHDSYILSVSTAYSDFE 322
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 5e-07
Identities = 31/247 (12%), Positives = 74/247 (29%), Gaps = 65/247 (26%)
Query: 1030 WDTRFEKGTKTALLQP--------FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDF 1078
W KG + F+ ++ D+ R+ I+ E++ + S ++
Sbjct: 12 WCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY 71
Query: 1079 P--------------------DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
++ I+K+ + + + + L+++ + I++WK ++ +
Sbjct: 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRP 131
Query: 1119 KLVTAFSSIQGHKPGVRCSN-----------VVVDWQQQS-----------------GYL 1150
+ ++ + +V ++
Sbjct: 132 EGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191
Query: 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSD------CSISALTASQVHGGQLAAGFVDGSV 1204
Y S + I LW LE + N + I+A G++
Sbjct: 192 YLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251
Query: 1205 RLYDVRT 1211
RL D+R
Sbjct: 252 RLCDMRA 258
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
FS + + ++ ++++ E L H+ LC D S + S
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE-----VLCCAFSSDDSYIATCSA 677
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIML 1161
+ ++IW D + + T H V C + + L A+G + L
Sbjct: 678 DKKVKIW---DSATGKLVHT----YDEHSEQVNCCHFTNK---SNHLLLATGSNDFFLKL 727
Query: 1162 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
WDL +++ N + ++ S++ S LA+ DG++RL+DVR+
Sbjct: 728 WDLNQKEC-RNTMFGHTN-SVNHCRFSP-DDELLASCSADGTLRLWDVRS 774
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 9e-07
Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 32/199 (16%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----L 1096
F+ ++ + +K+W+ + N+ H VN S L
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS---------VNHCRFSPDDEL 757
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKL------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150
L S +G +R+W +++ + +++ + + V+C W +
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC----CSWSADGDKI 813
Query: 1151 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210
+ ++L+D+ + +I S + V L+++
Sbjct: 814 -IVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSP-YDHLAVIALSQYCVELWNID 870
Query: 1211 TPDMLVCSTRPHTQQVERV 1229
+ V R H V V
Sbjct: 871 SRL-KVADCRGHLSWVHGV 888
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 45/215 (20%)
Query: 1030 WDTRFEKGTKTALLQP-------FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFP 1079
W+T +K K + + F +V+A D +++ + + +
Sbjct: 909 WET--KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ--- 963
Query: 1080 DKGISKLCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1135
V+ +S + +G I+I + + + + GHK VR
Sbjct: 964 ---------VSCCCLSPHLEYVAFGDEDGAIKII---ELPNNRVFSS----GVGHKKAVR 1007
Query: 1136 CSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195
+ + L +S E S I +W+ + + + + + ++ +L
Sbjct: 1008 H----IQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQE-TVKDFRLL--QDSRL 1058
Query: 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
+ DG+V++++V T + H V
Sbjct: 1059 LSWSFDGTVKVWNVITGRIER-DFTCHQGTVLSCA 1092
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 22/201 (10%), Positives = 61/201 (30%), Gaps = 29/201 (14%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC----LVNELDVS--- 1095
FSP ++ + + +++W+ S + F +V S
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155
++ + + ++ D L GH ++ D+ +
Sbjct: 811 DKIIVAAKNKVLLF---DIHTSGLLAEIH---TGHHSTIQY----CDFSPYDHLAVIALS 860
Query: 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1215
+ LW+++ + V + + S G D ++R+++ +
Sbjct: 861 QYCVELWNIDSRLK-VADCRGHLS-WVHGVMFSP-DGSSFLTASDDQTIRVWETKKVC-- 915
Query: 1216 VCSTRPHTQQVERVVGISFQP 1236
++ + + + + FQ
Sbjct: 916 -KNSAIVLK---QEIDVVFQE 932
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 27/173 (15%), Positives = 49/173 (28%), Gaps = 27/173 (15%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LLL 1098
S + ++ KIW+++ + L+ H+ V S LL
Sbjct: 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC---------VRCSAFSLDGILLA 1143
Query: 1099 VASCNGNIRIW--KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
NG IRIW D ++ H V V + S L S
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD----VCFSPDSKTL-VSAG- 1197
Query: 1157 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
+ W++ ++ ++ + S G + + V
Sbjct: 1198 GYLKWWNVATGDS-SQTFYTNGT-NLKKIHVSP-DFRTYVTVDNLGILYILQV 1247
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 30/198 (15%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
FS + ++++KIW+ L++++D H + ++ N+ + LL S
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGSN 721
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162
+ +++W D K+ T + GH V + L + ++ LW
Sbjct: 722 DFFLKLW---DLNQKECRNT----MFGHTNSVNH----CRFSPDDELLASCSADGTLRLW 770
Query: 1163 DLEKEQQ-----------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
D+ + P + + + S G ++ + V L+D+ T
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAAKNK-VLLFDIHT 828
Query: 1212 PDMLVCSTRPHTQQVERV 1229
+L H ++
Sbjct: 829 SGLLAEIHTGHHSTIQYC 846
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 30/172 (17%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS---LLLV 1099
F+ ++++ E+ I++WN++ + H V + + LL
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQET---------VKDFRLLQDSRLLS 1060
Query: 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159
S +G +++W + + H+ V + ++ +
Sbjct: 1061 WSFDGTVKVW---NVITGRIERD----FTCHQGTVLS----CAISSDATKFSSTSADKTA 1109
Query: 1160 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
+W + ++ + + C + S G LA G +G +R+++V
Sbjct: 1110 KIWSFDLLSP-LHELKGHNGC-VRCSAFSL-DGILLATGDDNGEIRIWNVSD 1158
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 23/176 (13%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVS----L 1096
S + V ++ ++ ++ ++ H + + S
Sbjct: 456 LSNDKQFVAVGGQDS-KVHVYKLSGASVSEVKTIVHPAE---------ITSVAFSNNGAF 505
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L+ + + + + +L +S H V C V W + L A+G
Sbjct: 506 LVATDQSRKVIPY---SVANNFELAH-TNSWTFHTAKVAC----VSWSPDNVRL-ATG-- 554
Query: 1157 S---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209
S S+++W++ K I + S ++ + + D +++ ++V
Sbjct: 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 32/191 (16%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSF-DNHDFPDKGISKLCLVNELDVS---LLL 1098
S + +AD I W+ F D H ++ + + L
Sbjct: 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---------TMITGIKTTSKGDLF 382
Query: 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1158
S + ++++ A V D G + +
Sbjct: 383 TVSWDDHLKVVPAGGSGVDSSKAVA----NKLSSQPLGLAVSAD-----GDIAVAACYKH 433
Query: 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1218
I ++ K ++ SS ++S +A G D V +Y + +
Sbjct: 434 IAIYSHGKLTEVPISYNSSC-VALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVK 486
Query: 1219 TRPHTQQVERV 1229
T H ++ V
Sbjct: 487 TIVHPAEITSV 497
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 21/181 (11%), Positives = 49/181 (27%), Gaps = 29/181 (16%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LL 1097
F P +++ ++ + I+ ++F H V+ + + L
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF---------VHSVRYNPDGSLF 205
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
+G I ++ D H V + W + AS S
Sbjct: 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG----LTWSPDGTKI-ASA--S 258
Query: 1158 ---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM 1214
+I +W++ + + L L + +G + + +
Sbjct: 259 ADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIW-TKQALVSISANGFINFVNPELGSI 316
Query: 1215 L 1215
Sbjct: 317 D 317
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 27/192 (14%), Positives = 46/192 (23%), Gaps = 28/192 (14%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1102
+V+ N I N E ++ H +K I+ L D L A
Sbjct: 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGH---NKAITALSS--SADGKTLFSADA 344
Query: 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1162
G+I W D H + G L+ + +
Sbjct: 345 EGHINSW---DISTGISNRV---FPDVHATMITGIKTTSK-----GDLFTVSWDDHLKVV 393
Query: 1163 DL-EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221
+ + L S G +A + +Y + P
Sbjct: 394 PAGGSGVDSSKAVANKLSSQPLGLAVS--ADGDIAVAACYKHIAIYSHGK-----LTEVP 446
Query: 1222 HTQQVERVVGIS 1233
+ V +S
Sbjct: 447 ISYNS-SCVALS 457
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 53/314 (16%), Positives = 87/314 (27%), Gaps = 30/314 (9%)
Query: 478 RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537
AL L A + P V+KLL + + LAL +
Sbjct: 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388
Query: 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQ 597
L + G ++ L ++R V+G R + G +H+ + +
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448
Query: 598 G-SMPNDAQTEPLFLQWL-----------CLCLGKLWEDFTEAQTIGRRADAPAIYVPLL 645
+ T PLF+Q L L +L +D A+ I A A LL
Sbjct: 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE-AEGATAPLTELL 507
Query: 646 SEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGS 705
V A L + D + D K R + + SL
Sbjct: 508 HSRNEGVATYAAAVLFRM-------SEDKPQ-------DYKKRLSVELTSSLFR---TEP 550
Query: 706 PLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQI 765
+ L A G + +Y S + + G
Sbjct: 551 MAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGGHHPGAD 610
Query: 766 GPLTRVGNEAVVRD 779
P+ + + +D
Sbjct: 611 YPVDGLPDLGHAQD 624
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 41/268 (15%)
Query: 498 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGH-AYFIRFLDSME 556
L+ P + KLL + + + L+ ++ + +++ + +R + +
Sbjct: 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 557 AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616
R A L + HR G A ++G I +K L +
Sbjct: 70 DVETARC-TAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFY------AIT 120
Query: 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVE 676
L L A+ R A V LL++ + A L L
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------------- 167
Query: 677 GDEECDDDEKIRAEIS---IIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
+++ + I ++L+ ++ + + + + +I A
Sbjct: 168 ----AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 223
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIV 761
G + +L T S +V
Sbjct: 224 ----------GGMQALGLHLTDPSQRLV 241
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 37/205 (18%), Positives = 78/205 (38%), Gaps = 35/205 (17%)
Query: 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
+++ A + I+ +A I+AG + ++ L E L+ L
Sbjct: 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALW------AL 78
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD 678
+ E A A V LLS P ++ A+++L +
Sbjct: 79 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-------------- 124
Query: 679 EECDDDEKIRAEIS--IIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSK 736
+E+I+A I + +L+ ++S + + E AL+ A G + ++++ A
Sbjct: 125 --SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--- 179
Query: 737 PQSNSLLGSLPSLAHIKTTGSGSIV 761
G+LP+L + ++ + I+
Sbjct: 180 -------GALPALVQLLSSPNEQIL 197
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 28/181 (15%)
Query: 1046 FSP---IVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1101
S + D + IWN E + + S H +N +D L
Sbjct: 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI---------INAIDGIGGLGIG 126
Query: 1102 CNGN----------IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1151
+++W D + K V +QG + + Q +
Sbjct: 127 EGAPEIVTGSRDGTVKVW---DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV 183
Query: 1152 ASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1210
+G + I L+DL + CS+ + +L A ++G ++D+R
Sbjct: 184 CAGYDNGDIKLFDLRNMALRWETNIKNGVCSL-EFDRKDISMNKLVATSLEGKFHVFDMR 242
Query: 1211 T 1211
T
Sbjct: 243 T 243
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 24/156 (15%)
Query: 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV---DWQQQSGYL 1150
V++ A G I+++ + D + L ++C
Sbjct: 34 VTMGNFARGTGVIQLY-EIQHGDLKLLRE-----IEKAKPIKCGTFGATSLQ-----QRY 82
Query: 1151 YASG-EVSSIMLWDLEKEQQMVNPIP--SSSDCSISALTASQVH--GGQLAAGFVDGSVR 1205
A+G ++ +W+LE + V + +I + + ++ G DG+V+
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 1206 LYDVRTPDMLVCSTRP---HTQQVERVV--GISFQP 1236
++D R D V + P ++ V G ++
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ 178
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 41/213 (19%)
Query: 1046 FSP----IVVA---ADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLL 1097
+ P V A I+++ + L + P K + L L
Sbjct: 26 WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQQRYL 83
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-----GYLYA 1152
GN+ IW + + + V S++GHK + +D
Sbjct: 84 ATGDFGGNLHIW---NLEAPEMPVY---SVKGHKEIINA----IDGIGGLGIGEGAPEIV 133
Query: 1153 SGEVS---SIMLWDLEKEQQMVNPIP-----SSSDCSISALTASQVHGGQ-LAAGFVDGS 1203
+G S ++ +WD ++ V + + DC A + + + AG+ +G
Sbjct: 134 TG--SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 1204 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
++L+D+R M + V + F
Sbjct: 192 IKLFDLRN--MALRWETNIKN---GVCSLEFDR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 20/175 (11%), Positives = 44/175 (25%), Gaps = 37/175 (21%)
Query: 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618
+R + AF+L I + E + L ++ L
Sbjct: 68 YIRRDIGAFILGQI--KICKKCEDNVFNILNNMALND----------KSACVRATAIEST 115
Query: 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD 678
+ + + VR + F++ + D + +
Sbjct: 116 AQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND------KATIPLL 164
Query: 679 EEC--DDDEKIRAEI------------SIIRSLLTVVSDGSPLVRAEVAVALARF 719
D + +R I + ++ D + VR E + L+
Sbjct: 165 INLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 628 AQTIGR----RADAPAIYVPL----LSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDE 679
A +G+ + ++ L L++ VRA+A+ S VE +
Sbjct: 75 AFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 134
Query: 680 EC--DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHL 727
D +R + I L+ ++ D + VR A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR 194
Query: 728 KSIAAA 733
Sbjct: 195 DCFVEM 200
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 29/111 (26%)
Query: 627 EAQTIGRRADAPAIYVP----LLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECD 682
++ G + LL + R S+ L G ++
Sbjct: 10 ASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLR-------------GGQD-- 54
Query: 683 DDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
+R + SD + + R A L + K
Sbjct: 55 ----------AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL 95
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 16/161 (9%), Positives = 45/161 (27%), Gaps = 26/161 (16%)
Query: 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152
D+ + + ++ + + + H + +
Sbjct: 92 DLLFYRITREDETKKVIFEKLDLLDSDM-------KKHSFWALK--WGASNDRLLSHRLV 142
Query: 1153 SGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG--------------GQLAA 1197
+ +V + +W N + + ++ + G +A
Sbjct: 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIAT 202
Query: 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQ--VERVVGISFQP 1236
GF +G+V++ ++ T L H+ + + F P
Sbjct: 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 20/188 (10%), Positives = 55/188 (29%), Gaps = 41/188 (21%)
Query: 1046 FSP----IVVAADENERIKIWN---YEEDTLLNSFDNHD-------F-PDKGISKLCLVN 1090
+ ++ + + ++ + F PD G
Sbjct: 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-------- 219
Query: 1091 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1150
++ + I + D K + L I+ + V+ + W
Sbjct: 220 ----EFVITVGSDRKISCF---DGKSGEFLKY----IEDDQEPVQGGIFALSWLD--SQK 266
Query: 1151 YASGEVS---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1207
+A+ +I +WD+ + + + G++ + +DG++ Y
Sbjct: 267 FATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324
Query: 1208 DVRTPDML 1215
++ ++L
Sbjct: 325 ELGHDEVL 332
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 30/136 (22%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNS-FDNHD-------F-PDKGISKLCLVNELD 1093
SP + A D +I +++ + + S + + P K E++
Sbjct: 496 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA---EKGANEEEIE 552
Query: 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLY 1151
L+ S + NI I+ K K++ A HK GV + W L
Sbjct: 553 EDLVATGSLDTNIFIY---SVKRPMKIIKAL---NAHKDGVNN----LLW---ETPSTLV 599
Query: 1152 ASGEVSSIMLWDLEKE 1167
+SG + I W++ E
Sbjct: 600 SSGADACIKRWNVVLE 615
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 21/199 (10%), Positives = 60/199 (30%), Gaps = 28/199 (14%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLLNSFDNH-DFPDKGISKLCLVNELDVS---- 1095
FSP + + DE+ ++ +W + D NS + + + ++ ++++
Sbjct: 72 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG--PISDISWDFEGR 129
Query: 1096 LLLVASC--NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1153
L V + L + GH + +Q +
Sbjct: 130 RLCVVGEGRDNFGVFI---SWDSGNSLGE----VSGHSQRINA----CHLKQSRPMRSMT 178
Query: 1154 G-EVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
+ S++ + + + + + S G + D + +D ++
Sbjct: 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 238
Query: 1212 PDMLVCSTRPHTQQVERVV 1230
+ + + V+ +
Sbjct: 239 GE-FLKYIEDDQEPVQGGI 256
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 47/201 (23%)
Query: 1046 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGI--SKLCLVNELDVSLLLV 1099
FSP V+ + +I ++ + L ++ P +G + ++ LD
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA----LSWLDSQKFAT 269
Query: 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1159
+ IR+W D + + K + V V +G + + ++
Sbjct: 270 VGADATIRVW---DVTTSKCVQK----WTLDKQQLGNQQVGVVATG-NGRIISLSLDGTL 321
Query: 1160 MLWDLEKEQQM--------------VNPIPS-SSDCSI---SALTASQVH---------- 1191
++L ++ + VNP+ S S D I S+ + Q H
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381
Query: 1192 -GGQLAAGFVDGSVRLYDVRT 1211
+ ++ D ++++ +
Sbjct: 382 KAQEYSSISWDDTLKVNGITK 402
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 39/220 (17%)
Query: 1027 IACWDTRFEKGTKTALLQP----FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFP 1079
+ QP + V +++ + I ++ S +
Sbjct: 395 LKVNGIT----KHEFGSQPKVASANNDGFTAVLTNDD-DLLILQSFTGDIIKSVRLNS-- 447
Query: 1080 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNV 1139
S + L L + ++ D + L T +
Sbjct: 448 --PGSAVSLSQNYVAVGLEEGNTIQVFKLS---DLEVSFDLKT------PLRAKPSY--- 493
Query: 1140 VVDWQQQSGYLYASGEVS-SIMLWDLEKEQQMVNPIPSSSDC--SIS------ALTASQV 1190
+ Y+ A+G+V I+L+DL+ + + + +IS ++
Sbjct: 494 -ISISPSETYI-AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551
Query: 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
+A G +D ++ +Y V+ P ++ + H V ++
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL 591
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 13/125 (10%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC-----SNVVVDWQQQS 1147
+ + G I ++ D + ++ + + + + + ++
Sbjct: 499 SETYIAAGDVMGKILLY---DLQSREVKTSRW---AFRTSKINAISWKPAEKGANEEEIE 552
Query: 1148 GYLYASGEVS---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1204
L A+G S +I ++ +++ +++ + + D ++ L L + D +
Sbjct: 553 EDLVATG--SLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWE--TPSTLVSSGADACI 607
Query: 1205 RLYDV 1209
+ ++V
Sbjct: 608 KRWNV 612
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 33/233 (14%), Positives = 69/233 (29%), Gaps = 58/233 (24%)
Query: 1030 WDTRFEKGTKTALLQ---------PFSP----IVVAADENERIKIWNYEEDTLLNSFDNH 1076
+ K L ++ + + ++ +W L + D H
Sbjct: 17 YFQ--GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDS-SASVWYSLNGERLGTLDGH 73
Query: 1077 DFPDKGISKLCLVNELDVS----LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1132
+ +DV + S + +I++W D + Q + T + P
Sbjct: 74 TGT---------IWSIDVDCFTKYCVTGSADYSIKLW---DVSNGQCVAT----WKSPVP 117
Query: 1133 GVRC------SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186
V+ N + + SI ++++E++ S + +T
Sbjct: 118 -VKRVEFSPCGNYFL-----AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171
Query: 1187 ASQVH----------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229
+ G + AG DG + YDV V S H + + +
Sbjct: 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 48/370 (12%), Positives = 101/370 (27%), Gaps = 59/370 (15%)
Query: 498 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEA 557
L+ P + KLL + + ++ + S + + +R + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 558 YPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617
R A L + HR G A ++G I +K L +
Sbjct: 74 VETARC-TAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFY------AITT 124
Query: 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEG 677
L L A+ R A V LL++ + A L L
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-------------- 170
Query: 678 DEECDDDEKIRAEIS---IIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAY 734
+++ + I ++L+ ++ + + + + +I A
Sbjct: 171 ---AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA- 226
Query: 735 SKPQSNSLLGSLPSLAHIKTTGSGSIV---SSQIGPLTRVGNEAVVRDGRVSTSSPLANA 791
G + +L T S +V + L+ + +G + L
Sbjct: 227 ---------GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL---GTLVQL 274
Query: 792 GLMHGSP------------LSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVL 839
L L+ ++ ++ + G +V + I +
Sbjct: 275 -LGSDDINVVTCAAGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLRAGDREDITEPAIC 332
Query: 840 AMCTLAKDPS 849
A+ L
Sbjct: 333 ALRHLTSRHQ 342
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 35/121 (28%)
Query: 628 AQTIGRRADAPAI--YVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC---- 681
A +G+ D A+ + L + VR +A F+LG + GDE
Sbjct: 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI-------------GDERAVEPL 148
Query: 682 -----DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARF-AFGHKQ 725
D+D +R + ++ + G+ R L +F H
Sbjct: 149 IKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
Query: 726 H 726
H
Sbjct: 209 H 209
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 42/151 (27%)
Query: 628 AQTIGRRADAPAIY--VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC---- 681
A +G+ D A+ + L + VR SA +LG + GDE
Sbjct: 71 ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-------------GDERAVEPL 117
Query: 682 -----DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQH 726
D+D +R + L+ + D VR A AL G ++
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE--IGGERV 175
Query: 727 LKSIAAAYSKPQSN------SLLGSLPSLAH 751
++ + L + S H
Sbjct: 176 RAAMEKLAETGTGFARKVAVNYLETHKSFNH 206
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 36/128 (28%)
Query: 627 EAQTIGRRADAPAI--YVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC--- 681
E RAD + Y+ L + VR +A ++LG + GDE
Sbjct: 8 EKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI-------------GDERAVEP 54
Query: 682 ------DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQ 725
D+D +R + L+ + D VR AVAL + G ++
Sbjct: 55 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ--IGDER 112
Query: 726 HLKSIAAA 733
++ + A
Sbjct: 113 AVEPLIKA 120
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 35/205 (17%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLLNS--FDNHDF--------PDKGISKLCLVN 1090
++P +++ A + ++ + ++E+ + D H P
Sbjct: 109 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 1091 ELDVSLLLVASCNGNIRIWK-DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW--QQQS 1147
+ + + ++IWK + D + T ++GH VR V W
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRD----VAWSPTVLL 220
Query: 1148 GYLYASGEVS---SIMLWDLEKEQQMVNPIPSSS---DCSISALTASQVHGGQLAAGFVD 1201
AS S + ++W + EQ + + S + G LA D
Sbjct: 221 RSYLASV--SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLALSGGD 277
Query: 1202 GSVRLYDVRTPDMLVCSTRPHTQQV 1226
V L+ + H
Sbjct: 278 NKVTLWKENLEGKWEPAGEVHQGGG 302
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 19/196 (9%), Positives = 64/196 (32%), Gaps = 16/196 (8%)
Query: 1046 FSP----IVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA 1100
+ ++ AD ++ + +++ + + K + + + D + +++A
Sbjct: 110 LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIA 167
Query: 1101 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1160
G++ +++ GH + +++ D ++ S I
Sbjct: 168 DKFGDVYSIDINSIPEEKFTQEPI---LGHVSMLTDVHLIKD-SDGHQFIITSDRDEHIK 223
Query: 1161 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220
+ + + + +S++ + L + D + +D +T L ST
Sbjct: 224 ISHYPQCFIVDKWLFGHKH-FVSSICCGK--DYLLLSAGGDDKIFAWDWKTGKNL--STF 278
Query: 1221 PHTQQVERVVGISFQP 1236
+ ++ +
Sbjct: 279 DYNSLIKPYLNDQHLA 294
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 42/150 (28%)
Query: 628 AQTIGRRADAPAIY--VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC---- 681
A +G+ D A+ + L + VR SA +LG + GDE
Sbjct: 66 ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-------------GDERAVEPL 112
Query: 682 -----DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQH 726
D+D +R + L+ + D VR A AL G ++
Sbjct: 113 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE--IGGERV 170
Query: 727 LKSIAAAYSKPQSN------SLLGSLPSLA 750
++ + L + SL
Sbjct: 171 RAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 36/127 (28%)
Query: 628 AQTIGRRADAPAI--YVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC---- 681
+ D + Y+ L + VR +A ++LG + GDE
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKI-------------GDERAVEPL 50
Query: 682 -----DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQH 726
D+D +R + L+ + D VR AVAL + G ++
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ--IGDERA 108
Query: 727 LKSIAAA 733
++ + A
Sbjct: 109 VEPLIKA 115
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 6e-05
Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 53/250 (21%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLLN--SFDNHDF--------PDKGISKLCLVN 1090
++P +++ A + ++ + ++E+ + D H P
Sbjct: 107 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 1091 ELDVSLLLVASCNGNIRIWK-DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW--QQQS 1147
+ + + ++IWK + D + T ++GH VR V W
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRD----VAWSPTVLL 218
Query: 1148 GYLYASGEVS---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH------------G 1192
AS S + ++W + + L + G
Sbjct: 219 RSYLASV--SQDRTCIIWTQD----------NEQGPWKKTLLKEEKFPDVLWRASWSLSG 266
Query: 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPS 1252
LA D V L+ + H G + D N
Sbjct: 267 NVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSE 326
Query: 1253 FSDLIYFLAS 1262
+D I
Sbjct: 327 CNDEIDNAKL 336
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 48/194 (24%)
Query: 1045 PFSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----L 1096
S +V A + R+ ++ + ++ D + D + L
Sbjct: 28 WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPL 87
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
L VA G IRI + Q + GH + + + + L S
Sbjct: 88 LAVAGSRGIIRII---NPITMQCIKH----YVGHGNAINE----LKFHPRDPNLLLSV-- 134
Query: 1157 S---SIMLWDLEKEQQMV---------NPIPS---SSDCSISALTASQVHGGQLAAGFVD 1201
S ++ LW+++ + + + + S G ++ + +D
Sbjct: 135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL------------GEKIMSCGMD 182
Query: 1202 GSVRLYDVRTPDML 1215
S++L+ + + M+
Sbjct: 183 HSLKLWRINSKRMM 196
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 59/199 (29%)
Query: 1059 IKIWNYEEDTLLNSFDNH-DF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116
+K+W ++N+ D+ P+K + I
Sbjct: 185 LKLWRINSKRMMNAIKESYDYNPNKTNR---------------PFISQKIHFP------- 222
Query: 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS---SIMLWDLEKEQQMVNP 1173
FS+ H+ V C V W G L S S +I+ W K + ++
Sbjct: 223 ------DFSTRDIHRNYVDC----VRW---LGDLILSK--SCENAIVCWKPGKMEDDIDK 267
Query: 1174 IPSSSDCSISALTASQVH--------------GGQLAAGFVDGSVRLYDVRTPDMLVCST 1219
I S+ +++ L LA G G + ++D+ D
Sbjct: 268 I-KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326
Query: 1220 RPHT--QQVERVVGISFQP 1236
T + + SF
Sbjct: 327 TTLTHHKCGAAIRQTSFSR 345
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 45/211 (21%)
Query: 1044 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-----DVSLLL 1098
P++ A I+I N + + H +NEL D +LLL
Sbjct: 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA---------INELKFHPRDPNLLL 132
Query: 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1158
S + +R+W + + + F ++GH+ V D+ + + G S
Sbjct: 133 SVSKDHALRLW---NIQTDTLVAI-FGGVEGHRDEVLS----ADYDLLGEKIMSCGMDHS 184
Query: 1159 IMLWDLEKEQQMVNPIPS---SSDCSISA----------LTASQVH----------GGQL 1195
+ LW + ++ M S + + + + +H G +
Sbjct: 185 LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI 244
Query: 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1226
+ + ++ + + + +P V
Sbjct: 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEI- 691
+ +++ VR +L + D F+ + + ++D +IR
Sbjct: 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLS-----NEDWRIRGAAA 63
Query: 692 ---------SIIRSLLTVVSDGSPLVRAEVAVALARFA 720
+ L+ ++ D S VR+ A +L +
Sbjct: 64 WIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 34/108 (31%)
Query: 631 IGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEEC--------- 681
+G A + + LS +R +A + +G DE
Sbjct: 39 MGDEA-FEPL-LESLSNEDWRIRGAAAWIIGNF-------------QDERAVEPLIKLLE 83
Query: 682 DDDEKIRAEI----------SIIRSLLTVVSDGSPLVRAEVAVALARF 719
DD +R+ + ++ + G+ R L
Sbjct: 84 DDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH 131
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 32/173 (18%)
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCL---------------VNELDVS----LLLV 1099
I++W T +++F+ + P G++ + L N L+ ++
Sbjct: 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 1100 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSS 1158
+G I + + K++ + + + +G E
Sbjct: 265 GHVSGVITVH---NVFSKEQTIQLP---SKFTCSCNS----LTVDGNNANYIYAGYENGM 314
Query: 1159 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
+ WDL + V + I+ + + G + D S++L +
Sbjct: 315 LAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIISD 365
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 31/220 (14%), Positives = 81/220 (36%), Gaps = 48/220 (21%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS----LLL 1098
F P ++++ ++ ++KIW+ ++ + + H V ++ + +L
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT---------VTDIAIIDRGRNVL 197
Query: 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY--ASGEV 1156
AS +G IR+W + + T + N + + L+ ++ +
Sbjct: 198 SASLDGTIRLW---ECGTGTTIHT----FNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250
Query: 1157 SS------------------IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198
++ I + ++ ++Q + + S ++LT + + AG
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVDGNNANYIYAG 309
Query: 1199 FVDGSVRLYDVRTPDMLVCST-RPHTQQVERVVGISFQPG 1237
+ +G + +D+R+P+ V + + F G
Sbjct: 310 YENGMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAG 346
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 31/199 (15%)
Query: 1046 FSP-----IVVAADENERIKIWNYEEDTLL--NSFDNHDF--------PDKGISKLCLVN 1090
++P +++ A + ++ + ++E+ D H P
Sbjct: 107 WAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 1091 ELDVSLLLVASCNGNIRIWK-DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW--QQQS 1147
+ + + ++IWK + D + T ++GH VR V W
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLEST----LEGHSDWVRD----VAWSPTVLL 218
Query: 1148 GYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS---DCSISALTASQVHGGQLAAGFVDGS 1203
AS + + ++W + EQ + + S + G LA D
Sbjct: 219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLALSGGDNK 277
Query: 1204 VRLYDVRTPDMLVCSTRPH 1222
V L+ + H
Sbjct: 278 VTLWKENLEGKWEPAGEVH 296
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 21/177 (11%), Positives = 53/177 (29%), Gaps = 22/177 (12%)
Query: 1044 QPFSPIVVAADENERIKIWNYEEDTLLN--------SFDNHDFPDKGISKLCLVNELDVS 1095
+ + N ++I++ + + S + + + K+ +
Sbjct: 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA--AETL 501
Query: 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155
L V+ G++ ++K + + + + +G L +
Sbjct: 502 ELAVSIETGDVVLFKYEVNQFYS------VENRPESGDLEMNFRRFSLNNTNGVLVDVRD 555
Query: 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1212
+ + V+ SA+ S + G + + GS+ L D R P
Sbjct: 556 RAPTGVRQGFMPSTAVHANKGK----TSAINNSNI--GFVGIAYAAGSLMLIDRRGP 606
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 71/243 (29%)
Query: 1046 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL---------VNELD 1093
++ +++ D +WN T++ F+ + I+ V +D
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 1094 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLY 1151
++ G I +++ ++ KL GH + +++ + L
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKL-------IGHHGPISV----LEF---NDTNKLL 262
Query: 1152 ASGEVS---SIMLWDLEKEQQMV------NPIPS------------SSDCSI---SALTA 1187
S S ++ +W I S S D S+ S
Sbjct: 263 LSA--SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 1188 SQVH-----------------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230
+ + G + A F+DG V +YD++ + S + + +
Sbjct: 321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL 380
Query: 1231 GIS 1233
I
Sbjct: 381 PIP 383
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 48/195 (24%)
Query: 1037 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD-------F-PDKGISKLCL 1088
+QPF+P + + R+K+WN + +F H+ P+ K
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPN---GKYI- 228
Query: 1089 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS- 1147
+ + + IW D + + + + +
Sbjct: 229 -----AT----GGKDKKLLIW---DILNLTYPQR----EFDAGSTINQ----IAF---NP 265
Query: 1148 -GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA---SQVH-------GGQLA 1196
A G + +++L + + + + + Q G +L
Sbjct: 266 KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325
Query: 1197 AGFVDGSVRLYDVRT 1211
AGF DG +R + T
Sbjct: 326 AGFTDGVIRTFSFET 340
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 27/159 (16%)
Query: 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1154
V S I + ++Q++ + + + + +DW + L A+G
Sbjct: 113 DKFAVGSGARVISVC-YFEQENDWWVSKHL--KRPLRSTILS----LDWHPNNVLL-AAG 164
Query: 1155 EVSS---IMLWDLEKEQQMVNPIPSSSDCSISALT-------ASQVH-------GGQLAA 1197
+ + P S + T VH G LA
Sbjct: 165 --CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY 222
Query: 1198 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236
D SV + P+ + + + +
Sbjct: 223 AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
+K+W+ E +T L++ H + L D ++ S + +IR+W D +
Sbjct: 261 VKVWDPETETCLHTLQGHT---NRVYSLQF----DGIHVVSGSLDTSIRVW---DVETGN 310
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSS 1177
+ T + GH+ ++ + SG S++ +WD++ Q +
Sbjct: 311 CIHT----LTGHQSLTSG----MEL---KDNILVSGNADSTVKIWDIKTGQCLQ--TLQG 357
Query: 1178 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT----PDMLVCSTRPHTQQVERV 1229
+ SA+T Q + + DG+V+L+D++T +++ + V R+
Sbjct: 358 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 1092 LDVSLLLVASC---------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD 1142
L ++ + + +WK + F+S+ D
Sbjct: 30 LQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQD 89
Query: 1143 WQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201
+ + + W K + I+ L Q + G D
Sbjct: 90 -----RLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCL---QFEDNYVITGADD 141
Query: 1202 GSVRLYDVRT 1211
+R+YD
Sbjct: 142 KMIRVYDSIN 151
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 40/177 (22%)
Query: 1046 FSP----IVVAADEN--ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--LL 1097
+ ++ + + ++ + L + H V L ++
Sbjct: 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN---------VCSLSFQDGVV 117
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1157
+ S + ++W + LV Q H V + VV S + + S
Sbjct: 118 ISGSWDKTAKVW------KEGSLVYNL---QAHNASVWDAKVV----SFSENKFLTA--S 162
Query: 1158 ---SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
+I LW +K + +D + L G + DG ++L D+ T
Sbjct: 163 ADKTIKLWQNDKVIK--TFSGIHNDV-VRHLAVV--DDGHFISCSNDGLIKLVDMHT 214
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 17/135 (12%)
Query: 1093 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1152
++ + N+ +W T V V W +L +
Sbjct: 102 SNLNVVAVALERNVYVWNADSGSVSALAET------DESTYVAS----VKWSHDGSFL-S 150
Query: 1153 SG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1211
G + ++D+E + + + + + L+ + L++G G++ +DVR
Sbjct: 151 VGLGNGLVDIYDVESQTK-LRTMAGHQA-RVGCLSWN---RHVLSSGSRSGAIHHHDVRI 205
Query: 1212 PDMLVCSTRPHTQQV 1226
+ + + + H+ +V
Sbjct: 206 ANHQIGTLQGHSSEV 220
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 8e-04
Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 6/145 (4%)
Query: 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1154
+ ++ + I + ++ K + + + W + A
Sbjct: 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168
Query: 1155 -EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1213
SI + + + ++ +PS+ + + G QLA G +G+V Y +
Sbjct: 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK---GKQLAVGKQNGTVVQYLPTLQE 225
Query: 1214 MLVCSTRP--HTQQVERVVGISFQP 1236
V P + RV+ + +
Sbjct: 226 KKVIPCPPFYESDHPVRVLDVLWIG 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1262 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 9e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (177), Expect = 2e-14
Identities = 38/235 (16%), Positives = 63/235 (26%), Gaps = 19/235 (8%)
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
R AL LL + A D G+ V + L+ LR + +
Sbjct: 33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
Q ++ G +R LD R A F ++ +V G + V
Sbjct: 93 IQEQVLGLGALRKLLRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL-- 149
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
M Q L L E + V L+
Sbjct: 150 -----MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGD-----------EECDDDEKIRAEISIIRSLL 698
+ +L +L+ R+ E + + E+ + E+ LL
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 9e-08
Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 29/179 (16%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--------- 1095
++ + ++ +++W H + IS + +S
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 1096 ------LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149
LL S + I++W L GH VR V + +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-------VGHDNWVRG----VLFHSGGKF 261
Query: 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208
+ + + ++ +WD + ++ M ++ + +++L + + G VD +V++++
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMK--TLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 4e-07
Identities = 23/196 (11%), Positives = 65/196 (33%), Gaps = 16/196 (8%)
Query: 968 SLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPI 1027
+ + L+ + + + + ++ E
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 1028 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1087
+ G++T P +++ ++ IK+W+ L + H D + +
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH---DNWVRGVL 254
Query: 1088 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1147
+ +L + + +R+W D K+K+ + T + H+ V +D+ + +
Sbjct: 255 FHS--GGKFILSCADDKTLRVW---DYKNKRCMKT----LNAHEHFVTS----LDFHKTA 301
Query: 1148 GYLYASGEVSSIMLWD 1163
Y+ ++ +W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 26/201 (12%), Positives = 69/201 (34%), Gaps = 21/201 (10%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1104
P +V+A ++ IK+W + + +F H + + D +L+ S +
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-----MVRPNQDGTLIASCSNDQ 165
Query: 1105 NIRIWKDYDQKDKQKL---------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1155
+R+W ++ K +L ++ + + +L +
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 1156 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1215
+I +WD+ ++ + + + + G + + D ++R++D +
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHS-GGKFILSCADDKTLRVWDYKNKR-C 281
Query: 1216 VCSTRPHTQQVERVVGISFQP 1236
+ + H V + F
Sbjct: 282 MKTLNAHE---HFVTSLDFHK 299
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 7e-07
Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1044 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1103
P + + V+ + K+W+ E +F H+ I+ +C + + S +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD---INAICFFP--NGNAFATGSDD 247
Query: 1104 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1163
R++ ++ + C V + + L A + + +WD
Sbjct: 248 ATCRLFDLRADQELM---------TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 1164 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208
K + + + D +S L + G +A G D +++++
Sbjct: 299 ALKADRAG--VLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 1095 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1154
L + +C+ + ++W + +Q GH+ + + +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTF-------TGHESDINA----ICFFPNGNAFATGS 245
Query: 1155 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM 1214
+ ++ L+DL +Q+++ + C I++++ S+ G L AG+ D + ++D D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD- 303
Query: 1215 LVCSTRPHTQQVERVVGISFQP 1236
H RV +
Sbjct: 304 RAGVLAGHDN---RVSCLGVTD 322
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 0.001
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1088
G + +++A ++ +W+ + H D +S L +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVSCLGV 320
Query: 1089 VNELDVSLLLVASCNGNIRIW 1109
+ D + S + ++IW
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 8e-07
Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK--L 1086
+ + T A+ + A + +++W+ E L+ D+ + G
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 1087 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQ 1145
+V D ++ S + ++++W + +K T S V+ V Q
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1146 QSGYLYASGEVSSIMLWDLEKEQQM---------VNPIPSSSDCSISALTASQVHGGQLA 1196
Y+ + + ++ WD + + V + ++ S+ A
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP------EYNVFA 372
Query: 1197 AGFVDGSVRLYDVR 1210
G D R++ +
Sbjct: 373 TGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 2e-05
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 1097 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1156
+ S + +R+W ++L + S GHK V V + + + +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS----VVFTRDGQSVVSGSLD 275
Query: 1157 SSIMLWDLEKEQQMVNPIPSSS----------DCSISALTASQVHGGQLAAGFVDGSVRL 1206
S+ LW+L+ + +S + ++ +Q + + +G D V
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLF 334
Query: 1207 YDVRTPDMLVCSTRPHTQQVERVV---GISFQP 1236
+D ++ + + + H V V G S P
Sbjct: 335 WDKKSGN-PLLMLQGHRNSVISVAVANGSSLGP 366
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 1045 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK-------LCLVNELDVSLL 1097
VV+ + +K+WN + + + ++ L + + +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 1098 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGE 1155
L S + + W D+K L+ +QGH+ V V +
Sbjct: 324 LSGSKDRGVLFW---DKKSGNPLLM----LQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 1156 VSSIMLWDLEK 1166
+W +K
Sbjct: 377 DCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (88), Expect = 0.004
Identities = 13/142 (9%), Positives = 40/142 (28%), Gaps = 16/142 (11%)
Query: 973 STIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDT 1032
++Y+ + +++ + D L + + V+ + +
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL 1092
+++ ++ + W+ + L H + + + N
Sbjct: 315 AT---------TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH---RNSVISVAVANGS 362
Query: 1093 DVS----LLLVASCNGNIRIWK 1110
+ + S + RIWK
Sbjct: 363 SLGPEYNVFATGSGDCKARIWK 384
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 3e-06
Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 23/210 (10%)
Query: 1029 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1088
C +Q VV+ + +K+W+ E +T L++ H +
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ---- 184
Query: 1089 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1148
D ++ S + +IR+W L ++ + +
Sbjct: 185 ---FDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-------------HQSLTSGMELKDN 228
Query: 1149 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1208
L + S++ +WD++ Q + + SA+T Q + + DG+V+L+D
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 1209 VRTPDMLVCSTRPHTQQVERVV-GISFQPG 1237
++T + + + VV I
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 3e-06
Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 33/384 (8%)
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
+ QR D +N++L + S S + + W
Sbjct: 68 DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPE 127
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
++ + + + + + + ++ + + + S
Sbjct: 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 187
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIF-PYVLKLLQTTTPELRQILVFIWTKILALD 532
+ A L L+ D V + Q +R + KI++L
Sbjct: 188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247
Query: 533 KSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 592
+ A I + S E + + D EA
Sbjct: 248 YQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 305
Query: 593 LKHLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA----------- 639
+H A P+ Q L +D
Sbjct: 306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 365
Query: 640 ---IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 696
+ P R +AV + G +L E + + I + +
Sbjct: 366 VLPFIKEHIKNPDWRYRDAAVMAFGCIL--------------EGPEPSQLKPLVIQAMPT 411
Query: 697 LLTVVSDGSPLVRAEVAVALARFA 720
L+ ++ D S +VR A + R
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC 435
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 24/154 (15%)
Query: 1059 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1118
IK+WN + + + H + L++ S + IR+W
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRG-------IACLQYRDRLVVSGSSDNTIRLWD-------- 204
Query: 1119 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1178
+ +V + + + + I +WDL P +
Sbjct: 205 -----IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 1179 DCSI----SALTASQVHGGQLAAGFVDGSVRLYD 1208
++ + Q Q+ + D ++ ++D
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.003
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRA 563
P ++ L + + + I + D+S + + + GG + L S +
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQ 62
Query: 564 MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623
AA L +V + I + L+ + + Q L L L E
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK---QLTGLLWNLSSTDE 119
Query: 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDD 683
E A + +P S + R+ D
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 684 DEKIRAEISIIRSLL 698
I + + +
Sbjct: 180 MRNYSGLIDSLMAYV 194
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 1143 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1202
S G ++I +WD+ + + + G++ + +DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 1203 SVRLYDV 1209
++ Y++
Sbjct: 319 TLNFYEL 325
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1262 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.92 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.9 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.88 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.86 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.84 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.84 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.82 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.78 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.78 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.77 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.75 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.74 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.7 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.7 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.69 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.69 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.65 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.58 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.53 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.52 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.47 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.43 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.42 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.38 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.38 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.34 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.32 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.23 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.19 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.16 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.11 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.07 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.03 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.97 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.9 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.72 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.56 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.55 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.51 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.43 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.36 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.24 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.9 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.87 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.82 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.81 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.77 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.74 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.7 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.66 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.63 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.62 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.62 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.57 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.46 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.45 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.42 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.28 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.13 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.1 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.0 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.28 | |
| d1nw9b_ | 277 | Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | 95.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.95 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 94.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.73 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 94.24 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 93.91 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 93.47 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.47 | |
| g1sc3.1 | 261 | Interleukin-1beta converting enzyme (a cysteine pr | 93.2 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 90.64 | |
| g1qtn.1 | 242 | Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} | 81.19 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=8e-24 Score=187.01 Aligned_cols=206 Identities=11% Similarity=0.133 Sum_probs=160.4
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..|...|++++|+|++++|++|+.||.|+|||..+++.+..+..|. ..|++++|+ +++.++++|+.|+.+++|+.
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~~--~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYA--PSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC---SCEEEEEEC--TTSSEEEEEETTCCEEEEES
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CCEEEEEEE--CCCEEEEEECCCCEEECCCC
T ss_conf 8878988899998999999999789955563102102579972465---337756760--12114431013320101332
Q ss_pred CCCCCCCEEEEE--------------------------------------------------------------------
Q ss_conf 787885227740--------------------------------------------------------------------
Q 000836 1112 YDQKDKQKLVTA-------------------------------------------------------------------- 1123 (1262)
Q Consensus 1112 ~~~~g~~~lvsa-------------------------------------------------------------------- 1123 (1262)
............
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 206 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 22212221110013542110111111111111112445432001232211111233101576300124421268760573
Q ss_pred ------------EEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCCCCEEEEEEEC
Q ss_conf ------------0102478995001420488707999899996898099996888851357644--99999826999874
Q 000836 1124 ------------FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDCSISALTASQ 1189 (1262)
Q Consensus 1124 ------------~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~--~hs~s~ItsLs~~s 1189 (1262)
...+.+|...|.+ ++|+|++..+++++.|+.|++||++... .+..+. .+.. .++++ .++
T Consensus 207 ~v~i~d~~~~~~~~~~~~h~~~i~~----v~~~p~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~~~~~~~-~i~~~-~~s 279 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFTGHESDINA----ICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIIC-GITSV-SFS 279 (340)
T ss_dssp EEEEEETTTTEEEEEECCCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCS-CEEEE-EEC
T ss_pred EEEEEECCCCCEEEEEECCCCCEEE----EEECCCCCEEEEEECCCEEEEEEECCCC-CCCCCCCCCCCC-CEEEE-EEC
T ss_conf 6999999999488999578898589----9997998999999699969997521221-111111224457-45899-998
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEE
Q ss_conf 999999999789919999788998102320578878889399999429999899994399-559984
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1190 ~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWD 1255 (1262)
+++.++++|+.||.|++||..+++ .+..+ .+|.++|++++|+|+ +.+|++|+.| .+++||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~---~~H~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKAD-RAGVL---AGHDNRVSCLGVTDD--GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCC-EEEEE---CCCSSCEEEEEECTT--SSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCC-EEEEE---CCCCCCEEEEEEECC--CCEEEEECCCCEEEEEC
T ss_conf 999999999797989999999993-98998---489997899999089--99999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.8e-23 Score=184.43 Aligned_cols=204 Identities=10% Similarity=0.173 Sum_probs=146.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEECCCCCEEEEEEC--CCEEE
Q ss_conf 68899828999937999999996899399998899928--889407999999858999854189968999937--98299
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIR 1107 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~--l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~--DG~Ir 1107 (1262)
..|...|++++|+|+++++++|+.||.|+|||+.++.. ...+..|. +.|.+++|+ +++.++++++. +..++
T Consensus 55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s--~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKDISWD--SESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS---SCEEEEEEC--TTSCEEEEEECCSSCSEE
T ss_pred CCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf 478888899999489996722556736746631011110000134335---754332333--111000111122111111
Q ss_pred EEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 998678788522774001024789950014204887079998-9999689809999688885135764499999826999
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~-Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs 1186 (1262)
+|+... ++. ...+.+|...|.+ ++|++++.. +++++.|+.|++||+++.+ ....+..|... |+++
T Consensus 130 v~~~~~--~~~-----~~~l~~h~~~v~~----v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~-i~~v- 195 (311)
T d1nr0a1 130 VFLFDT--GTS-----NGNLTGQARAMNS----VDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKF-VHSV- 195 (311)
T ss_dssp EEETTT--CCB-----CBCCCCCSSCEEE----EEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSC-EEEE-
T ss_pred CCCCCC--CCC-----CCCCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-
T ss_conf 111111--111-----1111111111111----11121110120001122111111111111-11111111111-1112-
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCEEEEEC----CCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECC
Q ss_conf 8749999999997899199997889981023205----78878889399999429999899994399-55998443
Q 000836 1187 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR----PHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1187 ~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~----~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLr 1257 (1262)
.++++++++++|+.||.|++||.+.+. ....+. ...+|..+|++++|+|+ +.+|++|+.| .+++||++
T Consensus 196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 196 RYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPD--GTKIASASADKTIKIWNVA 268 (311)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCEEEEEECC
T ss_conf 347642212111111111000124464-112221111111002465321024788--9999999379969999999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=3.1e-23 Score=182.74 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 899828999937999999996899399998899928--889407999999858999854189968999937982999986
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~--l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
|...|.+++|+|++++|++++.|+.|+|||+.++.. ...+..|. ..|+++.|+ +++..+++|+.||.|++|+.
T Consensus 50 H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~---~~v~~i~~~--p~~~~l~~~s~d~~i~i~~~ 124 (371)
T d1k8kc_ 50 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN---RAARCVRWA--PNEKKFAVGSGSRVISICYF 124 (371)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS---SCEEEEEEC--TTSSEEEEEETTSSEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCEEECCCCCCEEEEE
T ss_conf 8998889999799999999979993999862033211001223221---100011111--11211000002576302544
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCC-----------------EEEEEE
Q ss_conf 787885227740010247899500142048870799989999689809999688885-----------------135764
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----------------QMVNPI 1174 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~-----------------~~i~ti 1174 (1262)
......... ......|...+.+ ++|+|++..+++++.|+.|++||..... ..+...
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~v~~----v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (371)
T d1k8kc_ 125 EQENDWWVC---KHIKKPIRSTVLS----LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197 (371)
T ss_dssp ETTTTEEEE---EEECTTCCSCEEE----EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ECCCCCCCC---CCCCCCCCCCCCC----CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 203343311---1001011122211----111111111000134767999840157643100122111111110112440
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 499999826999874999999999789919999788998102320578878889399999429999899994399
Q 000836 1175 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC 1249 (1262)
Q Consensus 1175 ~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd 1249 (1262)
..|... |.++ +++++++.+++|+.||.|++||.+.+. .+..+ ..|..+|.+++|+++ +.++++|+++
T Consensus 198 ~~~~~~-v~~~-~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~~v~s~~fs~d--~~~la~g~d~ 264 (371)
T d1k8kc_ 198 SSSCGW-VHGV-CFSANGSRVAWVSHDSTVCLADADKKM-AVATL---ASETLPLLAVTFITE--SSLVAAGHDC 264 (371)
T ss_dssp CCCSSC-EEEE-EECSSSSEEEEEETTTEEEEEEGGGTT-EEEEE---ECSSCCEEEEEEEET--TEEEEEETTS
T ss_pred CCCCCC-EEEE-EEECCCCCCCCCCCCCCCEEEEEECCC-CEEEE---ECCCCCCEEEEECCC--CCEEEEECCC
T ss_conf 476674-7898-751233210000147860588641012-10000---014665203654699--9799998199
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.4e-22 Score=171.85 Aligned_cols=198 Identities=13% Similarity=0.227 Sum_probs=168.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.+...+.++.|+|++.++++++.++.|++|+..+++.......|. ..|++++|+ +++..+++|+.||.|++||.+
T Consensus 139 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~---~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~ 213 (337)
T d1gxra_ 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---DGASCIDIS--NDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--TTSSEEEEEETTSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111111111111111111111111111111111111---111101234--443211223566553211111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 87885227740010247899500142048870799989999689809999688885135764499999826999874999
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g 1192 (1262)
. ++. + +. ..+...+.+ +.|++++..+++++.++.+++||++... .. ....|... |+++ .+++++
T Consensus 214 ~--~~~--~---~~-~~~~~~i~~----l~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~-~~~~~~~~-i~~v-~~s~~g 277 (337)
T d1gxra_ 214 E--GRQ--L---QQ-HDFTSQIFS----LGYCPTGEWLAVGMESSNVEVLHVNKPD-KY-QLHLHESC-VLSL-KFAYCG 277 (337)
T ss_dssp T--TEE--E---EE-EECSSCEEE----EEECTTSSEEEEEETTSCEEEEETTSSC-EE-EECCCSSC-EEEE-EECTTS
T ss_pred C--CEE--E---CC-CCCCCCEEE----EEECCCCCCCCEECCCCCCCCCCCCCCC-CC-CCCCCCCC-CCEE-EECCCC
T ss_conf 1--000--0---02-466661579----9971530300000025642111111111-00-00124565-4169-998999
Q ss_pred CEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1193 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1193 ~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
++|++|+.||.|++||...++ .+... +|...|.+++|+|+ +++|++|+.| .+++||+.|
T Consensus 278 ~~l~s~s~Dg~i~iwd~~~~~-~~~~~----~~~~~v~~~~~s~d--~~~l~t~s~D~~I~vWdl~~ 337 (337)
T d1gxra_ 278 KWFVSTGKDNLLNAWRTPYGA-SIFQS----KESSSVLSCDISVD--DKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCC-EEEEE----ECSSCEEEEEECTT--SCEEEEEETTSCEEEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCC-EEEEC----CCCCCEEEEEEECC--CCEEEEEECCCEEEEEEEEC
T ss_conf 999999489969999899997-99992----69998799999279--99999990899699997789
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.7e-22 Score=172.48 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=168.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--CEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 688998289999379999999968993999988999--288894079999998589998541899689999379829999
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg--~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
..|...|.+++|+|++++|++++.|+.|++||+... +....+..|. ..+..+.|+ +++.++++++.|+.|++|
T Consensus 94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~--~~~~~l~s~~~d~~i~~~ 168 (337)
T d1gxra_ 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA---PACYALAIS--PDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS---SCEEEEEEC--TTSSEEEEEETTSCEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCCCCCCCCCCCCC
T ss_conf 488996899998679988988612332111111111111111111111---111111111--111111111111111111
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 86787885227740010247899500142048870799989999689809999688885135764499999826999874
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s 1189 (1262)
+... ++. ......|...+.+ ++|++++..+++++.|+.+++||+++++ .+..+.. .+. |+++ .++
T Consensus 169 ~~~~--~~~-----~~~~~~~~~~v~~----l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~-~~~-i~~l-~~~ 233 (337)
T d1gxra_ 169 DLHN--QTL-----VRQFQGHTDGASC----IDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDF-TSQ-IFSL-GYC 233 (337)
T ss_dssp ETTT--TEE-----EEEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEEC-SSC-EEEE-EEC
T ss_pred CCCC--CCC-----CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCCCC-CCC-EEEE-EEC
T ss_conf 1111--111-----1111111111110----1234443211223566553211111100-0002466-661-5799-971
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 999999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1190 ~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+++..+++|+.||.+++||++..+ ... ...|...|++++|+|+ +.+|++++.| .+++||+..
T Consensus 234 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~----~~~~~~~i~~v~~s~~--g~~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 234 PTGEWLAVGMESSNVEVLHVNKPD-KYQ----LHLHESCVLSLKFAYC--GKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTSSC-EEE----ECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred CCCCCCCEECCCCCCCCCCCCCCC-CCC----CCCCCCCCCEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 530300000025642111111111-000----0124565416999899--99999994899699998999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4.4e-22 Score=174.28 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=71.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE----EEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 998289999379999999968993999988999288----8940799999985899985418996899993798299998
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL----NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1110 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l----~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD 1110 (1262)
...|.++.|+|+++.+++++.++.|++|++...... .....|. ..|++++|+ +++.+|++|+.||.|++|+
T Consensus 95 ~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~--p~~~~l~s~s~D~~v~v~~ 169 (371)
T d1k8kc_ 95 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR---STVLSLDWH--PNSVLLAAGSCDFKCRIFS 169 (371)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC---SCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCEECCCCCCEEEEEE
T ss_conf 11000111111121100000257630254420334331110010111---222111111--1111100013476799984
Q ss_pred CCCCCCCCEE-----------EEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 6787885227-----------74001024789950014204887079998999968980999968888513576449999
Q 000836 1111 DYDQKDKQKL-----------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD 1179 (1262)
Q Consensus 1111 ~~~~~g~~~l-----------vsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~ 1179 (1262)
.......... .........|...+.+ ++|++++..+++++.|+.|++||+..+. .+..+..|..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~ 244 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG----VCFSANGSRVAWVSHDSTVCLADADKKM-AVATLASETL 244 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE----EEECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEECSSC
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE----EEEECCCCCCCCCCCCCCCEEEEEECCC-CEEEEECCCC
T ss_conf 0157643100122111111110112440476674789----8751233210000147860588641012-1000001466
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 9826999874999999999789919999
Q 000836 1180 CSISALTASQVHGGQLAAGFVDGSVRLY 1207 (1262)
Q Consensus 1180 s~ItsLs~~s~~g~lLasGs~DGsVrIW 1207 (1262)
. |+++ .|++++.++++|. |+.+++|
T Consensus 245 ~-v~s~-~fs~d~~~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 245 P-LLAV-TFITESSLVAAGH-DCFPVLF 269 (371)
T ss_dssp C-EEEE-EEEETTEEEEEET-TSSCEEE
T ss_pred C-CEEE-EECCCCCEEEEEC-CCCEEEE
T ss_conf 5-2036-5469997999981-9926787
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.8e-22 Score=172.87 Aligned_cols=207 Identities=14% Similarity=0.211 Sum_probs=132.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99828999937999999996899399998899928889407999999858999854189968999937982999986787
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~ 1114 (1262)
...|.++.|++++..+++++.++.|++||..+.........+. ...++.+. +.++.++++|+.||.|++|+....
T Consensus 163 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~ 237 (388)
T d1erja_ 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETG 237 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEEC-STTCCEEEEEETTSCEEEEETTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC----CCCCCCCC-CCCCCEEEEECCCCEEEEEECCCC
T ss_conf 1111110111111111122210156541011111100001245----44211236-887875899738981999634557
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCC-----------EEEEEECCCCCCCEE
Q ss_conf 885227740010247899500142048870799989999689809999688885-----------135764499999826
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----------QMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~-----------~~i~ti~~hs~s~It 1183 (1262)
.....+........+|...|.+ +.|++++..+++++.|+.|++||++... .+......|... |+
T Consensus 238 ~~~~~~~~~~~~~~~h~~~v~~----l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 312 (388)
T d1erja_ 238 FLVERLDSENESGTGHKDSVYS----VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-VL 312 (388)
T ss_dssp CEEEEEC------CCCSSCEEE----EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-EE
T ss_pred CCCEEECCCCCCCCCCCCCEEE----EEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCE-EE
T ss_conf 3000102443334577898789----999799999999978992898751577643210134442001101245532-78
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEE------ECCCCCCEEEEECCC-CEEEEEC
Q ss_conf 999874999999999789919999788998102320578878889399999------429999899994399-5599844
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF------QPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1184 sLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIaf------spd~~g~~LvSgSdd-~I~iWDL 1256 (1262)
++ .+++++.+|++|+.||.|++||+++++ ++..+ .+|.+.|+++++ +|+ +.+|+||+.| .|++|++
T Consensus 313 ~~-~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~l---~~H~~~V~~~~~~~~~~~spd--~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 313 SV-ATTQNDEYILSGSKDRGVLFWDKKSGN-PLLML---QGHRNSVISVAVANGSSLGPE--YNVFATGSGDCKARIWKY 385 (388)
T ss_dssp EE-EECGGGCEEEEEETTSEEEEEETTTCC-EEEEE---ECCSSCEEEEEECSSCTTCTT--CEEEEEEETTSEEEEEEE
T ss_pred EE-EECCCCCEEEEEECCCEEEEEECCCCC-EEEEE---ECCCCCEEEEEEECCCCCCCC--CCEEEEEECCCEEEEEEE
T ss_conf 99-988999999999698979999999996-99999---688997899998467425899--999999918997999762
Q ss_pred CC
Q ss_conf 31
Q 000836 1257 IY 1258 (1262)
Q Consensus 1257 ry 1258 (1262)
+-
T Consensus 386 ~k 387 (388)
T d1erja_ 386 KK 387 (388)
T ss_dssp EE
T ss_pred EE
T ss_conf 14
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.92 E-value=6.3e-22 Score=173.13 Aligned_cols=200 Identities=14% Similarity=0.183 Sum_probs=163.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCC-EEEEEECCCEEEEE
Q ss_conf 88998289999379999999968--9939999889992888940799999985899985418996-89999379829999
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADE--NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~--dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~-lLvTgS~DG~IrIW 1109 (1262)
.|...|.+++|+|+++++++++. +..++||++++++....+..|. ..|++++|+ +++. .+++|+.||.|++|
T Consensus 100 ~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~---~~v~~v~~~--~~~~~~l~sgs~d~~i~i~ 174 (311)
T d1nr0a1 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---RAMNSVDFK--PSRPFRIISGSDDNTVAIF 174 (311)
T ss_dssp CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS---SCEEEEEEC--SSSSCEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC--CCCEEEECCCCCCCCCCCC
T ss_conf 33575433233311100011112211111111111111111111111---111111112--1110120001122111111
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-------CCCCCCE
Q ss_conf 867878852277400102478995001420488707999899996898099996888851357644-------9999982
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-------SSSDCSI 1182 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~-------~hs~s~I 1182 (1262)
|.+. ++. . .....|...+.+ +.|+|++..+++++.|+.|++||.+.+. .+..+. +|.+. |
T Consensus 175 d~~~--~~~--~---~~~~~~~~~i~~----v~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~-V 241 (311)
T d1nr0a1 175 EGPP--FKF--K---STFGEHTKFVHS----VRYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGS-V 241 (311)
T ss_dssp ETTT--BEE--E---EEECCCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSC-E
T ss_pred CCCC--CCC--C---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-C
T ss_conf 1111--111--1---111111111111----2347642212111111111000124464-112221111111002465-3
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEC-CCCEEEEEC
Q ss_conf 69998749999999997899199997889981023205788788893999994299998999943-995599844
Q 000836 1183 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1183 tsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgS-dd~I~iWDL 1256 (1262)
+++ .+++++.+|++|+.||.|++||.++++ +.+.+..+..+...+.++.|+++ .|++++ ++.+++||+
T Consensus 242 ~~~-~~s~~~~~l~tgs~Dg~v~iwd~~t~~-~~~~l~~~~~~~~~~~~~~~~~~----~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 242 FGL-TWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQ----ALVSISANGFINFVNP 310 (311)
T ss_dssp EEE-EECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEECSS----CEEEEETTCCEEEEET
T ss_pred CCC-CCCCCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCCCCEEEEEEECCC----EEEEEECCCEEEEEEC
T ss_conf 210-247889999999379969999999996-99999799986332999995199----9999989997999958
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2e-21 Score=169.49 Aligned_cols=205 Identities=16% Similarity=0.236 Sum_probs=162.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..+...|.+++|+|++++|++|+.|+.|++||...++.+..+.+|. ..|+++.|+ +++..+++|+.+|.+++||.
T Consensus 118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~---~~v~~~~~~--~~~~~~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE---QDIYSLDYF--PSGDKLVSGSGDRTVRIWDL 192 (388)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred CCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC--CCCCCCCCCCCCEEEEEEEC
T ss_conf 6778988999988999801213444111121111111111111111---111110111--11111112221015654101
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEC-------CCCCCCEE
Q ss_conf 787885227740010247899500142048870-7999899996898099996888851357644-------99999826
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-------SSSDCSIS 1183 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~ws-p~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~-------~hs~s~It 1183 (1262)
.. .... .....+.. ... +.+. .++..+++++.|+.|++||.+++. .+..+. .|.+. |+
T Consensus 193 ~~--~~~~-----~~~~~~~~-~~~----~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~-v~ 258 (388)
T d1erja_ 193 RT--GQCS-----LTLSIEDG-VTT----VAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDS-VY 258 (388)
T ss_dssp TT--TEEE-----EEEECSSC-EEE----EEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSC-EE
T ss_pred CC--CCCC-----CCCCCCCC-CCC----CCCCCCCCCEEEEECCCCEEEEEECCCCC-CCEEECCCCCCCCCCCCC-EE
T ss_conf 11--1110-----00012454-421----12368878758997389819996345573-000102443334577898-78
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE--------EECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEE
Q ss_conf 9998749999999997899199997889981023--------20578878889399999429999899994399-55998
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC--------STRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFS 1254 (1262)
Q Consensus 1184 sLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~--------~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iW 1254 (1262)
++ .+++++.+|++|+.||.|++||++....... .......|...|.+++|+|+ +.+|++|+.| .+++|
T Consensus 259 ~l-~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~vw 335 (388)
T d1erja_ 259 SV-VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYILSGSKDRGVLFW 335 (388)
T ss_dssp EE-EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG--GCEEEEEETTSEEEEE
T ss_pred EE-EECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC--CCEEEEEECCCEEEEE
T ss_conf 99-99799999999978992898751577643210134442001101245532789998899--9999999698979999
Q ss_pred ECCC
Q ss_conf 4431
Q 000836 1255 DLIY 1258 (1262)
Q Consensus 1255 DLry 1258 (1262)
|+..
T Consensus 336 d~~~ 339 (388)
T d1erja_ 336 DKKS 339 (388)
T ss_dssp ETTT
T ss_pred ECCC
T ss_conf 9999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=4.4e-21 Score=166.94 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=134.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.+...+.++.|++++..++++. ++.+.+|+.. +...... . ..++++.|+ +++.++++|+.||.|++||..
T Consensus 97 ~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~~--~---~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~ 166 (299)
T d1nr0a2 97 KLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVPI--S---YNSSCVALS--NDKQFVAVGGQDSKVHVYKLS 166 (299)
T ss_dssp ECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEEC--S---SCEEEEEEC--TTSCEEEEEETTSEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCCC--C---CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
T ss_conf 1134432100112211111222-2222111111--1111011--1---123322111--111111111111111111111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE---EECCCCCCCEEEEEEEC
Q ss_conf 878852277400102478995001420488707999899996898099996888851357---64499999826999874
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN---PIPSSSDCSISALTASQ 1189 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~---ti~~hs~s~ItsLs~~s 1189 (1262)
. +....+ ....|...+.+ +.|++++..+++++.++.|++||+.++. ... .+..|... |+++ .++
T Consensus 167 ~--~~~~~~----~~~~~~~~i~~----~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~h~~~-v~~l-~~s 233 (299)
T d1nr0a2 167 G--ASVSEV----KTIVHPAEITS----VAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAK-VACV-SWS 233 (299)
T ss_dssp T--TEEEEE----EEEECSSCEEE----EEECTTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSC-EEEE-EEC
T ss_pred C--CCCCCC----CCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCCC-CCC
T ss_conf 1--111111----11111111111----1111111111111111111111111111-11111111111111-1111-246
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 999999999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1190 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1190 ~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+++.+|++|+.||.|++||++.+....... ....+...+..+.|.++ ..|++++.| .+++||+.|
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~---~~l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNE---TTIVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEET---TEEEEEETTSCEEEEECCC
T ss_pred CCCCCEEEECCCCEEEEEECCCCCCCEEEE-ECCCCCCCEEEEEECCC---CEEEEEECCCEEEEEECCC
T ss_conf 664513888289979999899997314898-34898896899997798---9999992899799994449
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=5.4e-21 Score=166.32 Aligned_cols=199 Identities=15% Similarity=0.303 Sum_probs=167.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..+...+.++.|++++..+++++.|+.+++||..+++.+..+..|. ..+.++.|+ +++.++++++.||.|++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR---EWVRMVRPN--QDGTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred CCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC---CCCEEEECC--CCCCEEEEEECCCEEEEEEE
T ss_conf 0000000000016998557765267523575114430346871677---763000016--67999999927982999751
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEC--------------------CCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 787885227740010247899500142048870--------------------799989999689809999688885135
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ--------------------QQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~ws--------------------p~~~~Llssg~Dg~IrIWDlrs~~~~i 1171 (1262)
.. +... ..+.++...+.. +.|. ..+..+++++.|+.|++||.++++ ++
T Consensus 173 ~~--~~~~-----~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~ 240 (317)
T d1vyhc1 173 AT--KECK-----AELREHRHVVEC----ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CL 240 (317)
T ss_dssp TT--CCEE-----EEECCCSSCEEE----EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EE
T ss_pred CC--CEEE-----EEEECCCCCCEE----EEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EE
T ss_conf 25--4034-----788247787337----998632564111034563034302588614751699789998889996-88
Q ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-C
Q ss_conf 764499999826999874999999999789919999788998102320578878889399999429999899994399-5
Q 000836 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-L 1250 (1262)
Q Consensus 1172 ~ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~ 1250 (1262)
.++..|... |+++ .+++++.+|++|+.||.|++||+++++ ++..+ .+|.+.|++++|+|+ +.+|++|+.| .
T Consensus 241 ~~~~~~~~~-v~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~h~~~V~~~~~s~~--~~~l~s~s~Dg~ 312 (317)
T d1vyhc1 241 MTLVGHDNW-VRGV-LFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL---NAHEHFVTSLDFHKT--APYVVTGSVDQT 312 (317)
T ss_dssp EEEECCSSC-EEEE-EECSSSSCEEEEETTTEEEEECCTTSC-CCEEE---ECCSSCEEEEEECSS--SSCEEEEETTSE
T ss_pred EEEECCCCC-EEEE-EECCCCCEEEEEECCCEEEEEECCCCC-EEEEE---CCCCCCEEEEEECCC--CCEEEEEECCCE
T ss_conf 999688998-7999-987999999999798949999999991-99999---289998899999499--999999928994
Q ss_pred EEEEE
Q ss_conf 59984
Q 000836 1251 PSFSD 1255 (1262)
Q Consensus 1251 I~iWD 1255 (1262)
|++||
T Consensus 313 i~iWd 317 (317)
T d1vyhc1 313 VKVWE 317 (317)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99829
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=9.4e-21 Score=164.55 Aligned_cols=202 Identities=16% Similarity=0.302 Sum_probs=142.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCC------------------
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189------------------
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD------------------ 1093 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~d------------------ 1093 (1262)
..|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+..|. ..|+++.|+ ++
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~~--~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISFD--HSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEEC--TTSSEEEEEETTSCCCEEET
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEE--CCCCCCCCCCCCCCCCCCCC
T ss_conf 5888876899993898999999389929999899997999995788---867777630--11110111111111011100
Q ss_pred ------------------------CCEEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCE
Q ss_conf ------------------------96899993798299998678788522774001024789950014204887079998
Q 000836 1094 ------------------------VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1149 (1262)
Q Consensus 1094 ------------------------g~lLvTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~ 1149 (1262)
+..+++++.|+.+++|+... +.. ...+..|...+.. +.|++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~-----~~~~~~~~~~~~~----~~~~~~~~~ 157 (317)
T d1vyhc1 89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYC-----VKTFTGHREWVRM----VRPNQDGTL 157 (317)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCE-----EEEEECCSSCEEE----EEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC--CEE-----EEEECCCCCCCEE----EECCCCCCE
T ss_conf 11111111000000000000169985577652675235751144--303-----4687167776300----001667999
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC--------------------CCCEEEEEECCCCEEEEEC
Q ss_conf 99996898099996888851357644999998269998749--------------------9999999978991999978
Q 000836 1150 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--------------------HGGQLAAGFVDGSVRLYDV 1209 (1262)
Q Consensus 1150 Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~--------------------~g~lLasGs~DGsVrIWDl 1209 (1262)
+++++.|+.|++|+.+... .+..+..+... +.++ .+.+ .+..+++|+.||.|++||.
T Consensus 158 l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 234 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATKE-CKAELREHRHV-VECI-SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234 (317)
T ss_dssp EEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EEEEECCCEEEEEEECCCE-EEEEEECCCCC-CEEE-EEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEC
T ss_conf 9999279829997512540-34788247787-3379-9863256411103456303430258861475169978999888
Q ss_pred CCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 8998102320578878889399999429999899994399-559984431
Q 000836 1210 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1210 rs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+++. .+..+ .+|..+|.+++|+|+ +.+|++++.| .+++||+..
T Consensus 235 ~~~~-~~~~~---~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 235 STGM-CLMTL---VGHDNWVRGVLFHSG--GKFILSCADDKTLRVWDYKN 278 (317)
T ss_dssp TTTE-EEEEE---ECCSSCEEEEEECSS--SSCEEEEETTTEEEEECCTT
T ss_pred CCCC-EEEEE---ECCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 9996-88999---688998799998799--99999997989499999999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.5e-20 Score=159.54 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=156.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEE--CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCC-EEEEEECCCEEEEE
Q ss_conf 8899828999937999999996--89939999889992888940799999985899985418996-89999379829999
Q 000836 1033 RFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs--~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~-lLvTgS~DG~IrIW 1109 (1262)
.+..+|.+++|++++.++++++ .++.+.+|++.+++.+..+..|. ..|+++.|+ +++. ++++++.||.|++|
T Consensus 113 ~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~--~~~~~~~~~~~~d~~v~~~ 187 (325)
T d1pgua1 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS---QRINACHLK--QSRPMRSMTVGDDGSVVFY 187 (325)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS---SCEEEEEEC--SSSSCEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECC---CCCCCCCCC--CCCCCEEEEEECCCCCCCC
T ss_conf 65673779998999882201001244047888502331100120012---343211112--3432068886211122111
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCC-CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE--
Q ss_conf 86787885227740010247899500142048870799-989999689809999688885135764499999826999--
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT-- 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~-~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs-- 1186 (1262)
+... . +..........|...+.+ ++|+|++ ..+++++.|+.|++||+++++ ++..+..|... +.++.
T Consensus 188 d~~~--~--~~~~~~~~~~~~~~~v~~----v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~-v~~~~~s 257 (325)
T d1pgua1 188 QGPP--F--KFSASDRTHHKQGSFVRD----VEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEP-VQGGIFA 257 (325)
T ss_dssp ETTT--B--EEEEEECSSSCTTCCEEE----EEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBC-CCSCEEE
T ss_pred CCCC--C--CCCEECCCCCCCCCCCEE----EEECCCCCEECCCCCCCCCEEEEEECCCC-CCCCCCCCCCC-CCCCEEE
T ss_conf 1221--1--000000001577775277----63034531000011233210134300122-21111111111-1110000
Q ss_pred -EECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEEC
Q ss_conf -874999999999789919999788998102320578878889399999429999899994399-5599844
Q 000836 1187 -ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDL 1256 (1262)
Q Consensus 1187 -~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDL 1256 (1262)
.+ +++.+|++|+.||.|++||+++++ ++..+..+ ++...+..+++.+. +...|++++.| .+++||+
T Consensus 258 ~~~-~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 258 LSW-LDSQKFATVGADATIRVWDVTTSK-CVQKWTLD-KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEE-SSSSEEEEEETTSEEEEEETTTTE-EEEEEECC-TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred EEC-CCCCEEEEEECCCEEEEEECCCCC-EEEEEEEC-CCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEEC
T ss_conf 003-689999999589939999999997-88999954-87406769999988-9999999979999999979
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.1e-19 Score=156.66 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=149.1
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCEE
Q ss_conf 99937999999996899399998899928889407999999858999854189968999937982999986787885227
Q 000836 1041 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL 1120 (1262)
Q Consensus 1041 l~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~g~~~l 1120 (1262)
..+......+++++.++.|++||......+..+.+|. ..+..+.+ ++..+++|+.||.|++||... ++.
T Consensus 141 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~----~~~~l~s~~~dg~i~~~d~~~--~~~-- 209 (342)
T d2ovrb2 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT---NRVYSLQF----DGIHVVSGSLDTSIRVWDVET--GNC-- 209 (342)
T ss_dssp EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS---SCEEEEEE----CSSEEEEEETTSCEEEEETTT--CCE--
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC---CCCCCCCC----CCCEEEEEECCCEEEEEECCC--CEE--
T ss_conf 0000133302433589869995252343667872754---44210068----999999995899399952556--536--
Q ss_pred EEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC--CEEEEEEECCCCCEEEEE
Q ss_conf 740010247899500142048870799989999689809999688885135764499999--826999874999999999
Q 000836 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC--SISALTASQVHGGQLAAG 1198 (1262)
Q Consensus 1121 vsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s--~ItsLs~~s~~g~lLasG 1198 (1262)
+ +....|...+.+ +.++ +..+++++.|+.|++||....+ ....+..+... .+.++ ..+++++++|
T Consensus 210 ~---~~~~~~~~~v~~----~~~~--~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~s~ 276 (342)
T d2ovrb2 210 I---HTLTGHQSLTSG----MELK--DNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCL---QFNKNFVITS 276 (342)
T ss_dssp E---EEECCCCSCEEE----EEEE--TTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEE---EECSSEEEEE
T ss_pred E---EEECCCCCCEEE----EECC--CCEEEEECCCCEEEEEECCCCC-CCCCCCCCCEEEECEEEC---CCCCCEEEEE
T ss_conf 5---674166532057----7068--9999997489889998655442-211122100011010000---1379844999
Q ss_pred ECCCCEEEEECCCCCCEEEEEC--CCCCCCCCEEEEEEECCCCCCEEEEECCC-----CEEEEECCC
Q ss_conf 7899199997889981023205--78878889399999429999899994399-----559984431
Q 000836 1199 FVDGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKVNGTPKC-----LPSFSDLIY 1258 (1262)
Q Consensus 1199 s~DGsVrIWDlrs~~~~v~~~~--~~~gH~~~V~sIafspd~~g~~LvSgSdd-----~I~iWDLry 1258 (1262)
+.||.|++||+++++ .++.+. ...+|...|++++|+|+ +..+++|++| .+.+||+--
T Consensus 277 s~Dg~i~iwd~~tg~-~i~~~~~~~~~~~~~~v~~v~~s~~--~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 277 SDDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNT--KLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ETTSEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSS--EEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEECCCCC-EEEEEECCCCCCCCCCEEEEEECCC--CCEEEEEECCCCCEEEEEEEECCC
T ss_conf 089989999999997-9899862347898897899998799--989999968999704899993899
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=9.6e-19 Score=149.84 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=152.4
Q ss_pred CCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCE--------EEEEECCCCCCCCEEEEEEEECCCCCEEEEEEC-
Q ss_conf 899828999937--999999996899399998899928--------889407999999858999854189968999937-
Q 000836 1034 FEKGTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC- 1102 (1262)
Q Consensus 1034 ~~~~V~sl~fsp--dg~~Lvsgs~dg~I~IWD~~tg~~--------l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~- 1102 (1262)
+...|++++|+| ++.++++|+.||+|+|||+..++. ...+..|. +.|.++.|+ +++..+++++.
T Consensus 62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~s--~~~~~l~~~~~~ 136 (325)
T d1pgua1 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA---GPISDISWD--FEGRRLCVVGEG 136 (325)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS---SCEEEEEEC--TTSSEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC---CCEEEEEEC--CCCCCCCEEECC
T ss_conf 999889999811799979999948997798540588621565100254113656---737799989--998822010012
Q ss_pred -CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEEECC---C
Q ss_conf -98299998678788522774001024789950014204887079998-999968980999968888513576449---9
Q 000836 1103 -NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPS---S 1177 (1262)
Q Consensus 1103 -DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~-Llssg~Dg~IrIWDlrs~~~~i~ti~~---h 1177 (1262)
++.+++|+... ++. + ..+.+|...+.+ +.|++++.. +++++.|+.+++||....+ ....+.. +
T Consensus 137 ~~~~~~~~~~~~--~~~--~---~~~~~h~~~v~~----~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~ 204 (325)
T d1pgua1 137 RDNFGVFISWDS--GNS--L---GEVSGHSQRINA----CHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQ 204 (325)
T ss_dssp SSCSEEEEETTT--CCE--E---EECCSCSSCEEE----EEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCT
T ss_pred CCCEEEEEEECC--CCC--C---EEEEECCCCCCC----CCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCC
T ss_conf 440478885023--311--0---012001234321----11123432068886211122111122110-00000001577
Q ss_pred CCCCEEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEE---CCCCCCEEEEECCC-CEE
Q ss_conf 99982699987499-99999997899199997889981023205788788893999994---29999899994399-559
Q 000836 1178 SDCSISALTASQVH-GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ---PGLDPAKVNGTPKC-LPS 1252 (1262)
Q Consensus 1178 s~s~ItsLs~~s~~-g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafs---pd~~g~~LvSgSdd-~I~ 1252 (1262)
... |+++ .++|+ +.++++|+.||.|++||.++++ .+..+. +|..++.++.|+ ++ +.+|++++.| .++
T Consensus 205 ~~~-v~~v-~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~---~~~~~v~~~~~s~~~~d--g~~l~s~s~D~~i~ 276 (325)
T d1pgua1 205 GSF-VRDV-EFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIE---DDQEPVQGGIFALSWLD--SQKFATVGADATIR 276 (325)
T ss_dssp TCC-EEEE-EECSTTCCEEEEEETTCCEEEEETTTCC-EEEECC---BTTBCCCSCEEEEEESS--SSEEEEEETTSEEE
T ss_pred CCC-CEEE-EECCCCCEECCCCCCCCCEEEEEECCCC-CCCCCC---CCCCCCCCCEEEEECCC--CCEEEEEECCCEEE
T ss_conf 775-2776-3034531000011233210134300122-211111---11111111000000368--99999995899399
Q ss_pred EEECCC
Q ss_conf 984431
Q 000836 1253 FSDLIY 1258 (1262)
Q Consensus 1253 iWDLry 1258 (1262)
+||+..
T Consensus 277 iwd~~~ 282 (325)
T d1pgua1 277 VWDVTT 282 (325)
T ss_dssp EEETTT
T ss_pred EEECCC
T ss_conf 999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.2e-19 Score=152.50 Aligned_cols=206 Identities=16% Similarity=0.277 Sum_probs=129.8
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..+...|+|+.| ++++|++|+.||.|+|||+.+++++..+.+|. +.|++++| ++++|++|+.||.|++|+.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~----~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT---GSVLCLQY----DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS---SCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEC----CCCEEECCCCCCCCCCCCC
T ss_conf 899998899987--69999999289939999999991999992677---87763423----6300210011101100000
Q ss_pred CCCCCCCE-----------------EEEE-------------------EEECCCCCCCCCCC------------------
Q ss_conf 78788522-----------------7740-------------------01024789950014------------------
Q 000836 1112 YDQKDKQK-----------------LVTA-------------------FSSIQGHKPGVRCS------------------ 1137 (1262)
Q Consensus 1112 ~~~~g~~~-----------------lvsa-------------------~~~l~~h~~~V~sv------------------ 1137 (1262)
........ ++.. ......|...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 162 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEE
T ss_conf 24641001111110000111111000001356630686134454442121000113543110000022011069986041
Q ss_pred ----------------CEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf ----------------2048870799989999689809999688885135764499999826999874999999999789
Q 000836 1138 ----------------NVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1201 (1262)
Q Consensus 1138 ----------------~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasGs~D 1201 (1262)
..+..+...+..+++++.|+.|++||++... .+..+..+... +..+ ..++..+++|+.|
T Consensus 163 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~-v~~~---~~~~~~l~sg~~d 237 (293)
T d1p22a2 163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEEL-VRCI---RFDNKRIVSGAYD 237 (293)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE---ECCSSEEEEEETT
T ss_pred ECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCE-EEEEECCCCEE-EEEC---CCCCEEEEEECCC
T ss_conf 00788838899715544532216898758876589989998665561-46652143100-0001---4541079998679
Q ss_pred CCEEEEECCCCCCE-----EEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEE
Q ss_conf 91999978899810-----2320578878889399999429999899994399-559984
Q 000836 1202 GSVRLYDVRTPDML-----VCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSD 1255 (1262)
Q Consensus 1202 GsVrIWDlrs~~~~-----v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWD 1255 (1262)
|.|++||++..... ........+|.+.|++++|++ .+|+|++.| .+++||
T Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~----~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE----FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS----SCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC----CEEEEEECCCEEEEEC
T ss_conf 9799998888864445677545578458899889999719----9999992299899959
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=2.6e-18 Score=146.70 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=147.6
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCEE
Q ss_conf 99937999999996899399998899928889407999999858999854189968999937982999986787885227
Q 000836 1041 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL 1120 (1262)
Q Consensus 1041 l~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~g~~~l 1120 (1262)
..+.+++..++++..++.|++||..+++.+..+..+. ..+.++.|+ +++..+++++.||.|++|+..+ +..
T Consensus 165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~--~~~-- 235 (355)
T d1nexb2 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---DRIYSTIYD--HERKRCISASMDTTIRIWDLEN--GEL-- 235 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE--TTTTEEEEEETTSCEEEEETTT--CCE--
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCC---CCCCCCCCC--CCCEEEECCCCCCEEEEEECCC--CCC--
T ss_conf 0000256334421144204443013110001100012---332111111--2100210124563687630122--111--
Q ss_pred EEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 74001024789950014204887079998999968980999968888513576449999982699987499999999978
Q 000836 1121 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1200 (1262)
Q Consensus 1121 vsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasGs~ 1200 (1262)
+ ..+.+|...+.+ +.|+ +..+++++.|+.|++||++... .... .|... +.++.++++++.++++|+
T Consensus 236 ~---~~~~~h~~~v~~----~~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~-~~~~~~~~~~~~~l~~g~- 301 (355)
T d1nexb2 236 M---YTLQGHTALVGL----LRLS--DKFLVSAAADGSIRGWDANDYS-RKFS--YHHTN-LSAITTFYVSDNILVSGS- 301 (355)
T ss_dssp E---EEECCCSSCCCE----EEEC--SSEEEEECTTSEEEEEETTTCC-EEEE--EECTT-CCCCCEEEECSSEEEEEE-
T ss_pred C---CCCCCCCCCCCC----CCCC--CCEEEEEECCCCCCCCCCCCCC-EECC--CCCCC-CEEEEEECCCCCEEEEEE-
T ss_conf 1---111111111111----1232--1003332011111111111111-0001--24688-229999849998999980-
Q ss_pred CCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 9919999788998102320578878889399999429999899994399-559984431
Q 000836 1201 DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1201 DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
||.|++||+++++. +.. ...+|...|.+++|+++ . .+++++.| .+.+|.+-|
T Consensus 302 d~~i~vwd~~tg~~-~~~--~~~~~~~~V~~v~~~~~--~-~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 302 ENQFNIYNLRSGKL-VHA--NILKDADQIWSVNFKGK--T-LVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp TTEEEEEETTTCCB-CCS--CTTTTCSEEEEEEEETT--E-EEEEEESSSCEEEEEEEC
T ss_pred CCEEEEEECCCCCE-EEE--EECCCCCCEEEEEECCC--E-EEEEEECCCCEEEEEEEC
T ss_conf 99799999999979-888--84589998999998399--1-999998989099999958
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=3.4e-18 Score=145.78 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=114.3
Q ss_pred CCEEEEEECCC-----CCEEEEEECCCCEEEEECCCC---------------CEEEEEECCCCCCCCEEEEEEEECCCCC
Q ss_conf 98289999379-----999999968993999988999---------------2888940799999985899985418996
Q 000836 1036 KGTKTALLQPF-----SPIVVAADENERIKIWNYEED---------------TLLNSFDNHDFPDKGISKLCLVNELDVS 1095 (1262)
Q Consensus 1036 ~~V~sl~fspd-----g~~Lvsgs~dg~I~IWD~~tg---------------~~l~~l~~h~~~~~~ItsL~fsn~~dg~ 1095 (1262)
..+..+.|.++ +.++++++.|+.|++|++... ...............+++++|+ +++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s--~dg- 196 (393)
T d1sq9a_ 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG- 196 (393)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-
T ss_pred CCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEEC--CCC-
T ss_conf 96689998447886542179998389819998740477534102331032000145100025789867899978--999-
Q ss_pred EEEEEECCCEEEEEECCCCCCCCE-EEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEE
Q ss_conf 899993798299998678788522-77400102478995001420488707999899996898---09999688885135
Q 000836 1096 LLLVASCNGNIRIWKDYDQKDKQK-LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS---SIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1096 lLvTgS~DG~IrIWD~~~~~g~~~-lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg---~IrIWDlrs~~~~i 1171 (1262)
++++|+.||+|++||..+ ++.. .......+.+|...|++ ++|+|++..+++++.|+ .|++||+++++ ++
T Consensus 197 ~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~----l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-~~ 269 (393)
T d1sq9a_ 197 LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRS----VKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RI 269 (393)
T ss_dssp EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEE----EEECSSTTEEEEEEEETTEEEEEEEETTTCC-EE
T ss_pred EEEEEECCCCEEEEEECC--CCCCCCCCCCCCCCCCCCEEEE----CCCCCCCCEEEEECCCCCCCEEEECCCCCCE-EE
T ss_conf 899993898299986023--3211000011111242563877----0046653201124289884210010353213-44
Q ss_pred EEEC-------------CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEC
Q ss_conf 7644-------------999998269998749999999997899199997889981023205
Q 000836 1172 NPIP-------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1220 (1262)
Q Consensus 1172 ~ti~-------------~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~ 1220 (1262)
..+. +|.+. |+++ .|++++++|++|+.||.|++||+++++ ++..++
T Consensus 270 ~~l~~~~~~~~~~~~~~gH~~~-V~~l-~fspd~~~l~S~s~D~~v~vWd~~~g~-~~~~l~ 328 (393)
T d1sq9a_ 270 GSLSVPTHSSQASLGEFAHSSW-VMSL-SFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLN 328 (393)
T ss_dssp EEECBC--------CCBSBSSC-EEEE-EECSSSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred EEECCCCCCCCCEEEEECCCCC-EEEE-CCCCCCCEEEEECCCCEEEEEECCCCC-EEEEEC
T ss_conf 4311566664310232023586-6600-138988806987799989999999997-999998
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=3.5e-18 Score=145.75 Aligned_cols=159 Identities=17% Similarity=0.300 Sum_probs=139.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.+...+....+.+.+.++++++.++.|++||..+++.+..+..|. ..|++++|+ +++.+|++|+.||.|++|+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~--p~~~~l~s~s~d~~i~~~~~~ 256 (340)
T d1tbga_ 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---SDINAICFF--PNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS---SCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEC--CCCCEEEEEECCCEEEEEEEC
T ss_conf 310157630012442126876057369999999994889995788---985899997--998999999699969997521
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 87885227740010247899500142048870799989999689809999688885135764499999826999874999
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1192 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g 1192 (1262)
. ...... .....+...+.. +.|++++..+++++.|+.|++||+.+++ ++..+.+|.+. |+++ .+++++
T Consensus 257 ~--~~~~~~---~~~~~~~~~i~~----~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~H~~~-V~~l-~~s~d~ 324 (340)
T d1tbga_ 257 A--DQELMT---YSHDNIICGITS----VSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNR-VSCL-GVTDDG 324 (340)
T ss_dssp T--TEEEEE---ECCTTCCSCEEE----EEECSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECTTS
T ss_pred C--CCCCCC---CCCCCCCCCEEE----EEECCCCCEEEEEECCCEEEEEECCCCC-EEEEECCCCCC-EEEE-EEECCC
T ss_conf 2--211111---112244574589----9998999999999797989999999993-98998489997-8999-990899
Q ss_pred CEEEEEECCCCEEEEE
Q ss_conf 9999997899199997
Q 000836 1193 GQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1193 ~lLasGs~DGsVrIWD 1208 (1262)
.+|++|+.||.|++||
T Consensus 325 ~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEECCCCEEEEEC
T ss_conf 9999990699799859
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2e-18 Score=147.46 Aligned_cols=218 Identities=12% Similarity=0.061 Sum_probs=129.4
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE---EEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEE
Q ss_conf 2468899828999937999999996899399998899928---8894079999998589998541899689999379829
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL---LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1106 (1262)
Q Consensus 1030 W~~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~---l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~I 1106 (1262)
....|...|++++|+|++++|++|+.|++|+|||+.++.. +.....|. ..|++++|+ +.++.++++|+.||.|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---~~V~~v~f~-~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---HPLLCCNFI-DNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---SCEEEEEEE-ESSSEEEEEEETTSCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCC---CCEEEEEEE-CCCCCEEEECCCCCCE
T ss_conf 688998978889995899999999799929999756998636898855899---988999995-8999789981265311
Q ss_pred EEEECCCCCCCCEE--------------------EE--------EEE------------ECCCCCCCCCCCCEEEEECCC
Q ss_conf 99986787885227--------------------74--------001------------024789950014204887079
Q 000836 1107 RIWKDYDQKDKQKL--------------------VT--------AFS------------SIQGHKPGVRCSNVVVDWQQQ 1146 (1262)
Q Consensus 1107 rIWD~~~~~g~~~l--------------------vs--------a~~------------~l~~h~~~V~sv~l~i~wsp~ 1146 (1262)
++|+.......... ++ .|. ....+..... .....+...
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 159 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK--NKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC--CCEEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCE--EEEEEEECC
T ss_conf 454204432000001111111111111111111111012221110202344433023000243001200--000100016
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEE---ECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE--------
Q ss_conf 998999968980999968888513576---449999982699987499999999978991999978899810--------
Q 000836 1147 SGYLYASGEVSSIMLWDLEKEQQMVNP---IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML-------- 1215 (1262)
Q Consensus 1147 ~~~Llssg~Dg~IrIWDlrs~~~~i~t---i~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~-------- 1215 (1262)
+..+++++.|+.|++||++... .... ....... +.+...++.++..+++++.||.+.+|+.......
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCE-DDNGTIEESGLKYQ-IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCT-TCCCEEEECSCSSC-EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCCEEEECCCCCEEEEECCCCC-CCCEEEEECCCCCC-EEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCE
T ss_conf 8702465179847887605676-34111210254221-014676369998788654899599998059864011123512
Q ss_pred E---EEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECC
Q ss_conf 2---320578878889399999429999899994399-55998443
Q 000836 1216 V---CSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1216 v---~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLr 1257 (1262)
. .......+|...|++++|+|+ +.+|++|+.| .+++||+.
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~--~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPR--HKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTT--TCCEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCCCCCCCCEEEEECCC--CCEEEEECCCCEEEEEECC
T ss_conf 5655531477762354315996698--4479998799989999999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.1e-18 Score=149.43 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=118.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE------CCCCCCCCEEEEEEEECCCCCEEEEEECCC--
Q ss_conf 889982899993799999999689939999889992888940------799999985899985418996899993798--
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD------NHDFPDKGISKLCLVNELDVSLLLVASCNG-- 1104 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~------~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG-- 1104 (1262)
.+...+.+++|+|++ ++++|+.|+.|+|||+.+++.+..+. +|. ..|++++|+ +++.+|++|+.|+
T Consensus 182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~---~~V~~l~~s--pdg~~l~sgs~D~t~ 255 (393)
T d1sq9a_ 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS---NSIRSVKFS--PQGSLLAIAHDSNSF 255 (393)
T ss_dssp SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC---CCEEEEEEC--SSTTEEEEEEEETTE
T ss_pred CCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC---CEEEECCCC--CCCCEEEEECCCCCC
T ss_conf 789867899978999-89999389829998602332110000111112425---638770046--653201124289884
Q ss_pred -EEEEEECCCCCCCCEEE--------EEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf -29999867878852277--------400102478995001420488707999899996898099996888851357644
Q 000836 1105 -NIRIWKDYDQKDKQKLV--------TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1105 -~IrIWD~~~~~g~~~lv--------sa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~ 1175 (1262)
.|++||... +..... .....+.+|...|++ ++|+|++..++++|.|+.|++||+++++ ++.++.
T Consensus 256 ~~i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~----l~fspd~~~l~S~s~D~~v~vWd~~~g~-~~~~l~ 328 (393)
T d1sq9a_ 256 GCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMS----LSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLN 328 (393)
T ss_dssp EEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred CEEEECCCCC--CEEEEEECCCCCCCCCEEEEECCCCCEEE----ECCCCCCCEEEEECCCCEEEEEECCCCC-EEEEEC
T ss_conf 2100103532--13444311566664310232023586660----0138988806987799989999999997-999998
Q ss_pred CCCCCCEE----EEEEECCCCCEEEEEE
Q ss_conf 99999826----9998749999999997
Q 000836 1176 SSSDCSIS----ALTASQVHGGQLAAGF 1199 (1262)
Q Consensus 1176 ~hs~s~It----sLs~~s~~g~lLasGs 1199 (1262)
+|.+. |. .+ .+.+++..+++++
T Consensus 329 gH~~~-v~~~~~~~-~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 329 MHCDD-IEIEEDIL-AVDEHGDSLAEPG 354 (393)
T ss_dssp CCGGG-CSSGGGCC-CBCTTSCBCSSCC
T ss_pred CCCCC-CCCCCCEE-EECCCCCEEEECC
T ss_conf 86876-13773489-9999999999831
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2.3e-16 Score=132.46 Aligned_cols=73 Identities=15% Similarity=0.302 Sum_probs=45.3
Q ss_pred CCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 889982-8999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1033 RFEKGT-KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1033 ~~~~~V-~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
.|...| +|+.| ++++|++|+.|+.|+|||..+++++..+.+|. +.|++++|+ + +.+|++|+.||.|++|+.
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s--~-~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD---GGVWALKYA--H-GGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS---SCEEEEEEE--T-TTEEEEEETTCCEEEEET
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEC--C-CCEEEEEECCCCCCCCCC
T ss_conf 837886999998--89999999189909999899993999997899---988999986--9-999999964524432111
Q ss_pred CC
Q ss_conf 78
Q 000836 1112 YD 1113 (1262)
Q Consensus 1112 ~~ 1113 (1262)
..
T Consensus 82 ~~ 83 (355)
T d1nexb2 82 KK 83 (355)
T ss_dssp TT
T ss_pred CC
T ss_conf 11
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=1.9e-16 Score=132.98 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=162.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 46889982899993799999999689939999889992888940-79999998589998541899689999379829999
Q 000836 1031 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1031 ~~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~-~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
...|...|++++|+|++++|++|+.|+.|++||+.+++.+..+. .|. ..|+++.|+ +++. +++++.|+.+++|
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~---~~v~~v~~~--~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---TMITGIKTT--SKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS---SCEEEEEEC--TTSC-EEEEETTTEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC---CCEEEEEEE--CCCE-EECCCCEEEEEEE
T ss_conf 488887828999979999999990899299999999968899837887---748998840--3311-2102310268873
Q ss_pred ECCCCCCC-CE-E-------EEEEE-----------------ECC-------CCCCCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 86787885-22-7-------74001-----------------024-------7899500142048870799989999689
Q 000836 1110 KDYDQKDK-QK-L-------VTAFS-----------------SIQ-------GHKPGVRCSNVVVDWQQQSGYLYASGEV 1156 (1262)
Q Consensus 1110 D~~~~~g~-~~-l-------vsa~~-----------------~l~-------~h~~~V~sv~l~i~wsp~~~~Llssg~D 1156 (1262)
+....... .. . +.... .+. .....+. ++.|++++..+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS----CVALSNDKQFVAVGGQD 157 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE----EEEECTTSCEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
T ss_conf 16776201110001111344321001122111112222222111111111101111233----22111111111111111
Q ss_pred CEEEEEECCCCCEEEE-EECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 8099996888851357-644999998269998749999999997899199997889981023205788788893999994
Q 000836 1157 SSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1262)
Q Consensus 1157 g~IrIWDlrs~~~~i~-ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafs 1235 (1262)
+.|++||++..+ ... ....|... |+++ .+++++.++++|+.||.|++||...+... .....+.+|..+|++++|+
T Consensus 158 g~i~~~d~~~~~-~~~~~~~~~~~~-i~~~-~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~s 233 (299)
T d1nr0a2 158 SKVHVYKLSGAS-VSEVKTIVHPAE-ITSV-AFSNNGAFLVATDQSRKVIPYSVANNFEL-AHTNSWTFHTAKVACVSWS 233 (299)
T ss_dssp SEEEEEEEETTE-EEEEEEEECSSC-EEEE-EECTTSSEEEEEETTSCEEEEEGGGTTEE-SCCCCCCCCSSCEEEEEEC
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 111111111111-111111111111-1111-11111111111111111111111111111-1111111111111111246
Q ss_pred CCCCCCEEEEECCC-CEEEEECCCC
Q ss_conf 29999899994399-5599844310
Q 000836 1236 PGLDPAKVNGTPKC-LPSFSDLIYF 1259 (1262)
Q Consensus 1236 pd~~g~~LvSgSdd-~I~iWDLryf 1259 (1262)
|+ +.+|++|+.| .+++||+...
T Consensus 234 ~~--~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 234 PD--NVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp TT--SSEEEEEETTSCEEEEETTCT
T ss_pred CC--CCCEEEECCCCEEEEEECCCC
T ss_conf 66--451388828997999989999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.4e-15 Score=124.96 Aligned_cols=196 Identities=14% Similarity=0.180 Sum_probs=146.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECC-CEEEEEECC
Q ss_conf 8998289999379999999968993999988999288894079999998589998541899689999379-829999867
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~D-G~IrIWD~~ 1112 (1262)
.+..+.++.+++++..++++. ++.+.+|+..+++.+..+..+. .+.++. +++..+++++.| +.+++|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~v~~~~~~~v~~~~~~ 149 (287)
T d1pgua2 79 FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNS----PGSAVS----LSQNYVAVGLEEGNTIQVFKLS 149 (287)
T ss_dssp CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSS----CEEEEE----ECSSEEEEEETTTSCEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCEEEEEECCCCC----EEEEEE----CCCCCEEEECCCCCEEEEEECC
T ss_conf 122101466416785699960-3321000011003543101222----035652----1475111000221000210001
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCCCCEEEEEEECC-
Q ss_conf 8788522774001024789950014204887079998999968980999968888513576-44999998269998749-
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQV- 1190 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~t-i~~hs~s~ItsLs~~s~- 1190 (1262)
. ... . ......+...+.+ ++|++++.++++++.|+.|++||+.... .... +..|... |+++ .+++
T Consensus 150 ~--~~~--~--~~~~~~~~~~v~~----~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~-v~~~-~~~p~ 216 (287)
T d1pgua2 150 D--LEV--S--FDLKTPLRAKPSY----ISISPSETYIAAGDVMGKILLYDLQSRE-VKTSRWAFRTSK-INAI-SWKPA 216 (287)
T ss_dssp E--EEE--E--EECSSCCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEECCSCCCSSC-EEEE-EECCC
T ss_pred C--CCE--E--EEEEECCCCCEEE----EEECCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCC-CCEE-EECCC
T ss_conf 2--210--0--0121024785369----9951676521101111110000002332-110001111111-1000-00136
Q ss_pred ---------CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECC
Q ss_conf ---------99999999789919999788998102320578878889399999429999899994399-55998443
Q 000836 1191 ---------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1191 ---------~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLr 1257 (1262)
++.++++|+.||.|++||++.+..... ...+|...|+++.|+++ +. +++++.| .+++|++.
T Consensus 217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~---~~~~h~~~V~~v~~~~~--~~-l~s~g~D~~v~iW~i~ 287 (287)
T d1pgua2 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK---ALNAHKDGVNNLLWETP--ST-LVSSGADACIKRWNVV 287 (287)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEE---ETTSSTTCEEEEEEEET--TE-EEEEETTSCEEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEE---EECCCCCCEEEEEECCC--CE-EEEEECCCEEEEEEEC
T ss_conf 541001267887027664999599988899975899---92787898589999899--98-9999799929999979
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=4.2e-15 Score=123.20 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=173.5
Q ss_pred CCCCCHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 954015677730602--477899999987328987899977538735356622899066777999999998305913344
Q 000836 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 460 p~~lPiVLqvLlSq~--hrlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~ 537 (1262)
.|.+|++.++|.|+. -+..|+++|++...-++-.+...+..|+++.+++++++...+++..+++++..++........
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78747899985599715899999999998541189999887413556301204568889999999999998468742047
Q ss_pred HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 64303337778875038898178999999999999519901459998644699999952179999999967789999999
Q 000836 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1262)
Q Consensus 538 dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~ 617 (1262)
.....++...++..+...+ ++.+..+|++|+.++++.+......++.+++..++.++. ++++.++..++.+
T Consensus 241 ~~~~~~~l~~l~~~l~~~d--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~v~~~al~~ 311 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-------HESTLVQTPALRA 311 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
T ss_conf 9999999999998723563--899999999987532277111100112233111011025-------7863644567777
Q ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98620276155686411382477743205999789999999995201457666788988998777599999999999999
Q 000836 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSL 697 (1262)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 697 (1262)
|+.+..+.+......+..++...+..++.++.+.||++++++|+++.. +.........+..+...+
T Consensus 312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~--------------~~~~~~~~i~~~~~l~~l 377 (503)
T d1wa5b_ 312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA--------------GNTEQIQAVIDANLIPPL 377 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--------------SCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------------CCHHHHHHHHHCCCCCHH
T ss_conf 777877888878763123409999999639978889999877888861--------------469888999971465236
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8520689943599999999999972
Q 000836 698 LTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 698 l~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
+.....+++.|++|++++++.+...
T Consensus 378 i~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 378 VKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7760268736899999999999736
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2e-16 Score=132.89 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=49.2
Q ss_pred ECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECC
Q ss_conf 70799989999689-80999968888513576449999982699987499999999978991999978899810232057
Q 000836 1143 WQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1221 (1262)
Q Consensus 1143 wsp~~~~Llssg~D-g~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~ 1221 (1262)
+++++..+++++.+ +.+++|++.... ....+.......++++ .+++++.+|++|+.||.|++||...+.... ..
T Consensus 126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~v~~~-~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~ 200 (287)
T d1pgua2 126 VSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDLKTPLRAKPSYI-SISPSETYIAAGDVMGKILLYDLQSREVKT---SR 200 (287)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEE-EEEECSSCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTTTEEEE---CC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCC-EEEEEEECCCCCEEEE-EECCCCCCCCCCCCCCCCCCEEECCCCCCC---CC
T ss_conf 521475111000221000210001221-0001210247853699-951676521101111110000002332110---00
Q ss_pred CCCCCCCEEEEEEECCC--------CCCEEEEECCC-CEEEEECC
Q ss_conf 88788893999994299--------99899994399-55998443
Q 000836 1222 HTQQVERVVGISFQPGL--------DPAKVNGTPKC-LPSFSDLI 1257 (1262)
Q Consensus 1222 ~~gH~~~V~sIafspd~--------~g~~LvSgSdd-~I~iWDLr 1257 (1262)
..+|...|.+++|+|.. ++.++++|+.| .+++||+.
T Consensus 201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 111111110000013654100126788702766499959998889
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=8.8e-16 Score=128.17 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=85.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 899828999937999999996899--399998899928889407999999858999854189968999937982999986
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg--~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
|+..|.++.|+|+++.|++++.++ .|++||.++++.. .+..|. ..|.++.|+ +++.++++++.++.+++|+.
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~---~~v~~~~~s--pdg~~l~~~~~~~~~~~~~~ 114 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL---GNVFAMGVD--RNGKFAVVANDRFEIMTVDL 114 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC---CSEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCC---CEEEEEEEC--CCCCCCCEECCCCCCCCCCC
T ss_conf 999888899989999999999289989999989999488-750897---127741211--45432100011111000001
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEE----------CCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 7878852277400102478995001420488707999899996----------898099996888851357644999998
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG----------EVSSIMLWDLEKEQQMVNPIPSSSDCS 1181 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg----------~Dg~IrIWDlrs~~~~i~ti~~hs~s~ 1181 (1262)
.. ++.. +.+..+...+.+ +.|++++..++.++ .++.+++||+..++ ... +..+...
T Consensus 115 ~~--~~~~-----~~~~~~~~~~~~----~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~-~~~~~~~- 180 (360)
T d1k32a3 115 ET--GKPT-----VIERSREAMITD----FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFA-ATTENSH- 180 (360)
T ss_dssp TT--CCEE-----EEEECSSSCCCC----EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEE-CSCSSSB-
T ss_pred CC--CCEE-----EEEECCCCCCCC----HHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCC-EEE-ECCCCCC-
T ss_conf 22--2100-----000013552023----01213225665212331211000256542663045571-353-0354322-
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 2699987499999999978991999978
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1262)
Q Consensus 1182 ItsLs~~s~~g~lLasGs~DGsVrIWDl 1209 (1262)
+..+ .++++|..|++++.|+.+++||.
T Consensus 181 ~~~~-~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 181 DYAP-AFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp EEEE-EECTTSCEEEEEESCCCCCEECS
T ss_pred CCCC-CCCCCCCEEEEEECCCCEECCCC
T ss_conf 1100-12577999999959985575333
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.6e-15 Score=123.67 Aligned_cols=203 Identities=16% Similarity=0.282 Sum_probs=145.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 68899828999937999999996899399998899928889407999999858999854189968999937982999986
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..|...|.+ ++++++++|++|+.|+.|+|||+.+++++..+.+|. +.|+++.|+ + .++++|+.||.+++|+.
T Consensus 13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~~--~--~~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMR--D--NIIISGSTDRTLKVWNA 84 (342)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---SCEEEEEEE--T--TEEEEEETTSCEEEEET
T ss_pred CCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEEC--C--CCCCCCEECCCCCCCCC
T ss_conf 886875099-999789999999189909999899997999994889---998999947--9--86321000001111111
Q ss_pred CCCCCCCE------E-------------------EEEE------------------------------------------
Q ss_conf 78788522------7-------------------7400------------------------------------------
Q 000836 1112 YDQKDKQK------L-------------------VTAF------------------------------------------ 1124 (1262)
Q Consensus 1112 ~~~~g~~~------l-------------------vsa~------------------------------------------ 1124 (1262)
........ . +..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~ 164 (342)
T d2ovrb2 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164 (342)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred CCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 10000000123330476520246522123444037874035563001110011110000013330243358986999525
Q ss_pred ------EECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf ------10247899500142048870799989999689809999688885135764499999826999874999999999
Q 000836 1125 ------SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1198 (1262)
Q Consensus 1125 ------~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasG 1198 (1262)
..+.+|.. ....+..++..+++++.|+.|++||++..+ ++..+..|... +.++ .+ +++++++|
T Consensus 165 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~~l~s~ 233 (342)
T d2ovrb2 165 ETETCLHTLQGHTN------RVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSL-TSGM-EL--KDNILVSG 233 (342)
T ss_dssp GGTEEEEEECCCSS------CEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSC-EEEE-EE--ETTEEEEE
T ss_pred CCCEEEEEECCCCC------CCCCCCCCCCEEEEEECCCEEEEEECCCCE-EEEEECCCCCC-EEEE-EC--CCCEEEEE
T ss_conf 23436678727544------421006899999999589939995255653-65674166532-0577-06--89999997
Q ss_pred ECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 789919999788998102320578878889399999429999899994399-559984431
Q 000836 1199 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1199 s~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+.||.|++||....+ ....+..+..|...+.++.++++ ++++|++| .+++||++.
T Consensus 234 s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 234 NADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp ETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEECSS----EEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEECCCCC-CCCCCCCCCEEEECEEECCCCCC----EEEEECCCCEEEEEECCC
T ss_conf 489889998655442-21112210001101000013798----449990899899999999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.70 E-value=5.5e-15 Score=122.33 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=49.2
Q ss_pred EEEEECCCCCCCEEEEEEECCCCCEEEE-------EECCCCEEEEECCCCCCEEEEE-----CCCCCCCCCEEEEEEECC
Q ss_conf 3576449999982699987499999999-------9789919999788998102320-----578878889399999429
Q 000836 1170 MVNPIPSSSDCSISALTASQVHGGQLAA-------GFVDGSVRLYDVRTPDMLVCST-----RPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1170 ~i~ti~~hs~s~ItsLs~~s~~g~lLas-------Gs~DGsVrIWDlrs~~~~v~~~-----~~~~gH~~~V~sIafspd 1237 (1262)
...++.+|... +..+ .++|++..+++ |..|++|++||+.+++...... ..+..+...|..++|+|+
T Consensus 295 ~~~~l~g~~~~-v~~v-~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD 372 (426)
T d1hzua2 295 KVAELQGQGGG-SLFI-KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372 (426)
T ss_dssp EEEEEECSSSC-CCCE-ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred EEEEEECCCCC-EEEE-ECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCC
T ss_conf 86898668876-3678-748998618885067988022887999989878767089502110256778851898799999
Q ss_pred CCCCEE-EEE----CCC-CEEEEECCC
Q ss_conf 999899-994----399-559984431
Q 000836 1238 LDPAKV-NGT----PKC-LPSFSDLIY 1258 (1262)
Q Consensus 1238 ~~g~~L-vSg----Sdd-~I~iWDLry 1258 (1262)
|+.+ +++ +++ .|.+||...
T Consensus 373 --Gk~i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 373 --GDEVWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp --SSEEEEEECCCTTSCCEEEEEETTT
T ss_pred --CCEEEEEEECCCCCCCEEEEEECCC
T ss_conf --9999999724888898299999998
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=1.7e-13 Score=111.51 Aligned_cols=240 Identities=17% Similarity=0.229 Sum_probs=166.7
Q ss_pred CCCCHHHHHHCCCHH---HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 540156777306024---77899999987328987899977538735356622899066777999999998305913344
Q 000836 461 EQLPIVLQVLLSQCH---RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1262)
Q Consensus 461 ~~lPiVLqvLlSq~h---rlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~ 537 (1262)
|.+|..++.|.+..+ +..|+..|+++....+..+...+..|+.|.++++|+++..+++..++.++++|+..++.++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999874699889999999999998639855104766446315666403568799999999999988500168999
Q ss_pred HHHCCCCHHHHHHHHC-----------------------------------------------CCCCCHHHHHHHHHHHH
Q ss_conf 6430333777887503-----------------------------------------------88981789999999999
Q 000836 538 DLVKDGGHAYFIRFLD-----------------------------------------------SMEAYPEQRAMAAFVLA 570 (1262)
Q Consensus 538 dl~k~~~~~yf~~~L~-----------------------------------------------~~~~~~e~ra~~afiLs 570 (1262)
.+...++...++..+. +.+ ++.+..++.+|+
T Consensus 136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~a~~~l~ 213 (434)
T d1q1sc_ 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND--PEVLADSCWAIS 213 (434)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHC
T ss_conf 999863005899998722321001899999999998886426422114436569999999985244--201256776640
Q ss_pred HHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf 99519901459998644699999952179999999967789999999986202761556864113824777432059997
Q 000836 571 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 650 (1262)
Q Consensus 571 ~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP 650 (1262)
.++.+.+.........+++..+..++. ++++.++..++.+|+++..+.++.+...++.++...+..++.++.+
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~-------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 286 (434)
T d1q1sc_ 214 YLTDGPNERIEMVVKKGVVPQLVKLLG-------ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 286 (434)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHT-------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH
T ss_pred CCCHHHHHHHHHHHHCCCCHHCCCCCC-------CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCH
T ss_conf 220123456777763154201000023-------4306554021221356776666778999852564057776136414
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999520145766678898899877759999999999999985206899435999999999999722
Q 000836 651 EVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1262)
Q Consensus 651 eVRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~ 723 (1262)
+||.+++++|+++... .........+..+...++.+..++++.||.++++++..+....
T Consensus 287 ~v~~~a~~~L~~l~~~--------------~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 345 (434)
T d1q1sc_ 287 NIQKEATWTMSNITAG--------------RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 345 (434)
T ss_dssp HHHHHHHHHHHHHTTS--------------CHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 6668888788652004--------------5045777766546899998775158688999999999998349
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=3e-14 Score=116.92 Aligned_cols=265 Identities=15% Similarity=0.183 Sum_probs=221.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Q ss_conf 79337989998999850399998999-------54015677730602---477899999987328987899977538735
Q 000836 435 PSPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFP 504 (1262)
Q Consensus 435 ~~~ff~~qLtafe~wL~~g~~~~~pp-------~~lPiVLqvLlSq~---hrlral~ll~~Fld~g~wAv~lals~gifp 504 (1262)
.++-.+.|+.|...+.++.+....|| |.+|.++++|.+.. -+..|+.+|++.....+..+...+..|+.|
T Consensus 86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 165 (503)
T d1wa5b_ 86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 165 (503)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
T ss_conf 49999999999999999974078843999998798499999871799999999999999999749888779999678747
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 35662289906677799999999830591334464303337778875038898178999999999999519901459998
Q 000836 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI 584 (1262)
Q Consensus 505 yvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~ 584 (1262)
+++.+|+++..+++..++++++.|+..++.++..++..++...++..+.+.+. +.+.-++++|+.++.+.........
T Consensus 166 ~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~~~~~~ 243 (503)
T d1wa5b_ 166 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQPDWSV 243 (503)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCH--HHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 89998559971589999999999854118999988741355630120456888--9999999999998468742047999
Q ss_pred HHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 64469999995217999999996778999999998620276155686411382477743205999789999999995201
Q 000836 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 585 ~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i 664 (1262)
..+++..++.++. +.+++++..+|.+|+.+..+.++.....++.++...+..++.+++++|+..++.+|+++.
T Consensus 244 ~~~~l~~l~~~l~-------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~ 316 (503)
T d1wa5b_ 244 VSQALPTLAKLIY-------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316 (503)
T ss_dssp HGGGHHHHHHHTT-------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999998723-------563899999999987532277111100112233111011025786364456777777787
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4576667889889987775999999999999998520689943599999999999972
Q 000836 665 DIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
.. .........+.++...+..+..+.++.+|++++++++.+...
T Consensus 317 ~~--------------~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~ 360 (503)
T d1wa5b_ 317 TG--------------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 360 (503)
T ss_dssp TS--------------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HH--------------HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 78--------------888787631234099999996399788899998778888614
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.69 E-value=1.5e-14 Score=119.23 Aligned_cols=197 Identities=11% Similarity=-0.037 Sum_probs=137.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEE----------C
Q ss_conf 889982899993799999999689939999889992888940799999985899985418996899993----------7
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------C 1102 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS----------~ 1102 (1262)
.+...+.+++|+|+++++++++.++.+.+|+..+++....+..+. ..+.++.|+ +++.+|+.++ .
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s--pdg~~la~~~~~~~~~~~~~~ 157 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE---AMITDFTIS--DNSRFIAYGFPLKHGETDGYV 157 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---SCCCCEEEC--TTSCEEEEEEEECSSTTCSCC
T ss_pred CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCC---CCCCCHHHC--CCEEEEEEECCCCCCCEEECC
T ss_conf 897127741211454321000111110000012221000000135---520230121--322566521233121100025
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEEEECC
Q ss_conf 9829999867878852277400102478995001420488707999899996898099996888851------3576449
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ------MVNPIPS 1176 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~------~i~ti~~ 1176 (1262)
++.+++|+... ++. ..+..+...+.. +.|++++..++.++.++.+++||...... ....+..
T Consensus 158 ~~~~~v~d~~~--~~~------~~~~~~~~~~~~----~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 225 (360)
T d1k32a3 158 MQAIHVYDMEG--RKI------FAATTENSHDYA----PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225 (360)
T ss_dssp EEEEEEEETTT--TEE------EECSCSSSBEEE----EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred CCCEEEECCCC--CCE------EEECCCCCCCCC----CCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEEC
T ss_conf 65426630455--713------530354322110----012577999999959985575333544023203641179852
Q ss_pred C------------------------------------CCCCEEEEEEECCC-------------CCEEEEEECCCCEEEE
Q ss_conf 9------------------------------------99982699987499-------------9999999789919999
Q 000836 1177 S------------------------------------SDCSISALTASQVH-------------GGQLAAGFVDGSVRLY 1207 (1262)
Q Consensus 1177 h------------------------------------s~s~ItsLs~~s~~-------------g~lLasGs~DGsVrIW 1207 (1262)
+ .+. ...+ ...++ +.+++++..++.+++|
T Consensus 226 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 303 (360)
T d1k32a3 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRMI-IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303 (360)
T ss_dssp STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEEE-EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCC-EEEE-EECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 4696012068777671553113652665400101247675-2675-4138985699997359970699964899879999
Q ss_pred ECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 788998102320578878889399999429999899994399-559984431
Q 000836 1208 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1208 Dlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
|+..++ .. . |.+.|.+++|+|| |+.|++++.| .+++||+..
T Consensus 304 d~~~~~-~~----~---~~~~v~~~~~SpD--G~~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 304 DVKTRK-VT----E---VKNNLTDLRLSAD--RKTVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp ETTTCC-EE----E---EEEEEEEEEECTT--SCEEEEEETTSCEEEEESSC
T ss_pred ECCCCE-EE----E---ECCCCCEEEECCC--CCEEEEEECCCEEEEEECCC
T ss_conf 799974-98----8---6488687999998--98999997899499999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.4e-14 Score=119.30 Aligned_cols=204 Identities=8% Similarity=-0.038 Sum_probs=113.9
Q ss_pred CCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEE----------------------
Q ss_conf 889982899993799-999999689939999889992888940799999985899985----------------------
Q 000836 1033 RFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV---------------------- 1089 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg-~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fs---------------------- 1089 (1262)
.|...|.+++|++++ .++++|+.|+.|++|+............+.. .......+.
T Consensus 54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~ 131 (342)
T d1yfqa_ 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA--NLGICRICKYGDDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC--CSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred CCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 89998899999589997899812653114542044320000011111--1111111111111111101222111020234
Q ss_pred ------------------------ECCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE-C
Q ss_conf ------------------------418996899993798299998678788522774001024789950014204887-0
Q 000836 1090 ------------------------NELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-Q 1144 (1262)
Q Consensus 1090 ------------------------n~~dg~lLvTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~w-s 1144 (1262)
-...+..+++++.||.|++|+.......... ............ ..+ .
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~ 203 (342)
T d1yfqa_ 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT----IEESGLKYQIRD----VALLP 203 (342)
T ss_dssp HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE----EEECSCSSCEEE----EEECS
T ss_pred CCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEE----EEECCCCCCEEE----EEEEC
T ss_conf 4433023000243001200000100016870246517984788760567634111----210254221014----67636
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEE---------E------ECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 7999899996898099996888851357---------6------449999982699987499999999978991999978
Q 000836 1145 QQSGYLYASGEVSSIMLWDLEKEQQMVN---------P------IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1209 (1262)
Q Consensus 1145 p~~~~Llssg~Dg~IrIWDlrs~~~~i~---------t------i~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDl 1209 (1262)
.++..+++++.++.+.+|+..... ... . ...|.. .++++ .++|++.+|++|+.||.|++||+
T Consensus 204 ~~~~~~~~~s~dg~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l-~~sp~~~~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 204 KEQEGYACSSIDGRVAVEFFDDQG-DDYNSSKRFAFRCHRLNLKDTNLAY-PVNSI-EFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp GGGCEEEEEETTSEEEEEECCTTC-CSTTCTTCEEEECCCCCTTCCSSCC-CEEEE-EECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCEEEEECCCCEEEEEEECCCC-CEEECCCCCEEEEEEECCCCCCCCC-CCEEE-EECCCCCEEEEECCCCEEEEEEC
T ss_conf 999878865489959999805986-4011123512565553147776235-43159-96698447999879998999999
Q ss_pred CCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEC-CCCEEEEEC
Q ss_conf 89981023205788788893999994299998999943-995599844
Q 000836 1210 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1210 rs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgS-dd~I~iWDL 1256 (1262)
++++ .+..+..+ ..+..++|+++ +..+++++ +|..+.|..
T Consensus 281 ~~~~-~l~~~~~~----~~~~~~~~s~~--~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 281 QTRK-KIKNFAKF----NEDSVVKIACS--DNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTTE-EEEECCCC----SSSEEEEEEEC--SSEEEEEEECTHHHHCSS
T ss_pred CCCC-EEEEECCC----CCCEEEEEEEC--CCEEEEEECCCCEEEEEE
T ss_conf 9894-98870589----99879999947--999999991992788301
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=1.9e-13 Score=111.05 Aligned_cols=58 Identities=14% Similarity=-0.035 Sum_probs=27.9
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEC------CCCEEEEECC
Q ss_conf 999999997899199997889981023205788788893999994299998999943------9955998443
Q 000836 1191 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP------KCLPSFSDLI 1257 (1262)
Q Consensus 1191 ~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgS------dd~I~iWDLr 1257 (1262)
++..+++++.|+.+++||..... ...+|...+..++|+|+ |++++.+. ++.|.+||..
T Consensus 339 Dg~~la~~s~d~~~k~w~~~~~~-------~l~~~~~~v~~~~fS~D--G~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 339 DIKAMTGDGSDPEFKTLPIAEWA-------GITEGQPRVVQGEFNKD--GTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHH-------TCCSSCCEEEEEEECTT--SSEEEEEEECCTTSCCEEEEEETT
T ss_pred ECHHHCCCCCCCCEEECCCCCCC-------CCCCCCCCEEEEEECCC--CCEEEEEEECCCCCCCCEEEEECC
T ss_conf 62461045567844863343444-------45789986897679899--999999970488888868999999
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-13 Score=112.73 Aligned_cols=187 Identities=17% Similarity=0.129 Sum_probs=169.1
Q ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH
Q ss_conf 30602477899999987328987899977538735356-62289906677799999999830591334464303337778
Q 000836 470 LLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVL-KLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1262)
Q Consensus 470 LlSq~hrlral~ll~~Fld~g~wAv~lals~gifpyvl-kLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf 548 (1262)
-.++..+..|+..|..+++-..+|+.+. ..|+++.++ .+|.++..++|..++.+++.++...+.+|..++..++++.+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHH-HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7999999999999999976978899999-869999999998379999999999999999998888888999972763799
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 87503889817899999999999951990145999864469999995217999999996778999999998620276155
Q 000836 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1262)
Q Consensus 549 ~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~ 628 (1262)
+..|++... ++.|..++++|+.++.+++.++......|.+..++.+|. ++++.++.+++.+|++++.+.++.
T Consensus 107 v~lL~~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~-------~~~~~~~~~a~~~L~~l~~~~~~~ 178 (264)
T d1xqra1 107 LRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-------QQVQKLKVKSAFLLQNLLVGHPEH 178 (264)
T ss_dssp HHHHHHCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-------SSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999604998-999999999999874244026789987201268899880-------586578899999999987445778
Q ss_pred HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 6864113824777432059997899999999952014
Q 000836 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1262)
Q Consensus 629 ~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~ 665 (1262)
+....+.++...|..++.+++++||..++.+|+++..
T Consensus 179 ~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888876468999999739998999999999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.53 E-value=6.7e-11 Score=92.45 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=116.6
Q ss_pred CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCC-EEEEEECCCEEEEEECC
Q ss_conf 99828999937999999-99689939999889992888940799999985899985418996-89999379829999867
Q 000836 1035 EKGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lv-sgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~-lLvTgS~DG~IrIWD~~ 1112 (1262)
+..+..++|+|++++++ ++..++.|++||+.+++.+..+..+. .+..+.|+ +++. .++++..++.+.+|+..
T Consensus 31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 104 (301)
T d1l0qa2 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQGVAVS--PDGKQVYVTNMASSTLSVIDTT 104 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEEEEEC--TTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC----CCCCCCCC--CCCCCCCCCCCCCCEEEECCCC
T ss_conf 99836999928989999997899989999999894103200024----64311000--1111111111111001100124
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCC--------------------------------------CCEEEEECCCCCEEEEEE
Q ss_conf 878852277400102478995001--------------------------------------420488707999899996
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRC--------------------------------------SNVVVDWQQQSGYLYASG 1154 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~s--------------------------------------v~l~i~wsp~~~~Llssg 1154 (1262)
. ++. . ..+..+ ..... ....+.+++++..+++++
T Consensus 105 ~--~~~--~---~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 105 S--NTV--A---GTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp T--TEE--E---EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred C--CEE--E---EECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEC
T ss_conf 3--024--3---202444-4423787605897155420111100110001463035315678842888604654013101
Q ss_pred C-CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCCEEEEECCCCCCCCCEE
Q ss_conf 8-980999968888513576449999982699987499999999978---991999978899810232057887888939
Q 000836 1155 E-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1230 (1262)
Q Consensus 1155 ~-Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~ 1230 (1262)
. .+.+.+|+..... ....+..+.. ...+ .+.+++..++.+.. ++.|++||..+++ ....+.. ...+.
T Consensus 177 ~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~~----~~~~~ 247 (301)
T d1l0qa2 177 FDSMSISVIDTVTNS-VIDTVKVEAA--PSGI-AVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPV----GPDPA 247 (301)
T ss_dssp TTTTEEEEEETTTTE-EEEEEECSSE--EEEE-EECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEEC----CSSEE
T ss_pred CCCCCCCCCCCCCEE-EEECCCCCCC--CCEE-ECCCCCCCCCCCCCCCEEEEEEEEECCCCE-EEEEECC----CCCEE
T ss_conf 211111111111000-1110133577--5031-101111011110021000023236569981-9999848----99877
Q ss_pred EEEEECCCCCCEE-EEECCC-CEEEEECCC
Q ss_conf 9999429999899-994399-559984431
Q 000836 1231 GISFQPGLDPAKV-NGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1231 sIafspd~~g~~L-vSgSdd-~I~iWDLry 1258 (1262)
+++|+|+ ++.| ++++.+ .+.+||+..
T Consensus 248 ~va~spd--g~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 248 GIAVTPD--GKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp EEEECTT--SSEEEEEETTTTEEEEEETTT
T ss_pred EEEEECC--CCEEEEEECCCCEEEEEECCC
T ss_conf 9999189--899999989999699999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-11 Score=97.99 Aligned_cols=149 Identities=19% Similarity=0.315 Sum_probs=116.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 88998289999379999999968993999988999288894079999998589998541899689999379829999867
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
.+...+.++.+. ...+++++.|+.|++||..+++.+..+.++. ..+..+.+. +..+++++.||.|++||..
T Consensus 136 ~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~----~~~l~~~~~dg~i~i~d~~ 206 (293)
T d1p22a2 136 GHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR----DRLVVSGSSDNTIRLWDIE 206 (293)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEEEEEE----TTEEEEEETTSCEEEEETT
T ss_pred CCCCCCCCCEEC--CCCCCCCCCCCCEEEECCCCCCEEEEECCCC---CCCCCCCCC----CCEEEEECCCCEEEEEECC
T ss_conf 113543110000--0220110699860410078883889971554---453221689----8758876589989998665
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCCCEE
Q ss_conf 878852277400102478995001420488707999899996898099996888---------85135764499999826
Q 000836 1113 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---------EQQMVNPIPSSSDCSIS 1183 (1262)
Q Consensus 1113 ~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs---------~~~~i~ti~~hs~s~It 1183 (1262)
. ... + ....++...+. .+..++..+++++.|+.|++||++. .. ++..+.+|.+. |+
T Consensus 207 ~--~~~--~---~~~~~~~~~v~------~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~H~~~-V~ 271 (293)
T d1p22a2 207 C--GAC--L---RVLEGHEELVR------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL-CLRTLVEHSGR-VF 271 (293)
T ss_dssp T--CCE--E---EEECCCSSCEE------EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT-EEEEECCCSSC-CC
T ss_pred C--CEE--E---EEECCCCEEEE------ECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCE-EEEEECCCCCC-EE
T ss_conf 5--614--6---65214310000------014541079998679979999888886444567754-55784588998-89
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9998749999999997899199997
Q 000836 1184 ALTASQVHGGQLAAGFVDGSVRLYD 1208 (1262)
Q Consensus 1184 sLs~~s~~g~lLasGs~DGsVrIWD 1208 (1262)
++ .+ ++.+|++|+.||+|++||
T Consensus 272 ~v-~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 272 RL-QF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CE-EE--CSSCEEECCSSSEEEEEC
T ss_pred EE-EE--CCCEEEEEECCCEEEEEC
T ss_conf 99-97--199999992299899959
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=3.7e-11 Score=94.35 Aligned_cols=196 Identities=12% Similarity=0.095 Sum_probs=112.7
Q ss_pred CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCC--CCCEEEEEEEECCCCCEEEEEEC----------
Q ss_conf 9828999937999999-9968993999988999288894079999--99858999854189968999937----------
Q 000836 1036 KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASC---------- 1102 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lv-sgs~dg~I~IWD~~tg~~l~~l~~h~~~--~~~ItsL~fsn~~dg~lLvTgS~---------- 1102 (1262)
..+..++|+|++++++ +++.++.|.+||+.+++.+..+..+... +..+..+.|+ +++..++++..
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s--~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS--PDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC--TTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEC--CCCCEEEEEECCCCCEEEECC
T ss_conf 982379999998999999789994999999999298887247773125402548986--877579995047762034203
Q ss_pred --CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---
Q ss_conf --982999986787885227740010247899500142048870799989999689809999688885135764499---
Q 000836 1103 --NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS--- 1177 (1262)
Q Consensus 1103 --DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~h--- 1177 (1262)
++.+.+||... +.. . +.+. ....+.. +.|++++..+++++.+ +.+||....+ ....+..+
T Consensus 112 ~~~~~~~~~d~~~--~~~--~---~~~~-~~~~~~~----~~~s~dg~~l~~~~~~--~~~~d~~~~~-~~~~~~~~~~~ 176 (337)
T d1pbyb_ 112 VQPTRVALYDAET--LSR--R---KAFE-APRQITM----LAWARDGSKLYGLGRD--LHVMDPEAGT-LVEDKPIQSWE 176 (337)
T ss_dssp ECCCEEEEEETTT--TEE--E---EEEE-CCSSCCC----EEECTTSSCEEEESSS--EEEEETTTTE-EEEEECSTTTT
T ss_pred CCCCCEEECCCCC--CEE--E---EECC-CCCCCEE----EEECCCCCEEEEECCC--CCEEEEECCC-EEEEEECCCCC
T ss_conf 4555212035667--759--8---8414-5687218----9986888889997177--5056630372-78886147754
Q ss_pred --------------------------------------------------------------CCCCEEEEEEECCCCCEE
Q ss_conf --------------------------------------------------------------999826999874999999
Q 000836 1178 --------------------------------------------------------------SDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1178 --------------------------------------------------------------s~s~ItsLs~~s~~g~lL 1195 (1262)
....+..+ .+.+++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST-AVNPAKTRA 255 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE-EECTTSSEE
T ss_pred CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEE-EECCCCEEE
T ss_conf 3311357763140146653124663244410366045403676179998688858889832887505888-742661399
Q ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCC-CEEEEECCC
Q ss_conf 999789919999788998102320578878889399999429999899994399-559984431
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1196 asGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+.+ ++.+++||..+++ .+... .+ ...+.+++|+|+ |+.|++++.+ .+.+||...
T Consensus 256 ~~~--~~~i~v~d~~~~~-~~~~~-~~---~~~~~~~~~s~d--G~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 256 FGA--YNVLESFDLEKNA-SIKRV-PL---PHSYYSVNVSTD--GSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEE--ESEEEEEETTTTE-EEEEE-EC---SSCCCEEEECTT--SCEEEEESBSSEEEEEETTT
T ss_pred EEC--CCCEEEEECCCCC-EEEEE-CC---CCCEEEEEECCC--CCEEEEEECCCCEEEEECCC
T ss_conf 973--5528999898896-99997-48---998899999789--99999994999299999998
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=1.8e-10 Score=89.36 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=89.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 89999998732898789997753873535662289906677799999999830591334464303337778875038898
Q 000836 478 RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEA 557 (1262)
Q Consensus 478 ral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~ 557 (1262)
.++..|++.....+.........|++|.+++++.++..+++..++.++..++..+......+++.++...+...|.+++
T Consensus 207 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~- 285 (434)
T d1q1sc_ 207 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK- 285 (434)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC-
T ss_conf 6776640220123456777763154201000023430655402122135677666677899985256405777613641-
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHCCC
Q ss_conf 178999999999999519901459998644699999952179999999967789999999986202761-5568641138
Q 000836 558 YPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRAD 636 (1262)
Q Consensus 558 ~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~-~~~~~~~~~~ 636 (1262)
++.|..++++|+.++...........+.+++..++..+. ++++.+|..++.+|+++....+ +....-++.+
T Consensus 286 -~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~-------~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~ 357 (434)
T d1q1sc_ 286 -TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS-------KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357 (434)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-------SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf -466688887886520045045777766546899998775-------158688999999999998349999999999897
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 2477743205999789999999995201
Q 000836 637 APAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 637 ~~~~l~~ll~D~sPeVRaa~v~aL~~~i 664 (1262)
+...|..++.+..++++..++.+|.+++
T Consensus 358 ~i~~L~~ll~~~d~~~~~~~l~~l~~ll 385 (434)
T d1q1sc_ 358 IIEPLMNLLSAKDTKIIQVILDAISNIF 385 (434)
T ss_dssp CHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 6999999865999899999999999999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.42 E-value=5.5e-11 Score=93.10 Aligned_cols=90 Identities=9% Similarity=-0.015 Sum_probs=48.0
Q ss_pred EEEEEECCCCCEEEEEE-CCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 09999688885135764-49999982699987499999999978991999978899810232057887888939999942
Q 000836 1158 SIMLWDLEKEQQMVNPI-PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1236 (1262)
Q Consensus 1158 ~IrIWDlrs~~~~i~ti-~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafsp 1236 (1262)
.+.+||..... ..... ..+... +.++ ...+++..++.+. ++.|++||..+++ .+... .. ...+.+++|+|
T Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~v~v~d~~~~~-~~~~~-~~---~~~~~~va~s~ 301 (346)
T d1jmxb_ 231 GYLSVDLKTGK-THTQEFADLTEL-YFTG-LRSPKDPNQIYGV-LNRLAKYDLKQRK-LIKAA-NL---DHTYYCVAFDK 301 (346)
T ss_dssp EEEEEETTTCC-EEEEEEEECSSC-EEEE-EECSSCTTEEEEE-ESEEEEEETTTTE-EEEEE-EC---SSCCCEEEECS
T ss_pred EEEEEECCCCC-EEEEEEECCCCE-EEEE-EEECCCCEEEEEC-CCEEEEEECCCCC-EEEEE-CC---CCCEEEEEECC
T ss_conf 49999777883-687876315660-6888-9717997899942-9838999899993-99997-49---99778999968
Q ss_pred CCCCCEEEEECCC-CEEEEECCC
Q ss_conf 9999899994399-559984431
Q 000836 1237 GLDPAKVNGTPKC-LPSFSDLIY 1258 (1262)
Q Consensus 1237 d~~g~~LvSgSdd-~I~iWDLry 1258 (1262)
+ ++.+++++.+ .+.+||...
T Consensus 302 D--G~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 302 K--GDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp S--SSCEEEESBSSEEEEEETTT
T ss_pred C--CCEEEEEECCCCEEEEECCC
T ss_conf 9--99999994899299999965
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.38 E-value=3.2e-11 Score=94.79 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=119.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEE-EEEECCCEEEEEE
Q ss_conf 8899828999937999999996-8993999988999288894079999998589998541899689-9993798299998
Q 000836 1033 RFEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWK 1110 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs-~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lL-vTgS~DG~IrIWD 1110 (1262)
.++..+..+.|+|++.+++++. .+..+.+++..+++.+..+.....+ .......+.....+... ...+.|+.+.+|+
T Consensus 204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~ 282 (426)
T d1hzua2 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282 (426)
T ss_dssp ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC-CCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCC-CCCCEEEEECCCCCCEEEECCCCCCEEEEEE
T ss_conf 667753761377888678864201100000002556278875058744-4342011006987745774157896598852
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEE-------ECCCEEEEEECCCCCEEEEEEC--------
Q ss_conf 6787885227740010247899500142048870799989999-------6898099996888851357644--------
Q 000836 1111 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-------GEVSSIMLWDLEKEQQMVNPIP-------- 1175 (1262)
Q Consensus 1111 ~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llss-------g~Dg~IrIWDlrs~~~~i~ti~-------- 1175 (1262)
................+.+|...+.. +.++|++..+++. +.+++|++||+.+.+ +..++.
T Consensus 283 ~~~~~~~~~~~~~~~~l~g~~~~v~~----v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~-~~~~~~~~~~~~~~ 357 (426)
T d1hzua2 283 TDPKNHPQYAWKKVAELQGQGGGSLF----IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD-AKYQVLPIAEWADL 357 (426)
T ss_dssp CCTTTCTTTBTSEEEEEECSSSCCCC----EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT-SCCEEECHHHHHCC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEE----EECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC-CCEEEECCCHHCCC
T ss_conf 25665203302586898668876367----87489986188850679880228879999898787-67089502110256
Q ss_pred -CCCCCCEEEEEEECCCCCEEE-EE----ECCCCEEEEECCCCCCEEEEE
Q ss_conf -999998269998749999999-99----789919999788998102320
Q 000836 1176 -SSSDCSISALTASQVHGGQLA-AG----FVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1176 -~hs~s~ItsLs~~s~~g~lLa-sG----s~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
.+... +.++ .|+++|+.++ ++ ..+|.|+|||.++.+ ....+
T Consensus 358 ~~~~~r-v~~~-~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k-~~~~i 404 (426)
T d1hzua2 358 GEGAKR-VVQP-EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK-LKAVV 404 (426)
T ss_dssp CSSCCC-EEEE-EECSSSSEEEEEECCCTTSCCEEEEEETTTTE-EEEEE
T ss_pred CCCCCC-EEEE-EECCCCCEEEEEEECCCCCCCEEEEEECCCCE-EEEEE
T ss_conf 778851-8987-99999999999972488889829999999873-89998
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=4.7e-10 Score=86.26 Aligned_cols=190 Identities=10% Similarity=-0.016 Sum_probs=108.5
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 99999689939999889992888940799999985899985418996899993798299998678788522774001024
Q 000836 1049 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1128 (1262)
Q Consensus 1049 ~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~ 1128 (1262)
++++.+.+|.|.|||..+++++..+..+. .+..+.|+ +||+++++++.||.|++||+.+ ++...+.......
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fS--pDG~~l~~~s~dg~v~~~d~~t--~~~~~~~~i~~~~ 105 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRLS--ASGRYLFVIGRDGKVNMIDLWM--KEPTTVAEIKIGS 105 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEEC--TTSCEEEEEETTSEEEEEETTS--SSCCEEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC----CEEEEEEC--CCCCEEEEECCCCCEEEEEEEC--CCCEEEEEEECCC
T ss_conf 99997699979999899983999973799----71379988--9999999982899978998108--9812889984488
Q ss_pred CCCCCCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCC----------CCEEEEEEECCCCCEE-E
Q ss_conf 7899500142048870799989999-68980999968888513576449999----------9826999874999999-9
Q 000836 1129 GHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSD----------CSISALTASQVHGGQL-A 1196 (1262)
Q Consensus 1129 ~h~~~V~sv~l~i~wsp~~~~Llss-g~Dg~IrIWDlrs~~~~i~ti~~hs~----------s~ItsLs~~s~~g~lL-a 1196 (1262)
+|...+.+ ..|++++.+++++ +.++.|++||..+.+ ++..+..+.. .....+ .+++++..+ +
T Consensus 106 ~~~~~~~s----~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg~~~~v 179 (432)
T d1qksa2 106 EARSIETS----KMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAI-LASHYRPEFIV 179 (432)
T ss_dssp EEEEEEEC----CSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEE-EECSSSSEEEE
T ss_pred CCCCEEEE----CCCCCCCCEEEEECCCCCEEEEEECCCCC-CEEEECCCCCCCCCEECCCCCCEEEE-EECCCCCEEEE
T ss_conf 98776984----32188888899981789827999076554-22540247764352201688850589-98789998999
Q ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECC--CCEEEEECC
Q ss_conf 9978991999978899810232057887888939999942999989999439--955998443
Q 000836 1197 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK--CLPSFSDLI 1257 (1262)
Q Consensus 1197 sGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSd--d~I~iWDLr 1257 (1262)
+...++.|.+||....+.. ... .. .+...+..+.|+|+ ++++++++. +.+.++|..
T Consensus 180 s~~~~~~i~~~d~~~~~~~-~~~-~i-~~g~~~~~~~~spd--g~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNL-KTT-EI-SAERFLHDGGLDGS--HRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp EETTTTEEEEEETTCSSEE-EEE-EE-ECCSSEEEEEECTT--SCEEEEEEGGGTEEEEEETT
T ss_pred EECCCCEEEEEECCCCCCC-EEE-EE-CCCCCCCCCEECCC--CCEEEEECCCCCEEEEEECC
T ss_conf 9816882999984378752-279-98-33675426538898--87999951666367776144
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.34 E-value=2.6e-09 Score=80.81 Aligned_cols=163 Identities=12% Similarity=0.188 Sum_probs=119.8
Q ss_pred CCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECC-CEEEEEEC
Q ss_conf 89982899993799999999-68993999988999288894079999998589998541899689999379-82999986
Q 000836 1034 FEKGTKTALLQPFSPIVVAA-DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsg-s~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~D-G~IrIWD~ 1111 (1262)
....+.++.|+|++..++.+ ..++.+.+|+..+...+..+..+. .+..+.++ +++..+++++.+ +.+.+|+.
T Consensus 114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 187 (301)
T d1l0qa2 114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR----SPKGIAVT--PDGTKVYVANFDSMSISVIDT 187 (301)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS----SEEEEEEC--TTSSEEEEEETTTTEEEEEET
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCC----CCEEEEEE--CCCCCEEEECCCCCCCCCCCC
T ss_conf 444423787605897155420111100110001463035315678----84288860--465401310121111111111
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEE---CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 7878852277400102478995001420488707999899996---8980999968888513576449999982699987
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg---~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~ 1188 (1262)
.. .. .. ..... ...... +.+.+++..+++++ .++.|.+||..+.+ .+..+..+.. +.++ ++
T Consensus 188 ~~--~~--~~---~~~~~-~~~~~~----~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~~~~~--~~~v-a~ 251 (301)
T d1l0qa2 188 VT--NS--VI---DTVKV-EAAPSG----IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIPVGPD--PAGI-AV 251 (301)
T ss_dssp TT--TE--EE---EEEEC-SSEEEE----EEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEECCSS--EEEE-EE
T ss_pred CC--EE--EE---ECCCC-CCCCCE----EECCCCCCCCCCCCCCCEEEEEEEEECCCCE-EEEEECCCCC--EEEE-EE
T ss_conf 10--00--11---10133-577503----1101111011110021000023236569981-9999848998--7799-99
Q ss_pred CCCCCEE-EEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 4999999-999789919999788998102320
Q 000836 1189 QVHGGQL-AAGFVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1189 s~~g~lL-asGs~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
+++|+.+ +++..|+.|++||+.+++ .+..+
T Consensus 252 spdg~~l~va~~~~~~i~v~D~~t~~-~~~~~ 282 (301)
T d1l0qa2 252 TPDGKKVYVALSFCNTVSVIDTATNT-ITATM 282 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTE-EEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCE-EEEEE
T ss_conf 18989999998999969999999995-99999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1e-09 Score=83.86 Aligned_cols=212 Identities=12% Similarity=0.155 Sum_probs=100.5
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEC-CCEEEEEEC
Q ss_conf 899828999937999999996-899399998899928889407999999858999854189968999937-982999986
Q 000836 1034 FEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1111 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs-~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~-DG~IrIWD~ 1111 (1262)
++..+..++|+|++++|++++ .++.|.+|++........+..+...+..+..+.|+ +|++++++++. ++.|.+|+.
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s--pDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD--HQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC--TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEC--CCCCEEEECCCCCCCEEEECC
T ss_conf 799886899958979999997789969999996898707985301369985499995--999887420568883022001
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCC---------------------------------------------CCEEEEECCC
Q ss_conf 7878852277400102478995001---------------------------------------------4204887079
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRC---------------------------------------------SNVVVDWQQQ 1146 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~s---------------------------------------------v~l~i~wsp~ 1146 (1262)
.. ...... .....+...+.+ ....+.|+++
T Consensus 113 ~~--~~~~~~---~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~ 187 (333)
T d1ri6a_ 113 ED--GLPVGV---VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187 (333)
T ss_dssp ET--TEEEEE---EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred CC--CCCEEC---CCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECC
T ss_conf 11--000000---1003778531498863010131025655420568973268741001000133403887527999602
Q ss_pred CCEEEEEE-CCCEEEEEECCCCCE---EEEEE---CCC--CCCCEEEEEEECCCCCEE-EEEECCCCEEEEECCCCCCEE
Q ss_conf 99899996-898099996888851---35764---499--999826999874999999-999789919999788998102
Q 000836 1147 SGYLYASG-EVSSIMLWDLEKEQQ---MVNPI---PSS--SDCSISALTASQVHGGQL-AAGFVDGSVRLYDVRTPDMLV 1216 (1262)
Q Consensus 1147 ~~~Llssg-~Dg~IrIWDlrs~~~---~i~ti---~~h--s~s~ItsLs~~s~~g~lL-asGs~DGsVrIWDlrs~~~~v 1216 (1262)
+..++... ..+...+|+...... ....+ ... .......+ .++++++.+ +++..++.+.+|+........
T Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T d1ri6a_ 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI-HITPDGRHLYACDRTASLITVFSVSEDGSVL 266 (333)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE-EECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEE-EEECCCCCEEEECCCCCEEEEEEECCCCCEE
T ss_conf 014786204667217885103555202100223430687765531268-9951567205504568827878873999789
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCEEEEEC-C-CCEEEEEC
Q ss_conf 3205788788893999994299998999943-9-95599844
Q 000836 1217 CSTRPHTQQVERVVGISFQPGLDPAKVNGTP-K-CLPSFSDL 1256 (1262)
Q Consensus 1217 ~~~~~~~gH~~~V~sIafspd~~g~~LvSgS-d-d~I~iWDL 1256 (1262)
... ........+.+++|+|+ |++|++++ + +.+.+|++
T Consensus 267 ~~~-~~~~~~~~p~~~a~spD--Gk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 267 SKE-GFQPTETQPRGFNVDHS--GKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEE-EEEECSSSCCCEEECTT--SSEEEEECTTTCEEEEEEE
T ss_pred EEE-EEECCCCCEEEEEEECC--CCEEEEEECCCCEEEEEEE
T ss_conf 999-99678997628999079--8999999889993999999
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=8.5e-09 Score=77.05 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=184.0
Q ss_pred CCCCCCHHHHHHCCCH---HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 9954015677730602---4778999999873289878999775387353566228990667779999999983059133
Q 000836 459 PPEQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1262)
Q Consensus 459 pp~~lPiVLqvLlSq~---hrlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~ 535 (1262)
.++..|.++++|..+. -+..|+..|.++- .++..+...+..|+.|-++++|.++.++++..++..+..++...+.+
T Consensus 57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 135 (529)
T d1jdha_ 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 13399999999847999999999999999995-89166999998798999999857979899999999999865132011
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 44643033377788750388981789999999999995199014599986446999999521799999999677899999
Q 000836 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1262)
Q Consensus 536 Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~ 615 (1262)
|......+++..++..|.+.+ ++.+..++.+|..++.+....+......|.+..+...+.. .+.+.++..++
T Consensus 136 ~~~~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~~~~ 207 (529)
T d1jdha_ 136 KMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT------YTYEKLLWTTS 207 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHH
T ss_conf 367876588148999887057--6888888999988763004788888760563689999986------10489999999
Q ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99986202761556864113824777432059997899999999952014576667889889987775999999999999
Q 000836 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1262)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1262)
-++..+.. .++.+...++.++...+..++.+++++++..++.+|.++-..... ... ......
T Consensus 208 ~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~----------~~~-------~~~~i~ 269 (529)
T d1jdha_ 208 RVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----------QEG-------MEGLLG 269 (529)
T ss_dssp HHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT----------CSC-------CHHHHH
T ss_pred HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----------HHH-------HHHCCH
T ss_conf 98751101-332330456543334699986254015553015677750432110----------256-------640101
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99852068994359999999999997
Q 000836 696 SLLTVVSDGSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 696 ~ll~~~~D~sp~VR~E~~~~ls~~~~ 721 (1262)
.|+.++.+.++.++..++.++..+..
T Consensus 270 ~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 270 TLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 44541245428899999998875012
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=1.6e-08 Score=75.10 Aligned_cols=167 Identities=9% Similarity=0.067 Sum_probs=109.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCC------------------EEEEEEEECCCCC
Q ss_conf 8998289999379999999968993999988999288894079999998------------------5899985418996
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG------------------ISKLCLVNELDVS 1095 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~------------------ItsL~fsn~~dg~ 1095 (1262)
....+..+.|++++.++++++ +.+.+||..+++....+..+...... +.........+..
T Consensus 133 ~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T d1pbyb_ 133 APRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp CCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred CCCCCEEEEECCCCCEEEEEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCC
T ss_conf 568721899868888899971--775056630372788861477543311357763140146653124663244410366
Q ss_pred EEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 89999379829999867878852277400102478995001420488707999899996898099996888851357644
Q 000836 1096 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1096 lLvTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~ 1175 (1262)
....+..++.+.+|+... +.... .....+...... ..+++++..++.+ ++.|++||+.+.+ .+..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~i~v~d~~~~~-~~~~~~ 277 (337)
T d1pbyb_ 211 PADPTAYRTGLLTMDLET--GEMAM----REVRIMDVFYFS----TAVNPAKTRAFGA--YNVLESFDLEKNA-SIKRVP 277 (337)
T ss_dssp TTSGGGEEEEEEEEETTT--CCEEE----EEEEECSSCEEE----EEECTTSSEEEEE--ESEEEEEETTTTE-EEEEEE
T ss_pred EEEECCCCCCEEEEECCC--CCEEE----EEECCCCCCEEE----EEECCCCEEEEEC--CCCEEEEECCCCC-EEEEEC
T ss_conf 045403676179998688--85888----983288750588----8742661399973--5528999898896-999974
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 99999826999874999999999789919999788998102320
Q 000836 1176 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1176 ~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
.... +.++ .++++|..+++|+.||.|++||..+.+ .+..+
T Consensus 278 ~~~~--~~~~-~~s~dG~~l~v~~~~~~i~v~D~~t~~-~v~~i 317 (337)
T d1pbyb_ 278 LPHS--YYSV-NVSTDGSTVWLGGALGDLAAYDAETLE-KKGQV 317 (337)
T ss_dssp CSSC--CCEE-EECTTSCEEEEESBSSEEEEEETTTCC-EEEEE
T ss_pred CCCC--EEEE-EECCCCCEEEEEECCCCEEEEECCCCC-EEEEE
T ss_conf 8998--8999-997899999999499929999999876-98999
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.5e-09 Score=79.11 Aligned_cols=206 Identities=14% Similarity=0.116 Sum_probs=156.2
Q ss_pred HCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 5387353566228990667779999999983059133446430333777887-503889817899999999999951990
Q 000836 499 SVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIR-FLDSMEAYPEQRAMAAFVLAVIVDGHR 577 (1262)
Q Consensus 499 s~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~-~L~~~~~~~e~ra~~afiLs~l~~~~~ 577 (1262)
+....|-.....++...|.|.-+.=.++.++.. .....++.+-+|+...+. .|++++ ++.|.-+|.+|+.++.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~--~~vr~~A~~~L~~l~~~~~ 91 (264)
T d1xqra1 15 SQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQNVA 91 (264)
T ss_dssp HSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTCH
T ss_pred HCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 546863177765079999999999999999769-7889999986999999999837999--9999999999999998888
Q ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 14599986446999999521799999999677899999999862027615568641138247774320599978999999
Q 000836 578 RGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAV 657 (1262)
Q Consensus 578 ~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v 657 (1262)
..|....+.+++..++.+|.. ++++++|.-++.+|+.+..+++..+...+..+....+..++.++.+.|+..++
T Consensus 92 ~~~~~~~~~~~i~~Lv~lL~~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~ 165 (264)
T d1xqra1 92 AIQEQVLGLGALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 165 (264)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 888999972763799999604------99899999999999987424402678998720126889988058657889999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9995201457666788988998777599999999999999852068994359999999999997223568
Q 000836 658 FSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHL 727 (1262)
Q Consensus 658 ~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~~f 727 (1262)
.+|+++.... .+......+.+....|+.++.++++.+|..++.++..+........
T Consensus 166 ~~L~~l~~~~--------------~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 221 (264)
T d1xqra1 166 FLLQNLLVGH--------------PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 221 (264)
T ss_dssp HHHHHHHHHC--------------GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCC--------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999987445--------------7788888876468999999739998999999999999986488999
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.6e-08 Score=74.99 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=161.8
Q ss_pred CCCHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 4015677730602--47789999998732898789997753873535662289-90667779999999983059133446
Q 000836 462 QLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT-TTPELRQILVFIWTKILALDKSCQVD 538 (1262)
Q Consensus 462 ~lPiVLqvLlSq~--hrlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs-~a~elr~~lvFIwa~il~~d~s~Q~d 538 (1262)
-.|-+.++|-+.. -+.+|+..|+++....+.........|+.+.++++|+. ...+.+...+.++..++. +..++..
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 96 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCHHHHH
T ss_conf 999999987299999999999999999845577899987133999999998479999999999999999958-9166999
Q ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 43033377788750388981789999999999995199014599986446999999521799999999677899999999
Q 000836 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1262)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~L 618 (1262)
.++.++...++..|.+++ ++.+..|+..|+.++.+.+..+....+.|.+..++.+|+ +++++++..++.+|
T Consensus 97 i~~~g~i~~Li~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCL 167 (529)
T ss_dssp HHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-------CCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-------CCCHHHHHHHHHHH
T ss_conf 998798999999857979--899999999999865132011367876588148999887-------05768888889999
Q ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8620276155686411382477743205-999789999999995201457666788988998777599999999999999
Q 000836 619 GKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSL 697 (1262)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sPeVRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 697 (1262)
+.+....++.+......+....+..++. ...+.++..++.++.++... .+-.....+......|
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~---------------~~~~~~~~~~g~~~~L 232 (529)
T d1jdha_ 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---------------SSNKPAIVEAGGMQAL 232 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---------------TTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHH
T ss_conf 8876300478888876056368999998610489999999987511013---------------3233045654333469
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 85206899435999999999999
Q 000836 698 LTVVSDGSPLVRAEVAVALARFA 720 (1262)
Q Consensus 698 l~~~~D~sp~VR~E~~~~ls~~~ 720 (1262)
..+..++++.++..++..+..+.
T Consensus 233 ~~ll~~~~~~~~~~a~~~l~~ls 255 (529)
T d1jdha_ 233 GLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99862540155530156777504
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.16 E-value=1.4e-08 Score=75.43 Aligned_cols=171 Identities=9% Similarity=-0.043 Sum_probs=110.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEE------------------------EC
Q ss_conf 982899993799999999689939999889992888940799999985899985------------------------41
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV------------------------NE 1091 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fs------------------------n~ 1091 (1262)
..+..+.+.+++..++. ++.+.+|+..+++.+..+..+... ..+.++ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (346)
T d1jmxb_ 145 RQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWN----RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217 (346)
T ss_dssp SSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCC----CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred CCEEEEEECCCCEEEEE---CCCCEEEECCCCCEEEEEECCCCC----CCEEEECCCCEEEEEECCCCCEEEEEEEEEEC
T ss_conf 74399995278789984---796269980699789999648986----62377125528999864998167651231112
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 89968999937982999986787885227740010247899500142048870799989999689809999688885135
Q 000836 1092 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1171 (1262)
Q Consensus 1092 ~dg~lLvTgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i 1171 (1262)
.....+.++..++.+.+|+... +.... .....+...+.. +.+++++..++.... +.|.+||..+++ .+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~v~v~d~~~~~-~~ 285 (346)
T d1jmxb_ 218 DDKQDPATADLLYGYLSVDLKT--GKTHT----QEFADLTELYFT----GLRSPKDPNQIYGVL-NRLAKYDLKQRK-LI 285 (346)
T ss_dssp ------CCCEEEEEEEEEETTT--CCEEE----EEEEECSSCEEE----EEECSSCTTEEEEEE-SEEEEEETTTTE-EE
T ss_pred CCCEEEEECCCCCEEEEEECCC--CCEEE----EEEECCCCEEEE----EEEECCCCEEEEECC-CEEEEEECCCCC-EE
T ss_conf 6732575404783499997778--83687----876315660688----897179978999429-838999899993-99
Q ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCE
Q ss_conf 7644999998269998749999999997899199997889981023205788788893
Q 000836 1172 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1229 (1262)
Q Consensus 1172 ~ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V 1229 (1262)
..+..... +.++ +++++|..+++++.||.|++||.++.+ .+..++...++....
T Consensus 286 ~~~~~~~~--~~~v-a~s~DG~~l~v~~~d~~v~v~D~~t~~-~i~~i~~p~g~~~~~ 339 (346)
T d1jmxb_ 286 KAANLDHT--YYCV-AFDKKGDKLYLGGTFNDLAVFNPDTLE-KVKNIKLPGGDMSTT 339 (346)
T ss_dssp EEEECSSC--CCEE-EECSSSSCEEEESBSSEEEEEETTTTE-EEEEEECSSSCCBTC
T ss_pred EEECCCCC--EEEE-EECCCCCEEEEEECCCCEEEEECCCCC-EEEEEECCCCCCCEE
T ss_conf 99749997--7899-996899999999489929999996587-979998899985505
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.3e-08 Score=71.92 Aligned_cols=175 Identities=14% Similarity=0.194 Sum_probs=100.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEE---CCCCCCCCEEEEEEEECCCCCEEE-EEECCCEEE
Q ss_conf 8899828999937999999996-89939999889992888940---799999985899985418996899-993798299
Q 000836 1033 RFEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLL-VASCNGNIR 1107 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs-~dg~I~IWD~~tg~~l~~l~---~h~~~~~~ItsL~fsn~~dg~lLv-TgS~DG~Ir 1107 (1262)
.+...+.++.|+++++++++++ .+..|.+|+........... .....+.....+.|+ +++..+. +....+...
T Consensus 125 ~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~--~~~~~~~~~~~~~~~~~ 202 (333)
T d1ri6a_ 125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH--PNEQYAYCVNELNSSVD 202 (333)
T ss_dssp CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC--TTSSEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEE--CCCEEEEEECCCCCCEE
T ss_conf 7785314988630101310256554205689732687410010001334038875279996--02014786204667217
Q ss_pred EEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEC---CCCCCCEE
Q ss_conf 99867878852277400102478995001420488707999899996-898099996888851357644---99999826
Q 000836 1108 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIP---SSSDCSIS 1183 (1262)
Q Consensus 1108 IWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg-~Dg~IrIWDlrs~~~~i~ti~---~hs~s~It 1183 (1262)
+|+.......................... ...+.+++++..+++.+ .++.+.+|++.... ....+. ..... +.
T Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-p~ 279 (333)
T d1ri6a_ 203 VWELKDPHGNIECVQTLDMMPENFSDTRW-AADIHITPDGRHLYACDRTASLITVFSVSEDG-SVLSKEGFQPTETQ-PR 279 (333)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCC-EEEEEECTTSSEEEEEETTTTEEEEEEECTTS-CCEEEEEEEECSSS-CC
T ss_pred EEEECCCCCCEEEEEEEEEEECCCCCCCC-CEEEEEECCCCCEEEECCCCCEEEEEEECCCC-CEEEEEEEECCCCC-EE
T ss_conf 88510355520210022343068776553-12689951567205504568827878873999-78999999678997-62
Q ss_pred EEEEECCCCCEEEEEE-CCCCEEEEEC--CCCC
Q ss_conf 9998749999999997-8991999978--8998
Q 000836 1184 ALTASQVHGGQLAAGF-VDGSVRLYDV--RTPD 1213 (1262)
Q Consensus 1184 sLs~~s~~g~lLasGs-~DGsVrIWDl--rs~~ 1213 (1262)
++ .++++|+++++++ .++.|++|++ .++.
T Consensus 280 ~~-a~spDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 280 GF-NVDHSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp CE-EECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred EE-EEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 89-990798999999889993999999799996
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.07 E-value=3.2e-07 Score=65.56 Aligned_cols=186 Identities=11% Similarity=-0.013 Sum_probs=109.2
Q ss_pred CCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEEECCCCC-CC--CEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 982899993799999-99968993999988999288894079999-99--858999854189968999937982999986
Q 000836 1036 KGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFP-DK--GISKLCLVNELDVSLLLVASCNGNIRIWKD 1111 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~L-vsgs~dg~I~IWD~~tg~~l~~l~~h~~~-~~--~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~ 1111 (1262)
..+.++.|+++++.+ ++.+.++.+.+|+...+........+... +. ....+.+. .+ ..++..+.++.+.+|+.
T Consensus 165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~v~~~~~ 241 (373)
T d2madh_ 165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN--KS-GRIVWPVYSGKILQADI 241 (373)
T ss_pred CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEC--CC-CEEEEECCCCEEEEEEC
T ss_conf 4520699962899199999479939999747742667886300366753043458878--99-42999258965999976
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCC------CCEEEEECCCCC----------EEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 7878852277400102478995001------420488707999----------899996898099996888851357644
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRC------SNVVVDWQQQSG----------YLYASGEVSSIMLWDLEKEQQMVNPIP 1175 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~s------v~l~i~wsp~~~----------~Llssg~Dg~IrIWDlrs~~~~i~ti~ 1175 (1262)
.. ........+ ..+...... ....+.+++++. .++....++.+.+||..+++ .+..+.
T Consensus 242 ~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~-~~~~~~ 315 (373)
T d2madh_ 242 SA--AGATNKAPI---DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQIS 315 (373)
T ss_pred CC--CEEEEEEEE---CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC-EEEEEC
T ss_conf 89--907897763---056475786641367413357714997599954888247862589869999899996-989866
Q ss_pred CCCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECC
Q ss_conf 999998269998749999--99999789919999788998102320578878889399999429
Q 000836 1176 SSSDCSISALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1176 ~hs~s~ItsLs~~s~~g~--lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd 1237 (1262)
.... +.++ .++++|+ ++++++.|+.|++||+.+++ .+..+..+ ....+.+++...
T Consensus 316 ~~~~--~~~~-a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~~~~~---g~~P~~l~~~~~ 372 (373)
T d2madh_ 316 LGHD--VDAI-SVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQSTVEL---GSGPQVLSVMNE 372 (373)
T ss_pred CCCC--EEEE-EECCCCCEEEEEEECCCCEEEEEECCCCC-EEEEECCC---CCCCCEEEEECC
T ss_conf 8998--2589-99989998999996799929999999998-99998888---989818998468
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=1.3e-07 Score=68.38 Aligned_cols=198 Identities=9% Similarity=-0.002 Sum_probs=85.6
Q ss_pred EEEEEECCCCCEEEEEE--CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 28999937999999996--8993999988999288894079999998589998541899689999379829999867878
Q 000836 1038 TKTALLQPFSPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fspdg~~Lvsgs--~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~ 1115 (1262)
+..+.|++++.+++++. .+..+.+|+..+++.+..+..+. . .. .+. ......++.+.||....+.....
T Consensus 108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~--~~~~~~~~~~~dg~~~~v~~~~~- 178 (355)
T d2bbkh_ 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C-YH--IFP--TAPDTFFMHCRDGSLAKVAFGTE- 178 (355)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E-EE--EEE--EETTEEEEEETTSCEEEEECCSS-
T ss_pred CCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---C-CE--EEE--CCCCCEEEECCCCCEEEEEECCC-
T ss_conf 734999338871577327988204543057883766770587---4-04--730--69963699938999899983478-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EECCCCC---------CCEEE
Q ss_conf 852277400102478995001420488707999899996898099996888851357--6449999---------98269
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN--PIPSSSD---------CSISA 1184 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~--ti~~hs~---------s~Its 1184 (1262)
+.............+...+.. ..+.+.+..++.++.++.+.+|+...+. ... ....+.. .....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 253 (355)
T d2bbkh_ 179 GTPEITHTEVFHPEDEFLINH----PAYSQKAGRLVWPTYTGKIHQIDLSSGD-AKFLPAVEALTEAERADGWRPGGWQQ 253 (355)
T ss_dssp SCCEEEECCCCSCTTSCBCSC----CEEETTTTEEEEEBTTSEEEEEECTTSS-CEECCCEESSCHHHHHTTEEECSSSC
T ss_pred CEEEEEECCCCCCEECCEEEE----CCCCCCCCEEEEECCCCEEEEEECCCCC-EEEEECCCCCCCCEEEEEEECCCEEE
T ss_conf 737999624333000110610----2153899738874699829999658990-79984457844126854330351089
Q ss_pred EEEECCCCCEEEEEECC----------CCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCC--EEEEECC-CCE
Q ss_conf 99874999999999789----------9199997889981023205788788893999994299998--9999439-955
Q 000836 1185 LTASQVHGGQLAAGFVD----------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA--KVNGTPK-CLP 1251 (1262)
Q Consensus 1185 Ls~~s~~g~lLasGs~D----------GsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~--~LvSgSd-d~I 1251 (1262)
+ .+++++..++....+ ..|.+||..+++ .+..+ .. ...+.+++|+|+ ++ .+++++. +.+
T Consensus 254 ~-~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~-~~---~~~~~~~a~spD--G~~~l~v~~~~d~~i 325 (355)
T d2bbkh_ 254 V-AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKF-EM---GHEIDSINVSQD--EKPLLYALSTGDKTL 325 (355)
T ss_dssp E-EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEE-EE---EEEECEEEECCS--SSCEEEEEETTTTEE
T ss_pred E-EEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCC-EEEEE-CC---CCCEEEEEECCC--CCEEEEEEECCCCEE
T ss_conf 9-9807997678874068712651799759998678884-98996-68---998779999289--996999997899989
Q ss_pred EEEECC
Q ss_conf 998443
Q 000836 1252 SFSDLI 1257 (1262)
Q Consensus 1252 ~iWDLr 1257 (1262)
.+||+.
T Consensus 326 ~v~D~~ 331 (355)
T d2bbkh_ 326 YIHDAE 331 (355)
T ss_dssp EEEETT
T ss_pred EEEECC
T ss_conf 999999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.97 E-value=2e-06 Score=59.72 Aligned_cols=196 Identities=7% Similarity=-0.082 Sum_probs=115.0
Q ss_pred EEEEEECCCCCEEEEE--ECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCC-CEEEEEECCCEEEEEECCCC
Q ss_conf 2899993799999999--68993999988999288894079999998589998541899-68999937982999986787
Q 000836 1038 TKTALLQPFSPIVVAA--DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1038 V~sl~fspdg~~Lvsg--s~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg-~lLvTgS~DG~IrIWD~~~~ 1114 (1262)
+..+.|+++++.+++. ..++.+.+|+....+..... ....++.++ +++ ..+++.+.||.+.+|+...
T Consensus 127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s--~~g~~~~v~~~~dg~~~~~~~~~- 196 (373)
T d2madh_ 127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-------SSPTCYHIH--PGAPSTFYLLCAQGGLAKTDHAG- 196 (373)
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE-------CCCEEEEEE--CCCCCEEEEECCCCEEEEEECCC-
T ss_conf 97089985899379999869874677623687289982-------452069996--28991999994799399997477-
Q ss_pred CCCCEEEEEEEECC--CCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCC---------C
Q ss_conf 88522774001024--7899500142048870799989999689809999688885135764--499999---------8
Q 000836 1115 KDKQKLVTAFSSIQ--GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI--PSSSDC---------S 1181 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~--~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti--~~hs~s---------~ 1181 (1262)
+....... .... +....... ..+.. ++.++..+.++.+.+|+..... ..... ...... .
T Consensus 197 -~~~~~~~~-~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (373)
T d2madh_ 197 -GAAGAGLV-GAMLTAAQNLLTQP----AQANK-SGRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGG 268 (373)
T ss_pred -CEEEEEEE-EECCCCCCCCEEEE----EEECC-CCEEEEECCCCEEEEEECCCCE-EEEEEEECCCCCCEEEEEECCCC
T ss_conf -42667886-30036675304345----88789-9429992589659999768990-78977630564757866413674
Q ss_pred EEEE---------EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCE--EEEECCC-
Q ss_conf 2699---------987499999999978991999978899810232057887888939999942999989--9994399-
Q 000836 1182 ISAL---------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK--VNGTPKC- 1249 (1262)
Q Consensus 1182 ItsL---------s~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~--LvSgSdd- 1249 (1262)
...+ ......+..+++...++.+.+||..+++ .+..+ . +...+.+++|+|+ ++. +++++.+
T Consensus 269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~-~~~~~-~---~~~~~~~~a~spD--G~~~l~vt~~~d~ 341 (373)
T d2madh_ 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQI-S---LGHDVDAISVAQD--GGPDLYALSAGTE 341 (373)
T ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC-EEEEE-C---CCCCEEEEEECCC--CCEEEEEEECCCC
T ss_conf 13357714997599954888247862589869999899996-98986-6---8998258999989--9989999967999
Q ss_pred CEEEEECCC
Q ss_conf 559984431
Q 000836 1250 LPSFSDLIY 1258 (1262)
Q Consensus 1250 ~I~iWDLry 1258 (1262)
.+.+||+..
T Consensus 342 ~v~v~D~~t 350 (373)
T d2madh_ 342 VLHIYDAGA 350 (373)
T ss_pred EEEEEECCC
T ss_conf 299999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.90 E-value=8.6e-07 Score=62.39 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=103.2
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 28999937999999996-89939999889992888940799999985899985418996899993798299998678788
Q 000836 1038 TKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1116 (1262)
Q Consensus 1038 V~sl~fspdg~~Lvsgs-~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~g 1116 (1262)
...+.+++++..++... .++.+.+++...... .+. ..+....+. .++..++.++.+|.+.+|+... +
T Consensus 159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~--~ 226 (355)
T d2bbkh_ 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDE---FLINHPAYS--QKAGRLVWPTYTGKIHQIDLSS--G 226 (355)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTS---CBCSCCEEE--TTTTEEEEEBTTSEEEEEECTT--S
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEEECCCCCC-----EEC---CEEEECCCC--CCCCEEEEECCCCEEEEEECCC--C
T ss_conf 636999389998999834787379996243330-----001---106102153--8997388746998299996589--9
Q ss_pred CCEEEEEEEECCCCCCCCCCC------CEEEEECCCCCEEEEEECC----------CEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 522774001024789950014------2048870799989999689----------809999688885135764499999
Q 000836 1117 KQKLVTAFSSIQGHKPGVRCS------NVVVDWQQQSGYLYASGEV----------SSIMLWDLEKEQQMVNPIPSSSDC 1180 (1262)
Q Consensus 1117 ~~~lvsa~~~l~~h~~~V~sv------~l~i~wsp~~~~Llssg~D----------g~IrIWDlrs~~~~i~ti~~hs~s 1180 (1262)
....+ .....+....... ...+.+++++..+++...+ ..|.+||..+.+ .+..+..+..
T Consensus 227 ~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-~~~~~~~~~~- 301 (355)
T d2bbkh_ 227 DAKFL---PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMGHE- 301 (355)
T ss_dssp SCEEC---CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEEE-
T ss_pred CEEEE---ECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCC-EEEEECCCCC-
T ss_conf 07998---445784412685433035108999807997678874068712651799759998678884-9899668998-
Q ss_pred CEEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEECCC
Q ss_conf 8269998749999--99999789919999788998102320578
Q 000836 1181 SISALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1222 (1262)
Q Consensus 1181 ~ItsLs~~s~~g~--lLasGs~DGsVrIWDlrs~~~~v~~~~~~ 1222 (1262)
+.++ .++++|+ +++++..|+.|++||..+++ .++.+...
T Consensus 302 -~~~~-a~spDG~~~l~v~~~~d~~i~v~D~~tg~-~~~~i~~~ 342 (355)
T d2bbkh_ 302 -IDSI-NVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQL 342 (355)
T ss_dssp -ECEE-EECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCC
T ss_pred -EEEE-EECCCCCEEEEEEECCCCEEEEEECCCCC-EEEEEECC
T ss_conf -7799-99289996999997899989999999998-99999286
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.1e-06 Score=61.71 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=46.3
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 46999999521799999999677899999999862027615568641138247774320599978999999999520145
Q 000836 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~ 666 (1262)
.++..+...++ +++|.+|..++-+++.+....... .+.......+..++.|+...||.+++-+|+.++..
T Consensus 402 ~ll~~l~~~~~-------d~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~ 471 (588)
T d1b3ua_ 402 SLLPAIVELAE-------DAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77899999984-------335889999999999999771847---67788888877635687416899999999999998
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7666788988998777599999999999999852068994359999999999997
Q 000836 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1262)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~ 721 (1262)
. ... .....+...+..+..|.+..+|..++.+++.+..
T Consensus 472 ~--------------~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~ 509 (588)
T d1b3ua_ 472 F--------------GKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp H--------------CHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred H--------------CCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 3--------------938---7899999999998659987899999999999999
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.1e-06 Score=57.47 Aligned_cols=262 Identities=16% Similarity=0.068 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHCC----CHHHHHHHHHHHHHHCCCHHHHH-HHHHCCCHHHHHHHCCC
Q ss_conf 89998999850399998---999540156777306----02477899999987328987899-97753873535662289
Q 000836 441 EQLTAFEVWLDHGSEHK---KPPEQLPIVLQVLLS----QCHRFRALVLLGRFLDMGPWAVD-LALSVGIFPYVLKLLQT 512 (1262)
Q Consensus 441 ~qLtafe~wL~~g~~~~---~pp~~lPiVLqvLlS----q~hrlral~ll~~Fld~g~wAv~-lals~gifpyvlkLLqs 512 (1262)
-.+.++..+........ ....+++++++.|.+ ...|..|+..++.++...+--.. ......+++.+..++++
T Consensus 148 ~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 227 (458)
T d1ibrb_ 148 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227 (458)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89988889876314100023388999999998615456799999999999999886132456677777767668877259
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH--------------
Q ss_conf 906677799999999830591334464303337778875038898178999999999999519901--------------
Q 000836 513 TTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR-------------- 578 (1262)
Q Consensus 513 ~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~-------------- 578 (1262)
+..++|..+.-++..|+..++.-=...+.+....++...+.+.+ ++.+.-++-.+..+++....
T Consensus 228 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~ 305 (458)
T d1ibrb_ 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 305 (458)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999871999998887789999999843545--9999999999999899889999850367876418
Q ss_pred ------HHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHH
Q ss_conf ------45999864469999995217999999996778999999998620276155686411382477743205999789
Q 000836 579 ------GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEV 652 (1262)
Q Consensus 579 ------gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeV 652 (1262)
......-..+...+...+.+....+.+....+|.++..+++.+.....+.. + ..+...+...++|+.+.|
T Consensus 306 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~ 381 (458)
T d1ibrb_ 306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRY 381 (458)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHCCCCHHH
T ss_conf 999999999988998726677640001021011223399999999999987551755---6-678999999856999899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999952014576667889889987775999999999999998520689943599999999999972
Q 000836 653 RASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1262)
Q Consensus 653 Raa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~ 722 (1262)
|.+++++|+.+...... ...... -..+...++....|.++.||..++++++++...
T Consensus 382 r~aal~~l~~i~~~~~~---------~~~~~~-----l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 382 RDAAVMAFGCILEGPEP---------SQLKPL-----VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHHTSSSSCT---------TTTCTT-----TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCH---------HHHHHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999975477---------678988-----999999999884899899999999999999997
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.2e-06 Score=61.45 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCCCHHHHHHCCCHHH--HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 5401567773060247--78999999873289878999775387353566228990667779999999983059133446
Q 000836 461 EQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1262)
Q Consensus 461 ~~lPiVLqvLlSq~hr--lral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~d 538 (1262)
..+|++.+++..+..+ ..|+..|..+++.-+-... .--++|.+.++++++..+.|..++-++++++..... +
T Consensus 203 ~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~ 276 (588)
T d1b3ua_ 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL---EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---E 276 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH---HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---H
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 9999999974488524678999888776305888999---999999999720235688889999857888877665---3
Q ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43033377788750388981789999999999995199014-59998644699999952179999999967789999999
Q 000836 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG-QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1262)
Q Consensus 539 l~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~g-q~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~ 617 (1262)
.........+...+.+++ ++.|.-++..|+.++...... .....-..++..+...+. |+++.+|+.++.+
T Consensus 277 ~~~~~l~~~l~~ll~d~~--~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~-------d~~~~vr~~~~~~ 347 (588)
T d1b3ua_ 277 ITKTDLVPAFQNLMKDCE--AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-------DANQHVKSALASV 347 (588)
T ss_dssp HHHHTHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_conf 434441689999872133--5777999987999999876655433219999888887613-------8876789999998
Q ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 98620276155686411382477743205999789999999995201
Q 000836 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i 664 (1262)
++.+........ .. ......+..+++|..++||..++.+++.+.
T Consensus 348 l~~~~~~~~~~~--~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~ 391 (588)
T d1b3ua_ 348 IMGLSPILGKDN--TI-EHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp GGGGHHHHCHHH--HH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 865543013167--88-888888999987510222267788888887
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.56 E-value=5.1e-06 Score=56.77 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=54.2
Q ss_pred EECCCCC--EEEEEECCCEEEE--EECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCC----CEEEEE--CCC
Q ss_conf 8707999--8999968980999--96888851357644999998269998749999999997899----199997--889
Q 000836 1142 DWQQQSG--YLYASGEVSSIML--WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG----SVRLYD--VRT 1211 (1262)
Q Consensus 1142 ~wsp~~~--~Llssg~Dg~IrI--WDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lLasGs~DG----sVrIWD--lrs 1211 (1262)
.|..+++ .++.+..++...+ |+..... ...+..+.. .|..+..++ ...+++++..++ .-.+|. +..
T Consensus 325 ~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~--~~~lt~g~~-~v~~~~~~d-~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 325 HFTLDGNSFYKIISNEEGYRHICYFQIDKKD--CTFITKGTW-EVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEETTCSC--CEESCCSSS-CEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCC--EEEECCCCE-EEEEEEEEC-CCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 4542378847987436757645999526873--045116980-487878977-999999995689983517999998889
Q ss_pred CCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEE-C--CC-CEEEEEC
Q ss_conf 98102320578878889399999429999899994-3--99-5599844
Q 000836 1212 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGT-P--KC-LPSFSDL 1256 (1262)
Q Consensus 1212 ~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSg-S--dd-~I~iWDL 1256 (1262)
.....+.-....+|...+.+++|+|+ |++++.. + +. .+.+|+.
T Consensus 401 ~~~~~~lt~~~~~~~~~~~s~~fSpd--gky~~~~~s~~~~P~~~l~~~ 447 (470)
T d2bgra1 401 YTKVTCLSCELNPERCQYYSVSFSKE--AKYYQLRCSGPGLPLYTLHSS 447 (470)
T ss_dssp TTCEEESSTTTSTTTBCBEEEEECTT--SSEEEEEECSBSSCEEEEEET
T ss_pred CCCEEEECCCCCCCCCCEEEEEECCC--CCEEEEEECCCCCCEEEEEEC
T ss_conf 98605703543588898799999989--999999832899981999998
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.7e-05 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.072 Sum_probs=103.2
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 73535662289906677799999999830591334464303337778875038898178999999999999519901459
Q 000836 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581 (1262)
Q Consensus 502 ifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~ 581 (1262)
-.|-++++|+++.++++..++-.+..+|..+...|..+.+.+|++.+++.|.+++ ++.|.-|+.+|..++.+++..|.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7899999857999999999999999998499999999998885999999877999--89999999999999749988899
Q ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHH---------------HHHHC
Q ss_conf 998644699999952179999999967789999999986202761556864113824777---------------43205
Q 000836 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIY---------------VPLLS 646 (1262)
Q Consensus 582 ~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l---------------~~ll~ 646 (1262)
...+.|.+..++..+.. +.++.+|..++-+|..+......... ....+....+ .....
T Consensus 81 ~i~~~g~v~~li~~l~~------~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRR------TGNAEIQKQLTGLLWNLSSTDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHTTCHHHHHHHHTT------CCCHHHHHHHHHHHHHHHTSSSTHHH-HHHHHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 99987982899999843------37388999999999999864135788-886010788999875322110000355302
Q ss_pred CCCHHHHHHHHHHHHHCC
Q ss_conf 999789999999995201
Q 000836 647 EPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 647 D~sPeVRaa~v~aL~~~i 664 (1262)
...++|+..++.+|..+.
T Consensus 154 ~~~~~v~~~a~~~l~~~~ 171 (457)
T d1xm9a1 154 VVDPEVFFNATGCLRNLS 171 (457)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 144999999999999873
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.54 E-value=2.6e-06 Score=58.83 Aligned_cols=168 Identities=10% Similarity=-0.109 Sum_probs=80.0
Q ss_pred CEEEEEECCCCCEEEEEE-CCC-----CEEEEECCCCCEEEEEEC-----CCC---CCCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 828999937999999996-899-----399998899928889407-----999---999858999854189968999937
Q 000836 1037 GTKTALLQPFSPIVVAAD-ENE-----RIKIWNYEEDTLLNSFDN-----HDF---PDKGISKLCLVNELDVSLLLVASC 1102 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lvsgs-~dg-----~I~IWD~~tg~~l~~l~~-----h~~---~~~~ItsL~fsn~~dg~lLvTgS~ 1102 (1262)
.+..+.|.+++..++... ..+ .+..+|..++........ ... ....-....|....++..+.....
T Consensus 261 ~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~ 340 (470)
T d2bgra1 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (470)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECC
T ss_conf 67788876878334787304688159999996188894789998751466214335313577724542378847987436
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEE-EEEEC-CC---E--EEEEECCCCCEEEEEE-
Q ss_conf 982999986787885227740010247899500142048870799989-99968-98---0--9999688885135764-
Q 000836 1103 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL-YASGE-VS---S--IMLWDLEKEQQMVNPI- 1174 (1262)
Q Consensus 1103 DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~L-lssg~-Dg---~--IrIWDlrs~~~~i~ti- 1174 (1262)
||..++|......+.. +.+......+..+ ..+ +++.+ +++.. +. . |.-.++.... ....+
T Consensus 341 dg~~~ly~~~~~g~~~------~~lt~g~~~v~~~---~~~--d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~-~~~~lt 408 (470)
T d2bgra1 341 EGYRHICYFQIDKKDC------TFITKGTWEVIGI---EAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYT-KVTCLS 408 (470)
T ss_dssp TSCEEEEEEETTCSCC------EESCCSSSCEEEE---EEE--CSSEEEEEESCGGGCTTCBEEEEEETTCTT-CEEESS
T ss_pred CCCCEEEEEECCCCCE------EEECCCCEEEEEE---EEE--CCCEEEEEEECCCCCCCEEEEEEEECCCCC-CEEEEC
T ss_conf 7576459995268730------4511698048787---897--799999999568998351799999888998-605703
Q ss_pred ---CCCCCCCEEEEEEECCCCCEEEEE---ECCCCEEEEECCCCCCEEEEE
Q ss_conf ---499999826999874999999999---789919999788998102320
Q 000836 1175 ---PSSSDCSISALTASQVHGGQLAAG---FVDGSVRLYDVRTPDMLVCST 1219 (1262)
Q Consensus 1175 ---~~hs~s~ItsLs~~s~~g~lLasG---s~DGsVrIWDlrs~~~~v~~~ 1219 (1262)
..|... +.++ .++|+|.+++.. ...-.+++|+..+++ .++.+
T Consensus 409 ~~~~~~~~~-~~s~-~fSpdgky~~~~~s~~~~P~~~l~~~~~g~-~v~~l 456 (470)
T d2bgra1 409 CELNPERCQ-YYSV-SFSKEAKYYQLRCSGPGLPLYTLHSSVNDK-GLRVL 456 (470)
T ss_dssp TTTSTTTBC-BEEE-EECTTSSEEEEEECSBSSCEEEEEETTTTE-EEEEE
T ss_pred CCCCCCCCC-EEEE-EECCCCCEEEEEECCCCCCEEEEEECCCCC-EEEEE
T ss_conf 543588898-7999-999899999998328999819999989998-99998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.51 E-value=4.7e-06 Score=57.00 Aligned_cols=197 Identities=6% Similarity=-0.098 Sum_probs=109.0
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 9828999937999999996-899399998899928889407999999858999854189968999937982999986787
Q 000836 1036 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs-~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~ 1114 (1262)
..+..+.|+|++++++++. .++.+.+||..+++.+..+..+. ... +.. .....++..+.||.+.+|+....
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~---~~~--~~~---~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS---CFH--IHP---GAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS---CCC--CEE---EETTEEECCCCTTSCEEEECCSS
T ss_pred CCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC---CCE--ECC---CCCCEEEEECCCCCEEEEEECCC
T ss_conf 8864058878998999996899859999899893867860467---523--746---99823999948998899982689
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCC----------CCCE
Q ss_conf 8852277400102478995001420488707999899996898099996888851357644--999----------9982
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP--SSS----------DCSI 1182 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~--~hs----------~s~I 1182 (1262)
+.............+...... ..+.+++..+. ...+.+.+++...+. ...... ... .. .
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~--~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g-~ 266 (368)
T d1mdah_ 196 -PAAAGIVGAQCTGAQNCSSQA----AQANYPGMLVW--AVASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAG-F 266 (368)
T ss_dssp -CCCCEECCCCSCTTSCBCSCC----EEETTTTEEEE--CBSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECS-S
T ss_pred -CEEEEEEECCCCCCCCCCEEE----CCCCCCCEEEE--ECCCCEEEEEECCCC-EEEEEECCCCCCEEEEEEECCCC-C
T ss_conf -626665303111356664660----10155868999--348977999606993-69976024654304554012788-3
Q ss_pred EEEEEECCCCCEEEEEECC---------CCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCC-E-EEEECC-CC
Q ss_conf 6999874999999999789---------9199997889981023205788788893999994299998-9-999439-95
Q 000836 1183 SALTASQVHGGQLAAGFVD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA-K-VNGTPK-CL 1250 (1262)
Q Consensus 1183 tsLs~~s~~g~lLasGs~D---------GsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~-~-LvSgSd-d~ 1250 (1262)
..+ .+++++..++....+ ..|.+||..+++ .+..+ . +...+.+++|+|+ ++ . ++++.. +.
T Consensus 267 ~~~-a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~-~---~~~~~~~~a~spD--G~~~ly~s~~~~~~ 338 (368)
T d1mdah_ 267 QMV-AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPI-S---NGHDSDAIIAAQD--GASDNYANSAGTEV 338 (368)
T ss_dssp SCE-EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECC-E---EEEEECEEEECCS--SSCEEEEEETTTTE
T ss_pred EEE-EECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCC-EEEEE-C---CCCCEEEEEECCC--CCEEEEEEECCCCE
T ss_conf 568-871799879998358973340588649999899994-86895-5---8996517999989--99899999489996
Q ss_pred EEEEECC
Q ss_conf 5998443
Q 000836 1251 PSFSDLI 1257 (1262)
Q Consensus 1251 I~iWDLr 1257 (1262)
+.+||..
T Consensus 339 v~v~D~~ 345 (368)
T d1mdah_ 339 LDIYDAA 345 (368)
T ss_dssp EEEEESS
T ss_pred EEEEECC
T ss_conf 9999899
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.43 E-value=7.1e-05 Score=48.36 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=12.9
Q ss_pred EEECCCCCEEEEE-ECCCEEEEEECCC
Q ss_conf 8870799989999-6898099996888
Q 000836 1141 VDWQQQSGYLYAS-GEVSSIMLWDLEK 1166 (1262)
Q Consensus 1141 i~wsp~~~~Llss-g~Dg~IrIWDlrs 1166 (1262)
+..+|++.+++++ ..+++|.+||+.+
T Consensus 263 v~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 263 LNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp EEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CEECCCCCEEEEECCCCCCEEEEEEEH
T ss_conf 268999878999077599389998322
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.2e-05 Score=53.94 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=61.7
Q ss_pred CCHHHHHHCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 0156777306024--77899999987328987899977538735356622899066777999999998305913344643
Q 000836 463 LPIVLQVLLSQCH--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1262)
Q Consensus 463 lPiVLqvLlSq~h--rlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~ 540 (1262)
.|.++++|.|... +..|...|++..-..+-.+......|+.|-++++|.++..+.|..++.++.++...++..|..+.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 89999985799999999999999999849999999999888599999987799989999999999999749988899999
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 03337778875038898178999999999999519901
Q 000836 541 KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1262)
Q Consensus 541 k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~ 578 (1262)
+.++...+++.+...+. ++.|..++.+|+.++.+...
T Consensus 84 ~~g~v~~li~~l~~~~~-~~~~~~a~~~l~~l~~~~~~ 120 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDEL 120 (457)
T ss_dssp HTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSST
T ss_pred HCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 87982899999843373-88999999999999864135
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.36 E-value=5.4e-05 Score=49.24 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=92.0
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEE------ECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCEEE
Q ss_conf 99999968993999988999288894------079999998589998541899689999379829999867878852277
Q 000836 1048 PIVVAADENERIKIWNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1121 (1262)
Q Consensus 1048 ~~Lvsgs~dg~I~IWD~~tg~~l~~l------~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~g~~~lv 1121 (1262)
..++..+.||.+.+|+.......... ..+. ..+....+. .++..+.+ .++.+.+++... +.....
T Consensus 176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~g~~~~~--~~~~v~~~~~~~--~~~~~~ 246 (368)
T d1mdah_ 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN---CSSQAAQAN--YPGMLVWA--VASSILQGDIPA--AGATMK 246 (368)
T ss_dssp TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC---BCSCCEEET--TTTEEEEC--BSSCCEEEECCS--SCCEEE
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCC---CCEEECCCC--CCCEEEEE--CCCCEEEEEECC--CCEEEE
T ss_conf 239999489988999826896266653031113566---646601015--58689993--489779996069--936997
Q ss_pred EEEEECCCCCC----------CCCCCCEEEEECCCCCEEEEEECC---------CEEEEEECCCCCEEEEEECCCCCCCE
Q ss_conf 40010247899----------500142048870799989999689---------80999968888513576449999982
Q 000836 1122 TAFSSIQGHKP----------GVRCSNVVVDWQQQSGYLYASGEV---------SSIMLWDLEKEQQMVNPIPSSSDCSI 1182 (1262)
Q Consensus 1122 sa~~~l~~h~~----------~V~sv~l~i~wsp~~~~Llssg~D---------g~IrIWDlrs~~~~i~ti~~hs~s~I 1182 (1262)
........ .... +.++++++.+++...+ ..|.+||..+++ .+..+..+.. +
T Consensus 247 ---~~~~~~~~~~~~~~~~~~g~~~----~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~~~~~~--~ 316 (368)
T d1mdah_ 247 ---AAIDGNESGRKADNFRSAGFQM----VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISNGHD--S 316 (368)
T ss_dssp ---CCCCSSCTHHHHTTEEECSSSC----EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEEEEE--E
T ss_pred ---EECCCCCCEEEEEEECCCCCEE----EEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCC-EEEEECCCCC--E
T ss_conf ---6024654304554012788356----8871799879998358973340588649999899994-8689558996--5
Q ss_pred EEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 69998749999--999997899199997889981023205788788893999994
Q 000836 1183 SALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1235 (1262)
Q Consensus 1183 tsLs~~s~~g~--lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafs 1235 (1262)
.++ .++++|+ +++++..|+.|++||..+++ .+..+..- ..-..|.+.
T Consensus 317 ~~~-a~spDG~~~ly~s~~~~~~v~v~D~~tgk-~~~~i~~g----~~P~~l~~~ 365 (368)
T d1mdah_ 317 DAI-IAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELD----KGPESLSVQ 365 (368)
T ss_dssp CEE-EECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCC----SCCCEEECC
T ss_pred EEE-EECCCCCEEEEEEECCCCEEEEEECCCCC-EEEEEECC----CCCCEEEEE
T ss_conf 179-99989998999994899969999899997-99998799----998789973
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.24 E-value=0.00018 Score=45.36 Aligned_cols=145 Identities=9% Similarity=0.001 Sum_probs=78.6
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEE-EEEECCCEEEEEECCCCC----C
Q ss_conf 99379999999968993999988999288894079999998589998541899689-999379829999867878----8
Q 000836 1042 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQK----D 1116 (1262)
Q Consensus 1042 ~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lL-vTgS~DG~IrIWD~~~~~----g 1116 (1262)
.+.++++++.+++ ++.+.|++......+..+..+. ....+.++ +|++++ +++..+++|.+||....+ +
T Consensus 224 ~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgk----sPhGv~vS--PDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 224 AAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPK----NPHGLNTS--PDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp HHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBS----SCCCEEEC--TTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred EEECCCCEEEECC-CCCEEEECCCCCCEEEEEECCC----CCCCCEEC--CCCCEEEEECCCCCCEEEEEEEHHHHHHHC
T ss_conf 9966999999699-9828998036870689971798----86672689--998789990775993899983224457525
Q ss_pred CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCC---------CEEEEEECCCC-----CCC
Q ss_conf 5227740010247899500142048870799989999-68980999968888---------51357644999-----998
Q 000836 1117 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKE---------QQMVNPIPSSS-----DCS 1181 (1262)
Q Consensus 1117 ~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llss-g~Dg~IrIWDlrs~---------~~~i~ti~~hs-----~s~ 1181 (1262)
+.... ..+..+..... ..+...|.+++ ..+++ ..|..|..|++... ...+..+..|. ..
T Consensus 297 ~~~~~---~~~~~~~~~gl-gplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~- 370 (441)
T d1qnia2 297 KIELR---DTIVAEPELGL-GPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA- 370 (441)
T ss_dssp SSCGG---GGEEECCBCCS-CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE-
T ss_pred CCCCC---EEEEEECCCCC-CCCCCEECCCC-EEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCC-
T ss_conf 68842---47996014554-76652265785-59985244316897235422133226777656864532668987752-
Q ss_pred EEEEEEECCCCCEEEEEEC
Q ss_conf 2699987499999999978
Q 000836 1182 ISALTASQVHGGQLAAGFV 1200 (1262)
Q Consensus 1182 ItsLs~~s~~g~lLasGs~ 1200 (1262)
+.+. .++++|++|++++.
T Consensus 371 ~~~~-t~~pdGk~l~s~~k 388 (441)
T d1qnia2 371 SLTE-SRDADGKWLVVLSK 388 (441)
T ss_dssp TTTT-STTCCCCEEEEEES
T ss_pred CCCC-CCCCCCCEEEECCC
T ss_conf 4542-23898848996574
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.3e-05 Score=49.31 Aligned_cols=200 Identities=12% Similarity=0.012 Sum_probs=86.8
Q ss_pred CCCCCCHHHHHHCCC----HHHHHHHHHHHHHHCCCHHHHHHH-----------HHCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 995401567773060----247789999998732898789997-----------75387353566228990667779999
Q 000836 459 PPEQLPIVLQVLLSQ----CHRFRALVLLGRFLDMGPWAVDLA-----------LSVGIFPYVLKLLQTTTPELRQILVF 523 (1262)
Q Consensus 459 pp~~lPiVLqvLlSq----~hrlral~ll~~Fld~g~wAv~la-----------ls~gifpyvlkLLqs~a~elr~~lvF 523 (1262)
||+-+++.+++|.+. .-|.-|.++|.|++....-..... ....+...+++.+.++....+.. +-
T Consensus 32 ~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~ 110 (458)
T d1ibrb_ 32 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSA-SQ 110 (458)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
T ss_conf 35899999999844899989999999999988632671111677641114999999999999986147982899999-99
Q ss_pred HHHHHHCCC-HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCC
Q ss_conf 999983059-1334464303337778875038898178999999999999519901459998644699999952179999
Q 000836 524 IWTKILALD-KSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPN 602 (1262)
Q Consensus 524 Iwa~il~~d-~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~ 602 (1262)
+++.++..+ +.. . -+......+..+.+.......+.-+..+|+.++.........-....++..+...+...
T Consensus 111 ~~~~i~~~~~~~~---~-~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--- 183 (458)
T d1ibrb_ 111 CVAGIACAEIPVN---Q-WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--- 183 (458)
T ss_dssp HHHHHHHHHGGGT---C-CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT---
T ss_pred HHHHHHHHHCCCC---C-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 9999999867801---2-75105789999882032177888899888898763141000233889999999986154---
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99996778999999998620276155686-4113824777432059997899999999952014576
Q 000836 603 DAQTEPLFLQWLCLCLGKLWEDFTEAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGF 668 (1262)
Q Consensus 603 ~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~-~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~~~ 668 (1262)
++++.+|..++-+++.+.......... .........+..++.++.++||..++-+|+.++....
T Consensus 184 --~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 248 (458)
T d1ibrb_ 184 --EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248 (458)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --56799999999999999886132456677777767668877259989999999999999998719
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.7e-05 Score=48.57 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 78875038898178999999999999519901459998644699999952179999999967789999999986202761
Q 000836 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1262)
Q Consensus 547 yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~ 626 (1262)
++...+.+++ ...|.-+++.++.+..+....+..-.-..++..+...+. |++|.||..++.++|++.+...
T Consensus 370 ~i~~~l~~~~--~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T d1qgra_ 370 FIKEHIKNPD--WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------DPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998602513--788899999887666432298898999999999998615-------7860899999988999999813
Q ss_pred HHHHH-HHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 55686-4113824777432059997899999999952014
Q 000836 627 EAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1262)
Q Consensus 627 ~~~~~-~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~ 665 (1262)
..... ..-......+...+ +..|.|+..+++++.+++.
T Consensus 441 ~~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 441 EAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_conf 11101777666799999882-6987999999987889999
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=0.00051 Score=42.14 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 158899999999995
Q 000836 339 GELNWIFTAVTDTIA 353 (1262)
Q Consensus 339 ~el~~i~~ai~d~iA 353 (1262)
.+++-+++++...+.
T Consensus 175 ~~~~~il~~i~~~~~ 189 (861)
T d2bpta1 175 SSSNNILIAIVQGAQ 189 (861)
T ss_dssp GGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 889999999999873
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00055 Score=41.87 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 996778999999998620
Q 000836 605 QTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 605 ~~~P~lR~w~~l~Lg~l~ 622 (1262)
|++|.||..+|.+|+.|.
T Consensus 489 d~~~~V~~~a~~al~~l~ 506 (888)
T d1qbkb_ 489 DSNKRVQEAACSAFATLE 506 (888)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 898789998999999999
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=0.00052 Score=42.03 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=48.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 56622899066777999999998305913344643033377788750388981789999999999995199014599986
Q 000836 506 VLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIE 585 (1262)
Q Consensus 506 vlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~ 585 (1262)
++++|+++.+++|..++.++..+-. +.....++..|.+++ ++.|..|+..|+.+...... .
T Consensus 24 L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~--~~vr~~a~~aL~~l~~~~~~------~ 84 (276)
T d1oyza_ 24 LFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN--YIRRDIGAFILGQIKICKKC------E 84 (276)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS--HHHHHHHHHHHHHSCCCTTT------H
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCC------C
T ss_conf 9988469999999999999986188-----------739999999980999--89999999999872022121------2
Q ss_pred HCHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 4469999995-21799999999677899999999862027615568641138247774320599978999999999520
Q 000836 586 AGLIHVCLKH-LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 586 ~~~~~~~~~~-L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~ 663 (1262)
......+... ++ ++++.+|..++.+|++++....... ..+...+...+.|..+.||.+++.+++..
T Consensus 85 ~~~~~~l~~~~l~-------d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~ 151 (276)
T d1oyza_ 85 DNVFNILNNMALN-------DKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI 151 (276)
T ss_dssp HHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 0229999999866-------9976689999999998702462101-----89999999986472048999999987410
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.00049 Score=42.24 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=69.4
Q ss_pred HHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 677730602--477899999987328987899977538735356622899066777999999998305913344643033
Q 000836 466 VLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDG 543 (1262)
Q Consensus 466 VLqvLlSq~--hrlral~ll~~Fld~g~wAv~lals~gifpyvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~ 543 (1262)
++++|.++. .|..|+..|+++=+ + ...|.++++|+++..+.|..++..++++-...+... .
T Consensus 24 L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~------~ 86 (276)
T d1oyza_ 24 LFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------N 86 (276)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------H
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC------C
T ss_conf 9988469999999999999986188--7---------399999999809998999999999987202212120------2
Q ss_pred CHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 377788-7503889817899999999999951990145999864469999995217999999996778999999998620
Q 000836 544 GHAYFI-RFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 544 ~~~yf~-~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~ 622 (1262)
.....+ ..+.+++ ++.|..++..|+.++.+... ....++..+...+. |+.+.+|..++.+++..-
T Consensus 87 ~~~~l~~~~l~d~~--~~vr~~a~~aL~~~~~~~~~-----~~~~~~~~l~~~~~-------d~~~~vr~~a~~~l~~~~ 152 (276)
T d1oyza_ 87 VFNILNNMALNDKS--ACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAF-------DKSTNVRRATAFAISVIN 152 (276)
T ss_dssp HHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTT-------CSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCC
T ss_conf 29999999866997--66899999999987024621-----01899999999864-------720489999999874102
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 27615568641138247774320599978999999999520
Q 000836 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~ 663 (1262)
.. .....+..++.+..+.||..+..+++..
T Consensus 153 ~~-----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 182 (276)
T d1oyza_ 153 DK-----------ATIPLLINLLKDPNGDVRNWAAFAININ 182 (276)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 38-----------8999988740466401113577787765
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00029 Score=43.92 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCC
Q ss_conf 99677899999999862027615568641138247774320599978999999999520145766678898---899877
Q 000836 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGV---EGDEEC 681 (1262)
Q Consensus 605 ~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~~~~~~~~~~---~~~~~~ 681 (1262)
+..+.+|.+++.+||.+....+.. ........+...++|++++||.+|.++||.+.....+.+.+.. ......
T Consensus 826 ~~~~~~~~~al~~Lge~~~~~~~~----~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~ 901 (1207)
T d1u6gc_ 826 RSTDSIRLLALLSLGEVGHHIDLS----GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 901 (1207)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCCC----SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 225999999999999999852531----1599999999980899889999999999999976288875999998724735
Q ss_pred CHHHH--H--------------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75999--9--------------9999999999852068994359999999999997223568988
Q 000836 682 DDDEK--I--------------RAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSI 730 (1262)
Q Consensus 682 ~~~~~--~--------------~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls~~~~~~~~~f~~~ 730 (1262)
..... + ..-..++..|+..+.+....||..++-.+.++...+...++-.
T Consensus 902 ~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~ 966 (1207)
T d1u6gc_ 902 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR 966 (1207)
T ss_dssp GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 89999999999998545554687899999999988179718799999999998870278999999
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0011 Score=39.53 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH
Q ss_conf 99999999999951990145999864469999995217999999996778999999998620276155686411382477
Q 000836 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAI 640 (1262)
Q Consensus 561 ~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~ 640 (1262)
.|.-+..+|..++..++.. +-..++..+...+. ++.+..|..++.++|.+..+.........-......
T Consensus 344 ~~~~a~~~l~~l~~~~~~~----~~~~~~~~i~~~l~-------~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 412 (876)
T d1qgra_ 344 PCKAAGVCLMLLATCCEDD----IVPHVLPFIKEHIK-------NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGG----GHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999873666----53556789998602-------513788899999887666432298898999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74320599978999999999520145
Q 000836 641 YVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 641 l~~ll~D~sPeVRaa~v~aL~~~i~~ 666 (1262)
+...+.|++|.||.+++++++.+...
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 413 LIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99861578608999999889999998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.77 E-value=0.0012 Score=39.36 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=113.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-EEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 899828999937999999996899399998899928-8894079999998589998541899689999379829999867
Q 000836 1034 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1112 (1262)
Q Consensus 1034 ~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~-l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~ 1112 (1262)
....+.+++|.+++.++++...++.+.+|+...... ...+... +.+.....+.+. +++.++++.+.++.+..++..
T Consensus 66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~i~~~--~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEES--SSSEEEEEETTTTEEEEEETT
T ss_pred CCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCC-CCCCCCCEEEEC--CCCCEEEECCCCCCCEEEECC
T ss_conf 79985368986778869983289537888710111101210235-786322166771--579787503565541024216
Q ss_pred CCCCCCEEEEEE--EE-CCCCC--CCCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEE--CCCCCCCEEE
Q ss_conf 878852277400--10-24789--9500142048870799989999-689809999688885135764--4999998269
Q 000836 1113 DQKDKQKLVTAF--SS-IQGHK--PGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPI--PSSSDCSISA 1184 (1262)
Q Consensus 1113 ~~~g~~~lvsa~--~~-l~~h~--~~V~sv~l~i~wsp~~~~Llss-g~Dg~IrIWDlrs~~~~i~ti--~~hs~s~Its 1184 (1262)
. +...+...- .. ..... ..... +.+. ++.++.+ ...+.|..++..... ..... ...... ...
T Consensus 143 ~--~~~~~~~~~~~~~~~~~~~~~~~~ng----i~~~--~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~-pdg 212 (302)
T d2p4oa1 143 Q--PSGSIWLEHPMLARSNSESVFPAANG----LKRF--GNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFVEQTN-IDD 212 (302)
T ss_dssp T--TEEEEEEECGGGSCSSTTCCSCSEEE----EEEE--TTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEEESCC-CSS
T ss_pred C--CCCEEEECCCCCCEEECCCCCCCCCC----CCCC--CCCEEEECCCCCEEEECCCCCCC-CCCCCCCCCCCCC-CCC
T ss_conf 8--73036751886401431576322432----0116--98304403788769863443333-2345310158998-752
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEE---ECCCCCCEEEEE
Q ss_conf 99874999999999789919999788998102320578878889399999---429999899994
Q 000836 1185 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF---QPGLDPAKVNGT 1246 (1262)
Q Consensus 1185 Ls~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIaf---spd~~g~~LvSg 1246 (1262)
+ ++..+|+++++...++.|..++..... .... .........++++| .++ ++.|..+
T Consensus 213 i-a~d~dG~l~va~~~~~~V~~i~p~G~~--~~~~-~~~~~~~~pt~vafg~~~~D--~~~Lyvt 271 (302)
T d2p4oa1 213 F-AFDVEGNLYGATHIYNSVVRIAPDRST--TIIA-QAEQGVIGSTAVAFGQTEGD--CTAIYVV 271 (302)
T ss_dssp E-EEBTTCCEEEECBTTCCEEEECTTCCE--EEEE-CGGGTCTTEEEEEECCSTTT--TTEEEEE
T ss_pred E-EECCCCCEEEEECCCCCEEEECCCCCE--EEEE-ECCCCCCCCEEEEECCCCCC--CCEEEEE
T ss_conf 3-787999999997489918998789978--9999-63789888248997087887--8989999
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00073 Score=40.97 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=3.7
Q ss_pred CCCCHHHHHHHH
Q ss_conf 599978999999
Q 000836 646 SEPQPEVRASAV 657 (1262)
Q Consensus 646 ~D~sPeVRaa~v 657 (1262)
+|..++||.++.
T Consensus 675 ~~~~~~vr~~a~ 686 (888)
T d1qbkb_ 675 QDKMPEVRQSSF 686 (888)
T ss_dssp TCSSHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 799768999999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.70 E-value=0.0015 Score=38.69 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=100.2
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCC-CEE--EEEECCCCCCCCEEEEEEEECCCCCEEE-EEECCCEE
Q ss_conf 688998289999379999999968-993999988999-288--8940799999985899985418996899-99379829
Q 000836 1032 TRFEKGTKTALLQPFSPIVVAADE-NERIKIWNYEED-TLL--NSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNI 1106 (1262)
Q Consensus 1032 ~~~~~~V~sl~fspdg~~Lvsgs~-dg~I~IWD~~tg-~~l--~~l~~h~~~~~~ItsL~fsn~~dg~lLv-TgS~DG~I 1106 (1262)
.+.+..+.++.|+|+++++++++. .+.|.+|+.... ... ...... .++.....+.|+ ++++++. +...++.|
T Consensus 141 ~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~--pdg~~~yv~~e~~~~V 217 (365)
T d1jofa_ 141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMH--PTGNYLYALMEAGNRI 217 (365)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEEC--TTSSEEEEEETTTTEE
T ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEC-CCCCCEEEEEEC--CCCCEEEEECCCCCEE
T ss_conf 6889811597888999989982079987999970688716652511112-788740899988--9986699951589989
Q ss_pred EEEECCCCCCCCEEEEEEEECC---CCCC-------CCCCCCEEEEECCCCCEEEEEE--CC----CEEEEEECCCCCEE
Q ss_conf 9998678788522774001024---7899-------5001420488707999899996--89----80999968888513
Q 000836 1107 RIWKDYDQKDKQKLVTAFSSIQ---GHKP-------GVRCSNVVVDWQQQSGYLYASG--EV----SSIMLWDLEKEQQM 1170 (1262)
Q Consensus 1107 rIWD~~~~~g~~~lvsa~~~l~---~h~~-------~V~sv~l~i~wsp~~~~Llssg--~D----g~IrIWDlrs~~~~ 1170 (1262)
.+|+... +....+....... .... ........+.++|++.+++++. .+ ..|..|++.... .
T Consensus 218 ~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g-~ 294 (365)
T d1jofa_ 218 CEYVIDP--ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG-S 294 (365)
T ss_dssp EEEEECT--TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS-C
T ss_pred EEEEECC--CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCC-C
T ss_conf 9999559--875377873124024556556665444435776316998999978997135787542279999856887-1
Q ss_pred EEE------ECCCCCCCEEEEEEECC-CCCEEEEE-ECCCCEEEEECCCCC
Q ss_conf 576------44999998269998749-99999999-789919999788998
Q 000836 1171 VNP------IPSSSDCSISALTASQV-HGGQLAAG-FVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1171 i~t------i~~hs~s~ItsLs~~s~-~g~lLasG-s~DGsVrIWDlrs~~ 1213 (1262)
+.. ....... ..++ .+.+ +|.+++++ ..++.|.+|+++...
T Consensus 295 ~~~~~~~~~~~~~G~~-p~~i-~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 295 IEKQLFLSPTPTSGGH-SNAV-SPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEEEEEECSSCCTT-CCCE-EECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEEEEEEEEEECCCCC-CCEE-EECCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 4467676677767998-6478-96489999999996799949999982886
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.0017 Score=38.25 Aligned_cols=193 Identities=9% Similarity=0.001 Sum_probs=114.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98289999379999999968993999988999288894079999998589998541899689999379829999867878
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~ 1115 (1262)
..+..+++.+++...++....+.+++++-.+...+...... ....++++. .+++++++-..+..+..++...
T Consensus 57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~----~~p~~iavd--~~g~i~v~d~~~~~~~~~~~~~-- 128 (260)
T d1rwia_ 57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVD--TQGAVYVADRGNNRVVKLAAGS-- 128 (260)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC----CSEEEEEEC--TTCCEEEEEGGGTEEEEECTTC--
T ss_pred CCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEEEE----EECCCCCCC--CCCEEEEECCCCCCCCCCCCCC--
T ss_conf 68408999389988986310000355421120000001000----000000245--5320575033555321123222--
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf 85227740010247899500142048870799989999689809999688885135764499999826999874999999
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lL 1195 (1262)
..... ....+ .....+ +.+.+++..+++....+.|..+|..... ........-.. ...+ ++.++++++
T Consensus 129 -~~~~~---~~~~~-~~~p~~----i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~-p~gi-~~d~~g~l~ 196 (260)
T d1rwia_ 129 -KTQTV---LPFTG-LNDPDG----VAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITA-PWGI-AVDEAGTVY 196 (260)
T ss_dssp -SSCEE---CCCCS-CCSCCE----EEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCS-EEEE-EECTTCCEE
T ss_pred -CEEEE---EEECC-CCCCCE----EEECCCCCEEEECCCCCCCCCCCCCCCE-EEEEECCCCCC-CCCC-EEEEEEEEE
T ss_conf -20122---32036-677520----5454899886410256433222343100-12221011478-7631-231000134
Q ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECC-CCEEEE
Q ss_conf 99978991999978899810232057887888939999942999989999439-955998
Q 000836 1196 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPK-CLPSFS 1254 (1262)
Q Consensus 1196 asGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSd-d~I~iW 1254 (1262)
++....+.|..++...... ... ... .-....++++.++ +.++++-.. +.|...
T Consensus 197 vsd~~~~~i~~~~~~~~~~--~~~-~~~-~~~~P~~i~~d~~--g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 197 VTEHNTNQVVKLLAGSTTS--TVL-PFT-GLNTPLAVAVDSD--RTVYVADRGNDRVVKL 250 (260)
T ss_dssp EEETTTTEEEEECTTCSCC--EEC-CCC-SCCCEEEEEECTT--CCEEEEEGGGTEEEEE
T ss_pred EEECCCCEEEEEECCCCEE--EEE-CCC-CCCCEEEEEEECC--CCEEEEECCCCEEEEE
T ss_conf 3214899899996999769--997-069-9898179999089--9999997999989999
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.0019 Score=37.92 Aligned_cols=156 Identities=8% Similarity=-0.058 Sum_probs=75.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98289999379999999968993999988999288894079999998589998541899689999379829999867878
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~ 1115 (1262)
..+..+++.+++.++++-.....+.+++.............. .....+.+. +++.++++...++.|..++...
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~i~~~--~~g~~~v~~~~~~~i~~~d~~~-- 170 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVD--NSGNVYVTDTDNNRVVKLEAES-- 170 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC---CSCCEEEEC--TTCCEEEEEGGGTEEEEECTTT--
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCC---CCCCEEEEC--CCCCEEEECCCCCCCCCCCCCC--
T ss_conf 000000245532057503355532112322220122320366---775205454--8998864102564332223431--
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf 85227740010247899500142048870799989999689809999688885135764499999826999874999999
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1195 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~s~~g~lL 1195 (1262)
..... ........... +++.+++..+++....+.|..++..... ...+....-...+.| ++.++++++
T Consensus 171 -~~~~~----~~~~~~~~p~g----i~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~~~~~~~~~P~~i-~~d~~g~l~ 238 (260)
T d1rwia_ 171 -NNQVV----LPFTDITAPWG----IAVDEAGTVYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTPLAV-AVDSDRTVY 238 (260)
T ss_dssp -CCEEE----CCCSSCCSEEE----EEECTTCCEEEEETTTTEEEEECTTCSC--CEECCCCSCCCEEEE-EECTTCCEE
T ss_pred -CEEEE----EECCCCCCCCC----CEEEEEEEEEEEECCCCEEEEEECCCCE--EEEECCCCCCCEEEE-EEECCCCEE
T ss_conf -00122----21011478763----1231000134321489989999699976--999706998981799-990899999
Q ss_pred EEEECCCCEEEEECC
Q ss_conf 999789919999788
Q 000836 1196 AAGFVDGSVRLYDVR 1210 (1262)
Q Consensus 1196 asGs~DGsVrIWDlr 1210 (1262)
++-..++.|+.++.+
T Consensus 239 vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 239 VADRGNDRVVKLTSL 253 (260)
T ss_dssp EEEGGGTEEEEECCC
T ss_pred EEECCCCEEEEEECC
T ss_conf 997999989999599
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.0019 Score=37.89 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=10.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 7743205999789999999995201
Q 000836 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 640 ~l~~ll~D~sPeVRaa~v~aL~~~i 664 (1262)
.+..+++|++|.+|+.++.++..++
T Consensus 966 ~L~~~l~~~~~~~r~~ai~~l~~~~ 990 (1207)
T d1u6gc_ 966 RLKGYLISGSSYARSSVVTAVKFTI 990 (1207)
T ss_dssp HHTTTSSSSCHHHHHHHHHHTGGGC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999857999999999999999999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.62 E-value=0.0019 Score=37.87 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=117.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CCCCEEEEEEEECCCCCEEEEEECC-----------
Q ss_conf 9828999937999999996899399998899928889407999-9998589998541899689999379-----------
Q 000836 1036 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCN----------- 1103 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~-~~~~ItsL~fsn~~dg~lLvTgS~D----------- 1103 (1262)
..+..+.|.+++..+++++..+.|...+............... +-...+++.+. +++.+.++-...
T Consensus 71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d--~~G~lyvtd~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEC--CCCCEEEECCCCCCCCCCCCCEE
T ss_conf 8530699907999899997798399994777479997334324545787278988--89989991486675432011000
Q ss_pred --CEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCC----EEEEE-ECCCEEEEEECCCCCEEE-----
Q ss_conf --829999867878852277400102478995001420488707999----89999-689809999688885135-----
Q 000836 1104 --GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG----YLYAS-GEVSSIMLWDLEKEQQMV----- 1171 (1262)
Q Consensus 1104 --G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~----~Llss-g~Dg~IrIWDlrs~~~~i----- 1171 (1262)
..-++|.... +++...+ .......+. +.|++++. .++++ +..+.|..+|+.... .+
T Consensus 149 ~~~~G~v~~~~~-dg~~~~~------~~~~~~pNG----i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g-~~~~~~~ 216 (314)
T d1pjxa_ 149 QEKFGSIYCFTT-DGQMIQV------DTAFQFPNG----IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-KIENKKV 216 (314)
T ss_dssp SSSCEEEEEECT-TSCEEEE------EEEESSEEE----EEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-EEEEEEE
T ss_pred CCCCCEEEEEEE-CCCEEEE------ECCCCEEEE----EEECCCCCCCEEEEEEEEECCCCEEEEECCCCC-CCCEEEE
T ss_conf 268843899952-5740375------078532213----699788776303799986024311776116765-4301568
Q ss_pred -EEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCC-EEEEECC-
Q ss_conf -7644999998269998749999999997899199997889981023205788788893999994299998-9999439-
Q 000836 1172 -NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA-KVNGTPK- 1248 (1262)
Q Consensus 1172 -~ti~~hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~-~LvSgSd- 1248 (1262)
..+..........+ ++..+|+++++....+.|.+||...+. ....+... ....++++|.++ ++ .+++.+.
T Consensus 217 ~~~~~~~~~~~pdGi-avD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p---~~~~t~~afg~d--~~~lyVt~~~~ 289 (314)
T d1pjxa_ 217 WGHIPGTHEGGADGM-DFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCP---FEKPSNLHFKPQ--TKTIFVTEHEN 289 (314)
T ss_dssp EEECCCCSSCEEEEE-EEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECS---SSCEEEEEECTT--SSEEEEEETTT
T ss_pred EEECCCCCCCCCEEE-EEECCCCEEEEECCCCEEEEEECCCCE-EEEEEECC---CCCEEEEEEECC--CCEEEEEECCC
T ss_conf 997133566641025-783478579998279999999699997-99999799---998789999289--89999998789
Q ss_pred CCEEEEEC
Q ss_conf 95599844
Q 000836 1249 CLPSFSDL 1256 (1262)
Q Consensus 1249 d~I~iWDL 1256 (1262)
+.|...++
T Consensus 290 g~i~~~~~ 297 (314)
T d1pjxa_ 290 NAVWKFEW 297 (314)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEEC
T ss_conf 91999978
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.46 E-value=0.0031 Score=36.35 Aligned_cols=198 Identities=10% Similarity=0.121 Sum_probs=104.8
Q ss_pred EEEEEECCCCC-EEEEE-ECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 28999937999-99999-68993999988999288894079999998589998541899689999379829999867878
Q 000836 1038 TKTALLQPFSP-IVVAA-DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1115 (1262)
Q Consensus 1038 V~sl~fspdg~-~Lvsg-s~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~~ 1115 (1262)
+..+.+..+.. .+++. +.++.|.+++.. +.....+.... ......+... .++.++++....+.+.+++..
T Consensus 72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~--~~~p~~~avd--~~G~i~v~~~~~~~~~~~~~~--- 143 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATI--LQHPRGVTVD--NKGRIIVVECKVMRVIIFDQN--- 143 (279)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTT--CSCEEEEEEC--TTSCEEEEETTTTEEEEECTT---
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCC-CCCEEECCCCC--CCCCCEECCC--CCCCEEEEEECCCEEEEECCC---
T ss_conf 630001234455200004775310000025-63024038886--4254200001--478479996326325676268---
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC--CCCCCEEEEEEECCCCC
Q ss_conf 8522774001024789950014204887079998999968980999968888513576449--99998269998749999
Q 000836 1116 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS--SSDCSISALTASQVHGG 1193 (1262)
Q Consensus 1116 g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~--hs~s~ItsLs~~s~~g~ 1193 (1262)
++ ++..+.. ..+...... +...+++..+++....+.|.++|.. ++ .+.++.. ... ....| +..++|+
T Consensus 144 g~--~~~~~g~-~~~~~~~~~----i~~d~~g~i~v~d~~~~~V~~~d~~-G~-~~~~~g~~g~~~-~P~gi-avD~~G~ 212 (279)
T d1q7fa_ 144 GN--VLHKFGC-SKHLEFPNG----VVVNDKQEIFISDNRAHCVKVFNYE-GQ-YLRQIGGEGITN-YPIGV-GINSNGE 212 (279)
T ss_dssp SC--EEEEEEC-TTTCSSEEE----EEECSSSEEEEEEGGGTEEEEEETT-CC-EEEEESCTTTSC-SEEEE-EECTTCC
T ss_pred CC--EEECCCC-CCCCCCCCE----EEECCCEEEEEEECCCCCEEEEECC-CC-EEEEECCCCCCC-CCCCC-CCCCCCE
T ss_conf 75--0100220-010256624----3201200178620135510023047-94-445301132114-87623-2314786
Q ss_pred EEEEEEC-CCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCC
Q ss_conf 9999978-99199997889981023205788788893999994299998999943995599844310
Q 000836 1194 QLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTPKCLPSFSDLIYF 1259 (1262)
Q Consensus 1194 lLasGs~-DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgSdd~I~iWDLryf 1259 (1262)
++++-.. ++.|.+|+. .++ .+..+... ........+++.++ +.++++...+.|++|.....
T Consensus 213 i~Vad~~~~~~v~~f~~-~G~-~~~~~~~~-~~~~~p~~vav~~d--G~l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 213 ILIADNHNNFNLTIFTQ-DGQ-LISALESK-VKHAQCFDVALMDD--GSVVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEECSSSCEEEEECT-TSC-EEEEEEES-SCCSCEEEEEEETT--TEEEEEETTTEEEEEECSCC
T ss_pred EEEEECCCCCEEEEECC-CCC-EEEEEECC-CCCCCEEEEEEECC--CCEEEEECCCEEEEEEEEEE
T ss_conf 99997899808999999-999-99999688-88898837999089--91999918996999872203
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.45 E-value=0.00028 Score=44.04 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=63.1
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 46999999521799999999677899999999862027615568641138247774320599978999999999520145
Q 000836 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1262)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~i~~ 666 (1262)
..+..++..|+ |++|.+|..++.+||.+... .+...|..+++|+.|.||.+++.+|+.+-.
T Consensus 22 ~~~~~L~~~l~-------d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~- 82 (111)
T d1te4a_ 22 EAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG- 82 (111)
T ss_dssp TTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 89999999974-------99878999999998761012-----------327998733023033799999999998676-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 766678898899877759999999999999985206899435999999999
Q 000836 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 717 (1262)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~E~~~~ls 717 (1262)
......|..++.|.++.||++++.+|.
T Consensus 83 ------------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ------------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ------------------------CCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ------------------------114999999882998999999999987
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.28 E-value=0.00033 Score=43.45 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=56.5
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 33777887503889817899999999999951990145999864469999995217999999996778999999998620
Q 000836 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1262)
Q Consensus 543 ~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~ 622 (1262)
.....++..|.+++ +..|..++.+|+.+. ..+.+..+...|+ |++|.||..++.+||++.
T Consensus 22 ~~~~~L~~~l~d~~--~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~VR~~a~~aL~~i~ 81 (111)
T d1te4a_ 22 EAFEPLLESLSNED--WRIRGAAAWIIGNFQ-----------DERAVEPLIKLLE-------DDSGFVRSGAARSLEQIG 81 (111)
T ss_dssp TTHHHHHHGGGCSC--HHHHHHHHHHHGGGC-----------SHHHHHHHHHHHH-------HCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHC
T ss_conf 89999999974998--789999999987610-----------1232799873302-------303379999999999867
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 2761556864113824777432059997899999999952
Q 000836 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 662 (1262)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~ 662 (1262)
.. .+...|..+++|+++.||.+++.+|.+
T Consensus 82 ~~-----------~~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 82 GE-----------RVRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp SH-----------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CC-----------CHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 61-----------149999998829989999999999876
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0065 Score=34.04 Aligned_cols=153 Identities=8% Similarity=-0.036 Sum_probs=69.8
Q ss_pred CEEEEEEEECCCCCEEEEEEC-C---CEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEE---EEE
Q ss_conf 858999854189968999937-9---829999867878852277400102478995001420488707999899---996
Q 000836 1082 GISKLCLVNELDVSLLLVASC-N---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY---ASG 1154 (1262)
Q Consensus 1082 ~ItsL~fsn~~dg~lLvTgS~-D---G~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Ll---ssg 1154 (1262)
-+..+.|+ +++.+++.... + ..+.++|..+ ++...+.. .....++........|.+++..++ ..-
T Consensus 256 y~~~~~W~--~d~~~~~~~~nR~q~~~~i~~~d~~t--g~~~~~~~----e~~~~wv~~~~~~p~~~~dg~~~~fi~~se 327 (465)
T d1xfda1 256 YITMVKWA--TSTKVAVTWLNRAQNVSILTLCDATT--GVCTKKHE----DESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (465)
T ss_dssp EEEEEEES--SSSEEEEEEEETTSCEEEEEEEETTT--CCEEEEEE----EECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred EEEEEEEC--CCCEEEEEEECCCCCCCEEEEECCCC--CCEEEEEE----ECCCCEEECCCCCEEECCCCCEEEEEEEEE
T ss_conf 04566875--79938999974100301379970799--92787789----727851735678605746898057777654
Q ss_pred CC--CEEEEEECC------CCCEEEEEECCCCCCCEEEEEEECCCCC-EEEEEECCC--CEEEEECCC--CCCEEEEECC
Q ss_conf 89--809999688------8851357644999998269998749999-999997899--199997889--9810232057
Q 000836 1155 EV--SSIMLWDLE------KEQQMVNPIPSSSDCSISALTASQVHGG-QLAAGFVDG--SVRLYDVRT--PDMLVCSTRP 1221 (1262)
Q Consensus 1155 ~D--g~IrIWDlr------s~~~~i~ti~~hs~s~ItsLs~~s~~g~-lLasGs~DG--sVrIWDlrs--~~~~v~~~~~ 1221 (1262)
.+ +.+...++. .+. .+..+..+. ..|+.+..+...+. ++.++..++ .-.+|.+.. .. ....+..
T Consensus 328 ~~g~~~ly~~~~~~~~~~~~~~-~~~~LT~G~-w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~-~~~~lt~ 404 (465)
T d1xfda1 328 QGGRGKFYHITVSSSQPNSSND-NIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSC 404 (465)
T ss_dssp CSSSSCEEEEEEECSSCCSSSC-CCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSST
T ss_pred ECCCCCEEEEEECCCCCCCCCC-EEEEECCCC-CEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCC-CCEEECC
T ss_conf 3166716899831566667886-269822699-219977898389999999996899982689999778998-6055314
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf 88788893999994299998999943
Q 000836 1222 HTQQVERVVGISFQPGLDPAKVNGTP 1247 (1262)
Q Consensus 1222 ~~gH~~~V~sIafspd~~g~~LvSgS 1247 (1262)
.........++.|+|+ +.+++-..
T Consensus 405 ~~~~~~~~~~~~~S~~--~~y~v~~~ 428 (465)
T d1xfda1 405 DLVENCTYFSASFSHS--MDFFLLKC 428 (465)
T ss_dssp TSSSSCCCCEEEECTT--SSEEEEEC
T ss_pred CCCCCCCEEEEEECCC--CCEEEEEE
T ss_conf 4678898799999999--99999980
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.13 E-value=0.0068 Score=33.86 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=98.4
Q ss_pred CCEEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEC-CCE
Q ss_conf 9858999854189968999937-98299998678788522774001024789950014204887079998999968-980
Q 000836 1081 KGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSS 1158 (1262)
Q Consensus 1081 ~~ItsL~fsn~~dg~lLvTgS~-DG~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~-Dg~ 1158 (1262)
..+.++.|+ +|+++++++.. ...|.+|+... .+....+...... ......+. +.|++++.++++... ++.
T Consensus 145 ~h~h~v~~s--PdG~~l~v~d~g~d~v~~~~~~~-~g~~~~~~~~~~~-~~g~gPr~----i~f~pdg~~~yv~~e~~~~ 216 (365)
T d1jofa_ 145 TGIHGMVFD--PTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAP-DPGDHPRW----VAMHPTGNYLYALMEAGNR 216 (365)
T ss_dssp CCEEEEEEC--TTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECS-STTCCEEE----EEECTTSSEEEEEETTTTE
T ss_pred CCCEEEEEC--CCCCEEEEEECCCCEEEEEECCC-CCCEEECCCEEEC-CCCCCEEE----EEECCCCCEEEEECCCCCE
T ss_conf 811597888--99998998207998799997068-8716652511112-78874089----9988998669995158998
Q ss_pred EEEEECCCCCE-EE---EEECCC-------------CCCCEEEEEEECCCCCEEEEEEC-C-----CCEEEEECCCCCCE
Q ss_conf 99996888851-35---764499-------------99982699987499999999978-9-----91999978899810
Q 000836 1159 IMLWDLEKEQQ-MV---NPIPSS-------------SDCSISALTASQVHGGQLAAGFV-D-----GSVRLYDVRTPDML 1215 (1262)
Q Consensus 1159 IrIWDlrs~~~-~i---~ti~~h-------------s~s~ItsLs~~s~~g~lLasGs~-D-----GsVrIWDlrs~~~~ 1215 (1262)
|.+|+...... .+ ...+.- .......+ .++++|.+++++.. + +.|..|+.......
T Consensus 217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~ 295 (365)
T d1jofa_ 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC-ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE-EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCE-EECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCE
T ss_conf 99999559875377873124024556556665444435776316-99899997899713578754227999985688714
Q ss_pred EEEE--CCCCCCCCCEEEEEEECCCCCCEEEEEC--CCCEEEEECC
Q ss_conf 2320--5788788893999994299998999943--9955998443
Q 000836 1216 VCST--RPHTQQVERVVGISFQPGLDPAKVNGTP--KCLPSFSDLI 1257 (1262)
Q Consensus 1216 v~~~--~~~~gH~~~V~sIafspd~~g~~LvSgS--dd~I~iWDLr 1257 (1262)
.... ........+..+++++|. ++++|+.+. ++.+.+|++.
T Consensus 296 ~~~~~~~~~~~~G~~p~~i~~~p~-~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 296 EKQLFLSPTPTSGGHSNAVSPCPW-SDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEEEEECSSCCTTCCCEEECTT-CTTEEEEECSSSCEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCEEEECCC-CCCEEEEEECCCCEEEEEEEE
T ss_conf 467676677767998647896489-999999996799949999982
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.007 Score=33.81 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=11.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 7743205999789999999995201
Q 000836 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1262)
Q Consensus 640 ~l~~ll~D~sPeVRaa~v~aL~~~i 664 (1262)
.+...++|..+.||.+++.+++.+.
T Consensus 643 ~l~~~l~~~~~~v~~~a~~~l~~i~ 667 (861)
T d2bpta1 643 YLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9998737998899999999999999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.10 E-value=0.0073 Score=33.65 Aligned_cols=195 Identities=8% Similarity=-0.001 Sum_probs=113.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEEC----CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECC----C
Q ss_conf 88998289999379999999968----993999988999288894079999998589998541899689999379----8
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADE----NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----G 1104 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~----dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~D----G 1104 (1262)
.....+..+++++++.++++... .+.|...+........... +........++.+. +++.+.++.... .
T Consensus 79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~nd~~~d--~~G~l~vtd~~~~~~~~ 155 (319)
T d2dg1a1 79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-DLSTAYCIDDMVFD--SKGGFYFTDFRGYSTNP 155 (319)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-SSSSCCCEEEEEEC--TTSCEEEEECCCBTTBC
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECC-CCCCCCCCCCEEEE--ECCCEEECCCCCCCCCC
T ss_conf 8998703899999999999956897311049987389963644426-77755587522677--30653200135400257
Q ss_pred EEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEE-------EECC
Q ss_conf 2999986787885227740010247899500142048870799989999-6898099996888851357-------6449
Q 000836 1105 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVN-------PIPS 1176 (1262)
Q Consensus 1105 ~IrIWD~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llss-g~Dg~IrIWDlrs~~~~i~-------ti~~ 1176 (1262)
.-.+|......+.... +.......+. +.|+++++.++++ ...+.|..||+........ ....
T Consensus 156 ~g~v~~~~~dg~~~~~------~~~~~~~pnG----ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~ 225 (319)
T d2dg1a1 156 LGGVYYVSPDFRTVTP------IIQNISVANG----IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 225 (319)
T ss_dssp CEEEEEECTTSCCEEE------EEEEESSEEE----EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred CCEEEEEECCCCEEEE------EEECCCEEEE----EEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCC
T ss_conf 4215788416633578------8612330100----01012221278740468914799976998362024633331257
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCC---CCCCCCEEEEEEECCCCCCEEEEE
Q ss_conf 9999826999874999999999789919999788998102320578---878889399999429999899994
Q 000836 1177 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH---TQQVERVVGISFQPGLDPAKVNGT 1246 (1262)
Q Consensus 1177 hs~s~ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~---~gH~~~V~sIafspd~~g~~LvSg 1246 (1262)
.... ...| ++..+|++.++....|.|.+||. .++ .+..+... .++...+++++|.++ ...++..
T Consensus 226 ~~~~-PdGl-~vD~~G~l~Va~~~~g~V~~~~p-~G~-~l~~i~~P~~~~~~~~~~~~~~~~~~--~~~~~~t 292 (319)
T d2dg1a1 226 GHEG-PDSC-CIDSDDNLYVAMYGQGRVLVFNK-RGY-PIGQILIPGRDEGHMLRSTHPQFIPG--TNQLIIC 292 (319)
T ss_dssp SSSE-EEEE-EEBTTCCEEEEEETTTEEEEECT-TSC-EEEEEECTTGGGTCSCBCCEEEECTT--SCEEEEE
T ss_pred CCCC-EEEE-EECCCCCEEEEECCCCEEEEECC-CCC-EEEEEECCCCCCCCCCEEEEEEEECC--CCEEEEE
T ss_conf 7641-0364-17389999999848998999979-995-98899688757786750466778079--9889998
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.76 E-value=0.0041 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=9.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 774320599978999999999
Q 000836 640 IYVPLLSEPQPEVRASAVFSL 660 (1262)
Q Consensus 640 ~l~~ll~D~sPeVRaa~v~aL 660 (1262)
.+..+++|+.|+||.+++-.|
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L 186 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL 186 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHC
T ss_conf 999870599889999999845
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.00 E-value=0.035 Score=28.66 Aligned_cols=166 Identities=10% Similarity=0.107 Sum_probs=102.9
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 24688998289999379999999968993999988999288894079999998589998541899689999379829999
Q 000836 1030 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1030 W~~~~~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
+.......+..+++.+++.++++....+.+.+++.. ++.+..+..... ......+.+. .++.++++....+.|.+|
T Consensus 108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~-~~~~~~i~~d--~~g~i~v~d~~~~~V~~~ 183 (279)
T d1q7fa_ 108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH-LEFPNGVVVN--DKQEIFISDNRAHCVKVF 183 (279)
T ss_dssp ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT-CSSEEEEEEC--SSSEEEEEEGGGTEEEEE
T ss_pred CCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCC-CCCCCEEEEC--CCEEEEEEECCCCCEEEE
T ss_conf 388864254200001478479996326325676268-750100220010-2566243201--200178620135510023
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEE
Q ss_conf 867878852277400102478995001420488707999899996-8980999968888513576449999-98269998
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTA 1187 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg-~Dg~IrIWDlrs~~~~i~ti~~hs~-s~ItsLs~ 1187 (1262)
+... +. +..+. ..+......+ +++.+++..+++-. .++.|.+++. .++ .+.++..... .....+ +
T Consensus 184 d~~G---~~--~~~~g-~~g~~~~P~g----iavD~~G~i~Vad~~~~~~v~~f~~-~G~-~~~~~~~~~~~~~p~~v-a 250 (279)
T d1q7fa_ 184 NYEG---QY--LRQIG-GEGITNYPIG----VGINSNGEILIADNHNNFNLTIFTQ-DGQ-LISALESKVKHAQCFDV-A 250 (279)
T ss_dssp ETTC---CE--EEEES-CTTTSCSEEE----EEECTTCCEEEEECSSSCEEEEECT-TSC-EEEEEEESSCCSCEEEE-E
T ss_pred ECCC---CE--EEEEC-CCCCCCCCCC----CCCCCCCEEEEEECCCCCEEEEECC-CCC-EEEEEECCCCCCCEEEE-E
T ss_conf 0479---44--45301-1321148762----3231478699997899808999999-999-99999688888988379-9
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 74999999999789919999788998
Q 000836 1188 SQVHGGQLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1188 ~s~~g~lLasGs~DGsVrIWDlrs~~ 1213 (1262)
..++|.++++ ..+..|++|......
T Consensus 251 v~~dG~l~V~-~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 251 LMDDGSVVLA-SKDYRLYIYRYVQLA 275 (279)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EECCCCEEEE-ECCCEEEEEEEEEEC
T ss_conf 9089919999-189969998722035
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.063 Score=26.82 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=94.8
Q ss_pred CCEEEEEECCCCCEEEEEECC---CCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEE-CCCEEEEEEC
Q ss_conf 982899993799999999689---939999889992888940799999985899985418996899993-7982999986
Q 000836 1036 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKD 1111 (1262)
Q Consensus 1036 ~~V~sl~fspdg~~Lvsgs~d---g~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS-~DG~IrIWD~ 1111 (1262)
..+..-+|+|||+.||..... ..+.+.+...+... .+..+. .......|+ +++..++... .++...++..
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~s--pdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFP---RHNGAPAFS--PDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCS---SCEEEEEEC--TTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEE---CCCCCCEEC--CCCCEEEEEEECCCCCCEEEC
T ss_conf 84260388789998999981526751344311367506-776420---245430244--889864676402786410000
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEE-ECCCE--EEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 787885227740010247899500142048870799989999-68980--999968888513576449999982699987
Q 000836 1112 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTAS 1188 (1262)
Q Consensus 1112 ~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llss-g~Dg~--IrIWDlrs~~~~i~ti~~hs~s~ItsLs~~ 1188 (1262)
....... ............ ..+...+..++.. ..++. |...++.... ...+...... .... .+
T Consensus 113 ~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~-~~~~-~~ 178 (269)
T d2hqsa1 113 DLASGQI------RQVTDGRSNNTE----PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQ-NQDA-DV 178 (269)
T ss_dssp ETTTCCE------EECCCCSSCEEE----EEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSE-EEEE-EE
T ss_pred CCCCCCC------EEEEECCCCCCC----CCCCCCCCCCEECCCCCCCCEEEEEECCCCC--CEEEECCCCC-CCCC-CC
T ss_conf 2221220------000101442114----5434554433000012687438654213310--0010001222-2343-22
Q ss_pred CCCCCEEEEEECC-CCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEC-C-C--CEEEEEC
Q ss_conf 4999999999789-9199997889981023205788788893999994299998999943-9-9--5599844
Q 000836 1189 QVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-K-C--LPSFSDL 1256 (1262)
Q Consensus 1189 s~~g~lLasGs~D-GsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgS-d-d--~I~iWDL 1256 (1262)
++++..++....+ |...+|............ .. ........|+|+ |+.|+-.+ . + .+.++++
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~---~~~~~~p~~SPD--G~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-SS---TFLDETPSLAPN--GTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-CC---SSSCEEEEECTT--SSEEEEEEEETTEEEEEEEET
T ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCCCEEE-EC---CCCCCCEEECCC--CCEEEEEECCCCCCEEEEEEC
T ss_conf 34543057786058801256760356440585-06---865445589899--999999981799847999999
|
| >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Caspase-like superfamily: Caspase-like family: Caspase catalytic domain domain: Caspase-9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.065 Score=26.70 Aligned_cols=154 Identities=9% Similarity=-0.009 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH-CCCC-CCCEEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 2579999999999999986333562001599988999999985-0369-9950999983789898888870898508987
Q 000836 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTC-RRYA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYT 219 (1262)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~dp~~~~~~~~~~~~-r~~~-~~~rvlfhy~ghg~p~pt~~g~i~~f~~~~t 219 (1262)
+.+=.+.|.+.|+ .+ .-.+....|.+.+++++....+ ++.. ..+.++|.|-|||+.....+....++..+.
T Consensus 44 a~~Da~~l~~~l~----~l--GF~V~~~~nlt~~~~~~~l~~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~- 116 (277)
T d1nw9b_ 44 SNIDCEKLRRRFS----SL--HFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDG- 116 (277)
T ss_dssp HHHHHHHHHHHHH----HT--TEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTS-
T ss_pred CHHHHHHHHHHHH----HC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-
T ss_conf 1999999999998----88--9989995189999999999986663146888799999478764456454576137766-
Q ss_pred EEECC-------CHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCC---------------------------CCCCCC
Q ss_conf 03203-------45777643199969999299330689999861027---------------------------888999
Q 000836 220 QYIPL-------PISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW---------------------------GASNYS 265 (1262)
Q Consensus 220 ~yip~-------~~~~l~~~~~~p~~~v~Dc~~Ag~i~~~~~~~~~~---------------------------~~~~~~ 265 (1262)
+.+++ ....+..--+.|.+||+||...|.+-......... ......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (277)
T d1nw9b_ 117 CPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSL 196 (277)
T ss_dssp CEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf 50027889987677663541457379998624687656663113567543444444344432100012344333441015
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHH
Q ss_conf 99775079985278687999999980344410303699
Q 000836 266 GSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPIT 303 (1262)
Q Consensus 266 ~~~~~~~~~~ac~~~e~lp~~p~lP~D~ftscL~tP~~ 303 (1262)
+...|.+...||.++...-.+++ .--.||..|..-++
T Consensus 197 p~~~d~~i~~st~~g~~a~~~~~-~gS~f~~~L~~~l~ 233 (277)
T d1nw9b_ 197 PTPSDIFVSYSTFPGFVSWRDPK-SGSWYVETLDDIFE 233 (277)
T ss_dssp CCSCSEEEEEECCCCBSSTTCTT-SCBHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHHHH
T ss_conf 77665069971565348744898-89899999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.95 E-value=0.077 Score=26.17 Aligned_cols=189 Identities=11% Similarity=0.078 Sum_probs=115.0
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-CCCCCCCEEEEEEEECCCCCEEEEEEC----CCEEEEE
Q ss_conf 99828999937999999996899399998899928889407-999999858999854189968999937----9829999
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASC----NGNIRIW 1109 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~-h~~~~~~ItsL~fsn~~dg~lLvTgS~----DG~IrIW 1109 (1262)
...+.++.+.+++.++++ +. ..|.++|..+++....... ...+...++++.+. +++.+.++... .+.-.+|
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd--~~G~iw~~~~~~~~~~~~g~l~ 133 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMH--PSGALWIGTMGRKAETGAGSIY 133 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEEC--TTSCEEEEEEETTCCTTCEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EE-CCCEEEECCCCEEEEEEEEECCCCCCCCEEEEEC--CCCCEEEEECCCCCCCCCEEEE
T ss_conf 998179899659988999-73-7638950464513578664047876610135797--9999988742643133330576
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCCC-------EEEEEECCCCCCC
Q ss_conf 86787885227740010247899500142048870799989999-689809999688885-------1357644999998
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQ-------QMVNPIPSSSDCS 1181 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llss-g~Dg~IrIWDlrs~~-------~~i~ti~~hs~s~ 1181 (1262)
+... ++...+ ..+ ....+. +.|++++..++.+ +..+.|..+++.... .....+......
T Consensus 134 ~~~~--g~~~~~-----~~~-~~~~Ng----~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~- 200 (295)
T d2ghsa1 134 HVAK--GKVTKL-----FAD-ISIPNS----ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG- 200 (295)
T ss_dssp EEET--TEEEEE-----EEE-ESSEEE----EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE-
T ss_pred EECC--CCEEEE-----EEC-CCCCCE----EEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCC-
T ss_conf 6229--968998-----650-687640----246587766898515663246764535555324535788416755566-
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEE-CCCCCCEEEEEC
Q ss_conf 269998749999999997899199997889981023205788788893999994-299998999943
Q 000836 1182 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ-PGLDPAKVNGTP 1247 (1262)
Q Consensus 1182 ItsLs~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafs-pd~~g~~LvSgS 1247 (1262)
...+ +...+|++.++....|.|..||.. ++ ....+.... ..+++++|- ++ ...+++|..
T Consensus 201 pdG~-~vD~~GnlWva~~~~g~V~~~dp~-G~-~~~~i~lP~---~~~T~~~FGG~d-~~~LyvTta 260 (295)
T d2ghsa1 201 MDGS-VCDAEGHIWNARWGEGAVDRYDTD-GN-HIARYEVPG---KQTTCPAFIGPD-ASRLLVTSA 260 (295)
T ss_dssp EEEE-EECTTSCEEEEEETTTEEEEECTT-CC-EEEEEECSC---SBEEEEEEESTT-SCEEEEEEB
T ss_pred CCCE-EECCCCCEEEEEECCCCEEEECCC-CC-EEEEECCCC---CCEEEEEEECCC-CCEEEEEEC
T ss_conf 6326-786999989532078846885699-92-866863899---852798982899-999999978
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=94.88 E-value=0.08 Score=26.05 Aligned_cols=200 Identities=11% Similarity=-0.044 Sum_probs=119.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99828999937999999996899399998899928889407999999858999854189968999937982999986787
Q 000836 1035 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1114 (1262)
Q Consensus 1035 ~~~V~sl~fspdg~~Lvsgs~dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIWD~~~~ 1114 (1262)
+..+..+++.|+|.++++...++.|..|+.. ++.. .+.... ..+.+++|. ++++++++...++.+..|+....
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~---~~~~gla~~--~dG~l~v~~~~~~~~~~~~~~~~ 99 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVE---GKVSGLAFT--SNGDLVATGWNADSIPVVSLVKS 99 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECS---SEEEEEEEC--TTSCEEEEEECTTSCEEEEEECT
T ss_pred CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CCEE-EEECCC---CCCCEEEEC--CCCCEEEEECCCCEEEEEEECCC
T ss_conf 9884787799998899996889989999089-9889-997179---985368986--77886998328953788871011
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC--------CC-CCCEEEE
Q ss_conf 88522774001024789950014204887079998999968980999968888513576449--------99-9982699
Q 000836 1115 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS--------SS-DCSISAL 1185 (1262)
Q Consensus 1115 ~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~--------hs-~s~ItsL 1185 (1262)
.+....+ ... ......+. +.+.+++..+++....+.+..+|..... ....... .. ......+
T Consensus 100 ~~~~~~~---~~~-~~~~~~n~----i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi 170 (302)
T d2p4oa1 100 DGTVETL---LTL-PDAIFLNG----ITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGL 170 (302)
T ss_dssp TSCEEEE---EEC-TTCSCEEE----EEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred CCCEEEC---CCC-CCCCCCCE----EEECCCCCEEEECCCCCCCEEEECCCCC-CEEEECCCCCCEEECCCCCCCCCCC
T ss_conf 1101210---235-78632216----6771579787503565541024216873-0367518864014315763224320
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEC-CCCEEEEEC
Q ss_conf 98749999999997899199997889981023205788788893999994299998999943-995599844
Q 000836 1186 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKVNGTP-KCLPSFSDL 1256 (1262)
Q Consensus 1186 s~~s~~g~lLasGs~DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd~~g~~LvSgS-dd~I~iWDL 1256 (1262)
.+. .+.++++.+.++.|..++......... ..... ......++++.++ +.++++.. .+.+..++.
T Consensus 171 -~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~pdgia~d~d--G~l~va~~~~~~V~~i~p 236 (302)
T d2p4oa1 171 -KRF-GNFLYVSNTEKMLLLRIPVDSTDKPGE-PEIFV-EQTNIDDFAFDVE--GNLYGATHIYNSVVRIAP 236 (302)
T ss_dssp -EEE-TTEEEEEETTTTEEEEEEBCTTSCBCC-CEEEE-ESCCCSSEEEBTT--CCEEEECBTTCCEEEECT
T ss_pred -CCC-CCCEEEECCCCCEEEECCCCCCCCCCC-CCCCC-CCCCCCCEEECCC--CCEEEEECCCCCEEEECC
T ss_conf -116-983044037887698634433332345-31015-8998752378799--999999748991899878
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.73 E-value=0.087 Score=25.77 Aligned_cols=164 Identities=12% Similarity=0.092 Sum_probs=96.2
Q ss_pred CEEEEEECCCCCEEEEEEC---------------CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCC---CEEE
Q ss_conf 8289999379999999968---------------993999988999288894079999998589998541899---6899
Q 000836 1037 GTKTALLQPFSPIVVAADE---------------NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV---SLLL 1098 (1262)
Q Consensus 1037 ~V~sl~fspdg~~Lvsgs~---------------dg~I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg---~lLv 1098 (1262)
.++.+.+.+++.+.++... .|.|..++.. ++...... .. ..-+.+.|+...++ .+.+
T Consensus 118 ~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~---~~pNGi~~~~d~d~~~~~lyv 192 (314)
T d1pjxa_ 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF---QFPNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE---SSEEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEEC-CC---CEEEEEEECCCCCCCEEEEEE
T ss_conf 87278988899899914866754320110002688438999525-74037507-85---322136997887763037999
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEEEECCCC-CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99379829999867878852277400102478-99500142048870799989999689809999688885135764499
Q 000836 1099 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1177 (1262)
Q Consensus 1099 TgS~DG~IrIWD~~~~~g~~~lvsa~~~l~~h-~~~V~sv~l~i~wsp~~~~Llssg~Dg~IrIWDlrs~~~~i~ti~~h 1177 (1262)
+-+..+.|..|++.. .+...-...+..+... .....+ +++..++...++....+.|.+||.+.+. .+..+..+
T Consensus 193 ~d~~~~~i~~~d~~~-~g~~~~~~~~~~~~~~~~~~pdG----iavD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~~p 266 (314)
T d1pjxa_ 193 AETPTKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADG----MDFDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCP 266 (314)
T ss_dssp EETTTTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEE----EEEBTTCCEEEEEETTTEEEEECTTCBS-CSEEEECS
T ss_pred EEECCCCEEEEECCC-CCCCCEEEEEEECCCCCCCCCEE----EEEECCCCEEEEECCCCEEEEEECCCCE-EEEEEECC
T ss_conf 860243117761167-65430156899713356664102----5783478579998279999999699997-99999799
Q ss_pred CCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCCC
Q ss_conf 9998269998749999-99999789919999788998
Q 000836 1178 SDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPD 1213 (1262)
Q Consensus 1178 s~s~ItsLs~~s~~g~-lLasGs~DGsVrIWDlrs~~ 1213 (1262)
... .+++ ++.++++ ++++.+.+|.|..++.....
T Consensus 267 ~~~-~t~~-afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 267 FEK-PSNL-HFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp SSC-EEEE-EECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCC-EEEE-EEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 998-7899-9928989999998789919999789999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.11 Score=25.01 Aligned_cols=180 Identities=10% Similarity=0.022 Sum_probs=97.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEC-CCC--EEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 88998289999379999999968-993--999988999288894079999998589998541899689999379829999
Q 000836 1033 RFEKGTKTALLQPFSPIVVAADE-NER--IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1109 (1262)
Q Consensus 1033 ~~~~~V~sl~fspdg~~Lvsgs~-dg~--I~IWD~~tg~~l~~l~~h~~~~~~ItsL~fsn~~dg~lLvTgS~DG~IrIW 1109 (1262)
.+........|+|++..++.... .+. +..+............ .. .......++ ......+++...+|...+|
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~~~~~~g~~~i~ 154 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GR---SNNTEPTWF-PDSQNLAFTSDQAGRPQVY 154 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-CS---SCEEEEEEC-TTSSEEEEEECTTSSCEEE
T ss_pred EEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCCCCCCEEEEE-CC---CCCCCCCCC-CCCCCCEECCCCCCCCEEE
T ss_conf 420245430244889864676402786410000222122000010-14---421145434-5544330000126874386
Q ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEC-CCEEEEE--ECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 8678788522774001024789950014204887079998999968-9809999--688885135764499999826999
Q 000836 1110 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLW--DLEKEQQMVNPIPSSSDCSISALT 1186 (1262)
Q Consensus 1110 D~~~~~g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~-Dg~IrIW--Dlrs~~~~i~ti~~hs~s~ItsLs 1186 (1262)
......+.. ..+......... ..|++++..++..+. .+...+| |...+. . .+...... ....
T Consensus 155 ~~~~~~~~~------~~~~~~~~~~~~----~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~-~~~p- 219 (269)
T d2hqsa1 155 KVNINGGAP------QRITWEGSQNQD----ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V-QVLSSTFL-DETP- 219 (269)
T ss_dssp EEETTSSCC------EECCCSSSEEEE----EEECTTSSEEEEEEECSSCEEEEEEETTTCC--E-EECCCSSS-CEEE-
T ss_pred EEECCCCCC------EEEECCCCCCCC----CCCCCCCCEEEEEEECCCCEEEEEEECCCCC--C-EEEECCCC-CCCE-
T ss_conf 542133100------010001222234----3223454305778605880125676035644--0-58506865-4455-
Q ss_pred EECCCCCEEEEEEC---CCCEEEEECCCCCCEEEEECCCCCCCCCEEEEEEECC
Q ss_conf 87499999999978---9919999788998102320578878889399999429
Q 000836 1187 ASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1237 (1262)
Q Consensus 1187 ~~s~~g~lLasGs~---DGsVrIWDlrs~~~~v~~~~~~~gH~~~V~sIafspd 1237 (1262)
.|+|+|+.|+-.+. ...+.++++..+. ..... .. .+.+...+|+|-
T Consensus 220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt-~~---~g~~~~p~WSP~ 268 (269)
T d2hqsa1 220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-AT---DGQVKFPAWSPY 268 (269)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-CS---SSEEEEEEECCC
T ss_pred EECCCCCEEEEEECCCCCCEEEEEECCCCC-EEEEE-CC---CCCEEEEEECCC
T ss_conf 898999999999817998479999999997-79985-79---985883782898
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.12 Score=24.90 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=51.6
Q ss_pred CHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 4699999952179---9999999677899999999862027615568641138247774320599978999999999520
Q 000836 587 GLIHVCLKHLQGS---MPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1262)
Q Consensus 587 ~~~~~~~~~L~~~---~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL~~~ 663 (1262)
.++.+++++|... ...+...+|.+.+=+|.=+|.|+..++++|.+.-+.++-+.+..|++++.|+||.+|+.+++.+
T Consensus 392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999986204455554578823331335007799997853367998828399999886499979999999999999
Q ss_pred C
Q ss_conf 1
Q 000836 664 L 664 (1262)
Q Consensus 664 i 664 (1262)
+
T Consensus 472 m 472 (477)
T d1ho8a_ 472 I 472 (477)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.064 Score=26.75 Aligned_cols=58 Identities=7% Similarity=-0.103 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 78999999999999519901459998644699999952179999999967789999999986202
Q 000836 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1262)
Q Consensus 559 ~e~ra~~afiLs~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~ 623 (1262)
+..-|-||+=++.+|+.||.|+..+-+-|+=.+..++++ +++|+||-=+++|+++++.
T Consensus 416 ~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~-------h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 416 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN-------HSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS-------CSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHC-------CCCHHHHHHHHHHHHHHHH
T ss_conf 233313350077999978533679988283999998864-------9997999999999999998
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.47 E-value=0.073 Score=26.32 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 35662289906677799999999830591334464303337778875038898178999999999999519901459998
Q 000836 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI 584 (1262)
Q Consensus 505 yvlkLLqs~a~elr~~lvFIwa~il~~d~s~Q~dl~k~~~~~yf~~~L~~~~~~~e~ra~~afiLs~l~~~~~~gq~~~~ 584 (1262)
.++.|+..+.++.|...+.-+ +..++...+.+++ .+.|..++-.|+
T Consensus 70 ~L~~Ll~D~d~~VR~~AA~~L------------------p~~~L~~L~~D~d--~~VR~~aa~~l~-------------- 115 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDED--REVRITVADRLP-------------- 115 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSC--HHHHHHHHHHSC--------------
T ss_pred HHHHHHCCCCHHHHHHHHHHC------------------CHHHHHHHHCCCC--HHHHHHHHHCCC--------------
T ss_conf 999882698989999999974------------------8999999844997--468998874268--------------
Q ss_pred HHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6446999999521799999999677899999999862027615568641138247774320599978999999999
Q 000836 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1262)
Q Consensus 585 ~~~~~~~~~~~L~~~~~~~~~~~P~lR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sPeVRaa~v~aL 660 (1262)
...+..++. |+++.||.++.-.+ ....+..+++|+.++||++++-.+
T Consensus 116 ----~~~L~~Ll~-------D~d~~VR~~aa~~~------------------~~~~L~~L~~D~d~~VR~~aA~~~ 162 (233)
T d1lrva_ 116 ----LEQLEQMAA-------DRDYLVRAYVVQRI------------------PPGRLFRFMRDEDRQVRKLVAKRL 162 (233)
T ss_dssp ----TGGGGGGTT-------CSSHHHHHHHHHHS------------------CGGGGGGTTTCSCHHHHHHHHHHS
T ss_pred ----HHHHHHHHC-------CCCHHHHHHHHHCC------------------CHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf ----899999855-------99878999998611------------------066899883489789999999845
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.31 Score=21.74 Aligned_cols=163 Identities=6% Similarity=-0.037 Sum_probs=77.1
Q ss_pred EEEEEECCCCCEEEEEEC-C---CCEEEEECCCCCEEEEEECCCCCCCCE----EEEEEEECCCCCEE--EEEE-CCC--
Q ss_conf 289999379999999968-9---939999889992888940799999985----89998541899689--9993-798--
Q 000836 1038 TKTALLQPFSPIVVAADE-N---ERIKIWNYEEDTLLNSFDNHDFPDKGI----SKLCLVNELDVSLL--LVAS-CNG-- 1104 (1262)
Q Consensus 1038 V~sl~fspdg~~Lvsgs~-d---g~I~IWD~~tg~~l~~l~~h~~~~~~I----tsL~fsn~~dg~lL--vTgS-~DG-- 1104 (1262)
+..+.|.+++..++.... + ..|.++|..++++...+..... +.| ....|+ +++..+ +..+ .+|
T Consensus 257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~--~wv~~~~~~p~~~--~dg~~~~fi~~se~~g~~ 332 (465)
T d1xfda1 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE--AWLHRQNEEPVFS--KDGRKFFFIRAIPQGGRG 332 (465)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS--SCCCCCCCCCEEC--TTSCSEEEEEEECCSSSS
T ss_pred EEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCC--CEEECCCCCEEEC--CCCCEEEEEEEEEECCCC
T ss_conf 456687579938999974100301379970799927877897278--5173567860574--689805777765431667
Q ss_pred EEEEEECCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEC-C----CEEEEEECCCCCEEEEEEC--
Q ss_conf 29999867878--8522774001024789950014204887079998999968-9----8099996888851357644--
Q 000836 1105 NIRIWKDYDQK--DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V----SSIMLWDLEKEQQMVNPIP-- 1175 (1262)
Q Consensus 1105 ~IrIWD~~~~~--g~~~lvsa~~~l~~h~~~V~sv~l~i~wsp~~~~Llssg~-D----g~IrIWDlrs~~~~i~ti~-- 1175 (1262)
.+......... ..... .+.+....-.|.. .+.|.+.++.++-.+. + ..+.--++.... ....+.
T Consensus 333 ~ly~~~~~~~~~~~~~~~---~~~LT~G~w~V~~---i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~-~~~~lt~~ 405 (465)
T d1xfda1 333 KFYHITVSSSQPNSSNDN---IQSITSGDWDVTK---ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCD 405 (465)
T ss_dssp CEEEEEEECSSCCSSSCC---CCBSCCSSSCEEE---EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSSTT
T ss_pred CEEEEEECCCCCCCCCCE---EEEECCCCCEEEE---EEEECCCCCEEEEEEECCCCCCEEEEEEECCCCC-CCEEECCC
T ss_conf 168998315666678862---6982269921997---7898389999999996899982689999778998-60553144
Q ss_pred -CCCCCCEEEEEEECCCCCEEEEEECC---CCEEEEECCCCC
Q ss_conf -99999826999874999999999789---919999788998
Q 000836 1176 -SSSDCSISALTASQVHGGQLAAGFVD---GSVRLYDVRTPD 1213 (1262)
Q Consensus 1176 -~hs~s~ItsLs~~s~~g~lLasGs~D---GsVrIWDlrs~~ 1213 (1262)
..... ..++ .+++++.+++..+.. -.+.+++...++
T Consensus 406 ~~~~~~-~~~~-~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~ 445 (465)
T d1xfda1 406 LVENCT-YFSA-SFSHSMDFFLLKCEGPGVPMVTVHNTTDKK 445 (465)
T ss_dssp SSSSCC-CCEE-EECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred CCCCCC-EEEE-EECCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 678898-7999-999999999998006999849999999997
|