Citrus Sinensis ID: 000837
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LXF4 | 1227 | Pentatricopeptide repeat- | yes | no | 0.926 | 0.952 | 0.487 | 0.0 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.730 | 0.841 | 0.230 | 5e-55 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.580 | 0.807 | 0.231 | 9e-49 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.373 | 0.758 | 0.265 | 9e-48 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.379 | 0.751 | 0.254 | 8e-47 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.384 | 0.753 | 0.251 | 2e-46 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.442 | 0.765 | 0.271 | 4e-46 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.750 | 0.851 | 0.214 | 6e-45 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.390 | 0.783 | 0.245 | 1e-44 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.481 | 0.624 | 0.242 | 2e-44 |
| >sp|Q9LXF4|PP384_ARATH Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1183 (48%), Positives = 804/1183 (67%), Gaps = 14/1183 (1%)
Query: 81 GIAKSGLSRSSHLLETEKDK-SYANASLKDLLLNISDVVPATARKFLRFLVLKPENVLEI 139
I ++ S S +LL K+K +SLKDLL ++SDVVP R+F RF LKPE+VLE+
Sbjct: 49 AIPRNYESSSFNLLSRSKEKRDLTGSSLKDLLFDLSDVVPNITRRFRRFPGLKPEDVLEL 108
Query: 140 LVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVEL 199
+GF E ++ G N KV+ LWEIF+WAS Y+GF+HLP++CE+MA MLIR GM+KEVEL
Sbjct: 109 SLGFESELQRGGIGNIKVQALWEIFRWASVQYQGFKHLPQACEIMASMLIREGMVKEVEL 168
Query: 200 LLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHL 259
LL+ MER G + + IF +LI YV D +AV++FD MR +GLVP SCY++ I+ L
Sbjct: 169 LLMEMERHGDTMVNEGIFCDLIGKYVDDFDSRKAVMLFDWMRRKGLVPLTSCYQILIDQL 228
Query: 260 VKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLE 319
V++ T A+R+C+D V L + DS V+ LLC D+K+QE+R L RK +A G
Sbjct: 229 VRVHRTESAYRICLDWVETRAELNHMNIDSIGKVIELLCLDQKVQEARVLARKLVALGCI 288
Query: 320 PSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQE 379
+S +++++ GY EK+DFEDLLSF E+K PDV GNRI+H+LC FGS+RA ++++E
Sbjct: 289 LNSSIYSKITIGYNEKQDFEDLLSFIGEVKYEPDVFVGNRILHSLCRRFGSERAYVYMEE 348
Query: 380 LEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGM 439
LEH GF+ DE+TFGILIGW C EG+++ A+++ SEI+S+G PDV++YN+++SG+F++G+
Sbjct: 349 LEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGL 408
Query: 440 SKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDP 499
+H ILDEM G+ SLST++I++ GYCKARQF+EAK +V++M GLIE S +EDP
Sbjct: 409 WQHTHCILDEMKENGMMLSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIEASKVEDP 468
Query: 500 LSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMI 559
LS+ F ++G +P AVRL+RDND FSK EFFD+LGNGLYL TDLD YE++++ +++ S++
Sbjct: 469 LSEAFSLVGFDPLAVRLKRDNDSTFSKAEFFDDLGNGLYLHTDLDAYEQRVNMVLDRSVL 528
Query: 560 PNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLE 619
P FNSLI G+L+ AL L+DEM RWGQ+LS F+ L++ LCASR+H++ LLE
Sbjct: 529 PEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLRVSISLLE 588
Query: 620 KMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKG 679
K PKLA +LD E+LN L+Q CKKG R K IF M+Q I+N +YT+L+ CKK
Sbjct: 589 KWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCKKE 648
Query: 680 FIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICY 739
+ DL W AQN WLP L DC L CL K L++E +QLFE + +S P +S+ C
Sbjct: 649 TLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERVFISYPLSQSEACR 708
Query: 740 IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK 799
IF+EKL V GFS AH++V+ L +GC ++Q Y+HLI+GLC EKK S AF +LD MLDK
Sbjct: 709 IFVEKLTVLGFSCIAHSVVKRLEGEGCIVEQEVYNHLIKGLCTEKKDSAAFAILDEMLDK 768
Query: 800 NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEA 859
P L + LIP+L R + A L E + H A I G + GK +A
Sbjct: 769 KHIPSLGSCLMLIPRLCRANKAGTAFNLAE------QIDSSYVHYALIKGLSLAGKMLDA 822
Query: 860 SKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRW 919
R MLS G+ +++YN++ QG+C+ NN KV E+L M+RK + S+ SYR VR
Sbjct: 823 ENQLRIMLSNGLSSYNKIYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSVKSYREYVRK 882
Query: 920 MCMEGGVPWALNLKE-LMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLP 978
MC+E A++LKE L+LG++ +II+N+L+F++ + N V +VL E+Q +LP
Sbjct: 883 MCLEPQSLSAISLKEFLLLGESNPGGVIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLP 942
Query: 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELS 1038
DE T+NFL++G+S D SSS Y++AM+SKG P+NRSLR+V S LC+ G++ K+L+L
Sbjct: 943 DETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKPNNRSLRAVTSSLCDNGDVKKALDLW 1002
Query: 1039 QEMRLKGL-VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCG 1097
Q M KG + S+VQ I E L+S+G++ +AE FL ++ ++ NYDN+IK+
Sbjct: 1003 QVMESKGWNLGSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMMAP--NYDNIIKKLSD 1060
Query: 1098 YGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC---NKLDPAMDLHAEMMARDLKPSMNT 1154
G LD AV LLN MLK S P SSSYDS+I+ N+LD AMD H EM+ L PS++T
Sbjct: 1061 RGNLDIAVHLLNTMLKNQSIPGSSSYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSIST 1120
Query: 1155 WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQ 1214
W LVHK C+ + E+ERL+ SMV LG++P+QEM+ +V++R+ +E N KASE+M+ MQ
Sbjct: 1121 WSGLVHKFCEACQVLESERLIKSMVGLGESPSQEMFKTVIDRFRVEKNTVKASEMMEMMQ 1180
Query: 1215 QSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLSGSGF 1257
+ GY DF THWSLISN+ +S +K +GFLSRLLSG+GF
Sbjct: 1181 KCGYEVDFETHWSLISNMSSSKEKKTTTAGEGFLSRLLSGNGF 1223
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 242/1048 (23%), Positives = 458/1048 (43%), Gaps = 126/1048 (12%)
Query: 216 IFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM--KVTHLAF---- 269
++ LI+ Y+ G ++ ++ +F M G P + + +VK V+ +F
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM 184
Query: 270 ---RVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFN 326
++C D+ +F+ ++ +LC + ++S L++K G P+ + +N
Sbjct: 185 LKRKICPDVA------------TFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYN 232
Query: 327 EVAYGYCEKKDFEDLLSFFTEMK---CTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS 383
V + YC+K F+ + MK DV N +IH LC + L ++++
Sbjct: 233 TVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKR 292
Query: 384 GFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHA 443
P+E+T+ LI EG + A +E+LS GL+P+ T+N+LI G EG K A
Sbjct: 293 MIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEA 352
Query: 444 KEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKG 503
++ M +G+TPS +Y +LL G CK +FD L++G
Sbjct: 353 LKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFD-----------------------LARG 389
Query: 504 FMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN-- 561
F + R++R N + ++ + + +GL + LDE L+++ +D + P+
Sbjct: 390 FYM--------RMKR-NGVCVGRIT-YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIV 439
Query: 562 -FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEK 620
+++LI G K A +V + R G + ++S L+ C +K + E
Sbjct: 440 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYN-CCRMGCLKEAIRIYEA 498
Query: 621 MPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGF 680
M + D + N+L+ + CK G V + ++ M G+ S+ L+ G
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG- 557
Query: 681 IKDLHAF--WDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDIC 738
+ L AF +D P SL++ LC L+E+ + + L + P +
Sbjct: 558 -EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS-LHAVPAAVDTVM 615
Query: 739 Y-IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKML-DSM 796
Y L +C +G + A +L E++Q+ D Y+ LI GLC++ K +A ++
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 797 LDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREI--SLKEQPLLLFSFHSAFISGFCVTG 854
N+ P + + +F+ G+ + + RE +L P ++ + +A I G+ G
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTT--NAMIDGYSRMG 733
Query: 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYR 914
K E+ + L +M +Q YN+L+ G+ + RK +S S YR
Sbjct: 734 KIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSK---------------RKDVSTSFLLYR 778
Query: 915 NLVRWMCMEGGVPWALNLKELMLGQNKSHNLII-------------------FNILVFHL 955
+++ + G +P L L+LG +S+ L I FN+L+
Sbjct: 779 SII----LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC 834
Query: 956 MSSGNI---FHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFN 1012
++G I F + +V+ L + D+ T + ++ +++ S+ + M +G +
Sbjct: 835 CANGEINWAFDLVKVMTSLG---ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891
Query: 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072
P +R +I+ LC VG++ + + +EM + ++ ++A+ L GK EA
Sbjct: 892 PESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLL 951
Query: 1073 LDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST-CN 1131
L ++ LVP ++ L+ C G + +A++L +M G + SY+ +I+ C
Sbjct: 952 LRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCA 1011
Query: 1132 KLDPAM--DLHAEMMARDLKPSMNTWHVLVHK-LCQEGRTTEAERLLISMVQLGDTPTQE 1188
K D A+ +L+ EM + T+ L+ L +E + A+ +L ++ G +
Sbjct: 1012 KGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILKDLLARGFITSMS 1071
Query: 1189 MYSSVVNRYSLENNLGKASELMQAMQQS 1216
+ NL A E ++A+Q +
Sbjct: 1072 LSQDS------HRNLKMAMEKLKALQSN 1093
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 189/817 (23%), Positives = 342/817 (41%), Gaps = 85/817 (10%)
Query: 217 FSNLIQGYVGVGDVERAVLVFDQMRGR-GLVPFLSCYRVFINHLVKMKVTHLAFRVCVDM 275
F LIQ YV V VLVF M + L+P + ++ LVK + LA + DM
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 276 VVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK 335
V + G+ P ++ V CE
Sbjct: 219 V--------------------------------------SVGIRPDVYIYTGVIRSLCEL 240
Query: 336 KDF---EDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITF 392
KD +++++ C +++ N +I LC A ++L +PD +T+
Sbjct: 241 KDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTY 300
Query: 393 GILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVN 452
L+ C+ L E+L +P +SL+ G+ K G + A ++ +V+
Sbjct: 301 CTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVD 360
Query: 453 RGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPS 512
G++P+L Y L+ CK R+F EA+++ M K GL
Sbjct: 361 FGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL---------------------- 398
Query: 513 AVRLRRDNDMGFSK-VEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHA 571
R ND+ +S ++ F G LDT L + ++ S+ P +NSLI
Sbjct: 399 -----RPNDVTYSILIDMFCRRGK---LDTALSFLGEMVDTGLKLSVYP-YNSLINGHCK 449
Query: 572 RGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQE 631
G++ AA + EM+ E ++ +++L+ G C S+ I L +M
Sbjct: 450 FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC-SKGKINKALRLYHEMTGKGIAPSIY 508
Query: 632 SLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIA 691
+ L+ + GL+RD K+F+ M + + +Y ++ C++G + F
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Query: 692 QNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYI-FLEKLCVTGF 750
+ +P + L+ LC E+ ++F L C ++ICY L C G
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 751 SSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVS 810
A ++ +E++Q+G +LD + Y LI G K K + F +L M D+ + P + S
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTS 687
Query: 811 LIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQG 870
+I +TG ++A + ++ + E + ++A I+G C G EA L M
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVS 747
Query: 871 MLLEDEVY----NMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGV 926
+ Y ++L +G + ++K EL +A+++ L+ + ++Y L+R C +G +
Sbjct: 748 SVPNQVTYGCFLDILTKGEVD---MQKAVELHNAILKGLLA-NTATYNMLIRGFCRQGRI 803
Query: 927 PWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFL 986
A L M+G S + I + ++ L ++ + + + E + PD V YN L
Sbjct: 804 EEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTL 863
Query: 987 IYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVIS 1023
I+G ++ + M+ +G P+N++ R+ S
Sbjct: 864 IHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTTTS 900
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 241/478 (50%), Gaps = 7/478 (1%)
Query: 752 SNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSL 811
S A + + ++++ G D + +S LI GLC E + S A +++D M++ P L +L
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNAL 183
Query: 812 IPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQ 869
+ L G++ AV L R + QP + + + C +G+ A +L R M +
Sbjct: 184 VNGLCLNGKVSDAVLLIDRMVETGFQPNEVT--YGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 870 GMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWA 929
+ L+ Y+++I G C+ +L L + M K I Y L+R C G
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301
Query: 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYG 989
L M+ + + +++ F+ L+ + G + + + E+ + + PD VTY LI G
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Query: 990 FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD 1049
F K + + + + MVSKG P+ R+ +I+ C+ + LEL ++M L+G+V D
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421
Query: 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLN 1109
++ N + +G GKL+ A+ ++V + + PD ++Y L+ C G +KA+++
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481
Query: 1110 IMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG 1166
+ K + Y+ II CN K+D A DL + + +KP + T+++++ LC++G
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Query: 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFST 1224
+EA+ L M + G +P Y+ ++ + E + K+++L++ +++ G+S D ST
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/492 (25%), Positives = 247/492 (50%), Gaps = 13/492 (2%)
Query: 738 CYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797
C+ KLC+ A + + ++++ G + + +S LI GLC E + S A +++D M+
Sbjct: 132 CFCRCRKLCL------AFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGK 855
+ P L +L+ L +G+ +A+ L + + QP + + ++ C +G+
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT--YGPVLNVMCKSGQ 243
Query: 856 AEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRN 915
A +L R M + + L+ Y+++I G C+ +L L + M K ++ +I +Y
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Query: 916 LVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE 975
L+ C G L M+ + + N++ F++L+ + G + + + E+
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 976 LLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSL 1035
+ PD +TY LI GF K + + + MVSKG +P+ R+ +I+ C+ + L
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 423
Query: 1036 ELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRF 1095
EL ++M L+G+V D++ N + +G GKL A+ ++V + + P+ + Y L+
Sbjct: 424 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Query: 1096 CGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSM 1152
C G +KA+++ + K + Y+ II CN K+D A DL + + +KP +
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGV 543
Query: 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212
T+++++ LC++G +EAE L M + G P Y+ ++ + + + K+ +L++
Sbjct: 544 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 603
Query: 1213 MQQSGYSPDFST 1224
+++ G+S D ST
Sbjct: 604 LKRCGFSVDAST 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 247/493 (50%), Gaps = 8/493 (1%)
Query: 752 SNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSL 811
S A + + ++++ G D + ++ L+ GLC E + S A +++D M++ P L +L
Sbjct: 140 SYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTL 199
Query: 812 IPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQ 869
+ L G++ AV L R + QP + + ++ C +G+ A +L R M +
Sbjct: 200 VNGLCLNGKVSDAVVLIDRMVETGFQPNEVT--YGPVLNVMCKSGQTALAMELLRKMEER 257
Query: 870 GMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWA 929
+ L+ Y+++I G C+ +L L + M K I +Y L+ C G
Sbjct: 258 NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG 317
Query: 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYG 989
L M+ + S N++ F++L+ + G + ++L E+ + + P+ +TYN LI G
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Query: 990 FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD 1049
F K + + + M+SKG +P + +I+ C+ + LEL +EM L+G++ +
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437
Query: 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLN 1109
++ N + +G GKL+ A+ ++V + + PD ++Y L+ C G L+KA+++
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG 497
Query: 1110 IMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG 1166
+ K + Y II CN K+D A DL + + +K +++++ +LC++
Sbjct: 498 KIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557
Query: 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHW 1226
++A+ L M + G P + Y+ ++ + +++ A+EL++ M+ SG+ D ST
Sbjct: 558 SLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVST-V 616
Query: 1227 SLISNLRNSNDKD 1239
++ N+ +S + D
Sbjct: 617 KMVINMLSSGELD 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 166/612 (27%), Positives = 276/612 (45%), Gaps = 53/612 (8%)
Query: 157 VETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEI 216
V T E+F W G+RH +V+ L G K ++ LL+ M+ EGI+ K + +
Sbjct: 91 VSTSMELFSWTGS-QNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKES-L 148
Query: 217 FSNLIQGYVGVGDVERAVLVFDQMRG-RGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDM 275
F ++++ Y G + + +MR P Y V + LV +A V DM
Sbjct: 149 FISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM 208
Query: 276 VVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK 335
+ T +F V++ C +I + +L+R G P+S+++ + + +
Sbjct: 209 LSRKIPPTLF---TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265
Query: 336 KDFEDLLSFFTE---MKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITF 392
+ L E M C PD N +I LC A V + GF PD+IT+
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITY 325
Query: 393 GILIGWTCREGNLRSA-----------LVFFSEIL---------------------SRGL 420
G L+ C+ G + +A +V F+ ++ S G+
Sbjct: 326 GYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGI 385
Query: 421 NPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKI 480
PDV TYNSLI G +KEG+ A E+L +M N+G P++ +Y IL+ G+CK + DEA
Sbjct: 386 VPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYN 445
Query: 481 MVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSK--VEFFDNLGNGLY 538
+++EM+ GL + + L F P AV + R+ K V F++L +GL
Sbjct: 446 VLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL- 504
Query: 539 LDTDLDEYERK---LSKIIEDSMIPN---FNSLIKMVHARGNLKAALLLVDEMVRWGQEL 592
++DE + L +I + ++ N +N+LI RG +K A LV+EMV G L
Sbjct: 505 --CEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562
Query: 593 SLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKI 652
+++L+KGLC + + L EKM + + S N+LI C+ G+V + +
Sbjct: 563 DEITYNSLIKGLCRA-GEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEF 621
Query: 653 FDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCH 712
M+ RG T + ++ +L+ LC+ G I+D + Q P +L+ LC
Sbjct: 622 QKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCK 681
Query: 713 KKLLKESLQLFE 724
+ ++ L +
Sbjct: 682 GGFVYDACLLLD 693
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 222/1035 (21%), Positives = 424/1035 (40%), Gaps = 88/1035 (8%)
Query: 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVL 235
H +C M L G L+E+ + M++ I+ + + + + G +++A
Sbjct: 116 HTTETCNYMLEALRVDGKLEEMAYVFDLMQKR-IIKRDTNTYLTIFKSLSVKGGLKQAPY 174
Query: 236 VFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVR 295
+MR G V Y I+ L+K + A V M++ G + ++ ++
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPS---LQTYSSLMV 231
Query: 296 LLCRDRKIQESRNLVRKAMAFGLEPSSLVFN---EVAYGYCEKKDFEDLLSFFTEMKCTP 352
L + R I L+++ GL+P+ F V + + ++L + C P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291
Query: 353 DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFF 412
DV+ +I LC+ A ++++ +PD +T+ L+ +L S F+
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFW 351
Query: 413 SEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472
SE+ G PDV T+ L+ + K G A + LD M ++GI P+L TY L+ G +
Sbjct: 352 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRV 411
Query: 473 RQFDEA-------------------KIMVSEMAKSG--LIELSSLEDPLSKGFM--ILGL 509
+ D+A + + KSG + L + E +KG I+
Sbjct: 412 HRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 471
Query: 510 NPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMV 569
N S L + +K F Y K ++ DS+ +N ++K
Sbjct: 472 NASLYSLAKAGRDREAKQIF----------------YGLKDIGLVPDSV--TYNMMMKCY 513
Query: 570 HARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLD 629
G + A+ L+ EM+ G E + V ++L+ L + + + +M ++ K
Sbjct: 514 SKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKA-DRVDEAWKMFMRMKEMKLKPT 572
Query: 630 QESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFI----KDLH 685
+ N L+ K G +++ ++F+GM+Q+G ++ TL LCK + K L
Sbjct: 573 VVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLF 632
Query: 686 AFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKL 745
D+ +P + +++ L +KE++ F M + Y L
Sbjct: 633 KMMDMG----CVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM--------KKLVYPDFVTL 680
Query: 746 CVTGFSSNAHALVEELLQQGCNL-----DQMA---YSHLIRGLCKEKKFSVAFKMLDSML 797
C +L+E+ + N DQ A + LI + E A + ++
Sbjct: 681 CTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLV 740
Query: 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREI------SLKEQPLLLFSFHSAFISGFC 851
+ C D L+P + + + R + L QP L ++ I G
Sbjct: 741 ANGI--CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKL--PTYNLLIGGLL 796
Query: 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSIS 911
E A +F + S G + + YN L+ + ++ + ++ EL M +
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTI 856
Query: 912 SYRNLVRWMCMEGGVPWALNL-KELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDE 970
++ ++ + G V AL+L +LM ++ S + L+ L SG ++ K++ +
Sbjct: 857 THNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEG 916
Query: 971 LQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGE 1030
+ + P+ YN LI GF K + ++ MV +G P ++ ++ CLC VG
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 1031 LGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQI-VDKDLVPDTINYD 1089
+ + L +E++ GL D + N I GL +L+EA +++ + + PD Y+
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 1090 NLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII---STCNKLDPAMDLHAEMMAR 1146
+LI G +++A + N + + G PN +++++I S K + A ++ M+
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTG 1096
Query: 1147 DLKPSMNTWHVLVHK 1161
P+ T+ L ++
Sbjct: 1097 GFSPNTGTYEQLPNR 1111
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/514 (24%), Positives = 244/514 (47%), Gaps = 21/514 (4%)
Query: 726 MLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKK 785
+L++C C RS + A A++ ++++ G D + S L+ G C K+
Sbjct: 120 ILINCFCRRSQLPL--------------ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 165
Query: 786 FSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVAL--REISLKEQPLLLFSFH 843
S A ++D M P +LI LF + +AVAL R ++ QP L F++
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDL-FTYG 224
Query: 844 SAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIR 903
+ ++G C G + A L + M + + +Y +I C N+ L + M
Sbjct: 225 TV-VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283
Query: 904 KRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFH 963
K + ++ +Y +L+R +C G A L M+ + + N++ F+ L+ + G +
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 343
Query: 964 VKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVIS 1023
+++ DE+ + + PD TY+ LI GF H + +K+ M+SK P+ + ++I
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403
Query: 1024 CLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP 1083
C+ + + +EL +EM +GLV +++ N + +GL G A+ ++V + P
Sbjct: 404 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 463
Query: 1084 DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS---TCNKLDPAMDLH 1140
D I Y L+ C YG+L+KA+ + + K P+ +Y+ +I K++ DL
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523
Query: 1141 AEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLE 1200
+ + +KP++ + ++ C++G EA+ L M + G P Y++++ +
Sbjct: 524 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRD 583
Query: 1201 NNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234
+ ++EL++ M+ G+ D ST +I+ L +
Sbjct: 584 GDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 164/677 (24%), Positives = 301/677 (44%), Gaps = 69/677 (10%)
Query: 574 NLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESL 633
N+ AL L + M+ G + L+ GLC + ++ LL +M L LD +
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIK-RLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 634 NLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQN 693
+LLI K K + M+ G+ I+ Y + + K+G ++ A +D
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 694 RKWLPGLEDCKSLVECLCHKKLLKESLQLFECM----LVSCPCLRSDICYIFLEKLCVTG 749
+P + SL+E C +K +++ +L M +V P + ++ +C +G
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV----VKGMCSSG 431
Query: 750 FSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSV 809
A+ +V+E++ GC + + Y+ LI+ + +F A ++L M ++ +AP +
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYN 491
Query: 810 SLIPQLFRTGRLEKA----VALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRD 865
SLI L + R+++A V + E LK + AFISG+ + A K ++
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFT----YGAFISGYIEASEFASADKYVKE 547
Query: 866 MLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGG 925
M G+L + LI +C+ KV E SA YR++V
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKG---KVIEACSA------------YRSMV-------- 584
Query: 926 VPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNF 985
+ +LG K+ + +L+ L + + + + E++ + PD +Y
Sbjct: 585 -------DQGILGDAKT-----YTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632
Query: 986 LIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKG 1045
LI GFSK ++ + MV +G P+ ++ C GE+ K+ EL EM +KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAV 1105
L +++ I +G G L EA D++ K LVPD+ Y L+ C +++A+
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752
Query: 1106 DLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDL--------KPSMNTWHV 1157
+ KKG +++ ++++I+ K +L E++ R + KP+ T+++
Sbjct: 753 TIFGTN-KKGCASSTAPFNALINWVFKFGKT-ELKTEVLNRLMDGSFDRFGKPNDVTYNI 810
Query: 1158 LVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ-- 1215
++ LC+EG A+ L M PT Y+S++N Y + +G+ +E+ +
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGY---DKMGRRAEMFPVFDEAI 867
Query: 1216 -SGYSPDFSTHWSLISN 1231
+G PD +S+I N
Sbjct: 868 AAGIEPD-HIMYSVIIN 883
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | ||||||
| 225452865 | 1273 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.972 | 0.587 | 0.0 | |
| 296082940 | 1256 | unnamed protein product [Vitis vinifera] | 0.972 | 0.976 | 0.590 | 0.0 | |
| 255584797 | 1204 | pentatricopeptide repeat-containing prot | 0.907 | 0.950 | 0.603 | 0.0 | |
| 224141013 | 1158 | predicted protein [Populus trichocarpa] | 0.904 | 0.986 | 0.600 | 0.0 | |
| 356569756 | 1186 | PREDICTED: pentatricopeptide repeat-cont | 0.905 | 0.963 | 0.528 | 0.0 | |
| 449443988 | 1246 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.953 | 0.524 | 0.0 | |
| 449510872 | 1225 | PREDICTED: pentatricopeptide repeat-cont | 0.924 | 0.952 | 0.518 | 0.0 | |
| 15242266 | 1227 | pentatricopeptide repeat-containing prot | 0.926 | 0.952 | 0.487 | 0.0 | |
| 297807549 | 1223 | pentatricopeptide repeat-containing prot | 0.897 | 0.926 | 0.493 | 0.0 | |
| 357120628 | 1278 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.906 | 0.356 | 0.0 |
| >gi|225452865|ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1478 bits (3826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/1252 (58%), Positives = 941/1252 (75%), Gaps = 14/1252 (1%)
Query: 17 SQILSTLRNPRKLHK--IKQARSFLS------TEQHIFTSDIVLKNRPKSSLSSSEDQEM 68
S++L + N LHK IKQ S S T+ F S + + SS SS ++ +
Sbjct: 16 SRMLQSFFNAH-LHKPHIKQVGSLFSHLIVSTTKSRFFISSLADHSSQSSSSSSVNEEAI 74
Query: 69 ETHIDLSSVSFDGIAKSGLSRSSHLLETEKDKSYANASLKDLLLNISDVVPATARKFLRF 128
+TH+DLS++ I KS + R SHL ET K + +SLK+ LL ISD+ P T RKF R
Sbjct: 75 KTHVDLSAIDCSRIVKSVILRCSHLWETNSVKPFGYSSLKEHLLGISDISPETTRKFRRV 134
Query: 129 LVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALML 188
LKPE+VLEIL+GF F E + KVE+LW IFKW++ KGF+HLP+SCE+MA ML
Sbjct: 135 SELKPEDVLEILLGFQFHRENPQIESGKVESLWGIFKWSNDQNKGFKHLPQSCEIMASML 194
Query: 189 IRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF 248
IRVG+L+EVE LL ME G+LL +EIFSNL++GYV V + ERA+ V+DQMRGRGLVP
Sbjct: 195 IRVGLLREVESLLAEMESRGVLLDGHEIFSNLVEGYVCVSESERAISVYDQMRGRGLVPS 254
Query: 249 LSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRN 308
LSCY V I+HLV+ L FRV +DMV MG +L++ + + +V+RLLCRD KIQE R+
Sbjct: 255 LSCYNVLIDHLVQTNEKQLVFRVYLDMVEMGFDLSNADMANLENVIRLLCRDGKIQEGRS 314
Query: 309 LVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIF 368
LV+K M GL PSSL+ +E+A GYCEKKDFED LSFF EM C P V+ GN+I+++LC F
Sbjct: 315 LVKKVMGLGLNPSSLILDEIANGYCEKKDFEDALSFFVEMNCAPSVVVGNKIMYSLCRDF 374
Query: 369 GSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYN 428
G++RADLF+QELEH GF PDEITFGILI W CREG L++A ++ SEILSR L PD+ +YN
Sbjct: 375 GTERADLFLQELEHLGFSPDEITFGILISWCCREGKLKNAFIYLSEILSRDLKPDICSYN 434
Query: 429 SLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKS 488
++ISG+FKEG+ KHA++IL EMV+ GI P L T+R+LLAGYCKAR+F EAK V EM
Sbjct: 435 AIISGVFKEGLWKHAQDILHEMVDMGIKPDLLTFRVLLAGYCKARRFGEAKATVGEMVNY 494
Query: 489 GLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYER 548
GLI+L S EDPLSK FM+L L+P A+R++RDND+GFSK EFFDNLGNGLYL+TD+DEYE+
Sbjct: 495 GLIQLCSQEDPLSKAFMVLELDPLAIRVKRDNDVGFSKTEFFDNLGNGLYLETDVDEYEK 554
Query: 549 KLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASR 608
K++ I+EDSM+P+FN LI A GN+K A+++VDEMVRWGQELSLS FSAL++GLCAS
Sbjct: 555 KVTGILEDSMVPDFNLLITRACAGGNVKTAMMVVDEMVRWGQELSLSAFSALLEGLCASH 614
Query: 609 SHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESY 668
IKA TGLLEKMPKL N++D+E+LNLL+Q CKKG + GK I +GMLQR L++++E+Y
Sbjct: 615 FSIKAVTGLLEKMPKLVNQVDEETLNLLVQTHCKKGFIGKGKIILNGMLQRHLSVKSETY 674
Query: 669 TTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLV 728
LL LCKKG + + WD+A+ KWL L+DCK LV CLC +K LKE+L+L E ML
Sbjct: 675 VALLAGLCKKGNSRTIRCCWDLARRDKWLLELKDCKVLVGCLCQQKFLKEALELLESMLA 734
Query: 729 SCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788
+ P LR D+C +FLEKLCV GF++ AHALV+E LQQGC LD A+SHLI G CKEK+FS
Sbjct: 735 TYPHLRLDVCNMFLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSE 794
Query: 789 AFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFIS 848
AF + +SM KN+ PCLD S+ LIPQL R R+EKA+AL+++SL+EQ + FS HSA ++
Sbjct: 795 AFTIFESMQAKNLVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSFSVHSALMN 854
Query: 849 GFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSL 908
GFC TG+ EA+ LF+DM S G+L + E+ NML+ G+C+AN++RKV EL+ MIRK L
Sbjct: 855 GFCKTGRIGEAAILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGVMIRKDLGF 914
Query: 909 SISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVL 968
SIS YRN+VR +CM G V L +KELML +N +LI++NIL++HL +GN VK +L
Sbjct: 915 SISVYRNVVRLLCMNGMVLPLLRMKELMLRENNFPHLIVYNILIYHLFQTGNSLLVKVIL 974
Query: 969 DELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEV 1028
EL + LL DEVTYNFL+YGF + KDV +S Y+ AM+SK PS+R+LR+VISCLC+
Sbjct: 975 GELHKKGLLFDEVTYNFLVYGFLQSKDVPTSVQYLTAMISKELRPSSRNLRAVISCLCDS 1034
Query: 1029 GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINY 1088
G L K+LELS+EM L+G +H SI QNAI LLS GKL+EAE FLD++V+K L+PD INY
Sbjct: 1035 GMLRKALELSREMELRGWIHGSIAQNAIVGCLLSHGKLKEAESFLDRMVEKGLIPDNINY 1094
Query: 1089 DNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS---TCNKLDPAMDLHAEMMA 1145
++LI++FC +GRL+KAV+LLNIMLKKG+ PN SSYDS+I T N+LD AMD H EM+
Sbjct: 1095 ESLIRQFCWHGRLNKAVELLNIMLKKGNLPNCSSYDSVIQGFCTVNRLDEAMDFHTEMLD 1154
Query: 1146 RDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGK 1205
R L+PS+ W L HK CQ+GRT EAE LL+SMVQ+G+TPT+EMY+S++NR ENNL K
Sbjct: 1155 RKLRPSIKAWDALAHKFCQDGRTAEAESLLVSMVQMGETPTREMYTSLINRLRSENNLSK 1214
Query: 1206 ASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLSGSGF 1257
ASEL+QAMQ SG++PDF THWSLISNL S DKD+ ++GFLSRLLS SGF
Sbjct: 1215 ASELLQAMQLSGHAPDFGTHWSLISNLNRSKDKDS--ANRGFLSRLLSESGF 1264
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082940|emb|CBI22241.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1478 bits (3826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/1240 (59%), Positives = 935/1240 (75%), Gaps = 13/1240 (1%)
Query: 29 LHK--IKQARSFLS------TEQHIFTSDIVLKNRPKSSLSSSEDQEMETHIDLSSVSFD 80
LHK IKQ S S T+ F S + + SS SS ++ ++TH+DLS++
Sbjct: 10 LHKPHIKQVGSLFSHLIVSTTKSRFFISSLADHSSQSSSSSSVNEEAIKTHVDLSAIDCS 69
Query: 81 GIAKSGLSRSSHLLETEKDKSYANASLKDLLLNISDVVPATARKFLRFLVLKPENVLEIL 140
I KS + R SHL ET K + +SLK+ LL ISD+ P T RKF R LKPE+VLEIL
Sbjct: 70 RIVKSVILRCSHLWETNSVKPFGYSSLKEHLLGISDISPETTRKFRRVSELKPEDVLEIL 129
Query: 141 VGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELL 200
+GF F E + KVE+LW IFKW++ KGF+HLP+SCE+MA MLIRVG+L+EVE L
Sbjct: 130 LGFQFHRENPQIESGKVESLWGIFKWSNDQNKGFKHLPQSCEIMASMLIRVGLLREVESL 189
Query: 201 LLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260
L ME G+LL +EIFSNL++GYV V + ERA+ V+DQMRGRGLVP LSCY V I+HLV
Sbjct: 190 LAEMESRGVLLDGHEIFSNLVEGYVCVSESERAISVYDQMRGRGLVPSLSCYNVLIDHLV 249
Query: 261 KMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEP 320
+ L FRV +DMV MG +L++ + + +V+RLLCRD KIQE R+LV+K M GL P
Sbjct: 250 QTNEKQLVFRVYLDMVEMGFDLSNADMANLENVIRLLCRDGKIQEGRSLVKKVMGLGLNP 309
Query: 321 SSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQEL 380
SSL+ +E+A GYCEKKDFED LSFF EM C P V+ GN+I+++LC FG++RADLF+QEL
Sbjct: 310 SSLILDEIANGYCEKKDFEDALSFFVEMNCAPSVVVGNKIMYSLCRDFGTERADLFLQEL 369
Query: 381 EHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMS 440
EH GF PDEITFGILI W CREG L++A ++ SEILSR L PD+ +YN++ISG+FKEG+
Sbjct: 370 EHLGFSPDEITFGILISWCCREGKLKNAFIYLSEILSRDLKPDICSYNAIISGVFKEGLW 429
Query: 441 KHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPL 500
KHA++IL EMV+ GI P L T+R+LLAGYCKAR+F EAK V EM GLI+L S EDPL
Sbjct: 430 KHAQDILHEMVDMGIKPDLLTFRVLLAGYCKARRFGEAKATVGEMVNYGLIQLCSQEDPL 489
Query: 501 SKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIP 560
SK FM+L L+P A+R++RDND+GFSK EFFDNLGNGLYL+TD+DEYE+K++ I+EDSM+P
Sbjct: 490 SKAFMVLELDPLAIRVKRDNDVGFSKTEFFDNLGNGLYLETDVDEYEKKVTGILEDSMVP 549
Query: 561 NFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEK 620
+FN LI A GN+K A+++VDEMVRWGQELSLS FSAL++GLCAS IKA TGLLEK
Sbjct: 550 DFNLLITRACAGGNVKTAMMVVDEMVRWGQELSLSAFSALLEGLCASHFSIKAVTGLLEK 609
Query: 621 MPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGF 680
MPKL N++D+E+LNLL+Q CKKG + GK I +GMLQR L++++E+Y LL LCKKG
Sbjct: 610 MPKLVNQVDEETLNLLVQTHCKKGFIGKGKIILNGMLQRHLSVKSETYVALLAGLCKKGN 669
Query: 681 IKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYI 740
+ + WD+A+ KWL L+DCK LV CLC +K LKE+L+L E ML + P LR D+C +
Sbjct: 670 SRTIRCCWDLARRDKWLLELKDCKVLVGCLCQQKFLKEALELLESMLATYPHLRLDVCNM 729
Query: 741 FLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN 800
FLEKLCV GF++ AHALV+E LQQGC LD A+SHLI G CKEK+FS AF + +SM KN
Sbjct: 730 FLEKLCVVGFTTIAHALVDEFLQQGCILDHTAHSHLISGFCKEKRFSEAFTIFESMQAKN 789
Query: 801 MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEAS 860
+ PCLD S+ LIPQL R R+EKA+AL+++SL+EQ + FS HSA ++GFC TG+ EA+
Sbjct: 790 LVPCLDASILLIPQLCRANRVEKAIALKDLSLREQSIDSFSVHSALMNGFCKTGRIGEAA 849
Query: 861 KLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWM 920
LF+DM S G+L + E+ NML+ G+C+AN++RKV EL+ MIRK L SIS YRN+VR +
Sbjct: 850 ILFQDMFSNGLLPDIEICNMLVFGYCQANSVRKVTELIGVMIRKDLGFSISVYRNVVRLL 909
Query: 921 CMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE 980
CM G V L +KELML +N +LI++NIL++HL +GN VK +L EL + LL DE
Sbjct: 910 CMNGMVLPLLRMKELMLRENNFPHLIVYNILIYHLFQTGNSLLVKVILGELHKKGLLFDE 969
Query: 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQE 1040
VTYNFL+YGF + KDV +S Y+ AM+SK PS+R+LR+VISCLC+ G L K+LELS+E
Sbjct: 970 VTYNFLVYGFLQSKDVPTSVQYLTAMISKELRPSSRNLRAVISCLCDSGMLRKALELSRE 1029
Query: 1041 MRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGR 1100
M L+G +H SI QNAI LLS GKL+EAE FLD++V+K L+PD INY++LI++FC +GR
Sbjct: 1030 MELRGWIHGSIAQNAIVGCLLSHGKLKEAESFLDRMVEKGLIPDNINYESLIRQFCWHGR 1089
Query: 1101 LDKAVDLLNIMLKKGSTPNSSSYDSIIS---TCNKLDPAMDLHAEMMARDLKPSMNTWHV 1157
L+KAV+LLNIMLKKG+ PN SSYDS+I T N+LD AMD H EM+ R L+PS+ W
Sbjct: 1090 LNKAVELLNIMLKKGNLPNCSSYDSVIQGFCTVNRLDEAMDFHTEMLDRKLRPSIKAWDA 1149
Query: 1158 LVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217
L HK CQ+GRT EAE LL+SMVQ+G+TPT+EMY+S++NR ENNL KASEL+QAMQ SG
Sbjct: 1150 LAHKFCQDGRTAEAESLLVSMVQMGETPTREMYTSLINRLRSENNLSKASELLQAMQLSG 1209
Query: 1218 YSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLSGSGF 1257
++PDF THWSLISNL S DKD+ ++GFLSRLLS SGF
Sbjct: 1210 HAPDFGTHWSLISNLNRSKDKDS--ANRGFLSRLLSESGF 1247
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584797|ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527079|gb|EEF29261.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1438 bits (3723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1154 (60%), Positives = 896/1154 (77%), Gaps = 9/1154 (0%)
Query: 113 NISDVVPATARKFLRFLVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYK 172
+ISDV+P R+F R L L+PE+VLEIL+GF F+CE+V ++ KVE+LW IFKW S K
Sbjct: 40 DISDVIPDLTRRFSRILRLRPEDVLEILLGFQFQCEQVAIKSSKVESLWGIFKWVSDQDK 99
Query: 173 GFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVER 232
GF+HLP+S EVMAL+L R GM +EV+LLLLAMER+GI L +NEIFS LI+ YV D ER
Sbjct: 100 GFKHLPKSFEVMALLLTRCGMFREVQLLLLAMERQGISLDNNEIFSKLIERYVSSCDSER 159
Query: 233 AVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD 292
AVL++D+M+ + LVP L CY IN LV+M+ T L FR+C+DMV NL+ E S
Sbjct: 160 AVLMYDRMQEQNLVPSLFCYHGLINLLVRMRSTQLVFRICLDMVEHEINLSHREITSIEK 219
Query: 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTP 352
VVRLLC D +QE+RN++RK MA G EPSS + NE+A GY KKDFEDLLSFF +MK +P
Sbjct: 220 VVRLLCEDEMVQEARNIMRKVMALGFEPSSTLINEIASGYFVKKDFEDLLSFFVQMKRSP 279
Query: 353 DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFF 412
++ GN+II +CSI+G +RA+LF ELE GFRPDE TFG+L+GW C E NLRSA ++
Sbjct: 280 NLWVGNKIICGICSIYGVERANLFRLELEDLGFRPDETTFGVLLGWCCIEENLRSAFIYL 339
Query: 413 SEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472
SE+LSRGL P + +Y + I +F+EGM KHA++ILDEMVN G+TP+LS +R LLAGYCKA
Sbjct: 340 SEMLSRGLTPSIWSYIAFIGALFREGMWKHARDILDEMVNMGVTPNLSFFRTLLAGYCKA 399
Query: 473 RQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDN 532
RQFDE K+MV EM K GL++ SSLE+PLS+ FM+LG +P +VRL+RDN++GFSK EFFDN
Sbjct: 400 RQFDEVKMMVHEMLKCGLVKSSSLENPLSEAFMVLGFSPFSVRLKRDNNVGFSKTEFFDN 459
Query: 533 LGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQEL 592
+GNGLYLDT++DEYE+K+S I++DSM+P+FN LI+ +GN KAALLL+DEM RWGQEL
Sbjct: 460 IGNGLYLDTNIDEYEKKVSGILKDSMLPDFNLLIREGCDQGNFKAALLLIDEMFRWGQEL 519
Query: 593 SLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKI 652
SLSV +ALV+GLCASRSHI+AC L+EKMPKLAN+LD E LNLL+QACCK GL+ G+ I
Sbjct: 520 SLSVLAALVRGLCASRSHIRACIHLIEKMPKLANQLDDEVLNLLVQACCKSGLMYHGRLI 579
Query: 653 FDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCH 712
F ML + + IEN +YT L++ LCK+G ++ + WDIAQN KWLP L+DCKSLV CLC+
Sbjct: 580 FHQMLLKDVIIENGTYTALIVGLCKRGDLQAVRDCWDIAQNSKWLPELKDCKSLVGCLCY 639
Query: 713 KKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMA 772
+++K ++L E M+V P LR++I ++FLE+L +TGF+S AH LV+ELLQQGC D +
Sbjct: 640 HRMVKGVIELLESMMVFYPHLRAEIFHMFLEELSITGFTSIAHKLVDELLQQGCVFDNVV 699
Query: 773 YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISL 832
YS+L+RGLCKE+K+ A M +L +N+ PCLDVSV LIPQL + RL+ A+ALR+ISL
Sbjct: 700 YSYLLRGLCKERKYIAASTMAGEVLARNLVPCLDVSVILIPQLCKADRLDIAIALRDISL 759
Query: 833 KEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLR 892
+EQ + S A + GFC TGK EA+ + ++ML +G+L + E+YNML QG+C+ANN +
Sbjct: 760 REQSVSQLSVDCALVKGFCKTGKIGEAANMLQNMLLKGLLPDAEIYNMLFQGYCQANNWK 819
Query: 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILV 952
KVRELLS +IRK LS S+SSY+NL R MCM G AL+LK LML ++ +L+I+NIL+
Sbjct: 820 KVRELLSVLIRKFLSPSVSSYQNLARLMCMHGSFTSALSLKVLMLENSRYDSLVIYNILI 879
Query: 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFN 1012
FHL+S+GN HV RVLDELQE LL +EVTYNFL+YGFSK KDV+S +Y++ M+SKGF
Sbjct: 880 FHLLSAGNCLHVVRVLDELQEKGLLLNEVTYNFLVYGFSKCKDVASVVHYMSTMISKGFK 939
Query: 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072
P+NRS+R+ ++C+C++G+L + LELSQEM +G +H S VQNAI E LS KLQEAE+F
Sbjct: 940 PNNRSIRTAVTCMCDLGQLSEVLELSQEMEKRGWIHGSFVQNAIVESFLSHDKLQEAEYF 999
Query: 1073 LDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS---T 1129
LD++ D L+PDTINYDNLIKRFC GRL+KAVDLLNIML+KG+TP+S+SYD II
Sbjct: 1000 LDRMADNGLIPDTINYDNLIKRFCFCGRLNKAVDLLNIMLRKGNTPSSASYDCIIQGLCI 1059
Query: 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEM 1189
N+L+ AMD H EM+ R+L+PSM TW+++VH LCQ GRT EAE LLISM QLG+TP +M
Sbjct: 1060 WNQLNEAMDFHTEMLDRELRPSMKTWNMIVHNLCQLGRTAEAEGLLISMAQLGETPPGKM 1119
Query: 1190 YSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNR------N 1243
YS+V+NRY ENN KAS+LMQ MQ++GY PDF THWSLISNL+ DKDNN+ +
Sbjct: 1120 YSTVINRYRFENNPRKASQLMQMMQRNGYEPDFDTHWSLISNLQKFKDKDNNQEERNNNS 1179
Query: 1244 SQGFLSRLLSGSGF 1257
SQGFL+RLLSGSGF
Sbjct: 1180 SQGFLARLLSGSGF 1193
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141013|ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|222866871|gb|EEF04002.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1150 (60%), Positives = 895/1150 (77%), Gaps = 8/1150 (0%)
Query: 111 LLNISDVVPATARKFLRFLVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKL 170
LL+ISDV+P R+FLR L LKPE+VLE+L+GF FECE+V ++ KVE+LWEIFK A++
Sbjct: 3 LLDISDVIPHVTRRFLRVLRLKPEDVLEMLLGFQFECERVAVKSTKVESLWEIFKCANEQ 62
Query: 171 YKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDV 230
KGFRH P+SCEVMA +L+R GM +E +LLLLAMER+GI + S++IF +LI+GYVGVGD+
Sbjct: 63 DKGFRHFPKSCEVMASILVRHGMFREAQLLLLAMERQGISMDSSKIFVSLIEGYVGVGDL 122
Query: 231 ERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSF 290
ERAVLV+DQMR R LVP L C R ++ V+MK T LAFRV +D+V +G ++++ E SF
Sbjct: 123 ERAVLVYDQMRDRDLVPSLLCCRALVDLSVRMKRTQLAFRVSLDLVELGISVSEGENASF 182
Query: 291 HDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKC 350
+VVRLLCRD I+E+RN +RK MA G EPSSLV NE+A GYCE+ DFED + F EMKC
Sbjct: 183 ENVVRLLCRDGMIREARNFIRKLMALGFEPSSLVLNEIALGYCEQ-DFEDSVRCFAEMKC 241
Query: 351 TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALV 410
+P+VL GN+I+ +LC+ FG +RA+LF +LEH GF PDE+TFGILI W CRE L A
Sbjct: 242 SPNVLTGNKILFSLCTGFGVERANLFRLKLEHLGFMPDEVTFGILICWCCRERKLSGAFN 301
Query: 411 FFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYC 470
+ SE+LSRGL P++ Y++LIS +FKEGM +HA++ILDEMV+ G P LST++ILLAGYC
Sbjct: 302 YLSELLSRGLKPNIWCYHALISALFKEGMWEHAQDILDEMVDMGTAPVLSTFKILLAGYC 361
Query: 471 KARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFF 530
+AR+FDE K+++ EM GLIE S+LEDPLSK FM+L L +VRL+RDND+ FSK EFF
Sbjct: 362 RARRFDEVKVVIHEMVNRGLIESSALEDPLSKAFMVLELKTLSVRLKRDNDVEFSKTEFF 421
Query: 531 DNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQ 590
DNLGNGLYLDTDLDEY+++++ I+EDSM+P+F+ L++ + GN K A L EM RWGQ
Sbjct: 422 DNLGNGLYLDTDLDEYDKRVAGILEDSMVPDFDFLVRKECSNGNFKVAYSLTGEMARWGQ 481
Query: 591 ELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGK 650
ELSLSV SAL+KGLC RS+IK C+ LLEKMPKL N+LDQE LNLL+QA CK GL G
Sbjct: 482 ELSLSVVSALLKGLCTPRSYIKLCSSLLEKMPKLVNQLDQEVLNLLVQAYCKIGLTHKGW 541
Query: 651 KIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECL 710
IF+ MLQR LTI +E++T L+ LCKK +++LH WD A N KWLPGL DC S+VECL
Sbjct: 542 LIFNQMLQRNLTINSETFTALIKGLCKKENLRNLHDCWDFALNGKWLPGLVDCISVVECL 601
Query: 711 CHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQ 770
CH +LKE L+L E MLV P R + +IFLEKL +TGFSS AH VEELLQ GC LDQ
Sbjct: 602 CHCGMLKEVLELLERMLVLNPESRLKVLHIFLEKLSLTGFSSIAHLFVEELLQHGCALDQ 661
Query: 771 MAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREI 830
+AYSHLI+GLCKE+K+ VAF +LD ML + M PCLDVS+ LIPQL + +L+ A+ L E
Sbjct: 662 IAYSHLIKGLCKEQKYKVAFAVLDIMLARKMVPCLDVSLILIPQLCKADKLQTAIELMEN 721
Query: 831 SLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANN 890
L+ + +FHS F FCVTGKA EA+ +F++MLS+G+L + ++YNML+Q C N
Sbjct: 722 VLRVRT----TFHSDFTKRFCVTGKAGEAANIFQNMLSKGLLPDADIYNMLLQQFCHTKN 777
Query: 891 LRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNI 950
L+KVRELL +IRK SL+ISSYR+ VR MC+EG V +AL+LK++M+ ++KS ++I++NI
Sbjct: 778 LKKVRELLGVVIRKTASLTISSYRSYVRLMCLEGKVDYALSLKKVMVQESKSASIILYNI 837
Query: 951 LVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKG 1010
L+F+L+++G HVK+VL+ELQE L+ +EVTYNFL+YGFSK KDVS+ +Y++ M+SK
Sbjct: 838 LIFYLLTAGESMHVKKVLNELQEEGLVLNEVTYNFLVYGFSKCKDVSTGMHYLSTMISKE 897
Query: 1011 FNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070
PS RSL +VI+ LC++GEL K LELS+E+ LKG + SI QNAI EGLL + K++ A+
Sbjct: 898 LRPSYRSLSTVITFLCDIGELDKVLELSREIELKGWILGSIAQNAIVEGLLFQDKVEAAK 957
Query: 1071 HFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII--- 1127
FLD++V K L P +I+YDNLIKRFC GRLDKA+DLLN+MLKKG+ P+S+SYDS+I
Sbjct: 958 QFLDRMVYKGLTPQSISYDNLIKRFCCLGRLDKAIDLLNVMLKKGNMPSSTSYDSVICGF 1017
Query: 1128 STCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQ 1187
+ N+L+ AMD HAEM+ R+LKPS+NTW +LV + CQ+G+ EA +LL+SMVQ+G+TPT+
Sbjct: 1018 CSRNQLNQAMDFHAEMLDRNLKPSINTWDLLVKQYCQQGQPAEAAKLLLSMVQVGETPTR 1077
Query: 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGF 1247
MY SV++ Y +ENN KASELMQ MQQSGY PDF THWSLISNL NS+DKD N++SQGF
Sbjct: 1078 LMYCSVIDGYRMENNPRKASELMQMMQQSGYEPDFDTHWSLISNLSNSSDKDYNKSSQGF 1137
Query: 1248 LSRLLSGSGF 1257
LS LL+GSGF
Sbjct: 1138 LSSLLAGSGF 1147
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569756|ref|XP_003553062.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/1162 (52%), Positives = 831/1162 (71%), Gaps = 19/1162 (1%)
Query: 104 NASLKDLLLNISDVVPATARKFLRFLVLKPENVLEILVGFWFECEKVGFRNEKVETLWEI 163
NASLK LL +S +P T R R L P +VL++L+ V EKV +LWEI
Sbjct: 36 NASLKPHLLELSLAIPETTRTCWRLPALGPSHVLQLLLALQSHSVTV----EKVRSLWEI 91
Query: 164 FKWAS--KLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLI 221
FKW + + +H +S E M +L++VG+ +E E LL A+E SNEIF +L+
Sbjct: 92 FKWGAHKNVALNSKHPSQSLETMTSLLVQVGLFEEAEDLLFALE-------SNEIFYDLV 144
Query: 222 QGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNN 281
+GYV D E+ V V+D M+GRG VP CY V I+ LVK+K T LA RV D+V +G
Sbjct: 145 KGYVAARDWEKGVFVYDVMKGRGKVPSKDCYGVLIDLLVKVKRTGLASRVAFDLVDLGVP 204
Query: 282 LTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDL 341
L+ E + V+ LC D KIQE+RN+V+K + E SSLVF+E+A+GYCEK+DF+DL
Sbjct: 205 LSGDEVKALEKVMVQLCVDGKIQEARNMVKKVLVLNSEVSSLVFDEIAFGYCEKRDFKDL 264
Query: 342 LSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCR 401
LSFF E+KC P V+A NR++++LCS +G +RA LF+QELE GF PDE+T+GILIGW+CR
Sbjct: 265 LSFFVEVKCAPSVMAANRVVNSLCSSYGVERAGLFLQELESLGFSPDEVTYGILIGWSCR 324
Query: 402 EGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLST 461
EG +R+AL S +LS+ P V+TYN+LISG+FK GM HA++I+DEM+ RGI P +ST
Sbjct: 325 EGKMRNALSCLSVMLSKSFVPHVYTYNALISGLFKLGMLDHARDIVDEMIERGILPDIST 384
Query: 462 YRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDND 521
+R+L+AGYCK+R+FDE K ++ EM GLI+L+ +E+P+SK F+ILGL P +V+L+RDND
Sbjct: 385 FRVLIAGYCKSRRFDEVKSLIHEMENRGLIKLALMENPISKAFLILGLGPLSVKLKRDND 444
Query: 522 MGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLL 581
G SK EFFD +GNGLYLDTD+DEY++ ++ +E+SM+PNFNS + + GNLK AL+L
Sbjct: 445 GGLSKTEFFDEVGNGLYLDTDVDEYDKHITLDLEESMVPNFNSFVSKECSDGNLKNALVL 504
Query: 582 VDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACC 641
V+EM+ WGQEL FS LV+ LC+SRS IK+ T LLE+MPK A+KLD E+LNL++QA
Sbjct: 505 VEEMLCWGQELLFPEFSNLVRQLCSSRSQIKSMTKLLEQMPKSAHKLDPETLNLVVQAYS 564
Query: 642 KKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE 701
KKGL+ K I DGMLQ ++NE+YT +LM LCKKG +KD +WD+A KWLP LE
Sbjct: 565 KKGLLFKAKIILDGMLQNEFHVKNETYTAILMPLCKKGNMKDFSYYWDVACRNKWLPSLE 624
Query: 702 DCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEEL 761
D K L+ +CH K+LKE+ Q E ML+S P L+SDIC++FLE L TG + A ++++L
Sbjct: 625 DFKCLLVHICHWKMLKEASQFLEIMLLSYPYLKSDICHVFLEVLSSTGLADTALVVLKQL 684
Query: 762 LQQGC-NLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGR 820
Q C NLD Y+HLIRGLC E KFS+AF +LD MLD+++APCLDVSV LIPQL + R
Sbjct: 685 --QPCFNLDHTDYNHLIRGLCNEGKFSLAFTVLDDMLDRSLAPCLDVSVLLIPQLCKAHR 742
Query: 821 LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNM 880
+KA+AL++I LKEQP + A I GFC G +A LFRDMLS+G+ +DE+ N+
Sbjct: 743 YDKAIALKDIILKEQPSFSHAADCALICGFCNMGSTGKADTLFRDMLSKGLTPDDELCNI 802
Query: 881 LIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQN 940
+IQGHC N+LRKV ELL IRK LS++SY+NLVR +C +G V +AL+LK LML Q
Sbjct: 803 IIQGHCHVNDLRKVGELLGFAIRKDWELSLTSYKNLVRLVCRKGRVQFALSLKNLMLAQC 862
Query: 941 KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSK 1000
LII+NIL+F+L+ GN V ++L E++E +++ DEV +NFL+YGF + +D+SSS
Sbjct: 863 PLDGLIIYNILMFYLLKDGNSLDVNKILTEMEEKKVVLDEVGHNFLVYGFLQCRDLSSSL 922
Query: 1001 YYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGL 1060
+Y+ M+SKG PSNRSLR VIS LC+ G L K+L+LSQEMRL+G +HDS +Q +I E L
Sbjct: 923 HYLTTMISKGLKPSNRSLRKVISKLCDAGNLKKALKLSQEMRLRGWMHDSSIQTSIVESL 982
Query: 1061 LSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS 1120
L G +Q AE FLD++ ++ L PD INYD LIK FC +GRL+KAV L+N MLKK + P S
Sbjct: 983 LLCGNIQGAETFLDRMGEESLTPDDINYDYLIKCFCQHGRLNKAVHLMNTMLKKHNIPVS 1042
Query: 1121 SSYDSII---STCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLIS 1177
+SYD II NKLD A++ ++EM++ +LKP ++T +L+H+ CQ+G+T AE+ L+
Sbjct: 1043 TSYDFIIHGFCAQNKLDIALNFYSEMLSWNLKPRIDTVEMLLHRFCQDGKTELAEQFLVD 1102
Query: 1178 MVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSND 1237
M G+TPT++MY +V+ Y ++ NL KASEL+QAMQ++GY PDF THWSLISNL ++
Sbjct: 1103 MSHGGETPTRKMYCTVIKSYHMKKNLRKASELLQAMQENGYQPDFETHWSLISNLNSAKA 1162
Query: 1238 KDNNRNSQGFLSRLLSGSGFIK 1259
KD + S+GFLSRLL SGF++
Sbjct: 1163 KDTDNASKGFLSRLLFKSGFLQ 1184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443988|ref|XP_004139757.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1195 (52%), Positives = 836/1195 (69%), Gaps = 7/1195 (0%)
Query: 70 THIDLSSVSFDGIAKSGLSRSSHLLETEKDKS-YANASLKDLLLNISDVVPATARKFLRF 128
T I+LSS+ G+A+S +SR S LE E + S N SL D LL ISDVVP AR+ R
Sbjct: 46 TTINLSSIDCSGLAQSVISRCSLFLENEGNGSALPNPSLIDFLLEISDVVPEYARRIRRI 105
Query: 129 LVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALML 188
LKPE+VL++ + F E K G + +KVE LW IFK+A++ F+HLPRSCE+MA +L
Sbjct: 106 PELKPEDVLKLFIEFQSEVGKNGIQVKKVECLWRIFKFANESSGNFKHLPRSCEIMASLL 165
Query: 189 IRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF 248
+RVG KEVE L ME +GILL + E+FS LIQG V G++ERAVL+++++R R P
Sbjct: 166 VRVGKFKEVEHFLSEMESQGILLDNPEVFSCLIQGLVCEGNLERAVLIYEKVRRRCNSPS 225
Query: 249 LSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRN 308
LSCY ++ LV+ K T +A VC DMV MG L D EK SF +V+RLLC + E+RN
Sbjct: 226 LSCYHALLDSLVQKKKTQVALAVCTDMVEMGFGLGDEEKASFDNVIRLLCWQGNVLEARN 285
Query: 309 LVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIF 368
LV+K +A PS V ++ GYC+KKDFEDLLSFF E+K P+V +GN+II++LC F
Sbjct: 286 LVKKFVALDFRPSDEVLYQITRGYCDKKDFEDLLSFFFEIKTPPNVSSGNKIIYSLCKDF 345
Query: 369 GSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYN 428
GS+ A LF++ELEH+GF+PDEITFGILI W+C EGNLR A ++ SE+LS GL PD+H+YN
Sbjct: 346 GSESAYLFLRELEHTGFKPDEITFGILICWSCHEGNLRQAFIYMSELLSSGLKPDLHSYN 405
Query: 429 SLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKS 488
+LISGMFK+G+ ++A+ IL EMV++GI P+LST+RILLAGYCKARQF+EAK +V EM
Sbjct: 406 ALISGMFKKGLWENAQGILAEMVDQGIEPNLSTFRILLAGYCKARQFEEAKKIVIEMEIC 465
Query: 489 GLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYER 548
G I+LSS++D L K F LG + S+VRL+RDN+ G SK EFFD LGNGLYLDTDLDEYE+
Sbjct: 466 GFIKLSSVDDQLCKIFSFLGFSESSVRLKRDNNTGVSKTEFFDTLGNGLYLDTDLDEYEK 525
Query: 549 KLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASR 608
+L+K++E+S++P+FN I + KA L LV EM RWGQEL+ +L+K C
Sbjct: 526 RLTKVLEESILPDFNLFIIEDCKNRDCKAVLGLVAEMDRWGQELTSVGLMSLLKRNCKLN 585
Query: 609 SHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESY 668
S IK + E+ P + +L ++L+LL+QA K G I + M+Q I+NE+Y
Sbjct: 586 SKIKPIIDVWERRPYMIAQLGADTLSLLVQAYGKSRSTSSGIGILNEMIQMRTEIKNETY 645
Query: 669 TTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLV 728
L+ SLCKKG + DL WD A+ W+P L DCKSL+ CLC K LKE L E MLV
Sbjct: 646 KALINSLCKKGNLNDLLHCWDRARKDGWVPELHDCKSLISCLCKKGKLKEVFSLLETMLV 705
Query: 729 SCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788
S R DI IFLE+L GF++ L EEL+ G ++DQ AY LI GLCK S+
Sbjct: 706 SHTHSRLDILNIFLERLSEVGFATIGQVLAEELMSLGFSVDQKAYELLIIGLCKVNNISI 765
Query: 789 AFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFIS 848
AF +LD ++ ++M P +DV + LIP L + GR E AVAL+E+ + A +
Sbjct: 766 AFSILDDIMGRSMVPSIDVCLRLIPILCKVGRYETAVALKEMGASKLSSSSHRVFGALMK 825
Query: 849 GFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSL 908
GF + GK E L +DMLS+G+ L+ E+YN L+QGHC+ N KVRELL ++RK SL
Sbjct: 826 GFFMMGKVRETLPLIQDMLSKGISLDAEIYNNLVQGHCKVKNFDKVRELLGIIVRKDFSL 885
Query: 909 SISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVL 968
S+ SY+ LV +MCMEG AL++K+LML +KSH+ +I+NIL+F+++ SGN V ++L
Sbjct: 886 SMPSYKKLVCFMCMEGRSLQALHIKDLMLRNSKSHDCVIYNILIFYILRSGNGSLVPKIL 945
Query: 969 DE-LQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCE 1027
DE L +L+PD VTY+FL+YGFSK KD SSSK Y+ M+ GF PSNRSL +VIS LC+
Sbjct: 946 DELLHGRKLIPDGVTYDFLVYGFSKCKDFSSSKLYLFTMIQLGFRPSNRSLNAVISHLCD 1005
Query: 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTIN 1087
+G+L K+LELSQEM KG VH S VQ+AIAE L+S GKLQEAE FL+++V+ L+P+ ++
Sbjct: 1006 IGQLEKALELSQEMESKGWVHSSAVQDAIAECLISNGKLQEAECFLNRMVEMSLIPEHVD 1065
Query: 1088 YDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC---NKLDPAMDLHAEMM 1144
Y+N+I++FC GR KA+DL+NIMLKKG+ PN++SYD +I +C KL+ A+D H EM+
Sbjct: 1066 YNNIIRKFCQNGRWLKAIDLINIMLKKGNIPNATSYDFVIQSCCAYKKLEEAVDFHTEML 1125
Query: 1145 ARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLG 1204
R LKPS+ TW LV+ LC+EG+T EAER+L+SM +G+ P+++ Y S+++RY ENNL
Sbjct: 1126 DRRLKPSIRTWDKLVYLLCREGQTKEAERVLMSMTAMGEKPSKDAYCSMLDRYRYENNLE 1185
Query: 1205 KASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKD-NNRNS-QGFLSRLLSGSGF 1257
KASE M+AMQ+SGY DF T WSLIS L ++N KD NN NS +GFL+ LLS SGF
Sbjct: 1186 KASETMKAMQESGYELDFETQWSLISKLNDTNLKDSNNSNSNKGFLAGLLSKSGF 1240
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510872|ref|XP_004163793.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/1195 (51%), Positives = 822/1195 (68%), Gaps = 28/1195 (2%)
Query: 70 THIDLSSVSFDGIAKSGLSRSSHLLETEKDKS-YANASLKDLLLNISDVVPATARKFLRF 128
T I+LSS+ G+A+S +SR S LE E + S N SL D LL ISDVVP AR+ R
Sbjct: 46 TTINLSSIDCSGLAQSVISRCSLFLENEGNGSALPNPSLIDFLLEISDVVPEYARRIRRI 105
Query: 129 LVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALML 188
LKPE+VL++ + F E K G + +KVE LW IFK+A++ F+HLPRSCE+MA +L
Sbjct: 106 PELKPEDVLKLFIEFQSEVGKNGIQVKKVECLWRIFKFANESSGNFKHLPRSCEIMASLL 165
Query: 189 IRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF 248
+RVG KEVE L ME +GILL + E+FS LIQG V G++ERAVL+++++R R P
Sbjct: 166 VRVGKFKEVEHFLSEMESQGILLDNPEVFSCLIQGLVCEGNLERAVLIYEKVRRRCNSPS 225
Query: 249 LSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRN 308
LSCY ++ LV+ K T +A VC DMV MG L D EK SF +V+RLLC + E+RN
Sbjct: 226 LSCYHALLDSLVQKKKTQVALAVCTDMVEMGFGLGDEEKASFDNVIRLLCWQGNVLEARN 285
Query: 309 LVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIF 368
LV+K +A PS V ++ GYC+KKDFEDLLSFF E+K P+V +GN+II++LC F
Sbjct: 286 LVKKFVALDFRPSDEVLYQITRGYCDKKDFEDLLSFFFEIKTPPNVSSGNKIIYSLCKDF 345
Query: 369 GSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYN 428
GS+ A LF++ELEH+GF+PDEITFGILI W+C EGNLR A ++ SE+LS GL PD+H+YN
Sbjct: 346 GSESAYLFLRELEHTGFKPDEITFGILICWSCHEGNLRQAFIYMSELLSSGLKPDLHSYN 405
Query: 429 SLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKS 488
+LISGMFK+G+ ++A+ IL EMV++GI P+LST+RILLAGYCKARQF+EAK +V EM
Sbjct: 406 ALISGMFKKGLWENAQGILAEMVDQGIEPNLSTFRILLAGYCKARQFEEAKKIVIEMEIC 465
Query: 489 GLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYER 548
G I+LSS++D L K F LG + S+VRL+RDN+ G SK EFFD LGNGLYLDTDLDEYE+
Sbjct: 466 GFIKLSSVDDQLCKIFSFLGFSESSVRLKRDNNTGVSKTEFFDTLGNGLYLDTDLDEYEK 525
Query: 549 KLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASR 608
L K + KA L LV EM RWGQEL+ +L+K C
Sbjct: 526 GLPK---------------------DCKAVLGLVAEMDRWGQELTSVGLMSLLKRNCKLN 564
Query: 609 SHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESY 668
S IK + E+ P + +L ++L+LL+QA K G I + M+Q I+NE+Y
Sbjct: 565 SKIKPIIDVWERRPYMIAQLGADTLSLLVQAYSKSRSTSSGIGILNEMIQMRTEIKNETY 624
Query: 669 TTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLV 728
L+ SLCKKG + DL WD A+ W+P L DCKSL+ CLC K LKE L E MLV
Sbjct: 625 KALINSLCKKGNLNDLLHCWDRARKDGWVPELHDCKSLISCLCKKGKLKEVFSLLETMLV 684
Query: 729 SCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788
S R DI IFLE+L GF++ L EEL+ G ++DQ AY LI GLCK S+
Sbjct: 685 SHTHSRLDILNIFLERLSEVGFATIGQVLAEELMSLGFSVDQKAYELLIIGLCKVNNISI 744
Query: 789 AFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFIS 848
AF +LD ++ ++M P +DV + LIP L + GR E AVAL+E+ + A +
Sbjct: 745 AFSILDDIMGRSMVPSIDVCLRLIPILCKVGRYETAVALKEMGASKLSSSSHRVFGALMK 804
Query: 849 GFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSL 908
GF + GK E L +DMLS+G+ L+ E+YN L+QGHC+ N KVRELL ++RK SL
Sbjct: 805 GFFMMGKVRETLPLIQDMLSKGISLDAEIYNNLVQGHCKVKNFDKVRELLGIIVRKDFSL 864
Query: 909 SISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVL 968
S+ S + LV +MCMEG AL++K+LML +KSH+ +I+NIL+F+++ SGN V ++L
Sbjct: 865 SMPSCKKLVCFMCMEGRSLQALHIKDLMLRNSKSHDCVIYNILIFYILRSGNGSLVPKIL 924
Query: 969 DE-LQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCE 1027
DE L +L+PD VTY+FL+YGFSK KD+SSSK Y+ M+ GF PSNRSL +VIS LC+
Sbjct: 925 DELLHGRKLIPDGVTYDFLVYGFSKCKDLSSSKLYLFTMIQLGFRPSNRSLNAVISHLCD 984
Query: 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTIN 1087
+G+L K+LELSQEM KG VH S VQ+AIAE L+S GKLQEAE FL+++V+ L+P+ ++
Sbjct: 985 IGQLEKALELSQEMESKGWVHSSAVQDAIAECLISNGKLQEAECFLNRMVEMSLIPEHVD 1044
Query: 1088 YDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC---NKLDPAMDLHAEMM 1144
Y+N+I++FC GR KA+DL+NIMLKKG+ PN++SYD +I +C KL+ A+D H EM+
Sbjct: 1045 YNNIIRKFCQNGRWLKAIDLINIMLKKGNIPNATSYDFVIQSCCAYKKLEEAVDFHTEML 1104
Query: 1145 ARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLG 1204
R LKPS+ TW LV+ LC+EG+T EAER+L+SM +G+ P+++ Y S+++RY ENNL
Sbjct: 1105 DRRLKPSIRTWDKLVYLLCREGQTKEAERVLMSMTAMGEKPSKDAYCSMLDRYRYENNLE 1164
Query: 1205 KASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKD-NNRNS-QGFLSRLLSGSGF 1257
KASE M+AMQ+SGY DF T WSLIS L ++N KD NN NS +GFL+ LLS SGF
Sbjct: 1165 KASETMKAMQESGYELDFETQWSLISKLNDTNLKDSNNSNSNKGFLAGLLSKSGF 1219
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242266|ref|NP_197032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180846|sp|Q9LXF4.1|PP384_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15280 gi|7671497|emb|CAB89338.1| putative protein [Arabidopsis thaliana] gi|332004760|gb|AED92143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1183 (48%), Positives = 804/1183 (67%), Gaps = 14/1183 (1%)
Query: 81 GIAKSGLSRSSHLLETEKDK-SYANASLKDLLLNISDVVPATARKFLRFLVLKPENVLEI 139
I ++ S S +LL K+K +SLKDLL ++SDVVP R+F RF LKPE+VLE+
Sbjct: 49 AIPRNYESSSFNLLSRSKEKRDLTGSSLKDLLFDLSDVVPNITRRFRRFPGLKPEDVLEL 108
Query: 140 LVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVEL 199
+GF E ++ G N KV+ LWEIF+WAS Y+GF+HLP++CE+MA MLIR GM+KEVEL
Sbjct: 109 SLGFESELQRGGIGNIKVQALWEIFRWASVQYQGFKHLPQACEIMASMLIREGMVKEVEL 168
Query: 200 LLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHL 259
LL+ MER G + + IF +LI YV D +AV++FD MR +GLVP SCY++ I+ L
Sbjct: 169 LLMEMERHGDTMVNEGIFCDLIGKYVDDFDSRKAVMLFDWMRRKGLVPLTSCYQILIDQL 228
Query: 260 VKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLE 319
V++ T A+R+C+D V L + DS V+ LLC D+K+QE+R L RK +A G
Sbjct: 229 VRVHRTESAYRICLDWVETRAELNHMNIDSIGKVIELLCLDQKVQEARVLARKLVALGCI 288
Query: 320 PSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQE 379
+S +++++ GY EK+DFEDLLSF E+K PDV GNRI+H+LC FGS+RA ++++E
Sbjct: 289 LNSSIYSKITIGYNEKQDFEDLLSFIGEVKYEPDVFVGNRILHSLCRRFGSERAYVYMEE 348
Query: 380 LEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGM 439
LEH GF+ DE+TFGILIGW C EG+++ A+++ SEI+S+G PDV++YN+++SG+F++G+
Sbjct: 349 LEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILSGLFRKGL 408
Query: 440 SKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDP 499
+H ILDEM G+ SLST++I++ GYCKARQF+EAK +V++M GLIE S +EDP
Sbjct: 409 WQHTHCILDEMKENGMMLSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIEASKVEDP 468
Query: 500 LSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMI 559
LS+ F ++G +P AVRL+RDND FSK EFFD+LGNGLYL TDLD YE++++ +++ S++
Sbjct: 469 LSEAFSLVGFDPLAVRLKRDNDSTFSKAEFFDDLGNGLYLHTDLDAYEQRVNMVLDRSVL 528
Query: 560 PNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLE 619
P FNSLI G+L+ AL L+DEM RWGQ+LS F+ L++ LCASR+H++ LLE
Sbjct: 529 PEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLRVSISLLE 588
Query: 620 KMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKG 679
K PKLA +LD E+LN L+Q CKKG R K IF M+Q I+N +YT+L+ CKK
Sbjct: 589 KWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLIRCFCKKE 648
Query: 680 FIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICY 739
+ DL W AQN WLP L DC L CL K L++E +QLFE + +S P +S+ C
Sbjct: 649 TLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERVFISYPLSQSEACR 708
Query: 740 IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK 799
IF+EKL V GFS AH++V+ L +GC ++Q Y+HLI+GLC EKK S AF +LD MLDK
Sbjct: 709 IFVEKLTVLGFSCIAHSVVKRLEGEGCIVEQEVYNHLIKGLCTEKKDSAAFAILDEMLDK 768
Query: 800 NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEA 859
P L + LIP+L R + A L E + H A I G + GK +A
Sbjct: 769 KHIPSLGSCLMLIPRLCRANKAGTAFNLAE------QIDSSYVHYALIKGLSLAGKMLDA 822
Query: 860 SKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRW 919
R MLS G+ +++YN++ QG+C+ NN KV E+L M+RK + S+ SYR VR
Sbjct: 823 ENQLRIMLSNGLSSYNKIYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSVKSYREYVRK 882
Query: 920 MCMEGGVPWALNLKE-LMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLP 978
MC+E A++LKE L+LG++ +II+N+L+F++ + N V +VL E+Q +LP
Sbjct: 883 MCLEPQSLSAISLKEFLLLGESNPGGVIIYNMLIFYMFRAKNHLEVNKVLLEMQGRGVLP 942
Query: 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELS 1038
DE T+NFL++G+S D SSS Y++AM+SKG P+NRSLR+V S LC+ G++ K+L+L
Sbjct: 943 DETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKPNNRSLRAVTSSLCDNGDVKKALDLW 1002
Query: 1039 QEMRLKGL-VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCG 1097
Q M KG + S+VQ I E L+S+G++ +AE FL ++ ++ NYDN+IK+
Sbjct: 1003 QVMESKGWNLGSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMMAP--NYDNIIKKLSD 1060
Query: 1098 YGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC---NKLDPAMDLHAEMMARDLKPSMNT 1154
G LD AV LLN MLK S P SSSYDS+I+ N+LD AMD H EM+ L PS++T
Sbjct: 1061 RGNLDIAVHLLNTMLKNQSIPGSSSYDSVINGLLRYNQLDKAMDFHTEMVELGLSPSIST 1120
Query: 1155 WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQ 1214
W LVHK C+ + E+ERL+ SMV LG++P+QEM+ +V++R+ +E N KASE+M+ MQ
Sbjct: 1121 WSGLVHKFCEACQVLESERLIKSMVGLGESPSQEMFKTVIDRFRVEKNTVKASEMMEMMQ 1180
Query: 1215 QSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLSGSGF 1257
+ GY DF THWSLISN+ +S +K +GFLSRLLSG+GF
Sbjct: 1181 KCGYEVDFETHWSLISNMSSSKEKKTTTAGEGFLSRLLSGNGF 1223
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807549|ref|XP_002871658.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317495|gb|EFH47917.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/1146 (49%), Positives = 786/1146 (68%), Gaps = 13/1146 (1%)
Query: 117 VVPATARKFLRFLVLKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRH 176
V+P R+F RF LKPENV+E+L+GF E ++ + KV+ LWEIF+WAS Y+GF+H
Sbjct: 82 VIPNIIRRFRRFPGLKPENVVELLLGFESELQRGRIGSTKVQALWEIFRWASGQYQGFKH 141
Query: 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLV 236
LP++CE+MA MLIR GM+KEVELLL+ MER G + IF +LI YV D +AV++
Sbjct: 142 LPQACEIMASMLIREGMVKEVELLLMEMERHGDTMVKEGIFCDLIGKYVDAFDSRKAVML 201
Query: 237 FDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296
FD M +GLVP SCY++ I+HLV++ T A+R+C+D V + DS V+ L
Sbjct: 202 FDWMTRKGLVPLTSCYQILIDHLVRVHRTESAYRICLDWVETTAESNHMNIDSIGKVIEL 261
Query: 297 LCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLA 356
LC D+++QE+R L RK +A G +S +++++ GY EK+DF+DLLSF E+K PDV
Sbjct: 262 LCLDQRVQEARVLARKLVALGCNLNSSIYSKITIGYSEKQDFDDLLSFIGEVKYEPDVFV 321
Query: 357 GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEIL 416
GNRI+H+LC FGS+RA ++++ELEH GF+PDE+TFGILIGW C EG+++ A+++ SEI
Sbjct: 322 GNRIVHSLCRRFGSERAYVYMEELEHLGFKPDEVTFGILIGWCCYEGDIKRAVLYLSEIT 381
Query: 417 SRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFD 476
S+G PDV +Y++++SG+F++G+ +H ILDEM G+ SLST +I++ GYCKARQF+
Sbjct: 382 SKGFKPDVCSYDAILSGLFRKGLWQHTHCILDEMKENGMLLSLSTCKIMVTGYCKARQFE 441
Query: 477 EAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNG 536
EAK++V++M GLIE S +EDPLS+ F ++G +P AVRL+RDND FSK EFFD+LGNG
Sbjct: 442 EAKMIVNKMFGYGLIEASKVEDPLSEAFSLVGFDPLAVRLKRDNDSTFSKAEFFDDLGNG 501
Query: 537 LYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV 596
LYL TDLD YE++++ +++ S++P FNSLI G+L+ AL L+DEM RWGQ+LS
Sbjct: 502 LYLHTDLDAYEQRVNMVLDRSVLPEFNSLIVRACKDGDLQTALRLLDEMTRWGQKLSRRS 561
Query: 597 FSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGM 656
F+ L++ LCASR+H++ LLEK PKLAN+LD E+LN L+Q CKKG R K IF M
Sbjct: 562 FAVLMRSLCASRAHLRVSVSLLEKWPKLANQLDGETLNFLVQEYCKKGFSRHSKLIFHRM 621
Query: 657 LQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLL 716
+Q I+N +YT+L+ CKK + DL W +AQN WLP L DC L ECL K L+
Sbjct: 622 VQMHHPIDNVTYTSLIRCFCKKETLNDLLNVWGVAQNDNWLPDLNDCGDLWECLVRKGLV 681
Query: 717 KESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHL 776
E++QLFE + +S P +S+ C I +EKL V GFS AH++V+ L+ +G ++Q Y+HL
Sbjct: 682 AEAVQLFERVFISYPPSQSEACRILVEKLTVLGFSCIAHSVVKRLIGEGYIVEQEVYNHL 741
Query: 777 IRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQP 836
I+GLC EKK S AF +LD MLDK P L + LIP+L R + A L E S + P
Sbjct: 742 IKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCRANKAGMAFILAEQS--DSP 799
Query: 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRE 896
+ H A I G C+ GK +A R MLS G+L +++YN++ QG+C+ NN KV E
Sbjct: 800 YV----HYALIKGLCLAGKVLDAENQLRRMLSNGLLPYNKIYNLMFQGYCKGNNWIKVEE 855
Query: 897 LLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE-LMLGQNKSHNLIIFNILVFHL 955
+L M+RK + S+ SYR VR MC+E A++LKE L+LG++ +II+N+L+F++
Sbjct: 856 VLGLMVRKNVICSVKSYREYVRKMCLELQFLSAISLKEFLLLGESNPSGVIIYNMLIFYM 915
Query: 956 MSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN 1015
+ N V +VL E+Q ELLPDE T+NFL++G+S D SSS Y++AM+SKG P+N
Sbjct: 916 FRATNHLEVNKVLLEMQGRELLPDETTFNFLVHGYSSSGDYSSSLRYLSAMISKGMKPNN 975
Query: 1016 RSLRSVISCLCEVGELGKSLELSQEMRLKG-LVHDSIVQNAIAEGLLSRGKLQEAEHFLD 1074
RSLR+V S LC+ G++ K+L+L Q M KG ++ S+ Q I E L+S+G++ +AE FL
Sbjct: 976 RSLRAVTSSLCDNGDVKKALDLWQVMESKGWILGSSVAQTKIVESLISKGEIPKAEDFLT 1035
Query: 1075 QIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS---TCN 1131
++ V NYDN+IK+ LD AV LLN MLK S P+SSSYDS+IS CN
Sbjct: 1036 RVTRN--VMKAPNYDNIIKKLSDRENLDIAVHLLNTMLKNQSIPDSSSYDSVISGLLRCN 1093
Query: 1132 KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYS 1191
+LD AMD H EM+ L PS++TW LVHK C+ + E+ERL+ SM LG+TP+QEM+
Sbjct: 1094 QLDKAMDFHTEMVELGLSPSISTWTGLVHKYCEACQVEESERLIKSMAGLGETPSQEMFK 1153
Query: 1192 SVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRL 1251
+V++R+ +ENN KASE+M+ MQ+ GY DF THWSLISNL + +K +GFLSRL
Sbjct: 1154 TVIDRFRVENNTVKASEMMEMMQKCGYEVDFETHWSLISNLSSCKEKKTTTVGEGFLSRL 1213
Query: 1252 LSGSGF 1257
LSG+GF
Sbjct: 1214 LSGNGF 1219
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357120628|ref|XP_003562027.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like, partial [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1182 (35%), Positives = 652/1182 (55%), Gaps = 24/1182 (2%)
Query: 81 GIAKSGLSRSSHLLETEKDKSYANASLKDLLLNISDVVPATARKFLRFLVLKPENVLEIL 140
GI + +++ S + E+ +D N SL DLL + P T R+F R LKPE+ +IL
Sbjct: 93 GIGELIIAKCSSIFESGRDTFEGNCSLHDLLKPGLWLSPETLRRFWRASTLKPEDFFDIL 152
Query: 141 VGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELL 200
+GF ++ K LW +++WAS K FRHLPRS ++M +L M + E L
Sbjct: 153 IGFGQGAAEI----RKARFLWNLYRWASWQSKDFRHLPRSNDLMVSILAYAQMFNQAESL 208
Query: 201 LLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260
LL ++ L + +FS + Q Y G ++++V +FD R + L+P SCY+V +N LV
Sbjct: 209 LLLLDDNKALTNAGGLFSQITQAYSETGHLDKSVALFDHARYKCLIPSASCYQVLLNLLV 268
Query: 261 KMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD-VVRLLCRDRKIQESRNLVRKAMAFGLE 319
+ + L RV +DM+ +G L + D V++ L + K+ ++ ++R+ + +E
Sbjct: 269 RKRKDELVLRVYLDMLEVG--LGSCTEGHILDFVIKALVKRDKLLQAIGVIRQLKSLDIE 326
Query: 320 PSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQE 379
S + VA +C+KKD D+++F E K P++ NRI+ +LC+ GS A Q
Sbjct: 327 ISKGSLSTVAKEFCQKKDIGDMMNFLEEWKHLPELRLCNRILVSLCTNLGSDEAWFVFQR 386
Query: 380 LEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGM 439
LE GF PD TFGI I +CRE L++A ++ SE SR + P V YN++I +F EG+
Sbjct: 387 LEALGFTPDATTFGIFISHSCREMKLKAAFLYLSECFSRHVEPKVSAYNAIIGSVFTEGL 446
Query: 440 SKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDP 499
+HAK I ++M+ R I P L TY++LLAGYCK RQFD+ + ++ M +G+ + S
Sbjct: 447 YRHAKYIFEDMIERKIMPELLTYKVLLAGYCKYRQFDDIEEILRTMKTNGINDPPSGNCV 506
Query: 500 LSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMI 559
SK LGL+ V+++RDN GF K EFFD++GNGLYLDTD ++E L +I+ +++
Sbjct: 507 FSKALSFLGLDHLGVKVKRDNATGFPKAEFFDSVGNGLYLDTDSKKFETLLVQILNNALY 566
Query: 560 PNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLE 619
P+ +S I +GN+ +ALL+ DE +WG ++S + S L+K LC S H L+E
Sbjct: 567 PDISSEIVSACQQGNVASALLMKDEAFQWGHDISPASCSELIKTLCMSPEHAMNAIDLME 626
Query: 620 KMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKG 679
+MP +K D ++LNL++Q K + + + D + +RGL I ++YT LL+ C +
Sbjct: 627 EMPCTFDKFDAQTLNLVVQTLSKNRMSARARLVLDRLSRRGLPINQDTYTYLLLGFCVER 686
Query: 680 FIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICY 739
I W++A W P +D +L+ +C +++E+L+L + P L
Sbjct: 687 NIVGFWECWNVATEFSWSPDSKDMIALISHMCEWGVIEEALKLISVLTDCYPNLCLSAYC 746
Query: 740 IFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK 799
L++LC TG++S A++E LL++G + + G KE+K + + + D L+K
Sbjct: 747 ALLKELCRTGYTSVGCAMLEALLEKGVAVRHSLILSVTEGFLKEQKSAESIGLYDMWLNK 806
Query: 800 NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLL-----LFSFHSAFISGFCVTG 854
+ VS L Q F L + A R + L QP++ S S + G
Sbjct: 807 SR-----VSDVLTYQ-FPFSSLARFDAERCMDLV-QPIMNLECSAVSACSCIVKELLQIG 859
Query: 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYR 914
K +A F+ + GM N L+Q +C N RKV +L M++ S+SISSYR
Sbjct: 860 KIGQALSFFQAS-TLGMRSSGTFVNSLLQSYCCLNKWRKVDAVLCTMLKIHASISISSYR 918
Query: 915 NLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQEN 974
LV MC + AL LKEL+ +KS +LI++NIL+F+L+ NI + VL +++ N
Sbjct: 919 FLVHRMCEQSQFSSALRLKELVQDSDKSTDLILYNILIFYLIRRRNILQIHDVLKDMKHN 978
Query: 975 ELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKS 1034
+ PD+ TY+FL+YGF K D S + A +++G PSNRSLR V+S C +G L KS
Sbjct: 979 GISPDKTTYDFLVYGFHKSGDSDRSVSMLDACIAQGLTPSNRSLRIVLSHYCRLGNLEKS 1038
Query: 1035 LELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKR 1094
LEL + G H +++ + LLS + EA+ L+ + L+ IN+D LIK
Sbjct: 1039 LELFYLIERSGWKHGLLIEMTLISSLLSFRRHSEAKSCLNNLSRNALIISDINFDVLIKE 1098
Query: 1095 FCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII---STCNKLDPAMDLHAEMMARDLKPS 1151
FC G ++ +V+LLN MLKKG P +SY S+I + D A+D AEM LKPS
Sbjct: 1099 FCIQGDVEMSVNLLNTMLKKGRLPGEASYSSVIYRLCILKEFDQALDFLAEMKLEHLKPS 1158
Query: 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211
+ L+ LC GR ++A+ +L ++ G P+ MY V + Y NN +A++L+
Sbjct: 1159 DISCDALIRGLCAIGRISDAKNILEMLMTFGSVPSFGMYRIVFDNYCTSNNTLEATQLLH 1218
Query: 1212 AMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253
MQQ+G++P+F HWS+ISNL + DK Q LS L+S
Sbjct: 1219 DMQQAGHTPNFEMHWSVISNLSRT-DKKTGGYEQPILSNLIS 1259
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1262 | ||||||
| TAIR|locus:2150971 | 1227 | AT5G15280 [Arabidopsis thalian | 0.930 | 0.956 | 0.485 | 4.9e-298 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.422 | 0.827 | 0.249 | 3.2e-48 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.373 | 0.758 | 0.265 | 8.7e-48 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.379 | 0.751 | 0.256 | 2.3e-47 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.769 | 0.873 | 0.216 | 5.2e-47 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.639 | 0.889 | 0.241 | 8.9e-47 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.360 | 0.735 | 0.275 | 3.2e-45 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.370 | 0.744 | 0.257 | 1.4e-44 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.419 | 0.842 | 0.245 | 4.8e-44 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.414 | 0.571 | 0.262 | 3.8e-43 |
| TAIR|locus:2150971 AT5G15280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2861 (1012.2 bits), Expect = 4.9e-298, P = 4.9e-298
Identities = 578/1191 (48%), Positives = 805/1191 (67%)
Query: 75 SSVSFDG-IAKSGLSRSSHLLETEKDK-SYANASLKDLLLNISDVVPATARKFLRFLVLK 132
SS+ D I ++ S S +LL K+K +SLKDLL ++SDVVP R+F RF LK
Sbjct: 42 SSLGNDSAIPRNYESSSFNLLSRSKEKRDLTGSSLKDLLFDLSDVVPNITRRFRRFPGLK 101
Query: 133 PENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVG 192
PE+VLE+ +GF E ++ G N KV+ LWEIF+WAS Y+GF+HLP++CE+MA MLIR G
Sbjct: 102 PEDVLELSLGFESELQRGGIGNIKVQALWEIFRWASVQYQGFKHLPQACEIMASMLIREG 161
Query: 193 MLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCY 252
M+KEVELLL+ MER G + + IF +LI YV D +AV++FD MR +GLVP SCY
Sbjct: 162 MVKEVELLLMEMERHGDTMVNEGIFCDLIGKYVDDFDSRKAVMLFDWMRRKGLVPLTSCY 221
Query: 253 RVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRK 312
++ I+ LV++ T A+R+C+D V L + DS V+ LLC D+K+QE+R L RK
Sbjct: 222 QILIDQLVRVHRTESAYRICLDWVETRAELNHMNIDSIGKVIELLCLDQKVQEARVLARK 281
Query: 313 AMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKR 372
+A G +S +++++ GY EK+DFEDLLSF E+K PDV GNRI+H+LC FGS+R
Sbjct: 282 LVALGCILNSSIYSKITIGYNEKQDFEDLLSFIGEVKYEPDVFVGNRILHSLCRRFGSER 341
Query: 373 ADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLIS 432
A ++++ELEH GF+ DE+TFGILIGW C EG+++ A+++ SEI+S+G PDV++YN+++S
Sbjct: 342 AYVYMEELEHLGFKQDEVTFGILIGWCCYEGDIKRAVLYLSEIMSKGYKPDVYSYNAILS 401
Query: 433 GMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIE 492
G+F++G+ +H ILDEM G+ SLST++I++ GYCKARQF+EAK +V++M GLIE
Sbjct: 402 GLFRKGLWQHTHCILDEMKENGMMLSLSTFKIMVTGYCKARQFEEAKRIVNKMFGYGLIE 461
Query: 493 LSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSK 552
S +EDPLS+ F ++G +P AVRL+RDND FSK EFFD+LGNGLYL TDLD YE++++
Sbjct: 462 ASKVEDPLSEAFSLVGFDPLAVRLKRDNDSTFSKAEFFDDLGNGLYLHTDLDAYEQRVNM 521
Query: 553 IIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIK 612
+++ S++P FNSLI G+L+ AL L+DEM RWGQ+LS F+ L++ LCASR+H++
Sbjct: 522 VLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAHLR 581
Query: 613 ACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLL 672
LLEK PKLA +LD E+LN L+Q CKKG R K IF M+Q I+N +YT+L+
Sbjct: 582 VSISLLEKWPKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPIDNVTYTSLI 641
Query: 673 MSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732
CKK + DL W AQN WLP L DC L CL K L++E +QLFE + +S P
Sbjct: 642 RCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFERVFISYPL 701
Query: 733 LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKM 792
+S+ C IF+EKL V GFS AH++V+ L +GC ++Q Y+HLI+GLC EKK S AF +
Sbjct: 702 SQSEACRIFVEKLTVLGFSCIAHSVVKRLEGEGCIVEQEVYNHLIKGLCTEKKDSAAFAI 761
Query: 793 LDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSF-HSAFISGFC 851
LD MLDK P L + LIP+L R + A +L EQ + S+ H A I G
Sbjct: 762 LDEMLDKKHIPSLGSCLMLIPRLCRANKAGTA-----FNLAEQ--IDSSYVHYALIKGLS 814
Query: 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSIS 911
+ GK +A R MLS G+ +++YN++ QG+C+ NN KV E+L M+RK + S+
Sbjct: 815 LAGKMLDAENQLRIMLSNGLSSYNKIYNVMFQGYCKGNNWMKVEEVLGLMVRKNIICSVK 874
Query: 912 SYRNLVRWMCMEGGVPWALNLKE-LMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDE 970
SYR VR MC+E A++LKE L+LG++ +II+N+L+F++ + N V +VL E
Sbjct: 875 SYREYVRKMCLEPQSLSAISLKEFLLLGESNPGGVIIYNMLIFYMFRAKNHLEVNKVLLE 934
Query: 971 LQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGE 1030
+Q +LPDE T+NFL++G+S D SSS Y++AM+SKG P+NRSLR+V S LC+ G+
Sbjct: 935 MQGRGVLPDETTFNFLVHGYSSSADYSSSLRYLSAMISKGMKPNNRSLRAVTSSLCDNGD 994
Query: 1031 LGKSLELSQEMRLKGL-VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYD 1089
+ K+L+L Q M KG + S+VQ I E L+S+G++ +AE FL ++ ++ NYD
Sbjct: 995 VKKALDLWQVMESKGWNLGSSVVQTKIVETLISKGEIPKAEDFLTRVTRNGMMAP--NYD 1052
Query: 1090 NLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC---NKLDPAMDLHAEMMAR 1146
N+IK+ G LD AV LLN MLK S P SSSYDS+I+ N+LD AMD H EM+
Sbjct: 1053 NIIKKLSDRGNLDIAVHLLNTMLKNQSIPGSSSYDSVINGLLRYNQLDKAMDFHTEMVEL 1112
Query: 1147 DLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKA 1206
L PS++TW LVHK C+ + E+ERL+ SMV LG++P+QEM+ +V++R+ +E N KA
Sbjct: 1113 GLSPSISTWSGLVHKFCEACQVLESERLIKSMVGLGESPSQEMFKTVIDRFRVEKNTVKA 1172
Query: 1207 SELMQAMQQSGYSPDFSTHWSLIXXXXXXXXXXXXXXXQGFLSRLLSGSGF 1257
SE+M+ MQ+ GY DF THWSLI +GFLSRLLSG+GF
Sbjct: 1173 SEMMEMMQKCGYEVDFETHWSLISNMSSSKEKKTTTAGEGFLSRLLSGNGF 1223
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 3.2e-48, P = 3.2e-48
Identities = 136/545 (24%), Positives = 262/545 (48%)
Query: 687 FWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDI--CYIFLEK 744
F D+ Q+R LP + D L + K + L L C + + I I +
Sbjct: 76 FRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLAL--CKQMESKGIAHSIYTLSIMINC 132
Query: 745 LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPC 804
C S A + + ++++ G D + ++ L+ GLC E + S A +++D M++ P
Sbjct: 133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192
Query: 805 LDVSVSLIPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKL 862
L +L+ L G++ AV L R + QP + + ++ C +G+ A +L
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVT--YGPVLNVMCKSGQTALAMEL 250
Query: 863 FRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCM 922
R M + + L+ Y+++I G C+ +L L + M K I +Y L+ C
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 923 EGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVT 982
G L M+ + S N++ F++L+ + G + ++L E+ + + P+ +T
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 983 YNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMR 1042
YN LI GF K + + + M+SKG +P + +I+ C+ + LEL +EM
Sbjct: 371 YNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS 430
Query: 1043 LKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLD 1102
L+G++ +++ N + +G GKL+ A+ ++V + + PD ++Y L+ C G L+
Sbjct: 431 LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELE 490
Query: 1103 KAVDLLNIMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLV 1159
KA+++ + K + Y II CN K+D A DL + + +K +++++
Sbjct: 491 KALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
Query: 1160 HKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219
+LC++ ++A+ L M + G P + Y+ ++ + +++ A+EL++ M+ SG+
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFP 610
Query: 1220 PDFST 1224
D ST
Sbjct: 611 ADVST 615
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 8.7e-48, P = 8.7e-48
Identities = 127/478 (26%), Positives = 241/478 (50%)
Query: 752 SNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSL 811
S A + + ++++ G D + +S LI GLC E + S A +++D M++ P L +L
Sbjct: 124 SLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNAL 183
Query: 812 IPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQ 869
+ L G++ AV L R + QP + + + C +G+ A +L R M +
Sbjct: 184 VNGLCLNGKVSDAVLLIDRMVETGFQPNEVT--YGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 870 GMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWA 929
+ L+ Y+++I G C+ +L L + M K I Y L+R C G
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301
Query: 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYG 989
L M+ + + +++ F+ L+ + G + + + E+ + + PD VTY LI G
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Query: 990 FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD 1049
F K + + + + MVSKG P+ R+ +I+ C+ + LEL ++M L+G+V D
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421
Query: 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLN 1109
++ N + +G GKL+ A+ ++V + + PD ++Y L+ C G +KA+++
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481
Query: 1110 IMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG 1166
+ K + Y+ II CN K+D A DL + + +KP + T+++++ LC++G
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Query: 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFST 1224
+EA+ L M + G +P Y+ ++ + E + K+++L++ +++ G+S D ST
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 2.3e-47, P = 2.3e-47
Identities = 126/492 (25%), Positives = 248/492 (50%)
Query: 738 CYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797
C+ KLC+ FS+ + ++++ G + + +S LI GLC E + S A +++D M+
Sbjct: 132 CFCRCRKLCLA-FSA-----MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGK 855
+ P L +L+ L +G+ +A+ L + + QP + + ++ C +G+
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT--YGPVLNVMCKSGQ 243
Query: 856 AEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRN 915
A +L R M + + L+ Y+++I G C+ +L L + M K ++ +I +Y
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Query: 916 LVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE 975
L+ C G L M+ + + N++ F++L+ + G + + + E+
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 976 LLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSL 1035
+ PD +TY LI GF K + + + MVSKG +P+ R+ +I+ C+ + L
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 423
Query: 1036 ELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRF 1095
EL ++M L+G+V D++ N + +G GKL A+ ++V + + P+ + Y L+
Sbjct: 424 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Query: 1096 CGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSM 1152
C G +KA+++ + K + Y+ II CN K+D A DL + + +KP +
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGV 543
Query: 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212
T+++++ LC++G +EAE L M + G P Y+ ++ + + + K+ +L++
Sbjct: 544 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 603
Query: 1213 MQQSGYSPDFST 1224
+++ G+S D ST
Sbjct: 604 LKRCGFSVDAST 615
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 5.2e-47, P = 5.2e-47
Identities = 219/1011 (21%), Positives = 432/1011 (42%)
Query: 176 HLPRSCEVMALMLIRV-GMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAV 234
H +C M L +RV G L+E+ + M++ I+ + + + + G +++A
Sbjct: 116 HTTETCNYM-LEALRVDGKLEEMAYVFDLMQKR-IIKRDTNTYLTIFKSLSVKGGLKQAP 173
Query: 235 LVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVV 294
+MR G V Y I+ L+K + A V M++ G L+ ++ ++
Sbjct: 174 YALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFR-PSLQ--TYSSLM 230
Query: 295 RLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEV--AYGYCEK-KDFEDLLSFFTEMKCT 351
L + R I L+++ GL+P+ F G K + ++L + C
Sbjct: 231 VGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCG 290
Query: 352 PDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVF 411
PDV+ +I LC+ A ++++ +PD +T+ L+ +L S F
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 412 FSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCK 471
+SE+ G PDV T+ L+ + K G A + LD M ++GI P+L TY L+ G +
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410
Query: 472 ARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVR-LRRDNDMGFSKVEFF 530
+ D+A + M G+ + + G + SA+ + G +
Sbjct: 411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Query: 531 DNLGNGLYLDTDLDEYERKLSKIIED-SMIPN---FNSLIKMVHARGNLKAALLLVDEMV 586
N D +++ ++D ++P+ +N ++K G + A+ L+ EM+
Sbjct: 471 CNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530
Query: 587 RWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLV 646
G E + V ++L+ L + + + +M ++ K + N L+ K G +
Sbjct: 531 ENGCEPDVIVVNSLINTLYKA-DRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Query: 647 RDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIK-DLHAFWDIAQNRKWLPGLEDCKS 705
++ ++F+GM+Q+G ++ TL LCK + L + + + +P + +
Sbjct: 590 QEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM-MDMGCVPDVFTYNT 648
Query: 706 LVECLCHKKLLKESLQLFECML-VSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQ 764
++ L +KE++ F M + P + +C + L + +A+ ++ L
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMKKLVYPDFVT-LCTL-LPGVVKASLIEDAYKIITNFLYN 706
Query: 765 GCNLDQMA---YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQL---FRT 818
C DQ A + LI + E A + ++ + C D L+P + +
Sbjct: 707 -C-ADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGI--CRDGDSILVPIIRYSCKH 762
Query: 819 GRLEKAVALREISLKE---QPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLED 875
+ A L E K+ QP L ++ I G E A +F + S G + +
Sbjct: 763 NNVSGARTLFEKFTKDLGVQPKL--PTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDV 820
Query: 876 EVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLK-E 934
YN L+ + ++ + ++ EL M + ++ ++ + G V AL+L +
Sbjct: 821 ATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 935 LMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHK 994
LM ++ S + L+ L SG ++ K++ + + + P+ YN LI GF K
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 995 DVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQN 1054
+ ++ MV +G P ++ ++ CLC VG + + L +E++ GL D + N
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 1055 AIAEGLLSRGKLQEAEHFLDQI-VDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113
I GL +L+EA +++ + + PD Y++LI G +++A + N + +
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 1114 KGSTPNSSSYDSII---STCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHK 1161
G PN +++++I S K + A ++ M+ P+ T+ L ++
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 8.9e-47, P = 8.9e-47
Identities = 204/843 (24%), Positives = 365/843 (43%)
Query: 394 ILIGWTCREGNLRSALVFFSEI-LSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVN 452
ILIG T + L L FF+ + L RG + ++ LI + K + A +L ++
Sbjct: 76 ILIG-TIDDPKL--GLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLL 132
Query: 453 RGITPSLSTYRILLAGY--CKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMI--LG 508
R + PS + +L + Y CK +++ +S + L+ L MI +
Sbjct: 133 RALKPS-DVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRV----LDGVLVFKMMITKVS 187
Query: 509 LNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKM 568
L P VR G K F + G + L D+ I D I + +I+
Sbjct: 188 LLPE-VRTLSALLHGLVK---FRHFGLAMELFNDMVSVG-----IRPDVYI--YTGVIRS 236
Query: 569 VHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKL 628
+ +L A ++ M G ++++ ++ L+ GLC + + G+ + + K
Sbjct: 237 LCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLC-KKQKVWEAVGIKKDLAGKDLKP 295
Query: 629 DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFW 688
D + L+ CK G ++ D ML + + ++L+ L K+G I++
Sbjct: 296 DVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLV 355
Query: 689 DIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLR-SDICY-IFLEKLC 746
+ P L +L++ LC + E+ LF+ M LR +D+ Y I ++ C
Sbjct: 356 KRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM--GKIGLRPNDVTYSILIDMFC 413
Query: 747 VTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLD 806
G A + + E++ G L Y+ LI G CK S A + M++K + P +
Sbjct: 414 RRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVV 473
Query: 807 VSVSLIPQLFRTGRLEKAVAL-REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRD 865
SL+ G++ KA+ L E++ K +++F + +SG G +A KLF +
Sbjct: 474 TYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTF-TTLLSGLFRAGLIRDAVKLFNE 532
Query: 866 MLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGG 925
M + YN++I+G+CE ++ K E L M K + SYR L+ +C+ G
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592
Query: 926 VPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNF 985
A + + N N I + L+ G + V E+ + + D V Y
Sbjct: 593 ASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGV 652
Query: 986 LIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKG 1045
LI G KHKD + M +G P + S+I + G+ ++ + M +G
Sbjct: 653 LIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEG 712
Query: 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFC-GYGRLDKA 1104
V + + A+ GL G + EAE ++ VP+ + Y + G + KA
Sbjct: 713 CVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKA 772
Query: 1105 VDLLNIMLKKGSTPNSSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHK 1161
V+L N +LK G N+++Y+ +I C +++ A +L M+ + P T+ ++++
Sbjct: 773 VELHNAILK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINE 831
Query: 1162 LCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221
LC+ +A L SM + G P + Y+++++ + +GKA+EL M + G P+
Sbjct: 832 LCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
Query: 1222 FST 1224
T
Sbjct: 892 NKT 894
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 129/468 (27%), Positives = 227/468 (48%)
Query: 765 GCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVS-LIPQLFRTGRLEK 823
G D + +S L+ G C E + S A ++D M++ P L V+VS LI L GR+ +
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL-VTVSTLINGLCLKGRVSE 193
Query: 824 AVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNML 881
A+ L R + QP + + ++ C +G + A LFR M + + Y+++
Sbjct: 194 ALVLIDRMVEYGFQPDEVT--YGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 251
Query: 882 IQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKEL--MLGQ 939
I C+ + L + M K + + +Y +L+ +C +G W K L M+G+
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDG--KWDDGAKMLREMIGR 309
Query: 940 NKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSS 999
N +++ F+ L+ + G + K + +E+ + PD +TYN LI GF K + +
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA 369
Query: 1000 KYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEG 1059
MVSKG P + +I+ C+ + + L +E+ KGL+ ++I N + G
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429
Query: 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPN 1119
GKL A+ ++V + + P + Y L+ C G L+KA+++ M K T
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489
Query: 1120 SSSYDSII-STCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLI 1176
Y+ II CN K+D A L + + +KP + T++V++ LC++G +EA+ L
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFR 549
Query: 1177 SMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFST 1224
M + G TP Y+ ++ + + L + EL++ M+ G+S D ST
Sbjct: 550 KMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSST 597
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 123/477 (25%), Positives = 233/477 (48%)
Query: 754 AHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIP 813
A A++ ++++ G D + S L+ G C K+ S A ++D M P +LI
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 193
Query: 814 QLFRTGRLEKAVAL--REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGM 871
LF + +AVAL R ++ QP L F++ + ++G C G + A L + M +G
Sbjct: 194 GLFLHNKASEAVALIDRMVARGCQPDL-FTYGTV-VNGLCKRGDIDLALSLLKKM-EKGK 250
Query: 872 LLEDEV-YNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWAL 930
+ D V Y +I C N+ L + M K + ++ +Y +L+R +C G A
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 931 NLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF 990
L M+ + + N++ F+ L+ + G + +++ DE+ + + PD TY+ LI GF
Sbjct: 311 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Query: 991 SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDS 1050
H + +K+ M+SK P+ + ++I C+ + + +EL +EM +GLV ++
Sbjct: 371 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNI 1110
+ N + +GL G A+ ++V + PD I Y L+ C YG+L+KA+ +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490
Query: 1111 MLKKGSTPNSSSYDSIIS-TCN--KLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGR 1167
+ K P+ +Y+ +I C K++ DL + + +KP++ + ++ C++G
Sbjct: 491 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGL 550
Query: 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFST 1224
EA+ L M + G P Y++++ + + ++EL++ M+ G+ D ST
Sbjct: 551 KEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAST 607
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 4.8e-44, P = 4.8e-44
Identities = 134/545 (24%), Positives = 254/545 (46%)
Query: 687 FWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDI-CY-IFLEK 744
F D+ ++R + P + + L+ + + + L E M + D+ Y IF+
Sbjct: 71 FGDMVKSRPF-PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG--ISHDLYTYSIFINC 127
Query: 745 LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPC 804
C S A A++ ++++ G D + S L+ G C K+ S A ++D M++ P
Sbjct: 128 FCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPD 187
Query: 805 LDVSVSLIPQLFRTGRLEKAVALREISLKE--QPLLLFSFHSAFISGFCVTGKAEEASKL 862
+LI LF + +AVAL + ++ QP L+ + ++G C G + A L
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT--YGTVVNGLCKRGDIDLALNL 245
Query: 863 FRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCM 922
M + + ++N +I C+ ++ +L + M K + ++ +Y +L+ +C
Sbjct: 246 LNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCN 305
Query: 923 EGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVT 982
G A L ML + + N++ FN L+ G + +++ +E+ + + PD +T
Sbjct: 306 YGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTIT 365
Query: 983 YNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMR 1042
YN LI GF H + +K MVSK P+ ++ ++I+ C+ + +EL +EM
Sbjct: 366 YNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
Query: 1043 LKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLD 1102
+GLV +++ I +G G A+ Q+V + D + Y L+ C YG+LD
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLD 485
Query: 1103 KAVDLLNIMLKKGSTPNSSSYDSIIS-TCN--KLDPAMDLHAEMMARDLKPSMNTWHVLV 1159
A+ + + K N Y+++I C K+ A DL + +KP + T++ ++
Sbjct: 486 TALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMI 542
Query: 1160 HKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219
LC + EA+ L M + G P Y++++ + + ++EL++ M+ SG+
Sbjct: 543 SGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFV 602
Query: 1220 PDFST 1224
D ST
Sbjct: 603 GDAST 607
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 139/529 (26%), Positives = 245/529 (46%)
Query: 705 SLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQ 764
+L+ L L+ E Q++ ML C + C G A+ V ++++
Sbjct: 188 TLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEA 247
Query: 765 GCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKA 824
G + D Y+ LI G C+ K AFK+ + M K LI L R+++A
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307
Query: 825 VALREISLKEQPLL-LFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQ 883
+ L + +K+ ++ I C + + EA L ++M G+ Y +LI
Sbjct: 308 MDLF-VKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Query: 884 GHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSH 943
C K RELL M+ K L ++ +Y L+ C G + A+++ ELM + S
Sbjct: 367 SLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426
Query: 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYI 1003
N +N L+ S N+ VL+++ E ++LPD VTYN LI G + + S+ +
Sbjct: 427 NTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 1004 AAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR 1063
+ M +G P + S+I LC+ + ++ +L + KG+ + ++ A+ +G
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Query: 1064 GKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY 1123
GK+ EA L++++ K+ +P+++ ++ LI C G+L +A L M+K G P S+
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 1124 DSIISTCNK---LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQ 1180
+I K D A +M++ KP +T+ + C+EGR +AE ++ M +
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRE 665
Query: 1181 LGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLI 1229
G +P YSS++ Y A ++++ M+ +G P T SLI
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXF4 | PP384_ARATH | No assigned EC number | 0.4877 | 0.9263 | 0.9527 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1262 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 6e-16
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 422 PDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCK 471
PDV TYN+LI G K+G + A ++ +EM RGI P++ TY IL+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 2e-11
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 387 PDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436
PD +T+ LI C++G + AL F+E+ RG+ P+V+TY+ LI G+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-10
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 5/258 (1%)
Query: 978 PDEVTYNFLIYGFSKHKDVSSSKYYIAAMV--SKGFNPSNRSLRSVISCLCEVGELGKSL 1035
PD V +N LI + V + +A M + +P + ++ +++ G++ ++
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 1036 ELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRF 1095
E+ Q + + V +G A D + K + PD + + L+
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 1096 CGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKL---DPAMDLHAEMMARDLKPSM 1152
G LDKA ++L K+G + SY S++ C+ A++L+ ++ + L+P++
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719
Query: 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212
+T + L+ LC+ + +A +L M +LG P YS ++ +++ +L+
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 1213 MQQSGYSPDFSTHWSLIS 1230
++ G P+ +
Sbjct: 780 AKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-09
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 328 VAYGYCEKK-DFEDLLSFFTEMK---CTPDVLAGNRIIHTLCSIFG-SKRADL---FVQE 379
+A C +K D++ LS + +MK PD + L + G + D +Q+
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV----FFSALVDVAGHAGDLDKAFEILQD 674
Query: 380 LEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGM 439
G + +++ L+G N + AL + +I S L P V T N+LI+ + +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 440 SKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGL 490
A E+L EM G+ P+ TY ILL + D ++S+ + G+
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 5e-09
Identities = 44/219 (20%), Positives = 84/219 (38%)
Query: 912 SYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDEL 971
+ L++ G V A + +++ N ++ I V G+ + D++
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 972 QENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGEL 1031
++ + PDEV ++ L+ D+ + + +G S S++
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
Query: 1032 GKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNL 1091
K+LEL ++++ L NA+ L +L +A L ++ L P+TI Y L
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
Query: 1092 IKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTC 1130
+ D +DLL+ + G PN I C
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 8e-09
Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 9/315 (2%)
Query: 923 EGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVT 982
+ V A +L+ S FN+L+ SS +I RVL +QE L D
Sbjct: 419 QRAVKEAFRFAKLIRNPTLST----FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL 474
Query: 983 YNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMR 1042
Y LI +K V + MV+ G + + ++I G++ K+ MR
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 1043 LKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV--DKDLVPDTINYDNLIKRFCGYGR 1100
K + D +V NA+ G + A L ++ + PD I L+K G+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 1101 LDKAVDLLNIMLKKGSTPNSSSYDSIISTCNK---LDPAMDLHAEMMARDLKPSMNTWHV 1157
+D+A ++ ++ + Y +++C++ D A+ ++ +M + +KP +
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 1158 LVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217
LV G +A +L + G YSS++ S N KA EL + ++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 1218 YSPDFSTHWSLISNL 1232
P ST +LI+ L
Sbjct: 715 LRPTVSTMNALITAL 729
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-08
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 1083 PDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNK 1132
PD + Y+ LI +C G++++A+ L N M K+G PN +Y +I K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-08
Identities = 84/380 (22%), Positives = 161/380 (42%), Gaps = 41/380 (10%)
Query: 777 IRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVA----LREISL 832
+R LC + A K+L+SM + + D V+ LFR ++AV + +L
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVA----LFRLCEWKRAVEEGSRVCSRAL 113
Query: 833 KEQPLLLFSFHSAFISGFCVTGKAEEASKLF-----RDMLSQGMLLEDEVYNMLIQGHCE 887
P L +A +S F G+ A +F RD+ S +N+L+ G+ +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS---------WNVLVGGYAK 164
Query: 888 ANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVP-WALNLKEL---MLGQNKSH 943
A + L M+ + + ++ ++R C GG+P A +E+ ++
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLR-TC--GGIPDLARG-REVHAHVVRFGFEL 220
Query: 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYI 1003
++ + N L+ + G++ + V D + D +++N +I G+ ++ +
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELF 276
Query: 1004 AAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR 1063
M +P ++ SVIS +G+ E+ + G D V N++ + LS
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 1064 GKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY 1123
G EAE ++ KD V ++ +I + G DKA++ +M + +P+ +
Sbjct: 337 GSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 1124 DSIISTC---NKLDPAMDLH 1140
S++S C LD + LH
Sbjct: 393 ASVLSACACLGDLDVGVKLH 412
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 418 RGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMV 451
+GL PDV TYN+LI G+ + G A E+LDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 9e-07
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSK 992
+++ +N L+ G + ++ +E+++ + P+ TY+ LI G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 1e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 634 NLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCK 677
N LI CKKG V + K+F+ M +RG+ +Y+ L+ LCK
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 425 HTYNSLISGMFKEGMSKHAKEILDEMVNRGITPS 458
TYN+LI G+ K G + A E+ EM RGI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 7e-06
Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 10/218 (4%)
Query: 220 LIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279
L++ G V+RA V+ + + Y + +N + A + DM
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM---- 640
Query: 280 NNLTDLEKDS--FHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKD 337
++ D F +V + + ++ +++ A G++ ++ ++ + K+
Sbjct: 641 -KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 338 FEDLLSFFTE---MKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGI 394
++ L + + +K P V N +I LC +A + E++ G P+ IT+ I
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 395 LIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLIS 432
L+ + R+ + L S+ G+ P++ +
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 9e-06
Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 53/417 (12%)
Query: 302 KIQESRNLVRKAMAFG---LEPSSLVFNEVAYGYCEKKDFE---DLLSFFTEMKCTPDVL 355
K + + V++A F P+ FN + +D + +L E D
Sbjct: 414 KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK 473
Query: 356 AGNRIIHTLCSIFGSKRADLFVQ---ELEHSGFRPDEITFGILIGWTCREGNLRSALVFF 412
+I T C+ G + D + E+ ++G + TFG LI R G + A +
Sbjct: 474 LYTTLIST-CAKSG--KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 413 SEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRG--ITPSLSTYRILLAGYC 470
+ S+ + PD +N+LIS + G A ++L EM I P T L+
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 471 KARQFDEAK-------------------IMVSEMAKSGLIE--LSSLEDPLSKGFMILGL 509
A Q D AK I V+ ++ G + LS +D K G+
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----GV 645
Query: 510 NPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMV 569
P +++ FS + D G+ LD + + + I+ + ++SL+
Sbjct: 646 KP--------DEVFFSAL--VDVAGHAGDLDKAFEILQDARKQGIKLGTVS-YSSLMGAC 694
Query: 570 HARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLD 629
N K AL L +++ ++S +AL+ LC KA +L +M +L +
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE-VLSEMKRLGLCPN 753
Query: 630 QESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHA 686
+ ++L+ A +K G + + G+ N + LC + F K
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLRRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 878 YNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921
YN LI G+C+ + + +L + M ++ + ++ +Y L+ +C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 4e-05
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 978 PDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC 1026
PD VTYN LI G+ K V + M +G P+ + +I LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 7e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 769 DQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAP 803
D + Y+ LI G CK+ K A K+ + M + + P
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGI 455
TYNSLISG K G + A E+ EM +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 61/289 (21%), Positives = 129/289 (44%), Gaps = 27/289 (9%)
Query: 959 GNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSL 1018
G+I + V D + E V +N ++ G++ H + M G + +
Sbjct: 273 GDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 1019 RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR-GKLQEAEHFLDQIV 1077
+I + L + + + G D IV N L S+ G++++A + D++
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-IVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 1078 DKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNK---LD 1134
K+L I+++ LI + +GR KAV++ M+ +G PN ++ +++S C +
Sbjct: 388 RKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 1135 PAMDLHAEMMARDL--KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPTQEMYS 1191
++ + M+ + KP + ++ L +EG EA +M++ PT M++
Sbjct: 444 QGWEIF-QSMSENHRIKPRAMHYACMIELLGREGLLDEA----YAMIRRAPFKPTVNMWA 498
Query: 1192 SVVNRYSLENN--LGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDK 1238
+++ + N LG+ + A + G P+ ++ ++ NL NS+ +
Sbjct: 499 ALLTACRIHKNLELGRLA----AEKLYGMGPEKLNNYVVLLNLYNSSGR 543
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 217 FSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVK 261
++ LI GY G VE A+ +F++M+ RG+ P + Y + I+ L K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 1e-04
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 847 ISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHC 886
I G+C GK EEA KLF +M +G+ Y++LI G C
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 2e-04
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 562 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC 605
+N+LI +G ++ AL L +EM + G + ++ +S L+ GLC
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 60/295 (20%), Positives = 110/295 (37%), Gaps = 40/295 (13%)
Query: 385 FRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAK 444
F T+ L+ ++R + + S G PD + N ++ K GM A+
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 445 EILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGF 504
+ DEM R +L+++ ++ G A + EA + EM D + F
Sbjct: 179 RLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREM-------WEDGSDAEPRTF 227
Query: 505 MILGLNPSA----VRLRRDNDMGFSKVEFFDN--LGNGLYLDT-----DLDEYERKLSKI 553
+++ L SA R + K + + L +D D+++ +
Sbjct: 228 VVM-LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL-IDMYSKCGDIEDARCVFDGM 285
Query: 554 IEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKA 613
E + + +NS++ G + AL L EM G + FS +++ I +
Sbjct: 286 PEKTTVA-WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR--------IFS 336
Query: 614 CTGLLEKMPKLANKLDQESLNL-------LIQACCKKGLVRDGKKIFDGMLQRGL 661
LLE + L + L L+ K G + D + +FD M ++ L
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 6e-04
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 453 RGITPSLSTYRILLAGYCKARQFDEAKIMVSEM 485
+G+ P + TY L+ G C+A + DEA ++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 7e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 457 PSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGL 490
P + TY L+ GYCK + +EA + +EM K G+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI 34
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 9e-04
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 1049 DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFC 1096
D + N + +G +GK++EA +++ + + P+ Y LI C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 94/481 (19%), Positives = 194/481 (40%), Gaps = 60/481 (12%)
Query: 585 MVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKG 644
+VR+G EL + V +AL+ + + + + ++MP+ D S N +I + G
Sbjct: 213 VVRFGFELDVDVVNALIT-MYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENG 267
Query: 645 LVRDGKKIFDGMLQRGLTIENESYT-TLLMSLCK----KGFIKDLHAFWDIAQNRKWLPG 699
+G ++F M R L+++ + T T ++S C+ + +++H + +
Sbjct: 268 ECLEGLELFFTM--RELSVDPDLMTITSVISACELLGDERLGREMHGY---VVKTGFAVD 322
Query: 700 LEDCKSLVECLCHKKLLKESLQLFECM----LVSCPCLRSDICYIFLEKLCVTGFSSNAH 755
+ C SL++ E+ ++F M VS + S L + +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL-----ETY 377
Query: 756 ALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQL 815
AL+E Q + D++ + ++ V K+ + K + + V+ +LI
Sbjct: 378 ALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 816 FRTGRLEKAVAL-REISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLE 874
+ ++KA+ + I K+ + S+ ++ I+G + + EA FR ML L
Sbjct: 435 SKCKCIDKALEVFHNIPEKD----VISW-TSIIAGLRLNNRCFEALIFFRQML--LTLKP 487
Query: 875 DEVYNMLIQGHCEA-NNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWAL--- 930
+ V + C L +E+ + ++R + +G +P AL
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--------------DGFLPNALLDL 533
Query: 931 ----NLKELMLGQNKSH--NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYN 984
Q SH +++ +NIL+ ++ G + + + E+ + PDEVT+
Sbjct: 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 985 FLIYGFSKHKDVSSSKYYIAAMVSK-GFNPSNRSLRSVISCLCEVGELGKSLELSQEMRL 1043
L+ S+ V+ Y +M K P+ + V+ L G+L ++ +M +
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
Query: 1044 K 1044
Sbjct: 654 T 654
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 0.001
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 764 QGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSM 796
+G D + Y+ LI GLC+ + A ++LD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 71/350 (20%), Positives = 128/350 (36%), Gaps = 69/350 (19%)
Query: 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQM 240
C + M + +G E E + ME + + ++ +I GY G ++A+ + M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAV-----SWTAMISGYEKNGLPDKALETYALM 380
Query: 241 RGRGLVP-------FLSCYRVFINHLVKMKVTHLAFRV-CVDMVVMGNNLTDLEKDSFHD 292
+ P LS + V +K+ LA R + VV+ N L ++
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC--- 437
Query: 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYC-EKKDFEDLLSFFTEMKCT 351
C D+ ++ N+ K + + + + G + FE L+ FF +M T
Sbjct: 438 ----KCIDKALEVFHNIPEKDV--------ISWTSIIAGLRLNNRCFEALI-FFRQMLLT 484
Query: 352 PDVLAGNRIIHT----LCSIFGSKR------ADLFVQELEHSGFRP-------------- 387
L N + C+ G+ A + + GF P
Sbjct: 485 ---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 388 -----------DEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436
D +++ IL+ G A+ F+ ++ G+NPD T+ SL+ +
Sbjct: 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 437 EGMSKHAKEILDEM-VNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEM 485
GM E M ITP+L Y ++ +A + EA +++M
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 369 GSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR-GLNPDVHTY 427
GS +LF + +E SG PDE+TF L+ R G + L +F + + + P++ Y
Sbjct: 570 GSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 428 NSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487
++ + + G A +++M ITP + + LL C+ + + + E+A
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-CRIHR----HVELGELAA 680
Query: 488 SGLIELSSLEDPLSKGFMIL 507
+ EL DP S G+ IL
Sbjct: 681 QHIFEL----DPNSVGYYIL 696
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.002
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1079 KDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIM 1111
K L PD + Y+ LI C GR+D+AV+LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 771 MAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAP 803
+ Y+ LI GLCK + A ++ M ++ + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 383 SGFRPDEITFGILI-GWTCREGNLRSALVFFSE 414
G +PD +T+ LI G CR G + A+ E
Sbjct: 1 KGLKPDVVTYNTLIDGL-CRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.004
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 1118 PNSSSYDSIISTC---NKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ 1164
P+ +Y+++I K++ A+ L EM R +KP++ T+ +L+ LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 133/668 (19%), Positives = 257/668 (38%), Gaps = 123/668 (18%)
Query: 563 NSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV----FSALVKGLC----ASRSHIKAC 614
NS ++ + + G L+ AL L++ M QEL + V + AL + LC A + C
Sbjct: 55 NSQLRALCSHGQLEQALKLLESM----QELRVPVDEDAYVALFR-LCEWKRAVEEGSRVC 109
Query: 615 TGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMS 674
+ L P L +L L++ + + G + +F M +R L S+ L+
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMFV----RFGELVHAWYVFGKMPERDLF----SWNVLVGG 161
Query: 675 LCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKL---LKESLQLFECMLVSC- 730
K G+ + CL H+ L ++ + F C+L +C
Sbjct: 162 YAKAGYFDE-----------------------ALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 731 --PCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788
P L G +AH +++ G LD + LI K
Sbjct: 199 GIPDLA-------------RGREVHAH-----VVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 789 AFKMLDSMLDKNMAPCLDVSV--SLIPQLFRTGR----LEKAVALREISLKEQPLLLFSF 842
A + D M P D ++I F G LE +RE+S+ P L+
Sbjct: 241 ARLVFDRM------PRRDCISWNAMISGYFENGECLEGLELFFTMRELSV--DPDLMTI- 291
Query: 843 HSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMI 902
++ IS + G ++ ++ G ++ V N LIQ + + + ++ S M
Sbjct: 292 -TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 903 RKRL---SLSISSY-RNLV--------RWMCMEGGVPWALNLKELM-----LGQ----NK 941
K + IS Y +N + M + P + + ++ LG K
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 942 SHNLIIFNILVFHLMSSGNIFHV----KRVLDELQENELLPDE--VTYNFLIYGFSKHKD 995
H L L+ +++ + + + K + L+ +P++ +++ +I G +
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 996 VSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNA 1055
+ + M+ P++ +L + +S +G L E+ + G+ D + NA
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 1056 IAEGLLSRGKLQEA-EHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114
+ + + G++ A F +KD+V I L+ + +G+ AV+L N M++
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNI----LLTGYVAHGKGSMAVELFNRMVES 583
Query: 1115 GSTPNSSSYDSIISTCNKLDPAMD--LHAEMMARD--LKPSMNTWHVLVHKLCQEGRTTE 1170
G P+ ++ S++ C++ + M + P++ + +V L + G+ TE
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 1171 AERLLISM 1178
A + M
Sbjct: 644 AYNFINKM 651
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1262 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.5 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.31 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.06 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.99 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.56 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.5 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.18 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.15 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.06 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.99 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.8 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.74 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.62 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.57 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.52 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.52 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.31 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.3 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.26 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.24 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.2 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.19 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.15 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.92 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.84 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.46 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.46 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.04 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.98 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.79 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.46 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.32 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.26 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.12 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.09 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.85 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.51 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.5 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.35 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.23 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.09 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.68 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.42 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.55 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.72 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.64 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.37 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.34 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.2 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.2 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.94 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 88.69 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.58 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.54 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.37 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 88.13 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 87.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.95 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.1 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.58 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.4 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.54 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 83.26 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 83.19 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.89 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.5 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.46 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=772.32 Aligned_cols=764 Identities=16% Similarity=0.176 Sum_probs=617.0
Q ss_pred cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 247 PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFN 326 (1262)
Q Consensus 247 p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 326 (1262)
|+..++|.++.+|++.|++++|+.+|++|.+.|+. |+..+|..++.+|.+.+.++.|.+++..+.+.|..++..++|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVP---VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34455555555555555555555555555555555 666677777777777777888888888888888889999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 327 EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLR 406 (1262)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 406 (1262)
.++.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|.++|++|...|+.||..||++++.+|++.++++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000837 407 SALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMA 486 (1262)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 486 (1262)
.+.+++.+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975 688999999999999999999999999888
Q ss_pred HcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHH
Q 000837 487 KSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLI 566 (1262)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li 566 (1262)
+.|..
T Consensus 281 ~~g~~--------------------------------------------------------------------------- 285 (857)
T PLN03077 281 ELSVD--------------------------------------------------------------------------- 285 (857)
T ss_pred HcCCC---------------------------------------------------------------------------
Confidence 76654
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCCh
Q 000837 567 KMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLV 646 (1262)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 646 (1262)
||..||+.++.++++.++ .+.|.+++..|.+.|..||..+||+|+.+|++.|++
T Consensus 286 -------------------------Pd~~ty~~ll~a~~~~g~-~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 286 -------------------------PDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred -------------------------CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 555555555555555554 555555555555555666777777777777777777
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHH
Q 000837 647 RDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 647 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 726 (1262)
++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.
T Consensus 340 ~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~------------------ 397 (857)
T PLN03077 340 GEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS------------------ 397 (857)
T ss_pred HHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH------------------
Confidence 777777777753 4666777777777777777777777777766665555555555554
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 000837 727 LVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLD 806 (1262)
Q Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 806 (1262)
+|++.|+++.|.++++.+.+.|+.|+..
T Consensus 398 ----------------------------------------------------a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 398 ----------------------------------------------------ACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred ----------------------------------------------------HHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 4455555555556666666677778888
Q ss_pred cHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 807 VSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHC 886 (1262)
Q Consensus 807 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 886 (1262)
+++.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 888888888888888888888888754 4778999999999999999999999999986 69999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 000837 887 EANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKR 966 (1262)
Q Consensus 887 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 966 (1262)
+.|+++.+.+++..+++.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5799999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHH-HCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 000837 967 VLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMV-SKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKG 1045 (1262)
Q Consensus 967 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 1045 (1262)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--- 652 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--- 652 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999 58999999999999999999999999999999984
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
+.||..+|++|+.+|...|+.+.|+...+++.+ +.|+ ...|..|...|+..|++++|.++.+.|.+.|+.+++-..+
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 789999999999999999999999999999987 4565 6778888899999999999999999999999988765443
Q ss_pred HHHcc------cCC-----hhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH----HHHCC--
Q 000837 1125 SIIST------CNK-----LDP----AMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLL-IS----MVQLG-- 1182 (1262)
Q Consensus 1125 ~ll~~------~g~-----~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~-~~----~~~~~-- 1182 (1262)
.-+.. .|+ .++ -.++..+|.+.|..|+.... + +. .+ ++-+..+ .. ++..|
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~--~-~~----~~-~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS--M-DE----IE-VSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchh--c-cc----cH-HHHHHHHHhccHHHHHHHhhh
Confidence 33322 222 122 23455667777888874321 1 11 00 1111111 00 01111
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1183 -DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1183 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
.+|.. -..+.+.++..||...|.++.-++..+.+
T Consensus 803 ~~~~~~--~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 803 NTVPGM--PIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred cCCCCC--eEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 12221 13345667777888888888887776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-76 Score=750.74 Aligned_cols=683 Identities=17% Similarity=0.215 Sum_probs=578.3
Q ss_pred CCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 000837 351 TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSL 430 (1262)
Q Consensus 351 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 430 (1262)
.|...++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++..|.+.+.++.|..++..+.+.|+.++...+|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCC
Q 000837 431 ISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLN 510 (1262)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1262)
|.+|++.|+++.|.++|++|.+ ||.++|+++|.+|++.|++++|.++|++|...|..
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~------------------- 184 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR------------------- 184 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------------------
Confidence 9999999999999999999975 68899999999999999999999999999888876
Q ss_pred hhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 000837 511 PSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQ 590 (1262)
Q Consensus 511 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 590 (1262)
||..||+.+ +.+|++.+++..+.+++..|.+.|.
T Consensus 185 --------------Pd~~t~~~l--------------------------------l~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 185 --------------PDVYTFPCV--------------------------------LRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred --------------CChhHHHHH--------------------------------HHHhCCccchhhHHHHHHHHHHcCC
Confidence 777776543 4445555666666666666777777
Q ss_pred CCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHH
Q 000837 591 ELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTT 670 (1262)
Q Consensus 591 ~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 670 (1262)
.|+..++++||.+|++.|+ +++|.++|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~-~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGD-VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CcccchHhHHHHHHhcCCC-HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 7777777777777766666 6666666666642 4666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 000837 671 LLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 750 (1262)
Q Consensus 671 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 750 (1262)
++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~---------------------------------------------------- 321 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAV---------------------------------------------------- 321 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcc----------------------------------------------------
Confidence 6666666666666666666555544333
Q ss_pred cccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHH
Q 000837 751 SSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREI 830 (1262)
Q Consensus 751 ~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 830 (1262)
|..+|+.|+.+|++.|++++|.++|++|
T Consensus 322 ------------------d~~~~n~Li~~y~k~g~~~~A~~vf~~m---------------------------------- 349 (857)
T PLN03077 322 ------------------DVSVCNSLIQMYLSLGSWGEAEKVFSRM---------------------------------- 349 (857)
T ss_pred ------------------chHHHHHHHHHHHhcCCHHHHHHHHhhC----------------------------------
Confidence 3333333333333333333333444333
Q ss_pred HhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCh
Q 000837 831 SLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSI 910 (1262)
Q Consensus 831 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 910 (1262)
. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+.
T Consensus 350 -~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 350 -E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred -C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 2 23566788888888888888899999999988899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 000837 911 SSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF 990 (1262)
Q Consensus 911 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 990 (1262)
.+++.|+++|++.|++++|.++|+.|.+ +|.++|+.|+.+|.+.|+.++|+++|++|.. ++.||..||+.++.+|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 9999999999999999999999998865 5889999999999999999999999999986 5999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 1070 (1262)
++.|+++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .||..+|++|+.+|++.|+.++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 579999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHC
Q 000837 1071 HFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML-KKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~ 1146 (1262)
++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|..++.. .|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-- 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--
Confidence 999999999999999999999999999999999999999999 56999999999999998 899999999999984
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHH
Q 000837 1147 DLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHW 1226 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1226 (1262)
+.|+..+|..|+.+|...|+.+.++...+++.+. .+.+...|..+.+.|...|+|++|.++.+.|.+.|+++++..+|
T Consensus 653 -~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 653 -ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 7899999999999999999999999999999985 24468888899999999999999999999999999998876665
Q ss_pred HHHH
Q 000837 1227 SLIS 1230 (1262)
Q Consensus 1227 ~~l~ 1230 (1262)
.-+.
T Consensus 731 ie~~ 734 (857)
T PLN03077 731 VEVK 734 (857)
T ss_pred EEEC
Confidence 5443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=619.32 Aligned_cols=543 Identities=17% Similarity=0.217 Sum_probs=466.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchH
Q 000837 212 KSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSF 290 (1262)
Q Consensus 212 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~ 290 (1262)
.+...|..++..|++.|++++|+++|++|.+.|+. ++...++.++.++.+.|..++|+.+|+.|.. |+..+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHH
Confidence 35577888999999999999999999999999864 6778888899999999999999999998853 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCCCcccHHHHHHHHHhh
Q 000837 291 HDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM---KCTPDVLAGNRIIHTLCSI 367 (1262)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~li~~~~~~ 367 (1262)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| +..||..+|+.||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000837 368 FGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILS--RGLNPDVHTYNSLISGMFKEGMSKHAKE 445 (1262)
Q Consensus 368 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~A~~ 445 (1262)
|++++|.++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCC
Q 000837 446 ILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFS 525 (1262)
Q Consensus 446 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 525 (1262)
+|++|.+.|+.|+..+|+++|.+||+.|++++|.++|++|.+.|.. |
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~---------------------------------P 647 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK---------------------------------P 647 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------------C
Confidence 9999999999999999999999999999999999999999999987 8
Q ss_pred chhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 000837 526 KVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC 605 (1262)
Q Consensus 526 ~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 605 (1262)
|..+|+ .++.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|+
T Consensus 648 D~~Tyn--------------------------------sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 648 DEVFFS--------------------------------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred CHHHHH--------------------------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888865 667788999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHH
Q 000837 606 ASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLH 685 (1262)
Q Consensus 606 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 685 (1262)
+.|+ +++|.++|++|.+.+..||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 696 k~G~-~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKN-WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcC
Q 000837 686 AFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQG 765 (1262)
Q Consensus 686 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g 765 (1262)
++|.+|.+.|+.||..+|+.++..|. +.++++.++.+.+..-++ +
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~---------------------------------g 819 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS---------------------------------G 819 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---------------------------------c
Confidence 99999999999999999999986543 246666555443321111 0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSA 845 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 845 (1262)
...+.. +..+.|..+|++|.+.|+.||..+|+.++..+++.+..+.+..+++.+...+..|+..+|++
T Consensus 820 ~~~~~n------------~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~ 887 (1060)
T PLN03218 820 RPQIEN------------KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST 887 (1060)
T ss_pred cccccc------------chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH
Confidence 011111 11234666666666666666666666666555556666666666666655555566666666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 846 FISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 846 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+++++.+. .++|..+|++|...|+.|+..
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 66665322 245666666666666666553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=612.33 Aligned_cols=544 Identities=17% Similarity=0.224 Sum_probs=420.1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHH
Q 000837 285 LEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGL-EPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHT 363 (1262)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 363 (1262)
++...|..++..|++.|++++|.++|++|.+.|+ +++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+.+|.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a 446 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSV 446 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 6778899999999999999999999999999885 56788888899999999999999999999964 999999999999
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000837 364 LCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHA 443 (1262)
Q Consensus 364 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 443 (1262)
|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcccCccchhhhhHHHhcCCChhhhhhccccc
Q 000837 444 KEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK--SGLIELSSLEDPLSKGFMILGLNPSAVRLRRDND 521 (1262)
Q Consensus 444 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1262)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~------------------------------ 576 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID------------------------------ 576 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC------------------------------
Confidence 99999999999999999999999999999999999999999986 3444
Q ss_pred cCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 000837 522 MGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALV 601 (1262)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 601 (1262)
||..+|+ .++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|
T Consensus 577 ---PD~vTyn--------------------------------aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 577 ---PDHITVG--------------------------------ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred ---CcHHHHH--------------------------------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 7766654 56777888888888888888888888888888888888
Q ss_pred HHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCH
Q 000837 602 KGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFI 681 (1262)
Q Consensus 602 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 681 (1262)
.+|++.|+ +++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 622 ~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 622 NSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 88888887 88888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHH
Q 000837 682 KDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEEL 761 (1262)
Q Consensus 682 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~ 761 (1262)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~---------------------------------- 746 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK---------------------------------- 746 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------
Confidence 8888888888777777777777777777777777777766666553
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH
Q 000837 762 LQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFS 841 (1262)
Q Consensus 762 ~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 841 (1262)
..|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.+++|.++.+.+.....
T Consensus 747 -~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----- 818 (1060)
T PLN03218 747 -RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----- 818 (1060)
T ss_pred -HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc-----
Confidence 456677777777777777777777777777777777777777777777765443 234555444333221100
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 000837 842 FHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921 (1262)
Q Consensus 842 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 921 (1262)
.......+..++|+.+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.++++++
T Consensus 819 -----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 819 -----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred -----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 000111122344666666666666666666666666555555555555555555554444444555555554442
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC
Q 000837 922 MEGGVPWALNLKELMLGQNKSHN 944 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~~~~~ 944 (1262)
+. .++|..+|++|...|+.|+
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCC
Confidence 11 1334444444444444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=548.20 Aligned_cols=473 Identities=18% Similarity=0.193 Sum_probs=424.4
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC-CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 248 FLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG-NNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFN 326 (1262)
Q Consensus 248 ~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 326 (1262)
+..+|+.++..|.+.|++++|+++|+.|...+ .. |+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~---~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFT---LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 44567777777777777777777777776544 34 778888888888888888888999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 327 EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLR 406 (1262)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 406 (1262)
.++.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000837 407 SALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMA 486 (1262)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 486 (1262)
.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|.++||++|.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975 599999999999999999999999999999
Q ss_pred HcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHH
Q 000837 487 KSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLI 566 (1262)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li 566 (1262)
+.|.. ||..||+ .++
T Consensus 318 ~~g~~---------------------------------pd~~t~~--------------------------------~ll 332 (697)
T PLN03081 318 DSGVS---------------------------------IDQFTFS--------------------------------IMI 332 (697)
T ss_pred HcCCC---------------------------------CCHHHHH--------------------------------HHH
Confidence 99987 8888866 556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCCh
Q 000837 567 KMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLV 646 (1262)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 646 (1262)
.+|++.|++++|.+++.+|.+.|+.||..+|++|+.+|++.|. +++|.++|++|.+ +|..+||+||.+|++.|+.
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPR----KNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCH
Confidence 7788888888888888889888999999999999999999888 9999999998864 5889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHh-cCCCCCcccHHHHHHHHhhhCchHhHHHHHHH
Q 000837 647 RDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQN-RKWLPGLEDCKSLVECLCHKKLLKESLQLFEC 725 (1262)
Q Consensus 647 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 725 (1262)
++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 58999999999999999999999999999886
Q ss_pred HHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh
Q 000837 726 MLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCL 805 (1262)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 805 (1262)
+ +..|+..+|+.|+.+|+..|+++.|..+++++.+.+ +.+.
T Consensus 488 ~--------------------------------------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~ 528 (697)
T PLN03081 488 A--------------------------------------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKL 528 (697)
T ss_pred C--------------------------------------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCC
Confidence 4 356788899999999999999999999988887543 2246
Q ss_pred hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 000837 806 DVSVSLIPQLFRTGRLEKAVALREISLKEQPL 837 (1262)
Q Consensus 806 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 837 (1262)
.+|..+++.|++.|++++|.++++.|.+.|..
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999888765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=541.26 Aligned_cols=561 Identities=15% Similarity=0.197 Sum_probs=433.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHhhhhc-CCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 000837 595 SVFSALVKGLCASRSHIKACTGLLEKMPKLA-NKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLM 673 (1262)
Q Consensus 595 ~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 673 (1262)
.+|+.+|.++.+.+. +++|.++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..|...|+.||..+|+.++.
T Consensus 88 ~~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 344444444444444 444444444444332 334555555555555555666666666666666666666666666666
Q ss_pred HHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCccc
Q 000837 674 SLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSN 753 (1262)
Q Consensus 674 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 753 (1262)
.|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-------------------------- 216 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMW-------------------------- 216 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH--------------------------
Confidence 66666666666666666543 566666666666666666666655555543
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhh
Q 000837 754 AHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLK 833 (1262)
Q Consensus 754 a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 833 (1262)
+.|..|+..+|+.++.++++.|..+.+.+++..+.+.|..||..+++.|+++|++.|++++|.++|+.|..
T Consensus 217 ---------~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 287 (697)
T PLN03081 217 ---------EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287 (697)
T ss_pred ---------HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 45566777888888888888888888888888888889999999999999999999999999999999864
Q ss_pred cCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhH
Q 000837 834 EQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSY 913 (1262)
Q Consensus 834 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 913 (1262)
+|+.+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..++
T Consensus 288 ----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 288 ----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcC
Q 000837 914 RNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKH 993 (1262)
Q Consensus 914 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 993 (1262)
+.|+++|+++|++++|.++|+.|.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999865 699999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHH-CCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 994 KDVSSSKYYIAAMVS-KGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 1072 (1262)
|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999987 699999999999999999999999999998876 5789999999999999999999999999
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHcc-----cCC---------hhHH
Q 000837 1073 LDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS-SYDSIIST-----CNK---------LDPA 1136 (1262)
Q Consensus 1073 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~-----~g~---------~~~A 1136 (1262)
++++.+ +.|+ ..+|..|+..|++.|++++|.+++++|.+.|+....- +|..+-.. .|+ ++..
T Consensus 517 ~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 594 (697)
T PLN03081 517 AEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594 (697)
T ss_pred HHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence 999976 5564 6799999999999999999999999999998754322 22211110 221 3445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHH----HHHCCC--CCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1137 MDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAE---RLLIS----MVQLGD--TPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1137 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~---~l~~~----~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
.++..+|.+.|..|+..... .+.++-. .+... ++..|+ .|... -..+.+.++..||...|.
T Consensus 595 ~~l~~~~~~~gy~~~~~~~~---------~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~-~i~i~knlr~c~dch~~~ 664 (697)
T PLN03081 595 DELMKEISEYGYVAEENELL---------PDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT-PLQITQSHRICKDCHKVI 664 (697)
T ss_pred HHHHHHHHHcCCCCCcchhh---------ccccHHHHHHHHHhccHHHHHHhhCccCCCCC-eEEEecCCEECCCchhhH
Confidence 56677777788888743221 1111111 00110 111111 11111 133556667778888888
Q ss_pred HHHHHHHHcCC
Q 000837 1208 ELMQAMQQSGY 1218 (1262)
Q Consensus 1208 ~~~~~~~~~~~ 1218 (1262)
++.-++..+.+
T Consensus 665 k~~s~~~~r~i 675 (697)
T PLN03081 665 KFIALVTKREI 675 (697)
T ss_pred HHHhhhcceEE
Confidence 88877766543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=496.51 Aligned_cols=870 Identities=13% Similarity=0.056 Sum_probs=414.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
++..+...+..+...|++++|...+.+..+.. |.++..+..++..|...|++++|...|+++.+.++. +...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a 97 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLA 97 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHH
Confidence 44455555555555555555555555555443 445555555555555555555555555555555432 333444445
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
..+...|++++|...+.+. .....+.....+..+...|...|
T Consensus 98 ~~~~~~g~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 98 RAYLLQGKFQQVLDELPGK--------------------------------------TLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHCCCHHHHHHhhccc--------------------------------------ccCCchhhHHHHHHHHHHHHHcC
Confidence 5555555555555555433 21111223333444444444444
Q ss_pred CHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 337 DFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSE 414 (1262)
Q Consensus 337 ~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 414 (1262)
++++|...|+++ ..+.+...+..+...+...|++++|.++++++.+.. +++...+..+...+...|++++|...|++
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444444444444 112223344444444455555555555555444432 23344444444455555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccC
Q 000837 415 ILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELS 494 (1262)
Q Consensus 415 m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 494 (1262)
..+..+ .+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++++.+.++.
T Consensus 219 a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--- 293 (899)
T TIGR02917 219 AIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE--- 293 (899)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---
Confidence 544432 23444444455555555555555555555443221 1122222222333445555555555555443321
Q ss_pred ccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhc
Q 000837 495 SLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHAR 572 (1262)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~ 572 (1262)
....+..++..+...|++++|...+.+.....+... +..++..+...
T Consensus 294 -------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 294 -------------------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342 (899)
T ss_pred -------------------------------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 111111222222233333333333333322222111 23344444555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHH
Q 000837 573 GNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKI 652 (1262)
Q Consensus 573 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 652 (1262)
|++++|...++++.+... . +...+..+...+.+.|++++|.++
T Consensus 343 g~~~~A~~~~~~~~~~~~-~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 343 GRVDEAIATLSPALGLDP-D------------------------------------DPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-C------------------------------------CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555443221 1 333344444444444444444444
Q ss_pred HHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC
Q 000837 653 FDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732 (1262)
Q Consensus 653 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 732 (1262)
|+++.+..+. +...+..+...+...|++++|...+..+..... ........++..+.+.|++++|.++++.+....|.
T Consensus 386 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 463 (899)
T TIGR02917 386 LAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463 (899)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 4444443222 333344444444444444444444444443320 11222333344444445555555555444433222
Q ss_pred CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHH
Q 000837 733 LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLI 812 (1262)
Q Consensus 733 ~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 812 (1262)
+...+..+...+...|++++|...|+++.+.. +.+...+..++
T Consensus 464 ------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 506 (899)
T TIGR02917 464 ------------------------------------NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLA 506 (899)
T ss_pred ------------------------------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 23333334444444444444444444443322 11222333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 000837 813 PQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLR 892 (1262)
Q Consensus 813 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~ 892 (1262)
..+...|++++|.+.++.+....+. +..++..+...+.+.|+.++|...++++...+. .+...+..+...+...|+++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHH
Confidence 4444444444444444444433322 333344444444444444444444444443221 12233344444444444444
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 893 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
+|..+++.+.+.. +.+...+..++..+.+.|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 2233444444444444455555554444444332 1133344455555555555555555555554
Q ss_pred HCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 000837 973 ENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIV 1052 (1262)
Q Consensus 973 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 1052 (1262)
+.. +.+..++..+...+...|++++|..+++.+.+.+ .++...+..+..++...|++++|.+.++.+.+.+ |+..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 431 1234445555555555555555555555555432 2233444444555555555555555555555432 33344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST--- 1129 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--- 1129 (1262)
+..++..+...|++++|...++++.+.. +.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4455555555555555555555555431 1234455555555555555555555555555542 2222222222222
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|+ .+|+++++++.+ ..| ++..+..++.++.+.|++++|...++++++.+ +.++.++..++.++...|++++|.+
T Consensus 817 ~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 817 LKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred cCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 444 555566665554 334 55677889999999999999999999999875 4489999999999999999999999
Q ss_pred HHHHHH
Q 000837 1209 LMQAMQ 1214 (1262)
Q Consensus 1209 ~~~~~~ 1214 (1262)
++++|+
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999886
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=492.71 Aligned_cols=862 Identities=13% Similarity=0.047 Sum_probs=605.2
Q ss_pred cchhhHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 000837 152 FRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVE 231 (1262)
Q Consensus 152 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 231 (1262)
...++++.|+..|+.+....| .+++++..++.++.+.|++++|...+.++.+.+ +++......+...|...|+++
T Consensus 33 ~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 33 LQKNKYKAAIIQLKNALQKDP---NDAEARFLLGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHcCChHhHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHH
Confidence 346788999999999886644 488999999999999999999999999999877 446677888999999999999
Q ss_pred HHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 000837 232 RAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVR 311 (1262)
Q Consensus 232 ~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (1262)
+|+..+..............+..+...+...|++++|...|+++++..+. +...+..+...+...|++++|..+++
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR----SLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999988764445557788999999999999999999999999987754 56678889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH
Q 000837 312 KAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDE 389 (1262)
Q Consensus 312 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 389 (1262)
++.+.. +++...+..+...+...|++++|...|++. ..+.+..++..++..+...|++++|...++.+.+.... +.
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 261 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SP 261 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc
Confidence 998864 667888888999999999999999999998 44556778899999999999999999999999886532 33
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGY 469 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 469 (1262)
..+......+...|++++|...|.++.+.+.. +...+..+...+...|++++|...|+...+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34444455567889999999999999887533 23444555667888999999999999998764 23566778888899
Q ss_pred HHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHH
Q 000837 470 CKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERK 549 (1262)
Q Consensus 470 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 549 (1262)
.+.|++++|...++++.+... .+...+..++..+...|++++|...
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 385 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDP----------------------------------DDPAALSLLGEAYLALGDFEKAAEY 385 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCC----------------------------------CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999887654 4456667777777777777777777
Q ss_pred HHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCC
Q 000837 550 LSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANK 627 (1262)
Q Consensus 550 l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~ 627 (1262)
++++....+... +..+...+...|++++|+..++++.+.... .......++..+...++ +++|..+++.+....+
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~- 462 (899)
T TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQ-FDKALAAAKKLEKKQP- 462 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhCC-
Confidence 777766554333 666667777777777777777777654322 12233344455555555 6666666665554322
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHH
Q 000837 628 LDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLV 707 (1262)
Q Consensus 628 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 707 (1262)
.+..+++.+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.++.+.... +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 24455555566666666666666666665554332 34445555555555666666666665555432 12344455555
Q ss_pred HHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 000837 708 ECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFS 787 (1262)
Q Consensus 708 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~ 787 (1262)
..+.+.|+.++|...++++...+|. +...+..++..+...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQ------------------------------------EIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc------------------------------------chhHHHHHHHHHHHCCCHH
Confidence 5555555555555555555443332 4455566666777777777
Q ss_pred HHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 000837 788 VAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDML 867 (1262)
Q Consensus 788 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 867 (1262)
+|..+++.+.+.. +.+..++..++..+...|++++|+..++.+.+..+. +...+..+...+.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766543 334566666777777777777777777776655443 44556666677777777777777777766
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcch
Q 000837 868 SQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLII 947 (1262)
Q Consensus 868 ~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 947 (1262)
+... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|+.+.... |+..+
T Consensus 663 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 6332 245566666667777777777777777766654 2345556666666677777777777777666653 23355
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 000837 948 FNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCE 1027 (1262)
Q Consensus 948 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 1027 (1262)
+..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+.. +++...+..+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5566667777777777777777766642 2355666666667777777777777777777643 3345566666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
.|+ ++|+.+++++.+.. +.+..++..++..+...|++++|...|+++++.+.. +..++..++.++.+.|++++|.++
T Consensus 817 ~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 777 66777777766642 224556666777777777777777777777765433 566777777777777777777777
Q ss_pred HHHHH
Q 000837 1108 LNIML 1112 (1262)
Q Consensus 1108 ~~~~~ 1112 (1262)
+++|+
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 77664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-24 Score=282.73 Aligned_cols=424 Identities=13% Similarity=0.052 Sum_probs=204.1
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc---cH-----------
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE---DC----------- 703 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~----------- 703 (1262)
..+...|++++|+..|++.++..+. +...+..+...+.+.|++++|+..|++..+.. |+.. .+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHH
Confidence 4455666777777777766665443 56666666666667777777777776666543 2211 11
Q ss_pred -HHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 000837 704 -KSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCK 782 (1262)
Q Consensus 704 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~ 782 (1262)
......+.+.|++++|++.|+++++..|. +...+..+...+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~------------------------------------~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNT------------------------------------DSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHH
Confidence 11233455667777777777776665554 44455555666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC--------chHHhHHHHHHHHhhcC
Q 000837 783 EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL--------LLFSFHSAFISGFCVTG 854 (1262)
Q Consensus 783 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g 854 (1262)
.|++++|++.|+++.+... .+...+..+...+. .++.++|+.+++.+...... .....+..+...+...|
T Consensus 398 ~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 6666666666666655421 12333444444442 34556666555543322100 00112334445555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHH
Q 000837 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE 934 (1262)
Q Consensus 855 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 934 (1262)
++++|++.|++.++.... +...+..+...|.+.|++++|...++.+++.... +...+..+...+.+.++.++|+..++
T Consensus 476 ~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 476 KWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666653221 3344555555666666666666666666554321 23333333334445566666666555
Q ss_pred HHHhCCCCCCcc---------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 935 LMLGQNKSHNLI---------IFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 935 ~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
.+......++.. .+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|++
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543221111100 011223334444555555544441 112223334444444445555555555555
Q ss_pred HHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C
Q 000837 1006 MVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDL--V 1082 (1262)
Q Consensus 1006 m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~ 1082 (1262)
+++. .| +...+..++.+|...|++++|++.++.+.+.. +.+..++..+..++...|++++|.+++++++.... .
T Consensus 629 al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 629 VLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 4442 22 23334444444444555555555555444321 11233344444444445555555555554443211 1
Q ss_pred C---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1083 P---DTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1083 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
| +...+..+...+...|++++|++.|++.+
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11233333444444455555555544443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-24 Score=282.00 Aligned_cols=679 Identities=12% Similarity=0.018 Sum_probs=313.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhH-----
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCY----- 252 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----- 252 (1262)
.+.....+++....++.+.|.+.+.++.... |+++.++..++..+...|+.++|...+++..+..+. +...+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~ 104 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 3445566677778899999999999887664 778999999999999999999999999999987643 22222
Q ss_pred -----------HHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 253 -----------RVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKD-SFHDVVRLLCRDRKIQESRNLVRKAMAFGLEP 320 (1262)
Q Consensus 253 -----------~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 320 (1262)
..+...+.+.|++++|+..|+++++..+. +.. ............|+.++|+..++++.+.. +.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~----~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~ 179 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP----ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PG 179 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC----ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CC
Confidence 12222344455555555555555443321 110 01011111112344555555555544432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHH
Q 000837 321 SSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDE-ITFGILIGWT 399 (1262)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~ 399 (1262)
+...+..+...+...|+.++|+..++++...|.. +...+...++.+...+..|+. ..+...+..+
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~--------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG--------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc--------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 3444444444444445555555554444111100 001111111222221211111 1122222222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHH
Q 000837 400 CREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAK 479 (1262)
Q Consensus 400 ~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 479 (1262)
-....++.|...+.++......|+... ......+...|++++|...|++..+... .+...+..+...|.+.|++++|.
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~ 323 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAV 323 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 222233444444444433322232211 1222334445555555555555554321 13444555555555555555555
Q ss_pred HHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCC
Q 000837 480 IMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMI 559 (1262)
Q Consensus 480 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~ 559 (1262)
..|++..+..+.. +....+..++.. . ...
T Consensus 324 ~~l~~Al~~~p~~--------------------------------~~~~~~~~ll~~----~------~~~--------- 352 (1157)
T PRK11447 324 AQFEKALALDPHS--------------------------------SNRDKWESLLKV----N------RYW--------- 352 (1157)
T ss_pred HHHHHHHHhCCCc--------------------------------cchhHHHHHHHh----h------hHH---------
Confidence 5555554433210 000001000000 0 000
Q ss_pred CChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q 000837 560 PNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQA 639 (1262)
Q Consensus 560 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~ 639 (1262)
........+.+.|++++|+..|+++++ ..+. +...+..+...
T Consensus 353 -~~~~~g~~~~~~g~~~eA~~~~~~Al~------------------------------------~~P~-~~~a~~~Lg~~ 394 (1157)
T PRK11447 353 -LLIQQGDAALKANNLAQAERLYQQARQ------------------------------------VDNT-DSYAVLGLGDV 394 (1157)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------hCCC-CHHHHHHHHHH
Confidence 000122334445555555555555544 2211 33444445555
Q ss_pred HHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC--------CCcccHHHHHHHHh
Q 000837 640 CCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL--------PGLEDCKSLVECLC 711 (1262)
Q Consensus 640 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~ 711 (1262)
+...|++++|++.|+++.+..+. +...+..+...+. .++.++|..+++.+...... -....+..+...+.
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55566666666666665554332 3344444444442 33455555555443221100 00112333444555
Q ss_pred hhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 000837 712 HKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFK 791 (1262)
Q Consensus 712 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~ 791 (1262)
..|++++|++.|+++++..|. +...+..+...|.+.|++++|..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~------------------------------------~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPG------------------------------------SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666666555554 44445555555666666666666
Q ss_pred HHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 000837 792 MLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGM 871 (1262)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 871 (1262)
.++++.+... .+...+..+...+...++.++|+..++.+......++..... ..+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------------~~l----- 571 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------------QRL----- 571 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-------------------HHH-----
Confidence 6666554321 122333333334445556666666555543221111110000 000
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHH
Q 000837 872 LLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNIL 951 (1262)
Q Consensus 872 ~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 951 (1262)
....+......+...|+.++|.++++. .+.+...+..+...+.+.|++++|+..|+.+.+.. +.+...+..+
T Consensus 572 --~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 572 --QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred --hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 000111233344455555555555441 12233444455555555566666666555555542 1244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC--CC---ChhcHHHHHHHH
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF--NP---SNRSLRSVISCL 1025 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~li~~~ 1025 (1262)
+..|...|++++|.+.++...+. .| +..++..+..++...|++++|.+++++++.... .| +...+..+...+
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 66666666666666666655443 22 223344445555556666666666666555311 11 112333345555
Q ss_pred HhcCChhHHHHHHHHHH
Q 000837 1026 CEVGELGKSLELSQEMR 1042 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~ 1042 (1262)
...|++++|++.|+...
T Consensus 722 ~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 722 AQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 56666666666666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-21 Score=241.66 Aligned_cols=683 Identities=12% Similarity=0.037 Sum_probs=454.8
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhcc
Q 000837 462 YRILLAGYC--KARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYL 539 (1262)
Q Consensus 462 ~~~li~~~~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 539 (1262)
+..++.++. ..|++++|+..|++..+..+ .+..++..+...+..
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP----------------------------------~n~~~~~~LA~~yl~ 90 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVP----------------------------------DNIPLTLYLAEAYRH 90 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHH
Confidence 334444432 33999999999999998876 346777888899999
Q ss_pred CCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhCCCc
Q 000837 540 DTDLDEYERKLSKIIEDSMIPN-FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKG--------LCASRSH 610 (1262)
Q Consensus 540 ~~~~~~a~~~l~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--------~~~~~~~ 610 (1262)
.|+.++|...+++.+...+... +..++ ...+++++|..+++++....+. +..++..+... |.+
T Consensus 91 ~g~~~~A~~~~~kAv~ldP~n~~~~~~L---a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q---- 162 (987)
T PRK09782 91 FGHDDRARLLLEDQLKRHPGDARLERSL---AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ---- 162 (987)
T ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHH---HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----
Confidence 9999999999999999888655 33333 2228889999999999885332 23333333333 333
Q ss_pred hHHHHHHHHHhhhhcCCCChHHHHHH-HHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh-cCCHhhHHHHH
Q 000837 611 IKACTGLLEKMPKLANKLDQESLNLL-IQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCK-KGFIKDLHAFW 688 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~ 688 (1262)
.++|.+.++ .....+.|+..+.... ...|.+.|++++|++++.++.+.++. +......|...|.. .++ +.+..++
T Consensus 163 ~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 163 LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 466666666 4444455555555555 88999999999999999999998765 56667777777777 366 7777775
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCcc-cHHH-HHHHHHhcC
Q 000837 689 DIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC-LRSDICYIFLEKLCVTGFSS-NAHA-LVEELLQQG 765 (1262)
Q Consensus 689 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~-~a~~-~l~~~~~~g 765 (1262)
+. ....+...+..+...|.+.|+.++|.+.++++....+. +....+... +.+.+... .|.. +.+++...
T Consensus 240 ~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~~~~~- 311 (987)
T PRK09782 240 SQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQFADN- 311 (987)
T ss_pred ch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhhhhHHH-
Confidence 43 23357788889999999999999999999887765444 333333333 33333221 0111 11111110
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHH--HhcCCHHHHHHHHHHHhhcCCCchHHhH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQL--FRTGRLEKAVALREISLKEQPLLLFSFH 843 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 843 (1262)
-......++..+.+.++++-++++.. ..|..... ..... ...+...++.+.+..+....+. +....
T Consensus 312 ---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l 379 (987)
T PRK09782 312 ---RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPA-NLTRL 379 (987)
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHH
Confidence 11122334677778888886665522 23333322 22222 2346677777777777665333 33334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 000837 844 SAFISGFCVTGKAEEASKLFRDMLSQ-G-MLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMC 921 (1262)
Q Consensus 844 ~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 921 (1262)
--+.....+.|+.++|.++|+..... + ..++.....-++..|.+.+.+....++..-. ..++...-. .
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~------~ 449 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQR------Q 449 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchhH------H
Confidence 44445566788889999988888762 1 2223334457777777776633333222211 111111111 1
Q ss_pred hcCChhhHHHHHHHHHhCC--CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChh
Q 000837 922 MEGGVPWALNLKELMLGQN--KSH--NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVS 997 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 997 (1262)
-.|+..++...++.+...- .++ +...|..+..++.. +++.+|+..+.+.... .|+......+...+...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHH
Confidence 1233333333333222211 123 56678888888876 8888899988887765 466555444555567899999
Q ss_pred HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 998 SSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 998 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
+|...|+++... .|+...+..+..++.+.|+.++|...++...+.. ++....+..+...+...|++++|+..+++.+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998663 4444556667778889999999999999998863 2234444444455556699999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CH
Q 000837 1078 DKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SM 1152 (1262)
Q Consensus 1078 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~ 1152 (1262)
+ ..|+...|..+..++.+.|++++|++.+++.++. .|+...+...+.. .|++++|++.+++..+ +.| ++
T Consensus 604 ~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~ 677 (987)
T PRK09782 604 N--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP 677 (987)
T ss_pred H--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 8 4677888999999999999999999999999986 5665544333332 8999999999999987 667 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
..+..++.++...|++++|+..++++++. .|+ ..+....++......+++.|.+.+++... +.|+.. ...-++.
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~-a~~~~g~ 752 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS-IGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch-hccccch
Confidence 88999999999999999999999999985 454 57777889999999999999999999887 566655 4444444
Q ss_pred hhccc
Q 000837 1232 LRNSN 1236 (1262)
Q Consensus 1232 l~~~~ 1236 (1262)
++...
T Consensus 753 ~~~~~ 757 (987)
T PRK09782 753 MSTAN 757 (987)
T ss_pred Hhhhc
Confidence 44433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-21 Score=235.84 Aligned_cols=680 Identities=11% Similarity=-0.022 Sum_probs=369.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHH
Q 000837 401 REGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKI 480 (1262)
Q Consensus 401 ~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 480 (1262)
..|++++|+..|+..++..+. +...+..|...|.+.|+.++|...+++..+.. |+...|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHH
Confidence 349999999999999888655 47888889999999999999999999998863 5544444444333 88899999
Q ss_pred HHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhh-----ccCCCHHHHHHHHHHHhh
Q 000837 481 MVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGL-----YLDTDLDEYERKLSKIIE 555 (1262)
Q Consensus 481 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~l~~~~~ 555 (1262)
+++++.+..+ .+...+..+.... ....+.++|.+.++ ...
T Consensus 130 ~ye~l~~~~P----------------------------------~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~ 174 (987)
T PRK09782 130 TVEELLAQQK----------------------------------ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DAT 174 (987)
T ss_pred HHHHHHHhCC----------------------------------CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-Hhh
Confidence 9999998875 3345555444440 11233355555555 333
Q ss_pred cCCCCC----hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChH
Q 000837 556 DSMIPN----FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQE 631 (1262)
Q Consensus 556 ~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 631 (1262)
..+.|. .......|.+.|++++|+..+.++.+.++. +......|-..|...-+. +++..+++. ....+..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~ 248 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQ 248 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHH
Confidence 334333 334478899999999999999999987644 344456666666663221 666666443 2234888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHhhcCCC-CCHhhHHHHHHHHHhcCCHh-hHHHHHHHHHhcCCCCC-cccHHHHHH
Q 000837 632 SLNLLIQACCKKGLVRDGKKIFDGMLQRGLT-IENESYTTLLMSLCKKGFIK-DLHAFWDIAQNRKWLPG-LEDCKSLVE 708 (1262)
Q Consensus 632 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~-~~~~~~li~ 708 (1262)
.+..+...|.+.|+.++|.++++++...... |...+|..+ +.+.+... .|..-|.. ...++ ......++.
T Consensus 249 l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 249 SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHH
Confidence 8899999999999999999999988655333 455555444 34444432 11111111 01111 112233466
Q ss_pred HHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 000837 709 CLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSV 788 (1262)
Q Consensus 709 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~ 788 (1262)
.+.+.+.++.+.++. ...|... .. ..+... ....+...+
T Consensus 322 ~~~~~~~~~~~~~~~----~~~~~~~--~~--~~r~~~---------------------------------~~~~~~~~~ 360 (987)
T PRK09782 322 VLLKEGQYDAAQKLL----ATLPANE--ML--EERYAV---------------------------------SVATRNKAE 360 (987)
T ss_pred HHHhccHHHHHHHHh----cCCCcch--HH--HHHHhh---------------------------------ccccCchhH
Confidence 677777777555442 2222211 11 111111 111233344
Q ss_pred HHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--CCchHHhHHHHHHHHhhcCCHHHHHHHHHHH
Q 000837 789 AFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--PLLLFSFHSAFISGFCVTGKAEEASKLFRDM 866 (1262)
Q Consensus 789 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 866 (1262)
+...+..|.... +-+......+.....+.|+.++|..+|+...... ...+.....-++..|.+.+......++..-.
T Consensus 361 ~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 361 ALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 444444443321 1133333333444445555555555555543310 1112222334444444444422111111110
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-cc--ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 000837 867 LSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK-RL-SL--SISSYRNLVRWMCMEGGVPWALNLKELMLGQNKS 942 (1262)
Q Consensus 867 ~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 942 (1262)
..++...- +.-.|+..++.......... +. ++ +...+..+..++.. ++.++|+..+.......
T Consensus 440 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 440 ----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred ----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 00111111 11122222222222222211 01 12 33444444444444 45555555555444432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHH
Q 000837 943 HNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSV 1021 (1262)
Q Consensus 943 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 1021 (1262)
|+......+...+...|++++|...|+++... .|+...+..+...+.+.|++++|...+++.++.. |+. ..+..+
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~L 582 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWL 582 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHH
Confidence 22222222233334566666666666665443 2333344455555666666666666666666532 322 122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGR 1100 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 1100 (1262)
...+.+.|++++|+..+++..+. .|+...+..+..++.+.|++++|+..|++.++. .|+ ...++.+..++...|+
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 22333446677777776666653 345666666666667777777777777776663 343 5566666666666777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 000837 1101 LDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEGRTTEAERLL 1175 (1262)
Q Consensus 1101 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~l~ 1175 (1262)
.++|++.+++.++. .|+......-+.. .|++++|...+++..+ +.|+ ..+....+....+..+++.|.+-+
T Consensus 659 ~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 659 IAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777777666664 3433322111111 6677777777777765 5563 356667777777777888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1176 ISMVQLGDTPTQEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1176 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 1203 (1262)
++... +.|+..+....+.++...+++
T Consensus 735 ~r~~~--~~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 735 GRRWT--FSFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHhh--cCccchhccccchHhhhcccc
Confidence 77766 456555666666666666554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-19 Score=207.33 Aligned_cols=573 Identities=13% Similarity=0.091 Sum_probs=365.3
Q ss_pred hHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHH
Q 000837 611 IKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDI 690 (1262)
Q Consensus 611 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 690 (1262)
++.|.+.|..+....+. +.-.+-.=.......|++..|+.+|..++...+.--+...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 45555555555554332 22222222222345566666666666654432221112222233455566666666666666
Q ss_pred HHhcCCCC-CcccHHHHHHHH---hhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCC
Q 000837 691 AQNRKWLP-GLEDCKSLVECL---CHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGC 766 (1262)
Q Consensus 691 m~~~~~~p-~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~ 766 (1262)
..+.+ | ++.++..|...- .....+..+++++..+-..++.
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---------------------------------- 268 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---------------------------------- 268 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC----------------------------------
Confidence 66533 3 111111111111 1112233344444443333332
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH
Q 000837 767 NLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMA--PCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS 844 (1262)
Q Consensus 767 ~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 844 (1262)
++...+.|...|.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+.....+...+..+-
T Consensus 269 --nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 --NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred --CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 5566677777777777777777777776654211 112346667777777777777777777766654443244445
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCccChhhHHHHHHHH
Q 000837 845 AFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEAN----NLRKVRELLSAMIRKRLSLSISSYRNLVRWM 920 (1262)
Q Consensus 845 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 920 (1262)
-+...|.+.|+.+.+...|+....... .+..|...+...|...+ ..++|..++....+.- ..+...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 566777777888888877777776331 13445555655565553 4456666666655543 23455555555554
Q ss_pred HhcCChhhHHHHHHHH----HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHh------hHHHHH
Q 000837 921 CMEGGVPWALNLKELM----LGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQEN---ELLPDEV------TYNFLI 987 (1262)
Q Consensus 921 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~------~~~~li 987 (1262)
.. ++.-.++..|..+ ...+..+.+...|.+.......|+++.|...|...... ...+|.. +-..+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43 3333335555433 34455567788899999999999999999999887765 2233332 222334
Q ss_pred HHhhcCCChhHHHHHHHHHHHCCCCCChhcHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 988 YGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR-SVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 988 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
...-..++.+.|.+.|..+++. .|...... .++......+...+|...+.++.+. -..++..+..+.+.+.+..++
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhh
Confidence 4555667999999999999984 45543322 2222223347888999999999875 345788899999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCCHhHHHHHHHHHH------------hcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHcc
Q 000837 1067 QEAEHFLDQIVDK-DLVPDTINYDNLIKRFC------------GYGRLDKAVDLLNIMLKKGSTPNSSSYDS----IIST 1129 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----ll~~ 1129 (1262)
..|..-|+...++ ...+|+.+...|.+.|. ..+..++|+++|.+.++. .|......- ++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhh
Confidence 9999988777654 23367777777777663 345678899999988875 455544322 2223
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL-GDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
+|++.+|.++|.++.+. ......+|-+++++|..+|++-.|+++|+...+. ....++.+...|++++...|++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa-~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHH-HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999984 3345678999999999999999999999999864 234468899999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
.+.++.. ..|.+.+....++-+.
T Consensus 738 ~ll~a~~--~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 738 ALLKARH--LAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHH--hCCccchHHhHHHHHH
Confidence 9999988 7898887665555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-18 Score=198.66 Aligned_cols=421 Identities=14% Similarity=0.081 Sum_probs=233.7
Q ss_pred HhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000837 531 DNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARG----NLKAALLLVDEMVRWGQELSLSVFSALVKGL 604 (1262)
Q Consensus 531 ~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 604 (1262)
.-++..+...|+++.+...|+++....+... ...|...|...+ ..+.|..++.+..+.- ..|...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 3444555555555555555555555444333 222222233222 3455555555554432 12333443333333
Q ss_pred HhCCCchHHHHHHHHHh----hhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc---CCCCCH------hhHHHH
Q 000837 605 CASRSHIKACTGLLEKM----PKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR---GLTIEN------ESYTTL 671 (1262)
Q Consensus 605 ~~~~~~~~~a~~l~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~~~~~l 671 (1262)
.... ...+...+..+ ...+..+..+..|.+...+...|.++.|...|...... ...++. .+--.+
T Consensus 425 e~~d--~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 425 EQTD--PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HhcC--hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 2222 11223333322 22333456777788888888888888888888777654 122222 122233
Q ss_pred HHHHHhcCCHhhHHHHHHHHHhcCCCCCc-ccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 000837 672 LMSLCKKGFIKDLHAFWDIAQNRKWLPGL-EDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGF 750 (1262)
Q Consensus 672 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 750 (1262)
..++-..++++.|.+.|..++... |+- ..|..+.......+...+|...+..++..+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~------------------- 561 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS------------------- 561 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-------------------
Confidence 444445556666666666665542 321 2222222222233445555555555443322
Q ss_pred cccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhcHHhHHHHHHh------------
Q 000837 751 SSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN-MAPCLDVSVSLIPQLFR------------ 817 (1262)
Q Consensus 751 ~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------ 817 (1262)
.++..+..+...+.+...+..|..-|+...+.- ..+|..+...|.+.|..
T Consensus 562 -----------------~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 562 -----------------SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred -----------------CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 245555556667777777777777666665432 22466666666665542
Q ss_pred cCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 000837 818 TGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVREL 897 (1262)
Q Consensus 818 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 897 (1262)
.+..++|+++|.+++...|. |..+-|-+.-.++..|++.+|..+|.+..+.... ...+|-.+.++|...|++..|+++
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHH
Confidence 24567788888888777666 6777777777788888888888888888775432 344667778888888888888888
Q ss_pred HHHHHHC-CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000837 898 LSAMIRK-RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL 976 (1262)
Q Consensus 898 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 976 (1262)
|+...+. ....+..+..-|..++.+.|.+.+|.+.........+....+.+|..+... ++-...++ ..
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k----------kla~s~lr-~~ 771 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK----------KLAESILR-LE 771 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH----------HHHHHHHh-cc
Confidence 8877766 334566677778888888888888887777766654443444444333221 11111111 11
Q ss_pred CCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 977 LPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 977 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
++ |...+. ...+..+.|.++|..+...+-
T Consensus 772 k~---t~eev~---~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 772 KR---TLEEVL---EAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cc---cHHHHH---HHHHHHHHHHHHHHHHHhcCC
Confidence 11 222221 223457889999999988543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-21 Score=203.95 Aligned_cols=446 Identities=16% Similarity=0.158 Sum_probs=355.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 773 YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 773 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
...|.+-..+.|++++|++.-...-..+ +.+....-.+-..+....+.+....--....+..+. -..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 4456666778899999988766655443 223334444455666666676665554444444433 56678889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhH-HHHHHHHHhcCChhhHH
Q 000837 853 TGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSY-RNLVRWMCMEGGVPWAL 930 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~ 930 (1262)
.|+.++|+..++.+.+. +| ....|-.+..++...|+.+.|.+.|.+.++.+ |+.... ..+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999984 44 34578888889999999999999999988863 444433 33455555679999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhcCCChhHHHHHHHHHHHC
Q 000837 931 NLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-EVTYNFLIYGFSKHKDVSSSKYYIAAMVSK 1009 (1262)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 1009 (1262)
..|.+..+..+ .-.+.|..|...+...|+...|+..|++..+. .|+ ...|..|...|...+.++.|+..|.+...
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 99988887632 24678999999999999999999999998874 455 36788899999999999999999999887
Q ss_pred CCCCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 000837 1010 GFNPS-NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TI 1086 (1262)
Q Consensus 1010 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 1086 (1262)
..|+ ...+..+...|..+|.+|-|+..++..++. .|+ +..|+.|.+++-..|++.+|...+++.+. +.|+ ..
T Consensus 281 -lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~had 355 (966)
T KOG4626|consen 281 -LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHAD 355 (966)
T ss_pred -cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHH
Confidence 4565 455666777888999999999999999984 666 88999999999999999999999999998 4565 77
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHcccCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSIISTCNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHK 1161 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 1161 (1262)
+.+.|..+|...|..++|..+|....+- .|.... ...++...|++++|+..|++.+. +.|+ .+.|+.++..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchH
Confidence 8999999999999999999999998884 454332 23333339999999999999996 8895 5789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhccccccc
Q 000837 1162 LCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1162 ~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
|-..|+.+.|++-+.+++. +.|. ......|+.+|...|+..+|++.|+..+. ++||++..+..+.-+.+---.|.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 9999999999999999998 5676 67778999999999999999999999999 89999988887777666544444
Q ss_pred c
Q 000837 1241 N 1241 (1262)
Q Consensus 1241 ~ 1241 (1262)
+
T Consensus 508 D 508 (966)
T KOG4626|consen 508 D 508 (966)
T ss_pred c
Confidence 4
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-20 Score=198.35 Aligned_cols=407 Identities=13% Similarity=0.114 Sum_probs=323.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH
Q 000837 777 IRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA 856 (1262)
Q Consensus 777 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 856 (1262)
-.++.+..+++.....-....+.+ +.-..+|..+.+.+-..|++++|+..++.+.+..++ .+..|..+..++...|+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCC
Confidence 344555556666555444444443 234678888889999999999999999999887666 677888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHH
Q 000837 857 EEASKLFRDMLSQGMLLEDEVYNM-LIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKEL 935 (1262)
Q Consensus 857 ~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 935 (1262)
+.|.+.|.+.++ +.|+.....+ +...+...|++++|...+.+.++... --...|..|.-.+...|+.-.|++-|++
T Consensus 167 ~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 167 ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHH
Confidence 999999999988 5576654433 33444568899999999998888643 2345788888888899999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC
Q 000837 936 MLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-EVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS 1014 (1262)
Q Consensus 936 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 1014 (1262)
..+.++. -...|-.|...|-..+.+++|+..+.+.... .|+ ...+..+...|...|++|.|+..|++.++. .|+
T Consensus 244 AvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~ 318 (966)
T KOG4626|consen 244 AVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN 318 (966)
T ss_pred hhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC
Confidence 8876322 3456888999999999999999999888764 455 456677777788999999999999999984 454
Q ss_pred -hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHH
Q 000837 1015 -NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNL 1091 (1262)
Q Consensus 1015 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 1091 (1262)
...|+.|..++-..|+..+|...+.+.... .|+ ....+.|.++|...|.+++|..+|....+ +.|. ...++.|
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNL 394 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNL 394 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhH
Confidence 568999999999999999999999999885 344 77889999999999999999999999988 6777 6789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 000837 1092 IKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1092 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 1166 (1262)
...|-..|++++|+..|++.+. +.|....-..-+.. .|+.+.|+..|.+.+. ++| -.+..+.|+.+|-..|
T Consensus 395 a~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccC
Confidence 9999999999999999999987 46765432222222 8999999999999986 778 4578899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 000837 1167 RTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 1203 (1262)
+..+|++-++.+++ ++|| +..|..++..+.-..+|
T Consensus 471 ni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 471 NIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred CcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999998 5666 66666666655444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-16 Score=176.10 Aligned_cols=954 Identities=13% Similarity=0.072 Sum_probs=482.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhH
Q 000837 173 GFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCY 252 (1262)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 252 (1262)
|..++.-+|..++.-++..|+.+.|- +|..|.-+.++ .+..+|+.++.+..++++.+.+- .|.+.+|
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp-v~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP-VREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc-ccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 33344456666666666666666665 55555544432 24456666666666666655543 4556666
Q ss_pred HHHHHHHHhcCchhHHHHHHHH-HHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 000837 253 RVFINHLVKMKVTHLAFRVCVD-MVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAM-AFGLEPSSLVFNEVAY 330 (1262)
Q Consensus 253 ~~l~~~l~~~~~~~~A~~~~~~-m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~ 330 (1262)
..++.+|...|+... ++..++ |.. ++..+...|-...-..++-.+. ..++-||.. .++.
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~---------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLES---------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHH---------------HHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 666666666666554 222222 211 1112222332222222222211 112223333 2333
Q ss_pred HHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHH
Q 000837 331 GYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGF-RPDEITFGILIGWTCREGNLRSAL 409 (1262)
Q Consensus 331 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~ 409 (1262)
-....|-++.+++++..++...-..+.-.+++-..... .-..++. .|.+.+. .|+..+|..++..-...|+++-|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl-~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLL-NMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHH-HHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 44556667777777776621110001111122211111 1122222 2332222 489999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 000837 410 VFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 410 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 489 (1262)
.++.+|.+.|+.-+.+-|..|+-+ .++..-+..++..|.+.|+.|+..|+..-+-.+..+|....+.+...-- .|
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--hg 299 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--HG 299 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--hh
Confidence 999999999999999888888877 7888889999999999999999999988777776666533332221110 00
Q ss_pred CcccCccchhhhhHHHhcCCC----------hhhh-hhccccccCCCch-hhHHhhhhhhccCCCHHHHHHHHHHHhhcC
Q 000837 490 LIELSSLEDPLSKGFMILGLN----------PSAV-RLRRDNDMGFSKV-EFFDNLGNGLYLDTDLDEYERKLSKIIEDS 557 (1262)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~ 557 (1262)
....+..+ ...|.. ...+ .+++..-.+..-. ..|...... .-.|+-++..++...+....
T Consensus 300 ------~tAavrsa-a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 300 ------FTAAVRSA-ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ------hhHHHHHH-HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCc
Confidence 00111111 111100 0000 0111111111111 222222222 22455555555555544322
Q ss_pred CC--CC----hHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHh----hhhc
Q 000837 558 MI--PN----FNSLIKMVHARGNLKAALLLVD--EMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM----PKLA 625 (1262)
Q Consensus 558 ~~--~~----~~~li~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~----~~~~ 625 (1262)
.. ++ |..++.-|..+-+......++. +.++. ..+....-.+........ ...+.+-+... ....
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~lr--kns~lr~lv~Lss~Eler~ 447 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENLR--KNSFLRQLVGLSSTELERS 447 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHhC--cchHHHHHhhhhHHHHhcc
Confidence 11 11 4444444433222111111111 11111 001111111111111110 11111111111 1111
Q ss_pred CCC-------ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC--C
Q 000837 626 NKL-------DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK--W 696 (1262)
Q Consensus 626 ~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~ 696 (1262)
+.+ -....+.++-.++..-+..+++..-+.....-+ ...|..||..++...+.+.|..+..+..... +
T Consensus 448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~ 524 (1088)
T KOG4318|consen 448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESI 524 (1088)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhh
Confidence 111 223345566667666666666655444433211 1578899999999999999999988876543 3
Q ss_pred CCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHH
Q 000837 697 LPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCL--RSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYS 774 (1262)
Q Consensus 697 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~ 774 (1262)
.-|..-+..+.+.+.+.+....+..++..+.+.-... ....++.++...+..|+.+...++.+-+...|+..+ .
T Consensus 525 ~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----g 600 (1088)
T KOG4318|consen 525 HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----G 600 (1088)
T ss_pred hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----c
Confidence 3466678888888999999999999988887743322 245666777788888888888888888777765442 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHh--cCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 775 HLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFR--TGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 775 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
.++....+.++...|.+.++....+ .+|.+.....+...+.+ ..+++++..+-.. +..|.+
T Consensus 601 Pl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~----------------iq~f~k 663 (1088)
T KOG4318|consen 601 PLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIP----------------IQKFEK 663 (1088)
T ss_pred cceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcch----------------hHHHHh
Confidence 4555556667777777666655433 23333333333322221 1122222111100 111333
Q ss_pred cCCHHHHHHHH---------------------------HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 853 TGKAEEASKLF---------------------------RDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 853 ~g~~~~A~~~~---------------------------~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
.|+..+|-++. +.+.+.| ...-++..|.+.|+++.|..+|.++.
T Consensus 664 ~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q--- 734 (1088)
T KOG4318|consen 664 LGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ--- 734 (1088)
T ss_pred cccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---
Confidence 33333333332 2222222 22337788888899999999888776
Q ss_pred CccChhhHHHHHHHHHhcC---ChhhHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 906 LSLSISSYRNLVRWMCMEG---GVPWALNLKELMLGQN--KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE 980 (1262)
Q Consensus 906 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 980 (1262)
+.|+..+...|++.+.+.. ++.++...-++..+.. .+.+...|.--+....+....+.|.++|.+..+....-+.
T Consensus 735 V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 735 VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTA 814 (1088)
T ss_pred CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcH
Confidence 5677777777777666543 3444444444444332 1223333444344444455556788889888887666667
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE-LSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.++.-.+.++.... ..|...+. .|.......-+.+|..+.+.-.+.+|.. ++. | +....+..
T Consensus 815 d~ls~f~k~L~~nd--~~aa~sha----~Ges~~~l~tsRli~~llRrlgl~EA~~~lLg--------P---vv~~~L~k 877 (1088)
T KOG4318|consen 815 DELSDFLKCLVKND--QLAAQSHA----SGESSKELLTSRLINILLRRLGLAEALSALLG--------P---VVRKFLSK 877 (1088)
T ss_pred HHHHHHHHHHHhcC--HHHHHhcc----cccchhhhhhHHHHHHHHHHhhHHHHHHHHHh--------H---HHHHHHHH
Confidence 77777777766554 22222221 2443333333445666666666666666 222 2 33333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhH
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCG----YGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDP 1135 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~ 1135 (1262)
+.-.|+++.-..+- .+.. - +...++..-..++. .+....-...+-+.++....|+..++..-....+....
T Consensus 878 la~~gdve~~qr~~-~qln--~--~e~r~~l~~~lfr~~n~laq~~~~f~~~~ae~i~~~~t~e~~t~~~q~f~~~~~~~ 952 (1088)
T KOG4318|consen 878 LACPGDVEALQRHC-LQLN--T--DEARMNLQFVLFRGSNFLAQSRMSFAMHFAELISMRKTEEAETFCDQLFHKVDPND 952 (1088)
T ss_pred ccCCccHHHHHHHH-HHhC--C--cHHhHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhhchhhhHhhHHhccccChHH
Confidence 44444443322222 2221 1 11122211111111 11111111222223333345666666665555333222
Q ss_pred HHHHHHHHHH------CCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH--HCCC-CC--CHHHHHHHHHHHHhcC
Q 000837 1136 AMDLHAEMMA------RDLKPSMNT---WHVLVHKLCQEGRTTEAERLLISMV--QLGD-TP--TQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1136 A~~~~~~~~~------~~~~p~~~~---~~~l~~~~~~~g~~~~A~~l~~~~~--~~~~-~p--~~~~~~~l~~~~~~~g 1201 (1262)
.+..+..|.+ ..+.|.... .+.+...+...|+-..+..+++... ..++ .+ ...+|..++..++..|
T Consensus 953 ileal~e~v~~~sl~ae~~a~qf~l~~p~~~l~k~l~s~Gke~a~r~lldl~ri~~~~vlrt~reQ~aYdlL~~~~v~~~ 1032 (1088)
T KOG4318|consen 953 ILEALREMVKETSLKAESVADQFMLDFPALCLRKLLLSDGKEVAQRMLLDLLRICDTRVLRTTREQKAYDLLSEYGVELR 1032 (1088)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhcccchHHHHHHHhhhcccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Confidence 3333333321 123332111 2445555666677666555555222 1111 22 2458999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
|+++|..+|+.+.+...+.+.. +..-+..+.+
T Consensus 1033 d~e~Ak~lla~liak~~kls~~-fL~rl~qlL~ 1064 (1088)
T KOG4318|consen 1033 DYEEAKNLLAALIAKHSKLSKK-FLFRLNQLLN 1064 (1088)
T ss_pred chHHHHHHHHHHHhhcchhhHH-HHHhHHHHHH
Confidence 9999999999999976554444 3333444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=198.08 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=255.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccC---hhhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF---LSCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 257 (1262)
.+..+..+...|++++|...|.++.+.. |++..++..++..|...|++++|+..++.+...+..+. ...+..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4444667788899999999999999876 66788999999999999999999999999987643221 357888999
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS----LVFNEVAYGYC 333 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~ 333 (1262)
.|.+.|+++.|+.+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 46778999999999999999999999999987533322 24566778889
Q ss_pred hcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 000837 334 EKKDFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVF 411 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 411 (1262)
+.|++++|...|+++ ...| +...+..+...+++.|++++|.++|+++.+.+......+++.++.+|++.|++++|...
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 3334 45678889999999999999999999999764333356788999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHc
Q 000837 412 FSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCK---ARQFDEAKIMVSEMAKS 488 (1262)
Q Consensus 412 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 488 (1262)
++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999874 56666788999999999999999999999886 6899999999988876 56899999999999987
Q ss_pred CCc
Q 000837 489 GLI 491 (1262)
Q Consensus 489 ~~~ 491 (1262)
++.
T Consensus 348 ~~~ 350 (389)
T PRK11788 348 QLK 350 (389)
T ss_pred HHh
Confidence 765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-16 Score=188.58 Aligned_cols=424 Identities=12% Similarity=0.018 Sum_probs=266.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++..++..+. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3445667778888888888888888764 456677888888888888888888888888877655 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHH
Q 000837 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALN 931 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 931 (1262)
..|++++|+..|..+...+...+. ....++..+.. ..+.......++... ++...+..+.. +........+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 888888888888776553322121 11122211111 122222333333221 12222222222 222111222221
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHhhcCCChhHHHHHHHHH
Q 000837 932 LKELMLGQNKSHNLIIFNILVFHL---MSSGNIFHVKRVLDELQENE-LLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAM 1006 (1262)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m 1006 (1262)
-+....+.... ....+..+...+ ...+++++|.+.|++..+.+ ..| +...|..+...+...|++++|+..|++.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111111000 111111111111 22467888888888887754 233 3456677777777888888888888888
Q ss_pred HHCCCCCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 000837 1007 VSKGFNPS-NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD- 1084 (1262)
Q Consensus 1007 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~- 1084 (1262)
++. .|+ ...|..+..++...|++++|+..++++.+.. +.+..+|..+...+...|++++|+..|++.++. .|+
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~ 432 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDF 432 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccC
Confidence 874 454 4466677777888888888888888887752 334778888888888888888888888888874 444
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH--HHcc-cCChhHHHHHHHHHHHCCCCCCH-H------
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS-SSYDS--IIST-CNKLDPAMDLHAEMMARDLKPSM-N------ 1153 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~--ll~~-~g~~~~A~~~~~~~~~~~~~p~~-~------ 1153 (1262)
...+..+..++.+.|++++|+..+++.++. .|+. ..+.. .+.. .|++++|++.|++... +.|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~ 508 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHH
Confidence 667777888888888888888888888774 3332 22222 2222 7888888888888876 33421 1
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1154 T-WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1154 ~-~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
. +......+...|++++|+++++++++.. +.+..++..+++.+...|++++|++.++++.+.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 1111222334688888888888888753 334567778888888888888888888888773
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-15 Score=171.12 Aligned_cols=552 Identities=15% Similarity=0.126 Sum_probs=282.2
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 000837 375 LFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRG 454 (1262)
Q Consensus 375 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 454 (1262)
.++-.|...|+.|+.+||..+|..||..|+.+.|- +|.-|.-+...-....++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46778888999999999999999999999999998 8998887777778889999999999999988877
Q ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhh
Q 000837 455 ITPSLSTYRILLAGYCKARQFDEAKIMVSE-MAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNL 533 (1262)
Q Consensus 455 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 533 (1262)
.|...||..|+.+|...|++.. .+..++ |.... ..++..|....... . ...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~------------~sfs~~Gvgs~e~~-------------f-l~k 131 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESIN------------QSFSDHGVGSPERW-------------F-LMK 131 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHH------------hhhhhhccCcHHHH-------------H-Hhh
Confidence 5888999999999999998765 222222 22111 11112221111110 0 000
Q ss_pred hhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCchH
Q 000837 534 GNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWG-QELSLSVFSALVKGLCASRSHIK 612 (1262)
Q Consensus 534 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~ 612 (1262)
+. ...+..|+-...+.-....|-++.+++++..+.... ..|..+ +++.......+++
T Consensus 132 ~~------------------c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpve 189 (1088)
T KOG4318|consen 132 IH------------------CCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVE 189 (1088)
T ss_pred cc------------------cCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHH
Confidence 00 011122222233333444455555555554442211 111111 1332222222222
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHH
Q 000837 613 ACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQ 692 (1262)
Q Consensus 613 ~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 692 (1262)
++..........++..+|..++..-...|+++.|..++.+|.+.|++.+...|..|+-+ .++...+..++.-|.
T Consensus 190 ---kLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq 263 (1088)
T KOG4318|consen 190 ---KLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ 263 (1088)
T ss_pred ---HHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH
Confidence 22222222222467777888887777788888888888888888887777777777655 667777777777888
Q ss_pred hcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHH------------HH
Q 000837 693 NRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALV------------EE 760 (1262)
Q Consensus 693 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l------------~~ 760 (1262)
+.|+.|+.+|+...+..+..+|....+.+... ....+...+++....| ..|.+.+ ..
T Consensus 264 e~gv~p~seT~adyvip~l~N~~t~~~~e~sq---------~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~ 332 (1088)
T KOG4318|consen 264 EKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ---------LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKK 332 (1088)
T ss_pred HhcCCCCcchhHHHHHhhhcchhhhhcccccc---------hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhH
Confidence 88888888887777666666554332221110 0111112222222233 1222211 11
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC-CChhcHHhHHHHHHhcCCHHHHHHHHH--HHhhcC
Q 000837 761 LLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN--MA-PCLDVSVSLIPQLFRTGRLEKAVALRE--ISLKEQ 835 (1262)
Q Consensus 761 ~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~ 835 (1262)
..-.|.......|...+.. ..+|.-++.+++...+...- .. .++..+..++..|.+.-+......++. +..+..
T Consensus 333 ~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~ 411 (1088)
T KOG4318|consen 333 LFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN 411 (1088)
T ss_pred HHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 1112333333333333222 22566666666666654211 11 123334444444443222111111111 111100
Q ss_pred CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCC-------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 836 PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLS----QGML-------LEDEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 836 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-------pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
. ++..--.+.....+. +...+.+-+..+.. .-.. +-...-+.++..++..-+..+++..-+.+...
T Consensus 412 l--~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~ 488 (1088)
T KOG4318|consen 412 L--NSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL 488 (1088)
T ss_pred h--chhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000000 11111111111100 0000 01112334444555555555554433333222
Q ss_pred CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-H
Q 000837 905 RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKS--HNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL-LPD-E 980 (1262)
Q Consensus 905 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~ 980 (1262)
-+ ...|..|++.++...+.+.|..+.+++...... .+..-+..+.+.+.+.+...++..+++++.+.-. .|+ .
T Consensus 489 lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a 565 (1088)
T KOG4318|consen 489 LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVA 565 (1088)
T ss_pred Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHH
Confidence 11 145677777777777777777777766654322 2444566667777777777777777777766322 121 2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
.++-.+++.....|+.+.-.++++-+...|+
T Consensus 566 ~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 566 IILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 3444455556666666666666666655544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-16 Score=188.00 Aligned_cols=359 Identities=11% Similarity=0.052 Sum_probs=274.9
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 000837 154 NEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERA 233 (1262)
Q Consensus 154 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 233 (1262)
+.+|+..+-.|+........-..+..-....+..+.+.|++++|..++....... |.++.+...++.++...|++++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHH
Confidence 3455566556665543211111222334456667778899999999999988876 55778888888899999999999
Q ss_pred HHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 234 VLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKA 313 (1262)
Q Consensus 234 ~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 313 (1262)
+..|+++.+..+. +...|..+...+...|++++|...|+++++..+. +...+..++.++...|++++|...++.+
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999988654 6778888899999999999999999999887643 5667888888999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CC--CCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH
Q 000837 314 MAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KC--TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI 390 (1262)
Q Consensus 314 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 390 (1262)
.... +.+...+..+ ..+...|++++|...++.+ .. .++...+..+...+.+.|++++|...+++..+.. +.+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7764 2333344333 3478889999999999987 22 2334445556778888999999999999988765 33567
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHH
Q 000837 391 TFGILIGWTCREGNLRS----ALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILL 466 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li 466 (1262)
.+..+...+...|++++ |...|++..+..+. +...+..+...+.+.|++++|...+++..+... .+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 77888899999999886 78999988877433 677888889999999999999999999888642 2355677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCch-hhHHhhhhhhccCCCHHH
Q 000837 467 AGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKV-EFFDNLGNGLYLDTDLDE 545 (1262)
Q Consensus 467 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 545 (1262)
..|.+.|++++|...++++.+.+ |+. ..+...+..+...|+.++
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~-----------------------------------P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK-----------------------------------GVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-----------------------------------ccchHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999988765 333 334445677888899999
Q ss_pred HHHHHHHHhhcCCC
Q 000837 546 YERKLSKIIEDSMI 559 (1262)
Q Consensus 546 a~~~l~~~~~~~~~ 559 (1262)
|...+++.+...+.
T Consensus 371 A~~~l~~al~~~P~ 384 (656)
T PRK15174 371 AESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHhChh
Confidence 99999988776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=193.16 Aligned_cols=264 Identities=9% Similarity=0.030 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
.++..+...|++++|+..|.++.+.++. +..++..+...+...|++++|...++.++..+..........+..++..+.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888776543 556777777777777777777777777765432100001123444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCc------ccHHHHHHHHHhhCChh
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDV------LAGNRIIHTLCSIFGSK 371 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~li~~~~~~g~~~ 371 (1262)
+.|++++|..++.++.+.. +.+..+++.++..|++.|++++|.+.++++ ...|+. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 5555555555555555432 233444555555555555555555555544 111111 11223333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMV 451 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 451 (1262)
+|...|+++.+.. +.+..++..+...+.+.|++++|.++|+++.+.+......+++.++.+|++.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444322 112233334444444444444444444444433222112333444444444444444444444444
Q ss_pred hCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 452 NRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 452 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
+. .|+...+..++..+.+.|++++|..+++++.+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33 12333333344444444444444444444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-14 Score=161.60 Aligned_cols=625 Identities=13% Similarity=0.071 Sum_probs=342.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChH
Q 000837 568 MVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVR 647 (1262)
Q Consensus 568 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 647 (1262)
....+|+.++|..++.++++..+ .+...|.+|-..|-..|+ .+++...+-.+....+. |..-|..+.....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 34445777777777777776532 245566666666666666 66666555444433322 5566666666666666677
Q ss_pred HHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccH----HHHHHHHhhhCchHhHHHHH
Q 000837 648 DGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDC----KSLVECLCHKKLLKESLQLF 723 (1262)
Q Consensus 648 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~ 723 (1262)
.|.-+|.++++..+. +...+---+..|-+.|+...|...|.++....-..|-.-+ -.++..+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777666665443 4334444455566666666666666666554310011111 11223333344444444444
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 000837 724 ECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNM-- 801 (1262)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-- 801 (1262)
+..... .+-..+...++.++..+.+...++.+......+.....
T Consensus 304 e~~~s~----------------------------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 304 EGALSK----------------------------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHhh----------------------------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 444331 12233444555556666666666666555555443111
Q ss_pred -------------------------CCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--CCchHHhHHHHHHHHhhcC
Q 000837 802 -------------------------APCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--PLLLFSFHSAFISGFCVTG 854 (1262)
Q Consensus 802 -------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 854 (1262)
.++..+ ..+.-++.+....+....+..-+.... +.-++..|..+..+|...|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 111111 011112222222222222333333332 3344556666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHH
Q 000837 855 KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKE 934 (1262)
Q Consensus 855 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 934 (1262)
++.+|+.+|..+...-..-+...|-.+..+|-..|.+++|.+.|...+...+ .+...--.|...+-+.|+.++|.+.++
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 7777777777776644434455666677777777777777777777766532 234444556666667777777777776
Q ss_pred HHHhCC--------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHhhHH
Q 000837 935 LMLGQN--------KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE-----LLP-----------------DEVTYN 984 (1262)
Q Consensus 935 ~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p-----------------d~~~~~ 984 (1262)
.+...+ ..|+..........+.+.|+.++-+.+..+|.... +-| ......
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLK 587 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHH
Confidence 644221 22333334444566667777777665555544321 101 111122
Q ss_pred HHHHHhhcCCChhHHHHH------HHHHHHCCCCCCh--hcHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCH---H
Q 000837 985 FLIYGFSKHKDVSSSKYY------IAAMVSKGFNPSN--RSLRSVISCLCEVGELGKSLELSQEMRLKGL--VHDS---I 1051 (1262)
Q Consensus 985 ~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~---~ 1051 (1262)
.++.+-.+.++....... +......|+.-+. ..+.-++.++++.+++++|+.++..+.+... .++. .
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~ 667 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKE 667 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHH
Confidence 222333333221111111 1111112222221 2345677799999999999999998887422 2222 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDK---DLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII 1127 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 1127 (1262)
.-...+.+.+..+++..|.+.+..|... ...|. ...||.......+.++----.+++..+... .|+......++
T Consensus 668 l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i 745 (895)
T KOG2076|consen 668 LQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeee
Confidence 4456677788899999999999999864 11232 445665556666666554444454444433 23332223333
Q ss_pred cc-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHCCCC-CCHHHH
Q 000837 1128 ST-----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLC----------QEGRTTEAERLLISMVQLGDT-PTQEMY 1190 (1262)
Q Consensus 1128 ~~-----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~l~~~~~~~~~~-p~~~~~ 1190 (1262)
.+ ++.+..|+..|-++.. ..|+ |.+--+++-++. |+-..-++...+++..+.-.. ....++
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~ 823 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAF 823 (895)
T ss_pred echhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 33 8899999998888876 6675 333333333321 111233566677776664211 247888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh------------hhHHHHHHHhhccccc
Q 000837 1191 SSVVNRYSLENNLGKASELMQAMQQSGYSPDF------------STHWSLISNLRNSNDK 1238 (1262)
Q Consensus 1191 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------~~~~~~l~~l~~~~~~ 1238 (1262)
+.++++|-..|-..-|+.+|+++++. .|-+ ..+...|.-+|++.|.
T Consensus 824 YNigRayh~~gl~~LA~~YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 824 YNIGRAYHQIGLVHLAVSYYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 89999999999999999999999984 3211 1134556667776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-13 Score=155.85 Aligned_cols=361 Identities=12% Similarity=0.080 Sum_probs=248.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC
Q 000837 184 MALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK 263 (1262)
Q Consensus 184 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~ 263 (1262)
.+..+.-.|++++|.+++.+++++. |.++..|..|...|-..|+.+++...+-..-..++. |...|-.+.......|
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 3444556699999999999999887 567788999999999999999998888877777655 5688888888888899
Q ss_pred chhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHH
Q 000837 264 VTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVF----NEVAYGYCEKKDFE 339 (1262)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~ 339 (1262)
.+++|.-.|.++++..+. +...+..-...|-+.|+...|..-+.++.....+.|..-+ -.+++.+...++-+
T Consensus 222 ~i~qA~~cy~rAI~~~p~----n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS----NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999888753 5556666677788889999999999998876432232222 23456667777778
Q ss_pred HHHHHHHHc----CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH----------------------hHH
Q 000837 340 DLLSFFTEM----KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI----------------------TFG 393 (1262)
Q Consensus 340 ~A~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------ty~ 393 (1262)
.|.+.++.. +...+...++.++..|.+...++.|......+.....++|.. .|.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 888888877 334456678888999999999999888887777622222221 111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 000837 394 ----ILIGWTCREGNLRSALVFFSEILSRG--LNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLA 467 (1262)
Q Consensus 394 ----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 467 (1262)
.+.-++......+....+........ +.-++-.|.-+..+|...|++.+|.++|..+...-.--+...|--+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 12222333333333333344444444 444567788888888888888888888888887755556778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHH
Q 000837 468 GYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYE 547 (1262)
Q Consensus 468 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 547 (1262)
+|-..|.+++|.+.++..+...+ .+...-..+...+.+.|+.++|.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p----------------------------------~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAP----------------------------------DNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC----------------------------------CchhhhhhHHHHHHhcCCHHHHH
Confidence 88888888888888888887654 23344445556667777777777
Q ss_pred HHHHHHhhcCCC--------CC---hHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 548 RKLSKIIEDSMI--------PN---FNSLIKMVHARGNLKAALLLVDEM 585 (1262)
Q Consensus 548 ~~l~~~~~~~~~--------~~---~~~li~~~~~~g~~~~A~~~~~~m 585 (1262)
+.+.++...+.. |. .....+.+.+.|+.++=+..-..|
T Consensus 504 EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 504 ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777775533311 11 223344455566665544444444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-15 Score=182.55 Aligned_cols=91 Identities=11% Similarity=-0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~ 260 (1262)
+...+..+.+.|+|++|...+.+.++.. | ++..|..+..+|...|++++|++.+++..+.++. +..+|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4444555555555555555555555432 2 2344555555555555555555555555554332 3444555555555
Q ss_pred hcCchhHHHHHHHHH
Q 000837 261 KMKVTHLAFRVCVDM 275 (1262)
Q Consensus 261 ~~~~~~~A~~~~~~m 275 (1262)
..|++++|+..|...
T Consensus 206 ~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 206 GLGKYADALLDLTAS 220 (615)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-15 Score=185.79 Aligned_cols=410 Identities=12% Similarity=0.019 Sum_probs=250.0
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 000837 809 VSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEA 888 (1262)
Q Consensus 809 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 888 (1262)
.-.+......|+.++|++++.......+. +...+..+...+.+.|++++|..+|++.++... .+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 33444445555555555555555432211 233345555555555555555555555554211 1233344444455555
Q ss_pred CCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 000837 889 NNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVL 968 (1262)
Q Consensus 889 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 968 (1262)
|++++|...++++++... .+.. +..+...+...|+.++|+..++.+.+..+. +...+..+..++...|..++|++.+
T Consensus 97 g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 555555555555555422 2233 555555555556666666666555554222 3334444555555566666666655
Q ss_pred HHHHHCCCCCCH------hhHHHHHHHh-----hcCCCh---hHHHHHHHHHHHC-CCCCChh-cHH----HHHHHHHhc
Q 000837 969 DELQENELLPDE------VTYNFLIYGF-----SKHKDV---SSSKYYIAAMVSK-GFNPSNR-SLR----SVISCLCEV 1028 (1262)
Q Consensus 969 ~~m~~~g~~pd~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~ 1028 (1262)
+.... .|+. .....++... ...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 54432 1221 0111111111 122233 6788888888863 2233321 111 113345677
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHH
Q 000837 1029 GELGKSLELSQEMRLKGLV-HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP---DTINYDNLIKRFCGYGRLDKA 1104 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A 1104 (1262)
|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..... ....+..|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999998886532 332 22225778889999999999999987643211 124566677788899999999
Q ss_pred HHHHHHHHhCCC-----------CCCHHH--H----HHHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 000837 1105 VDLLNIMLKKGS-----------TPNSSS--Y----DSIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1105 ~~~~~~~~~~~~-----------~p~~~~--~----~~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 1166 (1262)
.+.++.+..... .|+... . ..++...|++++|++.++++.. ..| +...+..++..+...|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 999998887521 123211 1 1111128999999999999987 456 7788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
++++|++.++++.+.. +.+...+..++..+...|++++|..+++++++ ..|+++....+=...
T Consensus 408 ~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999852 44578888899999999999999999999999 689988665554444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-12 Score=137.49 Aligned_cols=615 Identities=10% Similarity=0.029 Sum_probs=380.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHH
Q 000837 540 DTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGL 617 (1262)
Q Consensus 540 ~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l 617 (1262)
.+|...|..+++.+.+-+|... |-+-.+.--..|.+..|..+..+--+. +..+...|-..++ ... .+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp-~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHP-PDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCC-hHHHHHH
Confidence 3467788888888887776544 666666666677777777765443332 3334444443332 222 4556666
Q ss_pred HHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCC
Q 000837 618 LEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL 697 (1262)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 697 (1262)
........+. ++..|-.-++ -..+...-.+++++.++.- +.++..|.... ...+.++|..++.+..+. .
T Consensus 338 vA~Avr~~P~-Sv~lW~kA~d---LE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec--c 406 (913)
T KOG0495|consen 338 VANAVRFLPT-SVRLWLKAAD---LESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC--C 406 (913)
T ss_pred HHHHHHhCCC-ChhhhhhHHh---hhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh--c
Confidence 5555443221 3333322221 1223333445666666652 22555555433 345556677777777663 2
Q ss_pred CCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHH
Q 000837 698 PGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLI 777 (1262)
Q Consensus 698 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li 777 (1262)
|. -.-|.-+|.+..-++.|..+++++.+.-|. +...|.+-.
T Consensus 407 p~---s~dLwlAlarLetYenAkkvLNkaRe~ipt------------------------------------d~~IWitaa 447 (913)
T KOG0495|consen 407 PQ---SMDLWLALARLETYENAKKVLNKAREIIPT------------------------------------DREIWITAA 447 (913)
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------------------------------ChhHHHHHH
Confidence 31 123445566677777888888777766555 334443333
Q ss_pred HHHHhcCCHHHHHHHHHHHh----hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hHHhHHHHHHHHh
Q 000837 778 RGLCKEKKFSVAFKMLDSML----DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLL--LFSFHSAFISGFC 851 (1262)
Q Consensus 778 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 851 (1262)
..--..|+.+....++++-+ ..|...+..-+..=...|-..|..-.+..+....+.-|.+- -..+|..-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 33334444444444443322 23444444444444445555555555555555544443332 2345666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHH
Q 000837 852 VTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWAL 930 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 930 (1262)
+.+.++-|..+|...++ +.| +...|......=-..|..+....+|++++..- +.....|...+..+...|++..|.
T Consensus 528 k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 66666666666666665 333 23334444333344566666666776666653 234455555566666677777777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCC
Q 000837 931 NLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKG 1010 (1262)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 1010 (1262)
.++....+..+. +...|-.-+.....+..+++|..+|.+.... .|+...|.--+..-...+..++|++++++.++.
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 777776665333 5566777777777778888888888777663 456666665555556677888888888888773
Q ss_pred CCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 000837 1011 FNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYD 1089 (1262)
Q Consensus 1011 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 1089 (1262)
-|+. ..|..+...+-+.++++.|.+.|..-.+. ++.....|-.|...=-+.|.+-.|..++++..-++.. +...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 3443 45555666777888888888877766554 3444667777777777888888899999888765433 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 1090 NLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEG 1166 (1262)
Q Consensus 1090 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 1166 (1262)
..|..-.+.|+.+.|..++.+.++. ++.+-.-|..-|.. -++--.+.+.+++ +.-|+..+-.++..+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHH
Confidence 8888888899999998888888775 33344445555544 2332333333332 4567778889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHH
Q 000837 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLI 1229 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 1229 (1262)
+++.|.+.|.++++.+ +.+..+|.-+..-+..+|.-+.-.+++++... .+|.....|.-+
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 9999999999999863 44577777788889999998888999999887 577766666544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=181.55 Aligned_cols=190 Identities=10% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhcCCCh
Q 000837 921 CMEGGVPWALNLKELMLGQNKS-HNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLP---DEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 921 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~ 996 (1262)
...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3446666666666666554321 111 11123555666666666666666655432110 012344445556666666
Q ss_pred hHHHHHHHHHHHCCC-----------CCCh---hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 000837 997 SSSKYYIAAMVSKGF-----------NPSN---RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLS 1062 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 1062 (1262)
++|..+++++.+... .|+. ..+..+...+...|++++|++.++++... .+.+...+..++..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 666666666665310 1221 12344555666777777777777777665 23346677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.|++++|++.++++++ ..|+ ...+..++..+...|++++|.++++++++.
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777777777776 3454 555666666677777777777777777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-15 Score=181.22 Aligned_cols=330 Identities=9% Similarity=0.027 Sum_probs=268.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHH
Q 000837 217 FSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296 (1262)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~ 296 (1262)
....+..+.+.|++++|..++.......+. +...+..++.++...|++++|...|+++++..+. +...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~----~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC----QPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHH
Confidence 445677889999999999999999988666 4556666677888899999999999999998764 56778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHhhCChhHHHH
Q 000837 297 LCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGNRIIHTLCSIFGSKRADL 375 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 375 (1262)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+ ...|+.......+..+.+.|++++|..
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998864 556788889999999999999999999988 334443332222345788999999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHH
Q 000837 376 FVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKH----AKEILDEMV 451 (1262)
Q Consensus 376 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~----A~~l~~~m~ 451 (1262)
.++.+.+....++...+..+...+.+.|++++|...+++..+..+. +...+..+...|...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999887654445556666678888999999999999999987533 57788889999999999986 799999998
Q ss_pred hCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHH
Q 000837 452 NRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFD 531 (1262)
Q Consensus 452 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 531 (1262)
+... .+...+..+...+.+.|++++|...+++..+..+ .+.....
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P----------------------------------~~~~a~~ 322 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP----------------------------------DLPYVRA 322 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHH
Confidence 8642 2567888899999999999999999999988764 3455677
Q ss_pred hhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 000837 532 NLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRW 588 (1262)
Q Consensus 532 ~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 588 (1262)
.++..+...|++++|...++++....+... +..+..++...|++++|+..|++..+.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788888889999999999998887766543 344567788899999999999888774
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-14 Score=170.32 Aligned_cols=435 Identities=12% Similarity=0.066 Sum_probs=257.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHH
Q 000837 781 CKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEAS 860 (1262)
Q Consensus 781 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 860 (1262)
.+.|+++.|+..|++..+....-...++ .++..+...|+.++|+..+++.....+. .......+...|...|++++|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~-~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI-SSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555443211101122 4444455555555555555555411111 1122222233455555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 000837 861 KLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQN 940 (1262)
Q Consensus 861 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 940 (1262)
++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 555555553322 2333344444555555555555555555443 2233333333333333344434555555555542
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH------HHHHHHh-----hcCCC---hhHHHHHHHHH
Q 000837 941 KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTY------NFLIYGF-----SKHKD---VSSSKYYIAAM 1006 (1262)
Q Consensus 941 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~------~~li~~~-----~~~g~---~~~A~~~~~~m 1006 (1262)
+.+...+..+..++.+.|-...|.++..+-..- +.+...-+ ..++..- ...++ .+.|+.-++.+
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 223444445555555555555555444332211 11111000 0011000 01112 34555566665
Q ss_pred HHC-CCCCCh-hcH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000837 1007 VSK-GFNPSN-RSL----RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD 1080 (1262)
Q Consensus 1007 ~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 1080 (1262)
... +-.|.. ..| .-.+-++...|++.++++.++.+...|.+....+-..++++|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 542 222332 222 22445788899999999999999988766566788899999999999999999999997643
Q ss_pred C-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCCH--HHHHHHHcc----cCChhHHHH
Q 000837 1081 L-----VPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGS-----------TPNS--SSYDSIIST----CNKLDPAMD 1138 (1262)
Q Consensus 1081 ~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~~~~~ll~~----~g~~~~A~~ 1138 (1262)
. .++......|..+|...+++++|..+++.+.+... .|+. ..+..+... .|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 22344457889999999999999999999988311 1222 122222221 899999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 000837 1139 LHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1139 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 1217 (1262)
.++++.. ..| |......++..+...|...+|+++++.+... .+.+..+....+.++...|++++|..+.+.+++
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~-- 512 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS-- 512 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--
Confidence 9999987 667 8899999999999999999999999887765 244577888999999999999999999999999
Q ss_pred CCCChhhHHH
Q 000837 1218 YSPDFSTHWS 1227 (1262)
Q Consensus 1218 ~~p~~~~~~~ 1227 (1262)
..|++...-.
T Consensus 513 ~~Pe~~~~~~ 522 (822)
T PRK14574 513 RSPEDIPSQE 522 (822)
T ss_pred hCCCchhHHH
Confidence 6887775433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-11 Score=135.30 Aligned_cols=507 Identities=14% Similarity=0.071 Sum_probs=354.5
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCC
Q 000837 548 RKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANK 627 (1262)
Q Consensus 548 ~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~ 627 (1262)
+++.+.++.-|. -..|-.+.....+.+.|..++.+..+. +..+...|.++ .+... ++.|.+++....+. ++
T Consensus 367 RVlRKALe~iP~--sv~LWKaAVelE~~~darilL~rAvec-cp~s~dLwlAl----arLet-YenAkkvLNkaRe~-ip 437 (913)
T KOG0495|consen 367 RVLRKALEHIPR--SVRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLET-YENAKKVLNKAREI-IP 437 (913)
T ss_pred HHHHHHHHhCCc--hHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHH-HHHHHHHHHHHHhh-CC
Confidence 444444444333 334555666777777788888888874 33333444433 33344 88888888888664 44
Q ss_pred CChHHHHHHHHHHHccCChHHHHHHHHHH----hhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC--Ccc
Q 000837 628 LDQESLNLLIQACCKKGLVRDGKKIFDGM----LQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP--GLE 701 (1262)
Q Consensus 628 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~ 701 (1262)
.+..+|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-+.|..-.+..+....+.-|+.. -..
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHh
Confidence 48888877666666788888888887654 456888899999888888888898888888888888777654 345
Q ss_pred cHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 000837 702 DCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLC 781 (1262)
Q Consensus 702 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~ 781 (1262)
||..-...|.+.+.++-|..+|..+++..|. +...|......--
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~------------------------------------k~slWlra~~~ek 561 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPC------------------------------------KKSLWLRAAMFEK 561 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccc------------------------------------hhHHHHHHHHHHH
Confidence 7788888888888888888888888776665 4455555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHH
Q 000837 782 KEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASK 861 (1262)
Q Consensus 782 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 861 (1262)
..|..+....+|+++...- +-....+......+...|++..|..++.+..+..+. +...|-.-+........++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 5666666677777666542 223344445555666777777777777777776655 66667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 000837 862 LFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNK 941 (1262)
Q Consensus 862 ~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 941 (1262)
+|.+.... .|....|.--+..--..++.++|.+++++.++. ++.-...|..+.+.+-..++++.|...|..-.+. .
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 77777663 345555554444444567777777777777765 3333455666677777777777777777655443 2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHH
Q 000837 942 SHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSV 1021 (1262)
Q Consensus 942 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 1021 (1262)
+..+..|-.|...--+.|.+-+|..+|++..-++. -+...|...|.+=.+.|..+.|..+..+.++. ++.+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 33556677777777778888888888888776643 26677888888888888888888888887774 34445566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGR 1100 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 1100 (1262)
|....+.++-......+++ ...|+.+.-.+...+....++++|.+.|++..+. .|| ..+|..+...+...|.
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 6666665554444333332 4567888888889999999999999999999985 444 6788888888999998
Q ss_pred hHHHHHHHHHHHhC
Q 000837 1101 LDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1101 ~~~A~~~~~~~~~~ 1114 (1262)
-++-.+++++....
T Consensus 867 eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 867 EEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-14 Score=148.19 Aligned_cols=254 Identities=17% Similarity=0.235 Sum_probs=164.2
Q ss_pred hcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 334 EKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFS 413 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 413 (1262)
+.|.+.+ -+|+.. +....+|.++|.++|+-...++|.+++++-.+...+.+..+||.+|.+-.-. ...++..
T Consensus 191 K~G~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 191 KSGAVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred ccccHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 4555554 344444 3455788999999999999999999999988877789999999999875432 2388999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 000837 414 EILSRGLNPDVHTYNSLISGMFKEGMSKHA----KEILDEMVNRGITPSLSTYRILLAGYCKARQFDE-AKIMVSEMAKS 488 (1262)
Q Consensus 414 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 488 (1262)
+|....+.||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|.-+|+.++..+ |..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999999999999999999999999987665 5688899999999999999999999999987643 45555554432
Q ss_pred CCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCC---CCC----
Q 000837 489 GLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSM---IPN---- 561 (1262)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~---~~~---- 561 (1262)
-. | +...+....+...|......+....+.+-|.++..-...... .+.
T Consensus 343 lt-----------------G--------K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 343 LT-----------------G--------KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred hc-----------------c--------CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 10 0 000111114455666666666666666666655443332211 111
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHh
Q 000837 562 ---FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKM 621 (1262)
Q Consensus 562 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~ 621 (1262)
|..+....|+....+.-...|+.|+-.-.-|+..+...++++....+. ++-.-+++..+
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~-~e~ipRiw~D~ 459 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR-LEVIPRIWKDS 459 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc-chhHHHHHHHH
Confidence 334444445555555555555555444444444444444444433333 33333333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-13 Score=167.56 Aligned_cols=427 Identities=11% Similarity=0.038 Sum_probs=237.1
Q ss_pred HHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc-cHHHH--HHHHhhhCch
Q 000837 640 CCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE-DCKSL--VECLCHKKLL 716 (1262)
Q Consensus 640 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 716 (1262)
..+.|+++.|++.|++..+..+.-....+ .++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 56889999999999999887554212334 77777888899999999998887 24322 23333 4567778999
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 717 KESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSM 796 (1262)
Q Consensus 717 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~ 796 (1262)
++|+++|+++++..|. +...+..++..+...++.++|+..++.+
T Consensus 119 d~Aiely~kaL~~dP~------------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 119 DQALALWQSSLKKDPT------------------------------------NPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHHHhhCCC------------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999888887 3333344445555555555555555555
Q ss_pred hhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 797 LDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 797 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
... .|+...+..++..+...++..+|++.++++.+..|. +...+..+...+.+.|-...|+++.++-..- ..+...
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~ 238 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHY 238 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHH
Confidence 443 222333333333333344444455555555555433 3344444555555555555555444331110 000000
Q ss_pred h------HHHHHH-HH----HhcCC---HHHHHHHHHHHHHC-CCccCh-h----hHHHHHHHHHhcCChhhHHHHHHHH
Q 000837 877 V------YNMLIQ-GH----CEANN---LRKVRELLSAMIRK-RLSLSI-S----SYRNLVRWMCMEGGVPWALNLKELM 936 (1262)
Q Consensus 877 t------~~~ll~-~~----~~~g~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~ 936 (1262)
. ....+. +. ...++ .+.|+.-++.++.. +..|.. . .....+-++...++..++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 000000 00 00111 23344444444432 111221 1 1122344555667777777777777
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCC
Q 000837 937 LGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE-----LLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGF 1011 (1262)
Q Consensus 937 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 1011 (1262)
...+.+....+-..+.++|...+++++|..+|+++.... ..++......|..++...+++++|..+++++.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 666544344455666777777777777777777765432 112223345666777777777777777777766210
Q ss_pred -----------CC--Chh-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1012 -----------NP--SNR-SLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1012 -----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
.| |-. .+..++..+...|++.+|++.++++... -+-|......+.+.+...|.+.+|++.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 11 111 1223444566667777777777777654 23356666677777777777777777775555
Q ss_pred hCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1078 DKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1078 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
. +.|+ ..+....+.++...+++.+|.++.+.+.+.
T Consensus 478 ~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 478 S--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred h--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 4 3443 455556666666667777777666666653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-12 Score=135.70 Aligned_cols=357 Identities=14% Similarity=0.203 Sum_probs=247.1
Q ss_pred hHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHH
Q 000837 839 LFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVR 918 (1262)
Q Consensus 839 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 918 (1262)
+..++.+||.++|+--..+.|.+++++......+.+..+||.+|.+-+- ....+++.+|+.....||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 5677888999999998899999999998887788888899988876543 233788889999889999999999999
Q ss_pred HHHhcCChhhH----HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----CHhhHHH
Q 000837 919 WMCMEGGVPWA----LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFH-VKRVLDELQE----NELLP----DEVTYNF 985 (1262)
Q Consensus 919 ~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----d~~~~~~ 985 (1262)
+..+.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++.. +.++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999987764 5566777788888888888888888888777644 3444444332 22333 4456677
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHC----CCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 000837 986 LIYGFSKHKDVSSSKYYIAAMVSK----GFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAE 1058 (1262)
Q Consensus 986 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~ 1058 (1262)
.+..|.+..+.+-|.++..-+... -+.|+ ...|..+....|.....+.-...|+.|.-.-+.|++.+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 778888888888888776655532 12232 23455677788888888888888888887777788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHcc-cCChh
Q 000837 1059 GLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS---SYDSIIST-CNKLD 1134 (1262)
Q Consensus 1059 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~~-~g~~~ 1134 (1262)
+....|.++-.-.++.++...|.. ++. +--++++..|......|+.. .+...... .-++.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 888888888777777777764422 111 12223344444433344322 22222221 22222
Q ss_pred HHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1135 PAMD-LHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD----TPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1135 ~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
++.+ .-+++.+..+ .+...++++-.+.|.|++++|.+++....+.+- .|.-.....+++.-...++.-.|+.+
T Consensus 506 e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 2222 1233333233 455788899999999999999999999975432 34455566888888899999999999
Q ss_pred HHHHHHcC
Q 000837 1210 MQAMQQSG 1217 (1262)
Q Consensus 1210 ~~~~~~~~ 1217 (1262)
++-|...+
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 99997753
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-09 Score=119.80 Aligned_cols=857 Identities=12% Similarity=0.089 Sum_probs=488.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHh
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCR 299 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~ 299 (1262)
.+..|++.|++++++-+. .+.|..|+ |-.+++.+.+ -..+.+.++...|.... +...-++.++..+..
T Consensus 487 Vi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~-----~~~~die~I~DlFme 554 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE-----EPLADIEQIVDLFME 554 (1666)
T ss_pred HHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC-----CCcccHHHHHHHHHH
Confidence 334444444444444332 34577776 5567777766 67888888887776644 334456667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHH
Q 000837 300 DRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQE 379 (1262)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 379 (1262)
......+..++-..++..-+......+.++..-.. +-..-|..++..- --...-+-.+...|.+.|-..+|++.+..
T Consensus 555 ~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-~aPqVADAILgN~--mFtHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV-HAPQVADAILGND--MFTHYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc-cchHHHHHHHhcc--ccccccHHHHHHHHHhcchHHHHHHhccc
Confidence 77777777777666655433333444455543322 2233333333211 11122367788888889999999988766
Q ss_pred HHHCCCCCCHHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--
Q 000837 380 LEHSGFRPDEITFG----ILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR-- 453 (1262)
Q Consensus 380 m~~~g~~p~~~ty~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-- 453 (1262)
+.+- +-..+.-+ -.+-.|.-.-.++++.+.+..|+..+++.+..+.--+..-|...=-.+...++|+....-
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5431 11111100 112344556678899999999999888888887777777777766667777777776652
Q ss_pred ---------CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCC
Q 000837 454 ---------GITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGF 524 (1262)
Q Consensus 454 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1262)
++..|....-..|.+-|+.|++.+..++.++----++. . ++.+.-- .+.
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE---r-----vKNfLke--------------AkL 767 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE---R-----VKNFLKE--------------AKL 767 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH---H-----HHHHHHh--------------ccc
Confidence 23345555566788999999999888877642111100 0 0000000 000
Q ss_pred CchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000837 525 SKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGL 604 (1262)
Q Consensus 525 p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 604 (1262)
+|... ++..+.+-+ +-.-+..|.-+.+..+=+++|-+-+ ++...+.+...|++.-
T Consensus 768 ~DqlP---LiiVCDRf~--------------------fVhdlvlYLyrnn~~kyIE~yVQkv--Nps~~p~VvG~LLD~d 822 (1666)
T KOG0985|consen 768 TDQLP---LIIVCDRFD--------------------FVHDLVLYLYRNNLQKYIEIYVQKV--NPSRTPQVVGALLDVD 822 (1666)
T ss_pred cccCc---eEEEecccc--------------------cHHHHHHHHHHhhHHHHHHHHHhhc--CCcccchhhhhhhcCC
Confidence 11100 111111111 1111112222333333333332211 1222233334444322
Q ss_pred HhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhH
Q 000837 605 CASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDL 684 (1262)
Q Consensus 605 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 684 (1262)
| -++.++-+-.... .....+-|+.-.-+.+++.--...++...+.|.. ++.++++|...|...++-.+-
T Consensus 823 C-----~E~~ik~Li~~v~-----gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 823 C-----SEDFIKNLILSVR-----GQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred C-----cHHHHHHHHHHHh-----ccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH
Confidence 2 2222221111111 1122344566677888888888899999999988 999999999888865543321
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhh----cCCCChhHHHHHHHHHHhcCCcccHHHHHHH
Q 000837 685 HAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVS----CPCLRSDICYIFLEKLCVTGFSSNAHALVEE 760 (1262)
Q Consensus 685 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~ 760 (1262)
. +..+..--+..+.-||...++.-|.-.|++-... +.......+....+-+.
T Consensus 892 --f--------LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv-------------- 947 (1666)
T KOG0985|consen 892 --F--------LKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLV-------------- 947 (1666)
T ss_pred --h--------cccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHH--------------
Confidence 0 1122222234455577666555443333221000 00000000111111111
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 000837 761 LLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNM--APCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ--P 836 (1262)
Q Consensus 761 ~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~ 836 (1262)
+ +.|...|..++.- .+ .--.++.++....++ ..|+.....-+.++...+-..+-+++++++.-.+ +
T Consensus 948 --~---R~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 948 --E---RSDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred --h---ccChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 1 1133333333210 00 011234444443332 2244555566778888888888888888875322 1
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHH
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNL 916 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 916 (1262)
.-+...-|.|+-.-.+ -+.....+..+++-.-+. |+ +...+...+-+++|..+|+.. ..+....+.|
T Consensus 1018 se~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVL 1084 (1666)
T ss_pred ccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHH
Confidence 1122233444433333 345566677777665322 22 333445667788888888764 2344444444
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCCh
Q 000837 917 VRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 917 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 996 (1262)
+. ..+.+|.|.+.-+... .+..|..+..+-.+.|...+|++-|-+. -|...|.-++....+.|.+
T Consensus 1085 ie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcH
Confidence 43 3466777776655542 4567999999999999999998877543 3677899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 997 SSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQI 1076 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 1076 (1262)
++-..++.-..++.-+|.. -+.||-+|++.+++.+-.+++ ..|+......+.+-|...|.++.|.-+|...
T Consensus 1150 edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 9999998888876555543 356888999999887766554 3578888888889999999999988877654
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1077 VDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWH 1156 (1262)
Q Consensus 1077 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1156 (1262)
. .|..|...+...|++..|...-++.. +..||..+..+|-+-++ =-+.+|....+-...+-+.
T Consensus 1221 S---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~E--FrlAQiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1221 S---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEE--FRLAQICGLNIIVHADELE 1283 (1666)
T ss_pred h---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhh--hhHHHhcCceEEEehHhHH
Confidence 3 57778888888999998887776632 34455555444221111 1133444333344677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------ChhhHHHHHH
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSP------DFSTHWSLIS 1230 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~~l~ 1230 (1262)
-++.-|...|-+++.+.+++..+-. -+....+|..|+-.|.+- ++++..+-++-...+=--| +..+.|.-+-
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999887643 144566666666555443 5566666666554431111 4456788888
Q ss_pred Hhhcccccccc
Q 000837 1231 NLRNSNDKDNN 1241 (1262)
Q Consensus 1231 ~l~~~~~~~~~ 1241 (1262)
.||...+.++.
T Consensus 1362 fLY~~y~eyDN 1372 (1666)
T KOG0985|consen 1362 FLYDKYEEYDN 1372 (1666)
T ss_pred HHHHhhhhhhH
Confidence 88886655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-12 Score=130.90 Aligned_cols=494 Identities=12% Similarity=0.057 Sum_probs=292.9
Q ss_pred HHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHH-HHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHH----HHHHH
Q 000837 669 TTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCK-SLVECLCHKKLLKESLQLFECMLVSCPCLRSDIC----YIFLE 743 (1262)
Q Consensus 669 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~ 743 (1262)
..|..-|..+..+.+|+..++-+.+....|+.-... .+.+.+.+...+.+|+++|+.++..-|....... ..+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 344555666777889999999988888878765443 4556788889999999999988877666444332 22223
Q ss_pred HHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHH
Q 000837 744 KLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEK 823 (1262)
Q Consensus 744 ~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 823 (1262)
.+.+.|.++.|+..++...+. .|+-.+-..|+-.+..-|+-++..+.|..|......||..-|. +..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~---- 351 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK---- 351 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc----
Confidence 344455555555555554443 2333333334444444444555555555554433333322211 100
Q ss_pred HHHHHHHHhhcCCCchHHhHHHH-----HHHHhhcC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 000837 824 AVALREISLKEQPLLLFSFHSAF-----ISGFCVTG--KAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRE 896 (1262)
Q Consensus 824 A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~ 896 (1262)
-.|+....+.- ++-..+.+ +.+.++-.--++..--+.||-.. - .+-..+
T Consensus 352 ------------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~---g---------~dwcle 407 (840)
T KOG2003|consen 352 ------------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA---G---------CDWCLE 407 (840)
T ss_pred ------------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc---c---------cHHHHH
Confidence 11222222211 11111111 11222222222222112222110 0 011111
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHH-h-cCCHHHHHHHHHHHHHC
Q 000837 897 LLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLM-S-SGNIFHVKRVLDELQEN 974 (1262)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~ 974 (1262)
.++.-....+. ...-..-.-.+.+.|+++.|++++..+.+.+...-...-|.|...+. + -.++.+|...-+.....
T Consensus 408 ~lk~s~~~~la--~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 408 SLKASQHAELA--IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred HHHHhhhhhhh--hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 11110000000 00011123457789999999999988877654433333444433333 2 34567777666655543
Q ss_pred CCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 000837 975 ELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 975 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 1054 (1262)
. .-+......-.+.....|++++|.+.|++.+...-.-....|+ +.-.+...|++++|++.|-++..- +..+..+..
T Consensus 486 d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 486 D-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred c-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 1 1122222222233456799999999999998743222222233 222567789999999999887654 344677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---c
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---C 1130 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~ 1130 (1262)
.+.+.|-...+...|++++.+... +.| |+..+..|...|-+.|+..+|.+.+-.--.. ++-+..+..++-.. .
T Consensus 563 qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence 899999999999999999988776 455 5889999999999999999999887654443 23345555544443 5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1131 NKLDPAMDLHAEMMARDLKPSMNTWHVLVHKL-CQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
.-++.|+.+|++..- +.|+..-|..++..| .+.|+++.|.++++..... ++.|..+...|++.+...|- .+|.++
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key 715 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEY 715 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHH
Confidence 558899999999876 889999998777665 5689999999999999865 78889999999988887776 334444
Q ss_pred HH
Q 000837 1210 MQ 1211 (1262)
Q Consensus 1210 ~~ 1211 (1262)
-.
T Consensus 716 ~~ 717 (840)
T KOG2003|consen 716 AD 717 (840)
T ss_pred HH
Confidence 33
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-08 Score=114.01 Aligned_cols=848 Identities=13% Similarity=0.142 Sum_probs=409.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCC
Q 000837 202 LAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
..|..++..+.-...|..-...+..+|++++|-.+-...++ |+-.+..|-+.+=..=...|...--+..|.-++..|.
T Consensus 348 l~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGk- 425 (1666)
T KOG0985|consen 348 LRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGK- 425 (1666)
T ss_pred HHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhccc-
Confidence 33444444455556677777778889999999877766554 2333445555444444445666666666666666663
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHH
Q 000837 282 LTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRII 361 (1262)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li 361 (1262)
.|..---.+.+--..+|+.+-...++.+ +...++-=+.-+.+.-+..-|+++|.+.+++ +.++
T Consensus 426 ---LNk~ETLEL~RpVL~Q~RkqLlekWl~E--------dKLeCSEELGDlVK~~d~~lAL~iYlrAnvp------~KVi 488 (1666)
T KOG0985|consen 426 ---LNKYETLELCRPVLQQGRKQLLEKWLKE--------DKLECSEELGDLVKPYDTTLALSIYLRANVP------AKVI 488 (1666)
T ss_pred ---ccHHHHHHHHHHHHhhhHHHHHHHHhhh--------hhhhhhHHhcCccccCCchHHHHHHHHcCCc------HHHH
Confidence 2332222233333344444433333322 1111211111112222334455555555322 3456
Q ss_pred HHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 000837 362 HTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSK 441 (1262)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 441 (1262)
.+|+..|.++++.-+.. +.|..|| |-.+++...+ -..+.|.++...|.+.. |...-++.+.+.+...+.+.
T Consensus 489 ~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 489 QCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhh
Confidence 67777777777665543 4577777 3344555544 66777777777666542 12223444444444444444
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccc
Q 000837 442 HAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDND 521 (1262)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1262)
.+...+-...+. -.|+..... .++++.-...++. +..+.+..++..
T Consensus 560 q~TSFLLdaLK~-~~Pd~g~LQ---------------TrLLE~NL~~aPq--------VADAILgN~mFt---------- 605 (1666)
T KOG0985|consen 560 QCTSFLLDALKL-NSPDEGHLQ---------------TRLLEMNLVHAPQ--------VADAILGNDMFT---------- 605 (1666)
T ss_pred hhHHHHHHHhcC-CChhhhhHH---------------HHHHHHHhccchH--------HHHHHHhccccc----------
Confidence 444444333322 122222111 1122221111111 000111111000
Q ss_pred cCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000837 522 MGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN-----FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV 596 (1262)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 596 (1262)
..-...+...+-+.|-...|.+.+.++.+-.-... --.-+..|...-.++.+.++++.|...++..+..+
T Consensus 606 -----HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi 680 (1666)
T KOG0985|consen 606 -----HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQI 680 (1666)
T ss_pred -----cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence 00122333444445555555544443322110000 00112234445556677777777776666666666
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhhhc-----------CCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCH
Q 000837 597 FSALVKGLCASRSHIKACTGLLEKMPKLA-----------NKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIEN 665 (1262)
Q Consensus 597 ~~~li~~~~~~~~~~~~a~~l~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 665 (1262)
...+..-|+..-+ .+..+++|+...... ..-|+.+--..|++-|+.|.+.+..++-++ .++.
T Consensus 681 ~VQvatky~eqlg-~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre---sn~Y--- 753 (1666)
T KOG0985|consen 681 VVQVATKYHEQLG-AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE---SNCY--- 753 (1666)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc---cccC---
Confidence 6666666655554 555555555543211 111333333344444444444444333211 1111
Q ss_pred hhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-----CcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHH
Q 000837 666 ESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP-----GLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYI 740 (1262)
Q Consensus 666 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 740 (1262)
+++....++.+..-.+-.| |...+..=+-.|.-.++..+-++.|-+ +.+|...+.+...
T Consensus 754 --------------dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 754 --------------DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGA 817 (1666)
T ss_pred --------------CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhh
Confidence 1111122222221111112 222222222233333444444444432 2244433333333
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCC
Q 000837 741 FLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGR 820 (1262)
Q Consensus 741 ~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 820 (1262)
++. ....++..+-+-......+ ....|..-.-+.++..--..+++.....|.. +..+++.|...|...++
T Consensus 818 LLD----~dC~E~~ik~Li~~v~gq~-----~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 818 LLD----VDCSEDFIKNLILSVRGQF-----PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhc----CCCcHHHHHHHHHHHhccC-----ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 322 2222222222221111111 2233445555667777777777777777754 67788888777775544
Q ss_pred HHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHH----CCC----------------CCCHHhHHH
Q 000837 821 LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLS----QGM----------------LLEDEVYNM 880 (1262)
Q Consensus 821 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~----------------~pd~~t~~~ 880 (1262)
-.+-. .+.++.-| +..+.-||...++--|.-.+++-.. .++ ..|...|..
T Consensus 888 nPE~f------LkeN~yYD----s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~ 957 (1666)
T KOG0985|consen 888 NPERF------LKENPYYD----SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAK 957 (1666)
T ss_pred ChHHh------cccCCcch----hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHH
Confidence 32211 11111111 1122223333222211111111000 000 012223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCc--cChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCcchHHHHHHHHH
Q 000837 881 LIQGHCEANNLRKVRELLSAMIRKRLS--LSISSYRNLVRWMCMEGGVPWALNLKELMLGQN--KSHNLIIFNILVFHLM 956 (1262)
Q Consensus 881 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~ 956 (1262)
++. ..+ .--.++.++.++.+++ .|+.-...-+.++...+-..+-+++++++.-.+ ++.+...-|.|+-.-.
T Consensus 958 VL~---e~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi 1032 (1666)
T KOG0985|consen 958 VLN---EEN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI 1032 (1666)
T ss_pred HHh---ccC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh
Confidence 221 000 0112333444443332 344455556777777777788888888776432 2223334444444433
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE 1036 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 1036 (1262)
+ -+..+..+..+++...+. |+ +...+...+-+++|..+|++.- .+......|+. .-+.+|.|.+
T Consensus 1033 k-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1033 K-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred h-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHH
Confidence 3 344566666666654321 22 2233445666788888887642 23333333332 3467777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 000837 1037 LSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGS 1116 (1262)
Q Consensus 1037 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1116 (1262)
+-+... .+.+|..+..+-...|.+.+|++-|-++- |+..|...+....+.|.|++-++++....++.-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 765542 46789999999889999988887776542 566888889999999999999998888888776
Q ss_pred CCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 1117 TPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1117 ~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
+|...+-..+..+ .+++.+-.+ .+ ..||......+++-|+..|.++.|.-++...- .|..|..
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~----fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~ 1228 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEE----FI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLAS 1228 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHH----Hh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHH
Confidence 7777665444444 555444322 22 45777778888888888888888877666542 2444545
Q ss_pred HHHhcCCHhHHHH
Q 000837 1196 RYSLENNLGKASE 1208 (1262)
Q Consensus 1196 ~~~~~g~~~~A~~ 1208 (1262)
.+...|+++.|..
T Consensus 1229 TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=129.73 Aligned_cols=466 Identities=13% Similarity=0.109 Sum_probs=291.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcH-HhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHH----hHHHH
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVS-VSLIPQLFRTGRLEKAVALREISLKEQPLLLFS----FHSAF 846 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l 846 (1262)
....|..-|.......+|+..++-+++..+.|+...+ ..+...+.+..++.+|++++...+..-|..+.. ..+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344555666667777777777777766666665433 234556677777888888877776664444332 33344
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC------------hhhHH
Q 000837 847 ISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLS------------ISSYR 914 (1262)
Q Consensus 847 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~~~ 914 (1262)
...+.+.|.+++|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|+..-..++ ....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44567778888888888877763 36666544455555567777888888877776422222 11111
Q ss_pred H-----HHHHHHhcC--ChhhHHHHHHHHHhCCCCCCcch---H------------------HHHHHHHHhcCCHHHHHH
Q 000837 915 N-----LVRWMCMEG--GVPWALNLKELMLGQNKSHNLII---F------------------NILVFHLMSSGNIFHVKR 966 (1262)
Q Consensus 915 ~-----li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~ 966 (1262)
. .+.-+-+.+ +.++++-.-.++...-+.|+-.. | -.-.-.|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 1 112222221 11222222222222212221110 0 011234788999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhc--CCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 000837 967 VLDELQENELLPDEVTYNFLIYGFSK--HKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK 1044 (1262)
Q Consensus 967 ~~~~m~~~g~~pd~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 1044 (1262)
+++-+.++.-+.-...-+.|...+.- -.++..|.++-+..+... +-+......-.+.-...|++++|.+.+++.+..
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 99988877544333333333333322 236777777777665421 112222222223344579999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1045 GLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1045 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
...-....|| +.-.+-..|+.++|++.|-++..- +.-+..++..+...|....++.+|++++-..... ++.|+....
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 3221222333 233467789999999999887652 2235778888899999999999999999776553 233444444
Q ss_pred HHHcc---cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 000837 1125 SIIST---CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNR-YSL 1199 (1262)
Q Consensus 1125 ~ll~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~-~~~ 1199 (1262)
.+-.. .|+-.+|.+.+-.--. .-| +..+..+|+.-|....-++.|+..|+++.- +.|+.+-|..++.. +.+
T Consensus 597 kl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 44333 7888888886544432 445 888999999999999999999999999875 69999999976666 567
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhccccccccccchhhhh
Q 000837 1200 ENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLS 1249 (1262)
Q Consensus 1200 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1249 (1262)
.|++++|.++|+..... .|.+-.+..+|..+..-.|.....+....|.
T Consensus 673 sgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl~d~key~~kle 720 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGLKDAKEYADKLE 720 (840)
T ss_pred cccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccchhHHHHHHHHH
Confidence 89999999999999884 6777767777777766666555544444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.2e-08 Score=106.46 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=107.5
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRS 609 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 609 (1262)
|-.+...|...|+++.|.++|.+.- -++.-|.+|.+.|++..|.++-.+.. |++.....|.+-..-+-..|+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 4444555555566666665554320 15567888999999999988877663 344455566666666667777
Q ss_pred chHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHH
Q 000837 610 HIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWD 689 (1262)
Q Consensus 610 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 689 (1262)
+.+|.+++-.+. .|+ .-|.+|-+.|..+..+++.++--.. .-..|...+..-+-..|+...|..-|-
T Consensus 840 -f~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 840 -FAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred -hhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 888887765442 222 3467788888888888777654321 234566677778888899988888775
Q ss_pred HHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHH
Q 000837 690 IAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLF 723 (1262)
Q Consensus 690 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 723 (1262)
+.. .|..-+++|-..+.+++|.++-
T Consensus 907 ea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 907 EAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 543 3556677777777777776553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-09 Score=113.16 Aligned_cols=431 Identities=11% Similarity=0.090 Sum_probs=262.4
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHH
Q 000837 677 KKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHA 756 (1262)
Q Consensus 677 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~ 756 (1262)
..+++..|.++|+.....+ ..+...|...+.+=.++..+..|..+++.++..-|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------------------------ 139 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------------------------ 139 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------------------------
Confidence 4556666777777766544 345555666666666666666666666665543332
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 000837 757 LVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQP 836 (1262)
Q Consensus 757 ~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 836 (1262)
-...|.-.+..--..|++..|.++|+...+ ..|+...+.+.|+.=.+-+.++.|..++++..--
T Consensus 140 ------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-- 203 (677)
T KOG1915|consen 140 ------------VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-- 203 (677)
T ss_pred ------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--
Confidence 223455555666678899999999988876 4688889999999888999999999999987653
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCccC-hh
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHC----EANNLRKVRELLSAMIRKRLSLS-IS 911 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~ 911 (1262)
.|++.+|......-.+.|+...|..+|....+. .-|...-..+..+++ ....++.|.-+|+-.++.=++-. ..
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 478888888888888899999999999888763 223333333333443 35667888888888877622211 23
Q ss_pred hHHHHHHHHHhcCChhhHHHH--------HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---
Q 000837 912 SYRNLVRWMCMEGGVPWALNL--------KELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE--- 980 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--- 980 (1262)
.|..+...--+-|+.....+. ++.+.+.+ +-|-.+|--.++..-..|+.+...++|++.+.. ++|-.
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 344444333344554443332 22333321 225556666666666677777777777777764 33421
Q ss_pred ----hhHHH---HHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCC
Q 000837 981 ----VTYNF---LIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC----EVGELGKSLELSQEMRLKGLVHD 1049 (1262)
Q Consensus 981 ----~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~~ 1049 (1262)
..|.- .+..=....|++.+.++|+..++. ++-...||..+--.|+ ++.++..|.+++...+. ..|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCc
Confidence 11111 111112456677777777777762 2334455554433333 45666777777666553 4566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSII 1127 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll 1127 (1262)
..++...|..=.+.++++....++++.++- .| +..+|......-...|+.+.|..+|+..+... +......+...|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 667777777666777777777777777763 33 46666666666666777777777777766541 111222333444
Q ss_pred cc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1128 ST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1128 ~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
.. .|.++.|.++|+++++ ..+...+|..++
T Consensus 515 dFEi~~~E~ekaR~LYerlL~--rt~h~kvWisFA 547 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLD--RTQHVKVWISFA 547 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHH--hcccchHHHhHH
Confidence 43 6666666666666665 333344454443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-09 Score=122.36 Aligned_cols=509 Identities=18% Similarity=0.097 Sum_probs=290.7
Q ss_pred hcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHH---HhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCccc
Q 000837 677 KKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVEC---LCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSN 753 (1262)
Q Consensus 677 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 753 (1262)
+.+...++..-+.....++|..+..++..+..+ |+..++.+++ .+-..+. ..+......++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~--------------es~i~Re~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIE--------------ESLIPRENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHH--------------hhccccccHHH
Confidence 355667777777777777777777776665544 3444555554 1111111 11222222333
Q ss_pred HHH----HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHH
Q 000837 754 AHA----LVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALRE 829 (1262)
Q Consensus 754 a~~----~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 829 (1262)
+.- ++..+....+..|...|..+.-++...|+++.+.+.|++....- .-..+.|..+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 322 22233334455678888888888888888888888888876532 2345677777777788888888888887
Q ss_pred HHhhcCCCchHHhHHHHHHH--HhhcCCHHHHHHHHHHHHHC--CC--CCCHHhHHHHHHHHHhc----C-------CHH
Q 000837 830 ISLKEQPLLLFSFHSAFISG--FCVTGKAEEASKLFRDMLSQ--GM--LLEDEVYNMLIQGHCEA----N-------NLR 892 (1262)
Q Consensus 830 ~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~ll~~~~~~----g-------~~~ 892 (1262)
......+.|+..+--.++.. +.+.+..++++++-.+.... +. ...+..|..+.-+|... . ...
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 77665544543333333332 22456677777776666551 11 11233454444444321 1 134
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 893 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
++.+.+++.++.+.. |+.+...+.--|+..++++.|.+...+..+.+...++..|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 556666666665433 3333333444566677777777777777777666677777777777777777777777776655
Q ss_pred HCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCH
Q 000837 973 ENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK-G-LVHDS 1050 (1262)
Q Consensus 973 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g-~~~~~ 1050 (1262)
+. ..-|......-+..-...++.++|+..+..++.- --+.... ...++-....+....+.-. + ..-..
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhH-------hhhhhhhhhhhhhcccccCcccccccc
Confidence 43 0011111111111112346666666666665541 0000000 0111111111111111100 0 00012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 000837 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP--D------TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS 1122 (1262)
Q Consensus 1051 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 1122 (1262)
.++..+.......+. .+..-.. +..-...| + ...|......+.+.+..++|.-.+.+..+. .|-...
T Consensus 611 s~sr~ls~l~a~~~~--~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~ 685 (799)
T KOG4162|consen 611 STSRYLSSLVASQLK--SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSAS 685 (799)
T ss_pred hhhHHHHHHHHhhhh--hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHH
Confidence 233333222221111 1100000 11111122 2 124555667788899999999888887764 333322
Q ss_pred -HHH--HHcc-cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHH
Q 000837 1123 -YDS--IIST-CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAER--LLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1123 -~~~--ll~~-~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
|.. .... .|.+++|.+.|..... +.| ++.+...++.++.+.|+-.-|.. ++..+++.+ +.++..|..++.
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 111 1111 8999999999999886 788 56788999999999998888887 999999864 667999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1196 RYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1196 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
++.+.|+.++|.+.|+...+ ++++.+
T Consensus 763 v~k~~Gd~~~Aaecf~aa~q--Le~S~P 788 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQ--LEESNP 788 (799)
T ss_pred HHHHccchHHHHHHHHHHHh--hccCCC
Confidence 99999999999999999988 565544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-10 Score=123.58 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=145.1
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchH
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLK 717 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 717 (1262)
..+.-.|+.-.|.+.|+..+...+.++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 3455678888899999998887665333 37777777888888888888888887754 236777777777777888899
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 000837 718 ESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797 (1262)
Q Consensus 718 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~ 797 (1262)
+|+.-|++.+..+|. +...|-.+.-+..+.++++++...|++..
T Consensus 412 ~A~aDF~Kai~L~pe------------------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k 455 (606)
T KOG0547|consen 412 EAIADFQKAISLDPE------------------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAK 455 (606)
T ss_pred HHHHHHHHHhhcChh------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877776 45555555555556666777777777666
Q ss_pred hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC-------chHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 000837 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL-------LLFSFHSAFISGFCVTGKAEEASKLFRDMLSQG 870 (1262)
Q Consensus 798 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 870 (1262)
++ ++..+.+|+.....+...+++++|.+.|+...+..+. +.......++..-. .+++..|..++++..+.+
T Consensus 456 kk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 456 KK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD 533 (606)
T ss_pred Hh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC
Confidence 54 3445566666666777777777777777766554332 11111222222222 256666666666666632
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 871 MLLEDEVYNMLIQGHCEANNLRKVRELLSAMI 902 (1262)
Q Consensus 871 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 902 (1262)
.+ ....|-.|.+.-.+.|+.++|+++|+...
T Consensus 534 pk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 534 PK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 23456666666666666666666666544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-09 Score=111.64 Aligned_cols=439 Identities=11% Similarity=0.095 Sum_probs=327.6
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCc-ccHHHHH
Q 000837 629 DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGL-EDCKSLV 707 (1262)
Q Consensus 629 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li 707 (1262)
+...|-...+--...+++..|..+|++.+.-... +...|...+.+=.++..+..|..+|+..+.. .|.+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 6667776666666788999999999999987643 7778888899889999999999999998763 3432 2333334
Q ss_pred HHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 000837 708 ECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFS 787 (1262)
Q Consensus 708 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~ 787 (1262)
.+=-..|++..|.++|++-. + ..|+...|.+.|+.-.+.+.++
T Consensus 149 ymEE~LgNi~gaRqiferW~-----------------------------------~--w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWM-----------------------------------E--WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred HHHHHhcccHHHHHHHHHHH-----------------------------------c--CCCcHHHHHHHHHHHHHhhHHH
Confidence 44445566666666666543 2 4789999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC--chHHhHHHHHHHHhhcCCHHHHHHHHHH
Q 000837 788 VAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPL--LLFSFHSAFISGFCVTGKAEEASKLFRD 865 (1262)
Q Consensus 788 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 865 (1262)
.|..+++..+- +.|++..|......=.++|+...|..+|+...+.-.. .+...+.+....-.++..++.|.-+|+-
T Consensus 192 raR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 192 RARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 3588999998888889999999999999988654211 2345566666666678889999999999
Q ss_pred HHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 000837 866 MLSQGMLLED-EVYNMLIQGHCEANNLRKVREL--------LSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELM 936 (1262)
Q Consensus 866 m~~~g~~pd~-~t~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 936 (1262)
.++.-.+... ..|.....-=-+-|+.....+. ++.+++.+ +.|-.+|-..++.....|+.+...++|+..
T Consensus 270 Ald~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 270 ALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9884322222 2333333222334554444333 33444443 357778888888888899999999999999
Q ss_pred HhCCCCCC-cchHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh----hcCCChhHHHHHH
Q 000837 937 LGQNKSHN-LIIFNILVFHL--------MSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF----SKHKDVSSSKYYI 1003 (1262)
Q Consensus 937 ~~~~~~~~-~~~~~~li~~~--------~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~----~~~g~~~~A~~~~ 1003 (1262)
...-++.. -..|...|-.. ....+.+.+.++|+..++. ++-...||.-+--.| .++.++..|.+++
T Consensus 349 Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 349 IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 87633322 23344443322 3468899999999999884 444567776654444 4668899999999
Q ss_pred HHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C
Q 000837 1004 AAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDL-V 1082 (1262)
Q Consensus 1004 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~ 1082 (1262)
...+- ..|...+|...|..-.+.+++|.+..+++..++.+ +.+..+|.-.+..=...|+.+.|..+|+-++++.. .
T Consensus 428 G~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 428 GNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 88764 68999999999999999999999999999999963 33688999888888889999999999999987521 1
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1083 PDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1083 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.-...|.+.|..-...|..++|..+++.+++.
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 12456777777778899999999999999986
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-07 Score=110.09 Aligned_cols=584 Identities=11% Similarity=0.005 Sum_probs=308.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHH
Q 000837 645 LVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFE 724 (1262)
Q Consensus 645 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 724 (1262)
+...|+..|-+..+..+. =...|..|...|+..-+...|.+.|+...+.+ ..+........+.|.+..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 366677777666665433 34567778888877777778888888877654 2366677778888888888888877743
Q ss_pred HHHhhcCC-CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 000837 725 CMLVSCPC-LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAP 803 (1262)
Q Consensus 725 ~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 803 (1262)
..-+..|. .....|-.....+.+.++...+..-++...+. -+-|...|..++.+|...|++..|++.|......+ |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 33332222 11222333333344555666666666665544 24467788888889999999999999888876543 3
Q ss_pred Ch-hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC------chHHhHHHHHHHHhhcCCHHHHHHHHHHHH-------HC
Q 000837 804 CL-DVSVSLIPQLFRTGRLEKAVALREISLKEQPL------LLFSFHSAFISGFCVTGKAEEASKLFRDML-------SQ 869 (1262)
Q Consensus 804 ~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~ 869 (1262)
+. ..--.....-+..|++.+|...+..+...... .-..++-.+...+...|-...|...|++-+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22 22222333456778888888887776543110 011222222222222232333333333222 21
Q ss_pred CCCCCHHhHHHHHHHHHhcCCH------HHHHHHHHH-HHHCC--------------------CccChhhHHHHHHHHHh
Q 000837 870 GMLLEDEVYNMLIQGHCEANNL------RKVRELLSA-MIRKR--------------------LSLSISSYRNLVRWMCM 922 (1262)
Q Consensus 870 g~~pd~~t~~~ll~~~~~~g~~------~~a~~~~~~-~~~~~--------------------~~~~~~~~~~li~~~~~ 922 (1262)
....+...|-.+.++|.-.-.. .....++.. ....+ +..+...|..|+..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 1111222222222221100000 000000100 11111 11123333334333332
Q ss_pred ----cC----ChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCC
Q 000837 923 ----EG----GVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHK 994 (1262)
Q Consensus 923 ----~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 994 (1262)
.+ +...|+..+.+..+. ...+..+||.|.-. ..-|++.-|.-.|-+-... .+....+|..+...+.+..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecc
Confidence 11 123455556555443 12255666666554 4446666665555544433 1235567777777777888
Q ss_pred ChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhHHHHHHHH--HHH--cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 995 DVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGKSLELSQE--MRL--KGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 995 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~--~~~--~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
+++.|...|...+. +.|+ ...|-....+....|+.-++..+|.. ... .|--++..-|-.-.......|+.++-
T Consensus 865 d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 88999888888877 4553 34444444455567777777777775 222 23344444444444445566666655
Q ss_pred HHHHHHHHhC---------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcccCChhHHHHH
Q 000837 1070 EHFLDQIVDK---------DLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIISTCNKLDPAMDL 1139 (1262)
Q Consensus 1070 ~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~g~~~~A~~~ 1139 (1262)
+...+.+... +.+.+...|.......-..+.+..|.++..+++.- ..+-+..+|+......|++.-+..-
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 5544444321 22324677777777777778888888777765442 1133444444333223333333333
Q ss_pred HHHHHH-CCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 000837 1140 HAEMMA-RDLKPSMNTWHVLV--HKLCQEGRTTEAERLLISMVQLGD-TPT-QEMYSSVVNRYSLENNLGKASELMQAMQ 1214 (1262)
Q Consensus 1140 ~~~~~~-~~~~p~~~~~~~l~--~~~~~~g~~~~A~~l~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1214 (1262)
|++... .+..|-..-=.... -..+-.|+++++.+.|+++....- ..+ ......+++.....+..+.|...+-+..
T Consensus 1023 fe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1023 FESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred hhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 333322 12222111001111 112456888888888888886311 111 3444566666777778888888777777
Q ss_pred HcCCCCChhhHHHHHHHhhccccccc
Q 000837 1215 QSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1215 ~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
. ..|....+...|..++-....+.
T Consensus 1103 ~--ls~~~~~sll~L~A~~ild~da~ 1126 (1238)
T KOG1127|consen 1103 S--LSKVQASSLLPLPAVYILDADAH 1126 (1238)
T ss_pred H--hCccchhhHHHHHHHHHHhhhhh
Confidence 6 45555556666777766554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-07 Score=103.99 Aligned_cols=662 Identities=13% Similarity=0.029 Sum_probs=388.8
Q ss_pred CHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHH
Q 000837 542 DLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLE 619 (1262)
Q Consensus 542 ~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~ 619 (1262)
+...+...|-+.++..+... |..|...|+...+...|.++|++..+... .+...+....+.|+.... ++.|....-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~-we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEEST-WEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhcccc-HHHHHHHHH
Confidence 36677777777766655444 99999999998899999999999876422 245567778888888888 898888744
Q ss_pred HhhhhcCCC-ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC
Q 000837 620 KMPKLANKL-DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP 698 (1262)
Q Consensus 620 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 698 (1262)
...+..+.. -...|....-.|.+.++...|+.-|+...+..++ |...|..++.+|...|++..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 333322211 2344555556678899999999999999998776 8889999999999999999999999887763 35
Q ss_pred CcccHHHH--HHHHhhhCchHhHHHHHHHHHhhcCC------CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCCh
Q 000837 699 GLEDCKSL--VECLCHKKLLKESLQLFECMLVSCPC------LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQ 770 (1262)
Q Consensus 699 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~ 770 (1262)
+. +|... .-..|..|++.+|+..+..++..... .-...+......+..+|....+...++.-++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~------ 700 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES------ 700 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH------
Confidence 43 22222 23467889999999998887653221 11123333344455566666666666554332
Q ss_pred hhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCH---H---HHHHHHHHHhhcCCCchH
Q 000837 771 MAYSHLIRGLCKE----KKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRL---E---KAVALREISLKEQPLLLF 840 (1262)
Q Consensus 771 ~~~~~li~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~ 840 (1262)
..+.++...+.. --...|..+|-+.. .+ .|+......+..-....+.. | -+.+.+-.-.+ ...+.
T Consensus 701 -f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~ 775 (1238)
T KOG1127|consen 701 -FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHM 775 (1238)
T ss_pred -HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhcc
Confidence 111111111100 00123333343332 11 23333222222222222222 1 01111111111 11234
Q ss_pred HhHHHHHHHHhh----c----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhh
Q 000837 841 SFHSAFISGFCV----T----GKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISS 912 (1262)
Q Consensus 841 ~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 912 (1262)
.+|..++..|.+ . .+...|+..+++..+..- .+..+|+.|.-. ...|++.-+...|-.-.... +.+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 556666555544 1 223467778887766321 245566665544 66688888877776665553 335667
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--C--CCCCCHhhHHHHHH
Q 000837 913 YRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE--N--ELLPDEVTYNFLIY 988 (1262)
Q Consensus 913 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~--g~~pd~~~~~~li~ 988 (1262)
|..+.-.+.+..+++-|...|.......+ .+...|--........|+.-++..+|..-.+ . |--|+..-|.....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 88888888899999999999998887632 2677777777777778988888888876322 1 22344333333333
Q ss_pred HhhcCCChhHHHHHHHHHHHC---------CCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHH----
Q 000837 989 GFSKHKDVSSSKYYIAAMVSK---------GFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHDSIVQN---- 1054 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~---- 1054 (1262)
-....|+.++-+...+++... +.+.+...|.......-+.+.+.+|.+....++.. ...-+...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 445566666554444433321 33445667777777777777777777776654431 0122344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHH--HHcc--
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDS--IIST-- 1129 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~--ll~~-- 1129 (1262)
.....++..|.++.|..-+...... .+.....+-+ +..-.|+++++.+.|+++... +-..+.+...+ ++..
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 3344555666666555444332211 1111111111 113478999999999998874 22333222211 1122
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHh
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL---G--DTPTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~---~--~~p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
.+.-+.|...+-+.... -.|+..+...|.-.+.-..+-.....+.+++.+. . ..|.+.+ .--.|...|+-.
T Consensus 1088 ~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll---~e~i~~~~~r~~ 1163 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL---KELIYALQGRSV 1163 (1238)
T ss_pred cccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH---HHHHHHHhhhhH
Confidence 67778888777666651 3456666666666655444444333333433321 1 1122222 223477889988
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1205 KASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1205 ~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
...+.+++..- +.|.++..|++|..=|.
T Consensus 1164 ~vk~~~qr~~h--~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1164 AVKKQIQRAVH--SNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 89999999877 79999999999996333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-09 Score=115.55 Aligned_cols=382 Identities=11% Similarity=0.043 Sum_probs=221.5
Q ss_pred CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhH--
Q 000837 801 MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVY-- 878 (1262)
Q Consensus 801 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-- 878 (1262)
..-|...+......+-+.|....|+..|.......|- ...+|..|.... .+.+.+. .+.. +...|...+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHHH
Confidence 3445555555566667778888888888777654332 344444433322 2222221 1111 121111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CcchHHHHHHHHH
Q 000837 879 NMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSH--NLIIFNILVFHLM 956 (1262)
Q Consensus 879 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 956 (1262)
-.+..++....+.+++.+-.......|++-+...-+....+.....++|.|+.+|+++.+.++-. |..+|...+- .
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 12334555566777777777777777776666655666666667777777777777777763221 3444444432 2
Q ss_pred hcCCHHHHHHHHH-HHHH-CCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhH
Q 000837 957 SSGNIFHVKRVLD-ELQE-NELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGK 1033 (1262)
Q Consensus 957 ~~g~~~~A~~~~~-~m~~-~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 1033 (1262)
+..+-. +..+. .... .... ..|..++.+-|+-.++.++|..+|++.++. .|. ...|+.+..-|....+...
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHH
Confidence 222111 11111 1111 1122 234455555566666667777777776663 333 3344555556666667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1034 SLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1034 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
|++-++.+++- .+-|-..|..|.++|.-.+.+.=|+-.|+++.+ +.| |...|.+|..+|.+.++.++|++.|....
T Consensus 383 Ai~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 383 AIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77777766664 233566666677777777777777777776666 344 36667777777777777777777666665
Q ss_pred hCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-C
Q 000837 1113 KKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL----GD-TP-T 1186 (1262)
Q Consensus 1113 ~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~----~~-~p-~ 1186 (1262)
..| ..+...+..|+..|-+.++.++|.+.+++-++. |. .| .
T Consensus 460 ~~~---------------------------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 460 LLG---------------------------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred hcc---------------------------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 543 124456778888888888888888888777652 22 22 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcccc
Q 000837 1187 QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1187 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 1237 (1262)
..+..-|..-+.+.+++++|..+...... ..+.-+..-.+++.+.+...
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLK--GETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcC
Confidence 23333455667788888888887777666 37777778888887776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-10 Score=120.85 Aligned_cols=416 Identities=12% Similarity=0.029 Sum_probs=254.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 773 YSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPC-LDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 773 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
+.....-|.+.|++++|+++|.+.++. .|+ +..|.....+|...|+|++..+.-...++.+|. -+.++..=..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 444556777889999999999998875 456 677888888889999999998888888776554 3444555566777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CccChhhHHHHHHHHHhcCChhh
Q 000837 852 VTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK-R--LSLSISSYRNLVRWMCMEGGVPW 928 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~~~ 928 (1262)
+.|++++|+.-..-..-.+.--+..+ ..++.-.. -..|....++-.+. + .-|+.....+....+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~----- 264 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASI-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD----- 264 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-----
Confidence 78888877653333221111111111 11111111 11222222222221 1 223333333222221100
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHh--c---CCHHHHHHHHHHHHHCC-CCCCHh---------hHHHHH--HHhh
Q 000837 929 ALNLKELMLGQNKSHNLIIFNILVFHLMS--S---GNIFHVKRVLDELQENE-LLPDEV---------TYNFLI--YGFS 991 (1262)
Q Consensus 929 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g-~~pd~~---------~~~~li--~~~~ 991 (1262)
.......+.......+..++.. . ..+..|.+.+.+-.... ..++.. .-..++ .-+.
T Consensus 265 -------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 265 -------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred -------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000000001111111111111 1 12333333332211110 011111 111111 2234
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
-.|+.-.|.+-|+..++....++ ..|..+..+|....+.++-...|++..+.+ +-++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 56889999999999998533222 227777788999999999999999998853 2357788888888888899999999
Q ss_pred HHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCC
Q 000837 1072 FLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDL 1148 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~ 1148 (1262)
-|++.+. +.|. ...|..+.-+..+.+++++++..|++..++ ..-|...+|..-+-. .+++++|.+.|+..++ +
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 9999988 4554 778888888888899999999999999887 334555555444444 8999999999999987 4
Q ss_pred CCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1149 KPS-------MNTW--HVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1149 ~p~-------~~~~--~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
.|. +..+ ..++-.-.+ +++++|++++.++.+.+ +-..-.|..|+....+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 443 2222 222222233 89999999999999852 334677889999999999999999999987763
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-11 Score=137.12 Aligned_cols=256 Identities=12% Similarity=0.053 Sum_probs=153.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhc
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEV--TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEV 1028 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 1028 (1262)
..+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|...++.+.+.. | +...+..+...+...
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 334444555555555555544321 2221 22223444455555555555555555532 3 233444555556666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHhHHHHHHHHHHhcCChH
Q 000837 1029 GELGKSLELSQEMRLKGLVHDSIVQN---AIAEGLLSRGKLQEAEHFLDQIVDKDL---VPDTINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~ 1102 (1262)
|++++|.+.++.+.+.+..+...... .....+...+..+++.+.+..+.+... +.+...+..++..+...|+.+
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 66666666666665554322211111 111111222333334445555554311 125667777777778888888
Q ss_pred HHHHHHHHHHhCCCCCCHH-----HHHHHHcc-cCChhHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCCHHHHHH
Q 000837 1103 KAVDLLNIMLKKGSTPNSS-----SYDSIIST-CNKLDPAMDLHAEMMARDLKP-SM--NTWHVLVHKLCQEGRTTEAER 1173 (1262)
Q Consensus 1103 ~A~~~~~~~~~~~~~p~~~-----~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~ 1173 (1262)
+|.+.+++.+++ .|+.. .+...... .++.+.+.+.+++..+ ..| ++ .....+++.+.+.|++++|.+
T Consensus 281 ~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 281 SAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 888888887775 23333 22222222 5667778888888776 455 55 677899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.|+........|++..+.+++..+.+.|+.++|.++|++.+.
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999644444689998899999999999999999999998755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-10 Score=120.92 Aligned_cols=282 Identities=13% Similarity=0.046 Sum_probs=221.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHH
Q 000837 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVIS 1023 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 1023 (1262)
++.....-.+-+...+++.+..+++++..+.. ++....+..-|.++...|+..+-..+=.++++. .+-...+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 45555566677888899999999999998863 445556666677888999988888888888874 2335678888888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCh
Q 000837 1024 CLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1024 ~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 1101 (1262)
-|.-.|+..+|.++|.+.... .|. ...|-.....|.-.|..++|+..+..+.+. .|. ..-+--+..-|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccH
Confidence 888889999999999988763 444 668999999999999999999999888763 222 22333456678899999
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 000837 1102 DKAVDLLNIMLKK-GSTPNSSSYDSIIST-CNKLDPAMDLHAEMMAR--DLKP----SMNTWHVLVHKLCQEGRTTEAER 1173 (1262)
Q Consensus 1102 ~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 1173 (1262)
+.|.+.|...... ...|=+.....++.. .+.+.+|...|+..+.. ...+ =..+++.|+++|.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999998875 223333334444444 88999999999988731 1111 23568999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1174 LLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1174 l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
.+++.+.. .+-++.++.+++-.|...|+.+.|++.|.+.+. ++|++.++..+|+..-.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999986 366899999999999999999999999999998 89999888888775544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-10 Score=117.12 Aligned_cols=360 Identities=14% Similarity=0.070 Sum_probs=242.4
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhh--H
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISS--Y 913 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ 913 (1262)
..|...+-.....+-+.|....|+..|...... .| .-..|..|.... .+.+. ...+...+ ..+... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~----~~~l~~~l-~~~~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEI----LSILVVGL-PSDMHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHH----HHHHHhcC-cccchHHHH
Confidence 345655556666677888888999888887752 22 222333332222 22222 22222221 111111 1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhh
Q 000837 914 RNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL--LPDEVTYNFLIYGFS 991 (1262)
Q Consensus 914 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~ 991 (1262)
-.+..++-+....+++++-.+.....|++.+...-+....+.-...++++|+.+|+++.+... --|..+|..++..-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666678888888888888888776666666666667778889999999999888742 125567766654432
Q ss_pred cCCChhHHHHHHHHHHH--CCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 000837 992 KHKDVSSSKYYIAAMVS--KGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQE 1068 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 1068 (1262)
... .+.++.+-.- ..++| .|...+.+-|.-.++.++|..+|+...+. .|. ...|+.+.+-|...++.+.
T Consensus 311 ~~s----kLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 311 DKS----KLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred hhH----HHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHH
Confidence 221 1222222221 22333 56666777788888889999999988875 344 6788888888999999999
Q ss_pred HHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCC
Q 000837 1069 AEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARD 1147 (1262)
Q Consensus 1069 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~ 1147 (1262)
|++-++.+++- .| |-..|-.|..+|...+++.-|+-.|++..+
T Consensus 383 Ai~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------------------------- 426 (559)
T KOG1155|consen 383 AIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------------------------- 426 (559)
T ss_pred HHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh----------------------------------
Confidence 99999888874 44 678888888888888888888888877765
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----C-CCCC
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS----G-YSPD 1221 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~ 1221 (1262)
++| |+..|..|+.+|.+.++.++|++-++++...| ..+...+..|++.|.+.++.++|.+.+++-++. | ..|.
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 445 77899999999999999999999999999876 447788999999999999999999999998884 2 2332
Q ss_pred hhhHHHHHHHhhccccccccccchhhhhhhhc
Q 000837 1222 FSTHWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253 (1262)
Q Consensus 1222 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1253 (1262)
-..+...|++-....+.+. .+......++.
T Consensus 506 t~ka~~fLA~~f~k~~~~~--~As~Ya~~~~~ 535 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFD--EASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcchH--HHHHHHHHHhc
Confidence 3334555666555443333 33333444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=139.24 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=83.9
Q ss_pred hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHH
Q 000837 1015 NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLI 1092 (1262)
Q Consensus 1015 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 1092 (1262)
+.+|-++.++|.-+++.+.|++.|+..++. .| ...+|+.+..-+....++|.|...|+.++. +.|+ -.+|..|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLG 496 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhh
Confidence 344444444555555555555555544442 23 244444444444444445555555544443 2222 23344444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 000837 1093 KRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGR 1167 (1262)
Q Consensus 1093 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 1167 (1262)
..|.+.++++.|.-.|+++.+. .|......+.+.. .|+.|+|+.+++++.. +.| |+..-...+..+.-.++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcc
Confidence 4444555555555444444442 2222221111111 4444455555544443 333 33333444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+++|+..++++.+. ++.+...+..++.+|.+.|+.+.|+.-|--+.+
T Consensus 573 ~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 573 YVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 45555554444442 122244444444445555554444444444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-09 Score=107.70 Aligned_cols=490 Identities=12% Similarity=0.102 Sum_probs=295.3
Q ss_pred HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchH
Q 000837 638 QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLK 717 (1262)
Q Consensus 638 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 717 (1262)
+-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.+.. .|+...+..+..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455677888888888776654433233445557778889999999999999888754 577778888888888889999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 000837 718 ESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSML 797 (1262)
Q Consensus 718 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~ 797 (1262)
+|.++-.++ +.++.....|++.-.+.++-++-..+.+.+.
T Consensus 109 eA~~~~~ka----------------------------------------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 109 EAKSIAEKA----------------------------------------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred HHHHHHhhC----------------------------------------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 987776543 1133333344444455666666655555554
Q ss_pred hCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH-HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 798 DKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS-AFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 798 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+. .+--.+|.........+.+|++++.++...++. -...| -+.-+|.+..-++-+.++++--+++ .+-+..
T Consensus 149 D~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSti 220 (557)
T KOG3785|consen 149 DT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTI 220 (557)
T ss_pred hh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHH
Confidence 32 122233444444445678888888888765333 22222 2344667777788888888777663 222344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhc-----CChhhHHHHHHHHHhCCCCCCcchHHHH
Q 000837 877 VYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCME-----GGVPWALNLKELMLGQNKSHNLIIFNIL 951 (1262)
Q Consensus 877 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l 951 (1262)
..|.......+.=+-..|.+-.+++.+.+-.. ...+.-+++. .+-+.|++++-.+.+. -+..--.|
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL 291 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNL 291 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhh
Confidence 55555544445433344444444444432211 1122333333 4557788887666553 22233455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh-----hcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHH
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGF-----SKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCL 1025 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 1025 (1262)
+-.|.+.++..+|..+.+++.- ..|-......++.+- .......-|.+.|+-.-+.+..-|. .--.++..++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 6668899999999988776543 233333333332221 1122345566666666555554443 3345667777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 000837 1026 CEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
.-..++|+++.+++.+...-...|...+ .++++++..|++.+|+++|-+.....++-+..-...|.++|.+.|.++.|+
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 7778899999999999886444444444 478899999999999999988876555533444455668899999999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1106 DLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1106 ~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
+++-++- -+.+..+...+|.. ++.+--|-+.|+.+.. +.|+++.|. |+-.....+|..+...
T Consensus 449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHHHHHcC
Confidence 7765543 23344445555544 6666666777776664 677777773 4444444555555543
Q ss_pred CCCC-CHHHHHHHHHHHHhcCC
Q 000837 1182 GDTP-TQEMYSSVVNRYSLENN 1202 (1262)
Q Consensus 1182 ~~~p-~~~~~~~l~~~~~~~g~ 1202 (1262)
...| ..+.....+..+...++
T Consensus 515 ~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 515 KTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred CCCCCchhHHHHHHHHHHhCCC
Confidence 2222 22333344444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-07 Score=105.06 Aligned_cols=576 Identities=12% Similarity=0.062 Sum_probs=358.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc-CCCCCHhh
Q 000837 589 GQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR-GLTIENES 667 (1262)
Q Consensus 589 g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~ 667 (1262)
+..|....|..+-++ ++.+...+.+|+ ..|-..++.+.+.|++..-...|+..+.. -+.-....
T Consensus 76 ~~~~T~~~~~~vn~c-------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rI 140 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC-------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRI 140 (835)
T ss_pred ccCCCChHHHHHHHH-------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccc
Confidence 345555566555555 566666666663 46777788888899999999999888764 22223346
Q ss_pred HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcC------CCChhHHHHH
Q 000837 668 YTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCP------CLRSDICYIF 741 (1262)
Q Consensus 668 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~ 741 (1262)
|...+......+-++.+..++++..+.. | ..-...+..+++.+++++|.+.+...+..+. ..+...|..+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 7778888888888889999999887632 3 3467778888999999999999888765321 1222334433
Q ss_pred HHHHHhcC---CcccHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHH
Q 000837 742 LEKLCVTG---FSSNAHALVEELLQQGCNLDQ--MAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLF 816 (1262)
Q Consensus 742 l~~~~~~g---~~~~a~~~l~~~~~~g~~~d~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 816 (1262)
...+.++. ..-..-.+++..+.. -+|. ..|.+|.+.|.+.|.+++|..+|++.+..- .+..-++.+.++|.
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 33333332 233333333333322 2343 678889999999999999999998877642 23445555566665
Q ss_pred hcCCHHHHHHHHHHHhhcCCC-chHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-----------CCCHHhHHHHHHH
Q 000837 817 RTGRLEKAVALREISLKEQPL-LLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGM-----------LLEDEVYNMLIQG 884 (1262)
Q Consensus 817 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~pd~~t~~~ll~~ 884 (1262)
.-....-+..+= ...+.+.. -+.. +++-.+.-|+.+..... +.+..+|..-+..
T Consensus 293 ~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l 358 (835)
T KOG2047|consen 293 QFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL 358 (835)
T ss_pred HHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh
Confidence 432211111111 00001111 0111 12222333333333110 1133344333322
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCc----cChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---cchHHHHHHHHH
Q 000837 885 HCEANNLRKVRELLSAMIRK-RLS----LSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHN---LIIFNILVFHLM 956 (1262)
Q Consensus 885 ~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~ 956 (1262)
..|+..+....+.++++. ++. .-...|..+.+.|-..|+++.|..+|++..+...+.- ..+|-.-..+-.
T Consensus 359 --~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 --YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred --hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 356777888888888775 111 1123567778888889999999999998887654431 346777777778
Q ss_pred hcCCHHHHHHHHHHHHHCCCC----------C-------CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHH
Q 000837 957 SSGNIFHVKRVLDELQENELL----------P-------DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR 1019 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~----------p-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 1019 (1262)
++.+++.|+++.+......-. | +...|...++.--..|-++....+|+++++..+...... .
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~ 515 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-I 515 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-H
Confidence 888899999888776543111 1 123344444545556788888899999998655332222 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCH-hHH-HHHHH
Q 000837 1020 SVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSR---GKLQEAEHFLDQIVDKDLVPDT-INY-DNLIK 1093 (1262)
Q Consensus 1020 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~-~~~-~~l~~ 1093 (1262)
...-.+-...-++++.++++.-+..-..|+ ...|+..+.-+.+. ...+.|..+|++.++ |.+|.. .+. -....
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 223345566678899999988777644455 56788777666553 468999999999999 677652 222 22222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHcc----cCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHh
Q 000837 1094 RFCGYGRLDKAVDLLNIMLKKGSTPNS--SSYDSIIST----CNKLDPAMDLHAEMMARDLKPSMNT---WHVLVHKLCQ 1164 (1262)
Q Consensus 1094 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 1164 (1262)
.=-+.|-...|+.++++.-.. .++.. ..|+..|.. .| +..-..+|++.++ .-|+... .-.++..-++
T Consensus 595 lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE--SLPDSKAREMCLRFADLETK 670 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhh
Confidence 223468888999999996654 44443 347777765 33 4456789999997 4665443 3445556778
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 000837 1165 EGRTTEAERLLISMVQL-GDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1165 ~g~~~~A~~l~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
.|..+.|..++...-+. ....+...|.+.=.--.++|+-+--.+.
T Consensus 671 lGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999988774 2233688888887778899995443333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-10 Score=131.74 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCCh
Q 000837 955 LMSSGNIFHVKRVLDELQENELLPDEVTYN--FLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGEL 1031 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 1031 (1262)
..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+. .| +...+..+...|.+.|++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhH
Confidence 35566666666666666553 33332222 2234556666677777776666663 23 334455566666777777
Q ss_pred hHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 000837 1032 GKSLELSQEMRLKGLVHDS-------IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKA 1104 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 1104 (1262)
++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777665433221 12233333333444455555666655432 233566777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 1105 VDLLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLG 1182 (1262)
Q Consensus 1105 ~~~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~ 1182 (1262)
.+.+++..+. .|+.......... .++.+++++..++..+ ..| |+..+..++..|.+.|++++|.+.|+.+.+
T Consensus 283 ~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-- 356 (398)
T PRK10747 283 QQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-- 356 (398)
T ss_pred HHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 8888888774 3444322222222 5788888888888876 455 667788999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1183 DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1183 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..|+...+..++.++.+.|+.++|.++|++.+.
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 579999888999999999999999999998765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-07 Score=105.10 Aligned_cols=164 Identities=13% Similarity=0.156 Sum_probs=101.2
Q ss_pred cHHHHHHHHhhhCchHhHHHHHHHHHhhcCC-CChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 000837 702 DCKSLVECLCHKKLLKESLQLFECMLVSCPC-LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGL 780 (1262)
Q Consensus 702 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~ 780 (1262)
.|...+..+.++|++......|+.++..-|. ....+|-..+.-+...|-.+.+..+++..++. ++..-+.-|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555556666667777777777666654433 34456666666666667777777777766554 444466667777
Q ss_pred HhcCCHHHHHHHHHHHhhC------CCCCChhcHHhHHHHHHhcCCH---HHHHHHHHHHhhcCCCchHHhHHHHHHHHh
Q 000837 781 CKEKKFSVAFKMLDSMLDK------NMAPCLDVSVSLIPQLFRTGRL---EKAVALREISLKEQPLLLFSFHSAFISGFC 851 (1262)
Q Consensus 781 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 851 (1262)
++.+++++|-+.+...+.. ..+.+...+..+.+...+.-+. -...+++..+.......-...|++|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7777777777777766531 1133444555555555544322 223344555554444444567888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 000837 852 VTGKAEEASKLFRDMLSQ 869 (1262)
Q Consensus 852 ~~g~~~~A~~~~~~m~~~ 869 (1262)
+.|.++.|.++|++...+
T Consensus 260 r~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 888888888888887663
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-13 Score=144.79 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=73.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCChHHHH
Q 000837 1027 EVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD-LVPDTINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
..+++++|.++++...+. .+++..+..++..+...++++++..+++++.... ..++...|..+...+.+.|++++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444443332 1233334444444444444555444444443221 1223444444444445555555555
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1106 DLLNIMLKKGSTPNSS-SYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1106 ~~~~~~~~~~~~p~~~-~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
+.+++.++. .|+.. ....++.. .|+.+++.++++...+. ...++..|..++.+|...|+.++|...+++..+.
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 555554443 23211 11112111 44444444444444431 1335567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1182 GDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1182 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.+.|+.....+++++...|+.++|.++++++.+
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -STT-HHHHHHHHHHHT-----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 255788888999999999999999999888765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-11 Score=134.95 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=155.7
Q ss_pred CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 000837 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAI 1056 (1262)
Q Consensus 979 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l 1056 (1262)
...+|.++.++|.-+++.+.|++.|++.++ +.| ..++|+.+..-+.....+|.|...|+..+.. .| +-..|.-|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhh
Confidence 457888888888888888888888888887 456 5677777777788888888888888888763 22 24566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHcccCCh
Q 000837 1057 AEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY--DSIISTCNKL 1133 (1262)
Q Consensus 1057 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~~g~~ 1133 (1262)
.-.|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|+++++++.....+-...-| ..++...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 8889999999999999999988 5664 667777788889999999999999998875322222222 2233338999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 1134 DPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP 1185 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p 1185 (1262)
++|+..++++.+ +.| +...+..++..|.+.|+.+.|+.-|.-|.+...++
T Consensus 574 ~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 574 VEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999987 777 56788999999999999999999999998864433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-07 Score=107.05 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSII 1127 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll 1127 (1262)
|......+.+.+..++|...+.++... .| ....|......+...|..++|.+.|...+.. .|+.+- ...++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 334444444444444554444444432 22 2334444444444455555555555444442 222111 11111
Q ss_pred cccCChhHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1128 STCNKLDPAMD--LHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1128 ~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
...|+..-|.+ ++..+.+ +.| ++..|..++..+-+.|+.++|-+-|+.+.+.
T Consensus 729 le~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 11333333333 5555554 556 7889999999999999999999999998875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-06 Score=96.27 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=143.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
..|..|.++|.+..|.+.-..-.+ +..+......+..++.+..-|+.|-.+|++... +..-+..+.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d------------~dkale~fk 685 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD------------FDKALECFK 685 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC------------HHHHHHHHH
Confidence 456667777777776655432221 123555666677777777777777777776532 222233333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHH
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFN-EVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFV 377 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 377 (1262)
+-.-+..|.++-+-. +|..+++.. .-..-+...|.++.|..-|-+..+ .-.-|.+-.....+.+|.-++
T Consensus 686 kgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred cccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------HHHHHHHHhhhhhhhhhHhHH
Confidence 333444555444332 233333322 123345566777777777766621 122355556677788888888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 000837 378 QELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITP 457 (1262)
Q Consensus 378 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 457 (1262)
+.+.++. .-.-.|..+...|...|+++.|.++|.+. -.++--|.+|.+.|+++.|.++-++.. |.+.
T Consensus 756 dniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 8777653 22345777788888999999999988753 234567888999999999988876664 3455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000837 458 SLSTYRILLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 458 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 485 (1262)
..+.|-+-..-+-+.|++.+|.+++-.+
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 6677777777788888888888877443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=125.64 Aligned_cols=288 Identities=12% Similarity=0.048 Sum_probs=225.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNL-IQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
....-.|+++.|++.+....+.. +++..+..+ ..+-.+.|+++.|...|.++.+..+.+.....-.....+...|+
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC
Confidence 33344699999998888765543 234555544 34448899999999999999886443322222234678889999
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCC
Q 000837 265 THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS-------LVFNEVAYGYCEKKD 337 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~ 337 (1262)
+++|...++++.+..+. +......+...+.+.|++++|..++.++.+.+..++. .+|..++.......+
T Consensus 169 ~~~Al~~l~~~~~~~P~----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 6778889999999999999999999999997754322 133344444445556
Q ss_pred HHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 338 ~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
.+...++++.. ..+.++.....+...+...|+.++|.+.+++..+. .||.. -.++.+.+..++.+++.+..+..
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHH
Confidence 77777888887 44567788899999999999999999999998874 45542 22344555679999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 416 LSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 416 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
.+..+ -|...+..+...+.+.|++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 321 lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98854 36677889999999999999999999999986 69999999999999999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-10 Score=127.44 Aligned_cols=294 Identities=11% Similarity=-0.000 Sum_probs=216.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 185 ALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 185 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
+.+....|+++.|.+.+.+..+.. +.....+.....++...|++++|...|.+..+..+.+.....-.....+...|+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 334457899999999999887764 333444556677888899999999999998776444333344445788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCH---
Q 000837 265 THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGY---CEKKDF--- 338 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~--- 338 (1262)
++.|...++++.+..+. +...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..
T Consensus 169 ~~~Al~~l~~l~~~~P~----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPR----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 56788899999999999999999999999987543332211111111 222232
Q ss_pred -HHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHH
Q 000837 339 -EDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEIT---FGILIGWTCREGNLRSALVFF 412 (1262)
Q Consensus 339 -~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~~~ 412 (1262)
+.....+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... ........+..++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3333333333 122478889999999999999999999999999864 44432 122222334468889999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000837 413 SEILSRGLNPDV--HTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 413 ~~m~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
+...+..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888877322 33 456688889999999999999999533333468999999999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-07 Score=99.84 Aligned_cols=310 Identities=13% Similarity=0.096 Sum_probs=232.4
Q ss_pred hcCChhhHHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhcCCChhHH
Q 000837 922 MEGGVPWALNLKELMLGQN-KSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVT-YNFLIYGFSKHKDVSSS 999 (1262)
Q Consensus 922 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~A 999 (1262)
-.++...|...+--+.... ++.|......+...+...|+..+|+..|++.... .|+..+ .......+.+.|+++..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 3455555555554444332 4447778888999999999999999999988764 333322 12222234577888888
Q ss_pred HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 1000 KYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDK 1079 (1262)
Q Consensus 1000 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 1079 (1262)
..+...+.... +-+...|..-+..+...+++..|+.+-++.++.. +.+...+-.-...+...|++++|.-.|..++.
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 77777777631 2233344444455667789999999999988753 22355666667888999999999999999887
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH----cc--cCChhHHHHHHHHHHHCCCCCC-
Q 000837 1080 DLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII----ST--CNKLDPAMDLHAEMMARDLKPS- 1151 (1262)
Q Consensus 1080 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~--~g~~~~A~~~~~~~~~~~~~p~- 1151 (1262)
+.| +...|..|+..|...|+..+|.-+-+...+. -|...--..++ .. ..--++|.+++++.++ ++|+
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 455 5889999999999999999999888777664 22222222222 22 4457899999999986 7885
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
......++..+...|++++++.++++.+. ..||...-+.|++.+...+.+++|.+.|..++. ++|.+.....-+.-
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHH
Confidence 45678889999999999999999999997 589999999999999999999999999999999 79999999999999
Q ss_pred hhccccccccccch
Q 000837 1232 LRNSNDKDNNRNSQ 1245 (1262)
Q Consensus 1232 l~~~~~~~~~~~~~ 1245 (1262)
+-++.+..+++++.
T Consensus 514 lEK~~~~~DATdE~ 527 (564)
T KOG1174|consen 514 LEKSDDESDATDES 527 (564)
T ss_pred HHhccCCCCccccc
Confidence 98877766665443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-12 Score=138.77 Aligned_cols=262 Identities=18% Similarity=0.143 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHcc
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKK 643 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 643 (1262)
.+...+.+.|++++|++++.+.......|+...|..++..++...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4456667777777777777554443324455555555554554444477777777776655433 45556666655 577
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC-CCCCcccHHHHHHHHhhhCchHhHHHH
Q 000837 644 GLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK-WLPGLEDCKSLVECLCHKKLLKESLQL 722 (1262)
Q Consensus 644 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 722 (1262)
+++++|.++++...+.. +++..+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888887777665542 355566667777777788888888777766432 234566667777777777777777777
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 000837 723 FECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMA 802 (1262)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 802 (1262)
++++++..|+ |......++..+...|+.+++..+++...+.. +
T Consensus 169 ~~~al~~~P~------------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 169 YRKALELDPD------------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHHHH-TT-------------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHcCCC------------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 7777776666 55666666666666677766666666665543 3
Q ss_pred CChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 000837 803 PCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDML 867 (1262)
Q Consensus 803 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 867 (1262)
.+...+..+..++...|+.++|...+++.....+. |......+..++.+.|+.++|.++.+++.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 34445556666666667777777776666655443 55555566666666777777666665544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-07 Score=99.89 Aligned_cols=431 Identities=15% Similarity=0.122 Sum_probs=221.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHH
Q 000837 399 TCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEA 478 (1262)
Q Consensus 399 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 478 (1262)
|...+++...+.+.+.++++ ..-...|.....-.+...|+-++|......-....++ +.+.|.++.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34667778888888877774 2223344444434456678888888877766665443 567788877777777888888
Q ss_pred HHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCC
Q 000837 479 KIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSM 558 (1262)
Q Consensus 479 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~ 558 (1262)
++.+......+. .|...+..+...-...+++......-.+.++..+
T Consensus 95 iKcy~nAl~~~~----------------------------------dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 95 IKCYRNALKIEK----------------------------------DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHHHhcCC----------------------------------CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 888888877664 3444555444444555666666666666655554
Q ss_pred CCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHH
Q 000837 559 IPN--FNSLIKMVHARGNLKAALLLVDEMVRWG-QELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNL 635 (1262)
Q Consensus 559 ~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 635 (1262)
... |..++.++.-.|+...|..++++..+.. ..|+...+......+.+
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------------------- 191 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------------------- 191 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-----------------------------
Confidence 444 7888888888999999999999887653 24555544333222111
Q ss_pred HHHHHHccCChHHHHHHHHHHhhcCCCCCHhh-HHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHH-HHHHhhh
Q 000837 636 LIQACCKKGLVRDGKKIFDGMLQRGLTIENES-YTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSL-VECLCHK 713 (1262)
Q Consensus 636 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~ 713 (1262)
.....+.|..+.|++.+..-... +. |-.. -.+-...+.+.+++++|..++..++... ||...|... ..++.+-
T Consensus 192 -n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 192 -NQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKI 266 (700)
T ss_pred -HHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHH
Confidence 11233455555555555443322 11 2222 2233444556666666666666666654 544444333 3333222
Q ss_pred CchHhHH-HHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 000837 714 KLLKESL-QLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKM 792 (1262)
Q Consensus 714 g~~~~A~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~ 792 (1262)
.+--+++ .+|...-+..|. .......-+..+......+...+.+..+++.|+++- +..+...|-.....+-..++
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~L 342 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKL 342 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHH
Confidence 2222222 333333222222 111111111111112223334445555666665543 23333333222211111111
Q ss_pred HHHHhh----CCC----------CCCh--hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH
Q 000837 793 LDSMLD----KNM----------APCL--DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA 856 (1262)
Q Consensus 793 ~~~~~~----~~~----------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 856 (1262)
.-.+.. .|. +|.. .++..++..+-+.|+++.|...++.....-|+ -+..|..=.+.+...|++
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLL 421 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCCh
Confidence 111111 110 2222 23344556666667777777766666654222 122333334556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 857 EEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 857 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
++|...+++..+.+. +|...-.--..-..+.++.++|.++.....+.|
T Consensus 422 ~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 422 DEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 666666666665322 232222123333345566666666666655554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-08 Score=100.59 Aligned_cols=445 Identities=11% Similarity=0.023 Sum_probs=256.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCch
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVT 265 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~ 265 (1262)
.-+...++|..|+.+++.-...+-+-. ..+-.++...|...|++++|+.+|.-+.+.. .|+...+-.+..++.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445556788888888876554432211 1344468888999999999999999887643 45566677777788888999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 266 HLAFRVCVDMVVMGNNLTDLEKDSFHD-VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSF 344 (1262)
Q Consensus 266 ~~A~~~~~~m~~~g~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 344 (1262)
.+|..+-.+. |+...... +...--+.++-.+-..+.+.+.+ .....-+|.........+.+|+++
T Consensus 108 ~eA~~~~~ka---------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 108 IEAKSIAEKA---------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHhhC---------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9998876655 44444444 44445566887777777777643 234445666666667788999999
Q ss_pred HHHc-CCCCCcccHHH-HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 000837 345 FTEM-KCTPDVLAGNR-IIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNP 422 (1262)
Q Consensus 345 ~~~~-~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 422 (1262)
+.++ ...|.-...|. +.-+|.+..-++-+.+++.-..+. ++.+.+.-|....-..+.=+-..|..-..++...+-.
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~- 251 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ- 251 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-
Confidence 9998 44566655554 455667777788888888776654 2333445554444444433333444444555444311
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccc
Q 000837 423 DVHTYNSLISGMFKE-----GMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLE 497 (1262)
Q Consensus 423 ~~~~y~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 497 (1262)
. -..+.-+++. ..-+.|.+++-.+.+. .|.. ---|+-.|.+.+++.+|..+.+++.-..
T Consensus 252 ~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~Ptt-------- 315 (557)
T KOG3785|consen 252 E----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTT-------- 315 (557)
T ss_pred c----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCC--------
Confidence 1 1122222322 2336677766555542 3332 2234556777888888887776543111
Q ss_pred hhhhhHHHhcCCChhhhhhccccccCCCchhh-----HHhhhhhhccCCCHHHHHHHHHHHhhc----CCCCChHHHHHH
Q 000837 498 DPLSKGFMILGLNPSAVRLRRDNDMGFSKVEF-----FDNLGNGLYLDTDLDEYERKLSKIIED----SMIPNFNSLIKM 568 (1262)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~~~~li~~ 568 (1262)
|-... +..++.-......+.-|.+.|+-+-.. +..|...++..+
T Consensus 316 ---------------------------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 316 ---------------------------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred ---------------------------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 22211 222222222222233333333222111 112223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHH
Q 000837 569 VHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRD 648 (1262)
Q Consensus 569 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 648 (1262)
+.-.-+ ++++...+..+..--...|...+| +.++++..|++.+
T Consensus 369 fFL~~q------------------------------------FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 369 FFLSFQ------------------------------------FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred HHHHHH------------------------------------HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHH
Confidence 333333 455555555444333333444444 5678888889999
Q ss_pred HHHHHHHHhhcCCCCCHhhHHH-HHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHH-HHHHHhhhCchHhHHHHHHHH
Q 000837 649 GKKIFDGMLQRGLTIENESYTT-LLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKS-LVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 649 A~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~ 726 (1262)
|.++|-++....++ |..+|.. |.++|.+++.++.|+.++-.+ +.+.+..+... +.+-|.+.+.+--|.+.|+.+
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99988777665555 5666654 557788888888887665433 32233333333 345566777777777777776
Q ss_pred HhhcCC
Q 000837 727 LVSCPC 732 (1262)
Q Consensus 727 ~~~~~~ 732 (1262)
...+|.
T Consensus 488 E~lDP~ 493 (557)
T KOG3785|consen 488 EILDPT 493 (557)
T ss_pred HccCCC
Confidence 666555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-09 Score=107.99 Aligned_cols=302 Identities=13% Similarity=0.076 Sum_probs=219.1
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhh
Q 000837 775 HLIRGLCK--EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCV 852 (1262)
Q Consensus 775 ~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 852 (1262)
.+..++.+ .|+|.+|+++..+..+.+-.| ...|..-+.+.-..|+.+.|-..+.+..+....++....-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445544 799999999999988776554 456666777888999999999999999888667777778888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHH
Q 000837 853 TGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNL 932 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 932 (1262)
.|+...|..-+.++.+.+.. .........++|.+.|++.....++..+.+.|.-.+...-..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-----------------
Confidence 99999999999999986654 566788889999999999999999999998876544321110
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCC
Q 000837 933 KELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFN 1012 (1262)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 1012 (1262)
...+|+.+++-....+..+.-...|+....+ .+-+...-..++.-+.+.|+.++|.++..+..+++..
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 0112333433333333333334455554433 3334555566667777888888888888888887766
Q ss_pred CChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 000837 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLI 1092 (1262)
Q Consensus 1013 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 1092 (1262)
|+. .. .-.+.+.++...-++..++..+. .+.++-.+.+|...|.+.+.+.+|.+.|+..++ ..|+..+|+.+.
T Consensus 296 ~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la 368 (400)
T COG3071 296 PRL---CR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELA 368 (400)
T ss_pred hhH---HH-HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHH
Confidence 651 11 12345567777777777766654 344567888888888888999999999987776 578888888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 000837 1093 KRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1093 ~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
.++.+.|++++|.+..++.+..
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999888888877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-08 Score=107.43 Aligned_cols=276 Identities=14% Similarity=0.074 Sum_probs=189.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHcc
Q 000837 564 SLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKK 643 (1262)
Q Consensus 564 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 643 (1262)
.-.+-+...+++.+..++++++.+.. ++....+..-|.++...++ ..+-.-+-.++++..+. .+.+|-++...|.--
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHhCCC-CCcchhhHHHHHHHh
Confidence 34555677788888888888887752 3445555566667766666 44444444455554333 778888888888888
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCC-CcccHHHHHHHHhhhCchHhHHHH
Q 000837 644 GLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLP-GLEDCKSLVECLCHKKLLKESLQL 722 (1262)
Q Consensus 644 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 722 (1262)
|+..+|.+.|.+....+.. =...|-.+...|.-.|.-+.|...+....+. .| ....+.-+.--|.+.++++.|.++
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 9999999999888765433 2446778888888888888888888776553 12 111222333446677888888888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 000837 723 FECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK--- 799 (1262)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 799 (1262)
|.++....|. |+...+.+.-..-+.+.+.+|..+|+..+..
T Consensus 403 f~~A~ai~P~------------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 403 FKQALAIAPS------------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHhcCCC------------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 8887766665 6777777766666777888888888776521
Q ss_pred -C--CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 000837 800 -N--MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE 876 (1262)
Q Consensus 800 -~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 876 (1262)
+ ......+++.|.++|.+.+.+++|+..+++.+...+. +..++.++.-.|...|+++.|.+.|.+.+- +.|+..
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 0 1123446777788888888888888888887776555 777778888888888888888888888776 667766
Q ss_pred hHHHHHHH
Q 000837 877 VYNMLIQG 884 (1262)
Q Consensus 877 t~~~ll~~ 884 (1262)
+...++..
T Consensus 524 ~~~~lL~~ 531 (611)
T KOG1173|consen 524 FISELLKL 531 (611)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-09 Score=108.41 Aligned_cols=285 Identities=14% Similarity=0.096 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CccC--hhhHHHHHHHHHhcCChhhH
Q 000837 853 TGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR-LSLS--ISSYRNLVRWMCMEGGVPWA 929 (1262)
Q Consensus 853 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A 929 (1262)
+++.++|.+.|-+|.+... -...+--+|.+.|-+.|..+.|+.+++.+.++- ...+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4567777777777776221 123344566667777777777777777777651 1111 12334556677777888888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDE----VTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888887776421 13445667788888888899998888888876543332 2234444555566788888888888
Q ss_pred HHHCCCCCChhcHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 000837 1006 MVSKGFNPSNRSLR-SVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD 1084 (1262)
Q Consensus 1006 m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 1084 (1262)
..+. .|+.+--+ .+.+.+...|+++.|++.++...+.+..--+.+...|..+|...|+.++.+.++.++.+. .+.
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 8874 34433333 355578888888888888888888643333677788888888888888888888888874 333
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc------cCChhHHHHHHHHHHH
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST------CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~g~~~~A~~~~~~~~~ 1145 (1262)
...-..+........-.+.|...+.+-+.. +|+...+..++.. .|...+.+.++.+|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 334444544444455556666666665554 6888877777766 4556666666666664
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-09 Score=107.57 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcc------cHHHHHHHHhhhCch
Q 000837 643 KGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLE------DCKSLVECLCHKKLL 716 (1262)
Q Consensus 643 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~ 716 (1262)
....++|.++|-+|.+.... +..+--+|.+.|-+.|..+.|+.+.+.+.++ ||.. ....+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 45678888888888875333 4445567778888888888888888877764 3322 122233334444445
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 717 KESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSM 796 (1262)
Q Consensus 717 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~ 796 (1262)
|.|.++|. .+.+.+ ..-....-.|+..|-+..+|++|++.-+++
T Consensus 124 DRAE~~f~-----------------------------------~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 124 DRAEDIFN-----------------------------------QLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred hHHHHHHH-----------------------------------HHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55544444 443322 112345667788888888999999888888
Q ss_pred hhCCCCCCh----hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 000837 797 LDKNMAPCL----DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGML 872 (1262)
Q Consensus 797 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 872 (1262)
.+.+..+.. ..|..+...+....+++.|..++.+..+.+++ .+.+--.+.+.+...|+++.|.+.++...+++..
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 776544332 24555666666677888888888888777655 4444456677788888888888888888887655
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 873 LEDEVYNMLIQGHCEANNLRKVRELLSAMIRKR 905 (1262)
Q Consensus 873 pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 905 (1262)
--+.+...|..+|...|+.++....+..+.+..
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 455667778888888888888888888877763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-08 Score=107.25 Aligned_cols=294 Identities=10% Similarity=0.047 Sum_probs=180.0
Q ss_pred cCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 000837 888 ANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRV 967 (1262)
Q Consensus 888 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 967 (1262)
.|+|.+|++......+.+-.| ...|..-+.+.-..|+.+.+-..+.++.+....++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777776655554322 2233344455555566666666666666554444455555555555666666666655
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000837 968 LDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLV 1047 (1262)
Q Consensus 968 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 1047 (1262)
.+++.+.+.. +.........+|.+.|++.....+..++.+.|.-.+...- .
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------
Confidence 5555554322 2334444555555555555555555555554432221100 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000837 1048 HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSII 1127 (1262)
Q Consensus 1048 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 1127 (1262)
....+|+.+++-....+..+.-...++....+ .+-++..-.+++.-+...|+.++|.++..+.++++..|....+..-+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 01234555555444444444444455554432 23344555666777778888888888888888777666632222211
Q ss_pred cccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1128 STCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1128 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
. -++.+.-++..++-.+. ...++..+..|+..|.+.+.+.+|...|+.+.+ ..|+.+.|..+++++.+.|+..+|.
T Consensus 306 ~-~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 306 R-PGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred C-CCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence 1 45555555555555541 223567899999999999999999999998887 6899999999999999999999999
Q ss_pred HHHHHHHHc
Q 000837 1208 ELMQAMQQS 1216 (1262)
Q Consensus 1208 ~~~~~~~~~ 1216 (1262)
++++..+-.
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 999988754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=129.78 Aligned_cols=247 Identities=11% Similarity=0.005 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhc
Q 000837 192 GMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVG---------VGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM 262 (1262)
Q Consensus 192 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~ 262 (1262)
+.+++|..++++.++.. |.++..|..+..+|.. .+++++|...+++..+.++. +..+|..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 34677888888877665 6667777766665542 23477888888888877655 667777787888888
Q ss_pred CchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 263 KVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLL 342 (1262)
Q Consensus 263 ~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 342 (1262)
|++++|...|+++++.++. +...+..+..++...|++++|...++++++.. +.+...+..++..+...|++++|+
T Consensus 352 g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHH
Confidence 8888888888888887743 45567777778888888888888888887765 223333334444566678888888
Q ss_pred HHHHHc--CCCCC-cccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 343 SFFTEM--KCTPD-VLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI-TFGILIGWTCREGNLRSALVFFSEILSR 418 (1262)
Q Consensus 343 ~~~~~~--~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~ 418 (1262)
..+++. ..+|+ ...+..+..++...|++++|...+.++... .|+.. ..+.+...++..| +.|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 888877 22343 334667777788888888888888876654 34433 3444555666666 4777767766643
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 419 -GLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 419 -g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
.-.|.......++ |.-.|+-+.+..+ +++.+.
T Consensus 503 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 503 EQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhcc
Confidence 2222222333333 3345666666666 777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-06 Score=98.15 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.|+..++..+-..|+++.|..+.+..+.+ .|+. ..|..-.+.+...|.+++|..++++..+.+ .+|..+=.--+.-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 34455677778888888888888888774 5553 344455567788888888888888887753 3344443355556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh--------HHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTI--------NYDNL--IKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
..+.++.++|..+.....+.|. +.. .|..+ ..+|.+.|++..|++-|....+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6677888888888877776653 111 22222 3567777788777777666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-06 Score=96.03 Aligned_cols=257 Identities=15% Similarity=0.112 Sum_probs=135.7
Q ss_pred CHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------Cc
Q 000837 388 DEITFGILIG--WTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR-G--------IT 456 (1262)
Q Consensus 388 ~~~ty~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~ 456 (1262)
|..|--.+++ .|...|++|.|.+-.+.++ +...|..+..+|++..+++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4556666654 3556788888877766654 3356777888888887777777777766642 1 11
Q ss_pred cC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhh
Q 000837 457 PS-LSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGN 535 (1262)
Q Consensus 457 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 535 (1262)
|+ ...-.+. .-...|.+++|..++++-.+.+ .+-.
T Consensus 799 ~~e~eakvAv--LAieLgMlEeA~~lYr~ckR~D------------------------------------------LlNK 834 (1416)
T KOG3617|consen 799 GEEDEAKVAV--LAIELGMLEEALILYRQCKRYD------------------------------------------LLNK 834 (1416)
T ss_pred CcchhhHHHH--HHHHHhhHHHHHHHHHHHHHHH------------------------------------------HHHH
Confidence 21 1111111 1234566777777776655432 2333
Q ss_pred hhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHH
Q 000837 536 GLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACT 615 (1262)
Q Consensus 536 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~ 615 (1262)
.|...|.+++|.++-+.--+-.....|.....-+-.+++.+.|++.|++... |--.+...|.. + +....
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~e-~------p~~~e 903 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLKE-Y------PKQIE 903 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHh-C------hHHHH
Confidence 4445566666666655444334444455556666667777777777766421 11111111110 0 22222
Q ss_pred HHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 000837 616 GLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 695 (1262)
++.+.+. |...|.=-...+-..|+.+.|+.++....+ |-++.+..|-.|+.++|..+-++-
T Consensus 904 ~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---- 964 (1416)
T KOG3617|consen 904 QYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---- 964 (1416)
T ss_pred HHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----
Confidence 2222221 222222223333456666666666665543 344555666666666666655432
Q ss_pred CCCCcccHHHHHHHHhhhCchHhHHHHHHHH
Q 000837 696 WLPGLEDCKSLVECLCHKKLLKESLQLFECM 726 (1262)
Q Consensus 696 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 726 (1262)
-|...+-.+...|...|++.+|+.+|-++
T Consensus 965 --gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 965 --GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23444555666666666666666666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-11 Score=90.70 Aligned_cols=49 Identities=33% Similarity=0.566 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 352 PDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTC 400 (1262)
Q Consensus 352 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 400 (1262)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-11 Score=90.19 Aligned_cols=49 Identities=51% Similarity=0.849 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 000837 422 PDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYC 470 (1262)
Q Consensus 422 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 470 (1262)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-06 Score=94.41 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 000837 562 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACC 641 (1262)
Q Consensus 562 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 641 (1262)
|..-..-.-..|+.+.|+.+|..... |-++++..|-.|+ .++|.++-++-. |....-.|...|-
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk-~~kAa~iA~esg------d~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK-TDKAARIAEESG------DKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC-chHHHHHHHhcc------cHHHHHHHHHHhh
Confidence 33333344456777777777766543 4455566666666 777766665542 4455556667777
Q ss_pred ccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC-chHhHH
Q 000837 642 KKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKK-LLKESL 720 (1262)
Q Consensus 642 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~ 720 (1262)
..|++.+|...|.+.. ++...|+. ||.++.++-+.-+..|. + .........-|...| ..+.|.
T Consensus 979 n~g~v~~Av~FfTrAq---------afsnAIRl-cKEnd~~d~L~nlal~s--~----~~d~v~aArYyEe~g~~~~~AV 1042 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ---------AFSNAIRL-CKENDMKDRLANLALMS--G----GSDLVSAARYYEELGGYAHKAV 1042 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHH-HHhcCHHHHHHHHHhhc--C----chhHHHHHHHHHHcchhhhHHH
Confidence 7777777777776653 34444443 34444433222222211 1 111112222233333 444444
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 000837 721 QLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKN 800 (1262)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 800 (1262)
.+|.++- .+...+....++.++ .|++++.+= .....|+...+.-.+.++...++++|..++-...+..
T Consensus 1043 mLYHkAG---------m~~kALelAF~tqQf-~aL~lIa~D--Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1043 MLYHKAG---------MIGKALELAFRTQQF-SALDLIAKD--LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred HHHHhhc---------chHHHHHHHHhhccc-HHHHHHHHh--cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444320 000111111111111 111211111 1223456666666677777777777777665554311
Q ss_pred CCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhc-CCCchH----HhHHHHHHHHhhcCCHHHHHHHHHHH
Q 000837 801 MAPCLDVSVSLIPQLFRTGRLEKAVALREISLKE-QPLLLF----SFHSAFISGFCVTGKAEEASKLFRDM 866 (1262)
Q Consensus 801 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 866 (1262)
. .-.+|+..++.-..++-+.|... ...|+. .....+...+.+.|.+..|-+-|-+.
T Consensus 1111 ---------~-AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1111 ---------G-ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred ---------H-HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 0 11233344444444444444221 122222 23444556666777777666655543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-08 Score=104.84 Aligned_cols=237 Identities=14% Similarity=0.093 Sum_probs=173.1
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHH
Q 000837 982 TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD------SIVQNA 1055 (1262)
Q Consensus 982 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~ 1055 (1262)
-+..+.++..+..+++.|++-+...++. .-+..-++....+|...|.+.+.........+.|-..- ......
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888888874 33333344555578888888888877777766543210 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHcc--cC
Q 000837 1056 IAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS--SYDSIIST--CN 1131 (1262)
Q Consensus 1056 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~--~g 1131 (1262)
+..+|.+.++++.|+..|++.+.....|+. ..+....+++++..+...-. .|+.. ........ .|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 455777788999999999998875445442 23445566666666555443 33332 22222222 89
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1132 KLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1132 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
++..|+..|.++++. .| |...|.+.+-+|.+.|.+..|++=.+...+.. ++....|..-+.++....+|++|.+.|
T Consensus 373 dy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 46 77889999999999999999999999998862 445788888899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhccc
Q 000837 1211 QAMQQSGYSPDFSTHWSLISNLRNSN 1236 (1262)
Q Consensus 1211 ~~~~~~~~~p~~~~~~~~l~~l~~~~ 1236 (1262)
++.++ .+|+...+...+..++.+.
T Consensus 450 ~eale--~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHHHHHh
Confidence 99999 6899999999999999863
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-08 Score=121.67 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHh---------cCchhHHHHHHHHHHHc
Q 000837 213 SNEIFSNLIQGYVG-----VGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVK---------MKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 213 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~---------~~~~~~A~~~~~~m~~~ 278 (1262)
+.+.|...+++-.. .+.+++|+..|++..+..+. +...|..+..++.. .+++++|...++++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555544444211 24568999999999988655 56677777665542 24589999999999998
Q ss_pred CCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcc-c
Q 000837 279 GNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVL-A 356 (1262)
Q Consensus 279 g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~ 356 (1262)
++. +..++..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|+..+++. ...|+.. .
T Consensus 334 dP~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 334 DHN----NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 864 67788888889999999999999999999886 556788888999999999999999999998 5556543 3
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 000837 357 GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPD-VHTYNSLISGMF 435 (1262)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~ 435 (1262)
+..++..+...|++++|...+++......+-+...+..+...+...|++++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44555567778999999999999886542224455777888888999999999999987666 333 444555666777
Q ss_pred hcCChHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 000837 436 KEGMSKHAKEILDEMVNR-GITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLI 491 (1262)
Q Consensus 436 ~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 491 (1262)
..| ++|...++.+.+. +..|....+..++ |.-.|+-+.+..+ +++.+.+..
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccchH
Confidence 777 4777777776663 2223333333333 4446666767666 888777653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-06 Score=93.80 Aligned_cols=458 Identities=15% Similarity=0.109 Sum_probs=218.1
Q ss_pred HHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcC
Q 000837 707 VECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLC--KEK 784 (1262)
Q Consensus 707 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~--~~~ 784 (1262)
++.+...|++++|.+...+++...|+. ..++..-+.++.+.+.+++|+.+.+.-... ..+...+ +=.+|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd-~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDD-EDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCc-HhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHcc
Confidence 455667888999999999988887763 344445555677777777777554431110 0111111 234444 567
Q ss_pred CHHHHHHHHHHHhhCCCCCC-hhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCC-chHHhHHHHHHHHhhcCCHHHHHHH
Q 000837 785 KFSVAFKMLDSMLDKNMAPC-LDVSVSLIPQLFRTGRLEKAVALREISLKEQPL-LLFSFHSAFISGFCVTGKAEEASKL 862 (1262)
Q Consensus 785 ~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 862 (1262)
..++|+..++ |..+. ..+...-...+.+.|++++|..+|+.+.+.+.. .+...-..++.+ + .+..
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~---a~l~- 160 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----A---AALQ- 160 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----H---Hhhh-
Confidence 7777777766 22222 235555566677777777777777777655332 111111111111 0 0001
Q ss_pred HHHHHHCCCCCCHHhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 000837 863 FRDMLSQGMLLEDEVYNMLIQ---GHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQ 939 (1262)
Q Consensus 863 ~~~m~~~g~~pd~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 939 (1262)
-+.+......| ..+|..+.+ .+...|++.+|++++....+.+.. .++ .++.. -..+-+++
T Consensus 161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~el--- 223 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEEL--- 223 (652)
T ss_pred HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHHH---
Confidence 11122222222 223333332 334567777777777766433210 000 00000 00000000
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH----HHHHHHhhcCCChh--HHHHHHHHHHHCC---
Q 000837 940 NKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTY----NFLIYGFSKHKDVS--SSKYYIAAMVSKG--- 1010 (1262)
Q Consensus 940 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~----~~li~~~~~~g~~~--~A~~~~~~m~~~g--- 1010 (1262)
...-..|...+...|+.++|..++...+.... +|.... |.|+.. ....++- .++..++......
T Consensus 224 -----~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 224 -----NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred -----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHH
Confidence 00112334445556666666666666655532 233221 112111 1111111 1111111111100
Q ss_pred ----C---CCChhcH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC
Q 000837 1011 ----F---NPSNRSL-RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR-GKLQEAEHFLDQIVDKDL 1081 (1262)
Q Consensus 1011 ----~---~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 1081 (1262)
+ .-..... +.++..| .+..+.+.++...+.. ..|....-..+..+.... ..+..|.+++...-+...
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 0 0000111 1122222 3344445554444332 233333333333332222 246677777777665422
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHC--C---
Q 000837 1082 VPDTINYDNLIKRFCGYGRLDKAVDLLN--------IMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMAR--D--- 1147 (1262)
Q Consensus 1082 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~--~--- 1147 (1262)
.-...+.-.++......|+++.|++++. .+.+.+..|..+.+...+.. .++.+-|.+++.+.++- .
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 2123445555566677888888888887 55555666776665554444 44444455554444430 0
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1212 (1262)
..+ -..++..++..=.+.|+-++|..+++++.+.. ++|..+...++.+|+.. |.++|..+-+.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 111 12334444444556688888888888888752 66777777777777765 55777766553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-06 Score=96.39 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCC--Cch--
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLD--------SMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQP--LLL-- 839 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~-- 839 (1262)
....++......|+++.|++++. .+.+.+..| .+...+...+.+.++-+.|..+++....... .+.
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 33444555556677777777766 444444444 4555666677777777777777766543210 011
Q ss_pred --HHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 840 --FSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLS 899 (1262)
Q Consensus 840 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~ 899 (1262)
...+..+...-.+.|+.++|..+++++.+.+. +|..+...++.+|+.. +++.|..+-.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 12233333444566888888888888887443 4777777777777654 4555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-08 Score=106.91 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
+..+..++..+...|++++|...+.++.+.. |.+...+..+...|...|++++|...|++..+.++. +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4455555555555555555555555555443 334455555555555555555555555555544322 3334444444
Q ss_pred HHHhcCchhHHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~ 277 (1262)
.+...|++++|...|++.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHcccHHHHHHHHHHHHh
Confidence 44455555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-08 Score=105.65 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
..+..+...|...|++++|...|++..+..+. +...+..+...+...|++++|...|++.++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444555555555555555555554443221 2344444444444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-09 Score=105.35 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=137.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHH-HHHHHHHh
Q 000837 949 NILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLR-SVISCLCE 1027 (1262)
Q Consensus 949 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~ 1027 (1262)
+.|...|.+.|.+.+|.+.|+..++. .|-..||..|-.+|.+..++..|+.++.+-++. .|-.++|. .+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45667777777777777777766664 345556666667777777777777777766663 44444443 35556666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
.++.++|.++++...+.. +.+......+...|.-.++++.|+.++.++++.|+. +...|+.+..+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 667777777777666541 233445555555666666666666666666666655 555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 1108 LNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQ 1187 (1262)
Q Consensus 1108 ~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~ 1187 (1262)
|.+.+.---.|+. ..++|..++....-.||+.-|.+-|.-.+..+ ..+.
T Consensus 381 f~RAlstat~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ 429 (478)
T KOG1129|consen 381 FQRALSTATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHG 429 (478)
T ss_pred HHHHHhhccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccC-cchH
Confidence 6665543212221 23455555555555566666655555555431 3335
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..++.|+-.-.+.|+.++|..++..+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555555555555666666665555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-06 Score=97.46 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 000837 878 YNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMS 957 (1262)
Q Consensus 878 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 957 (1262)
+..+.+.|...|++++|++..+..++..+. .+..|..-...+-+.|++.+|.+.++...+.+.. |-..-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 344445555555555555555555554211 2344445555555555555555555555544221 33333444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh--------hHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000837 958 SGNIFHVKRVLDELQENELLPDEV--------TYNFLIYGFSKHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 958 ~g~~~~A~~~~~~m~~~g~~pd~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~ 1008 (1262)
.|+.++|.+++....+.+..|-.. -..-...+|.+.|++..|+..|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566666655555554443322111 112334456666666666666555554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-06 Score=99.85 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=182.5
Q ss_pred HHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhc-----C
Q 000837 745 LCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRT-----G 819 (1262)
Q Consensus 745 ~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 819 (1262)
+...|.+++|++.++.-... +.............+.+.|+.++|...+..++++++ .+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 34444444444444432221 222345556667888889999999999999988763 3444444455554222 2
Q ss_pred CHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCH-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 000837 820 RLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKA-EEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELL 898 (1262)
Q Consensus 820 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~ 898 (1262)
+.+...++++.+....|..+..-.-.| .+.....+ ..+...+..+..+|+++ +|+.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 567778888888776554333222221 12222223 24556667777888753 5666666666555666666666
Q ss_pred HHHHHC----C----------CccCh--hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHH
Q 000837 899 SAMIRK----R----------LSLSI--SSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIF 962 (1262)
Q Consensus 899 ~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 962 (1262)
..+... + -.|+. .++..+...|-..|++++|+..++..++..+. .+..|..-...|-..|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 665543 1 12333 24455677777888888888888888876322 3556777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhc------H--HHHHHHHHhcCChhHH
Q 000837 963 HVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRS------L--RSVISCLCEVGELGKS 1034 (1262)
Q Consensus 963 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~--~~li~~~~~~g~~~~A 1034 (1262)
+|.+.++.....+. -|...-+-.+..+.+.|++++|.+++....+.+..|-... | .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888877643 3666667777788888888888888888877654332211 1 2345578888888888
Q ss_pred HHHHHHHHH
Q 000837 1035 LELSQEMRL 1043 (1262)
Q Consensus 1035 ~~~~~~~~~ 1043 (1262)
++.|..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 887776665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-06 Score=89.20 Aligned_cols=289 Identities=10% Similarity=0.048 Sum_probs=203.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHH
Q 000837 885 HCEANNLRKVRELLSAMIRK-RLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFH 963 (1262)
Q Consensus 885 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 963 (1262)
.+..++-..+...+-.+... .+..+......+.+.+...|+.++|+..|+.....++. +...-....-.+.+.|+.++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhh
Confidence 34455555555555444333 35567778888999999999999999999988765221 22222233344677889988
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 000837 964 VKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMR 1042 (1262)
Q Consensus 964 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 1042 (1262)
...+-..+.... .-....|-.-........+++.|+.+-++.++. .| +...|-.-...+...|+.++|.-.|+..+
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877776642 122333444444455677889999999888873 33 33344444557888999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH-HHHH-hcCChHHHHHHHHHHHhC--CCCC
Q 000837 1043 LKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLI-KRFC-GYGRLDKAVDLLNIMLKK--GSTP 1118 (1262)
Q Consensus 1043 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~--~~~p 1118 (1262)
.. -+-+...|..|+..|...|++.+|..+-+..... +..+..+...+. ..+. ..-.-++|.+++++-++. ++.|
T Consensus 362 ~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 362 ML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred hc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 75 2335889999999999999999999888877653 233455555442 3332 233458899999888774 2233
Q ss_pred CHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1119 NSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1119 ~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+.-...+....|+.+++++++++.+. ..||....+.|+..+...+.+++|+..|..++..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333334444448999999999999987 7789999999999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-07 Score=104.83 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=162.4
Q ss_pred CChhHHHHHHHHHHHC-CCCCC--hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 000837 994 KDVSSSKYYIAAMVSK-GFNPS--NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAE 1070 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~-g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 1070 (1262)
+..+.++.-+.+++.. ...|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777753 12222 2346666777888888889988888888752 234788899999999999999999
Q ss_pred HHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHcccCChhHHHHHHHHHHHC
Q 000837 1071 HFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS---YDSIISTCNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1071 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~g~~~~A~~~~~~~~~~ 1146 (1262)
..|+++++ +.|+ ..+|..+..++...|++++|++.+++.++. .|+... +..+....++.++|.+.+++....
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999987 4565 678888888888899999999999998885 344321 222222277889999999776542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 000837 1147 DLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLG-----DT-PTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSP 1220 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~-----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 1220 (1262)
..|+ .|. ........|+..++ +.++.+.+.. .. .....|..++..+.+.|++++|+..|+++++.+ .|
T Consensus 195 -~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 -LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred -CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2333 232 23344456666554 3455554310 11 135688999999999999999999999999842 45
Q ss_pred ChhhHHHHHHHhhccccc
Q 000837 1221 DFSTHWSLISNLRNSNDK 1238 (1262)
Q Consensus 1221 ~~~~~~~~l~~l~~~~~~ 1238 (1262)
++..+...+.++....+.
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777787777777775544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-08 Score=100.73 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=159.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 000837 877 VYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLM 956 (1262)
Q Consensus 877 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 956 (1262)
--+.+..+|.+.|.+.+|...++..+++ .|-+.+|-.|-+.|.+..+...|+.+|.+-.+. ++.++....-+.+.+-
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 3455666777777777777777766665 344556666677777777777777777666654 2224444445566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLE 1036 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 1036 (1262)
..++.++|.++++...+.. ..+.....++..+|...++++.|+.+|+++++.|+ .+...|..+.-||.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7777788888887777642 22344445555667777888888888888888775 355667777777777788888888
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1037 LSQEMRLKGLVHD--SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1037 ~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
-|+.....--.|+ ..+|..|.......||+..|...|+-.+..+.. +...+|.|.-.-.+.|+.++|..+++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8887776544444 567777777777888888888888877764322 3677888877777888888888888776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-08 Score=110.28 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC-----CCc-cCh-hhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCc
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGR-----GLV-PFL-SCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEK 287 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~-~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 287 (1262)
.++..|...|..+|++++|...|.+..+. |.. |.+ ...+.+...|...+++++|..+|++++..-..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~------ 273 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE------ 273 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------
Confidence 44555667777777777777777665443 111 111 22333445555555555555555555442211
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---------CCCCCccc-H
Q 000837 288 DSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM---------KCTPDVLA-G 357 (1262)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~~-~ 357 (1262)
......+--..+++.|...|++.|++++|...+++. ...|++.+ +
T Consensus 274 -------------------------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 274 -------------------------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 000011111234555555666666666666555554 12233322 4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHC---CCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCC-
Q 000837 358 NRIIHTLCSIFGSKRADLFVQELEHS---GFRPD----EITFGILIGWTCREGNLRSALVFFSEILSR----GL--NPD- 423 (1262)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p~- 423 (1262)
+.++..++..+++++|..+++...+. -+.++ ..+|+.|...|...|++++|.++|.+.+.. +. .+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 56666777778888888777654432 12333 347899999999999999999999987633 12 222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 000837 424 VHTYNSLISGMFKEGMSKHAKEILDEMVNR----GI-TPS-LSTYRILLAGYCKARQFDEAKIMVSEMAKS 488 (1262)
Q Consensus 424 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 488 (1262)
...++-|...|.+.+++++|.++|.+...- |. -|+ ..+|.-|...|.+.|++++|.++.+.....
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456778888899999999999999876542 32 123 468888999999999999999999887743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-07 Score=106.35 Aligned_cols=204 Identities=17% Similarity=0.200 Sum_probs=116.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHC-----CC-CCC-hhcHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HH
Q 000837 986 LIYGFSKHKDVSSSKYYIAAMVSK-----GF-NPS-NRSLRSVISCLCEVGELGKSLELSQEMRL-----KGLV-HD-SI 1051 (1262)
Q Consensus 986 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~-~~-~~ 1051 (1262)
+...|...+++++|..+|++++.. |- .|. ..+++.|..+|.+.|++++|..+++...+ .|.. |. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555566666655555531 10 111 12334444455556665555555554433 1111 11 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDK---DLVPD----TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
.++.++..+...+++++|..+++...+. -..++ ..+++.|...|...|++++|.+++++.++..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~--------- 397 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL--------- 397 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---------
Confidence 3444555566666666666666554431 01111 2356666666666666666666666555420
Q ss_pred HHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHH
Q 000837 1125 SIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LGD-TP-TQEMYSSVVNRY 1197 (1262)
Q Consensus 1125 ~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~~-~p-~~~~~~~l~~~~ 1197 (1262)
++.. .+..+ ....++.++..|.+.+++++|.++|.+... .|. .| ...+|..|+..|
T Consensus 398 ----------------~~~~-~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 398 ----------------RELL-GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred ----------------Hhcc-cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 0000 01122 235678999999999999999999887764 221 22 368888999999
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 000837 1198 SLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1198 ~~~g~~~~A~~~~~~~~~ 1215 (1262)
...|++++|.++.+++..
T Consensus 461 ~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 999999999999998774
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-08 Score=93.58 Aligned_cols=196 Identities=17% Similarity=0.181 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS----SSYDSI 1126 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 1126 (1262)
+...|.-.|...|+...|..-++++++. .|+ ..+|..+...|.+.|+.+.|.+.|++.++. .|+. ..|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3444556667777777777777777763 343 556666667777777777777777776664 2321 136666
Q ss_pred HcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 000837 1127 ISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1127 l~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1205 (1262)
++..|++++|...|++....-.-| -+.+|.+++.+..+.|+.+.|+..|++.++.. +-.+.....+.+.....|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 666667777777777776421111 35688888888889999999999999988852 3346677788888889999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhhccccccccccchhhhhhhhc
Q 000837 1206 ASELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253 (1262)
Q Consensus 1206 A~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1253 (1262)
|...+++.+..+. +..+..|..|.--...++.+.+...+.-|.+.-+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999998888754 7777777777777777766666555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-06 Score=86.51 Aligned_cols=313 Identities=17% Similarity=0.115 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH-HHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR-VFINHL 259 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~l 259 (1262)
+...+..|.+..+|.+|++++....+.. |.+....+.|...|....++.+|-++|+++-..-++ ..-|. .-..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 5666777778888888888887776665 445566777888888888888888888877665332 22222 123455
Q ss_pred HhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC
Q 000837 260 VKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNE--VAYGYCEKKD 337 (1262)
Q Consensus 260 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~ 337 (1262)
.+.+.+..|+++...|... +....-.. -.......++
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----------------------------------------~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----------------------------------------PALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----------------------------------------HHHHHHHHHHHHHHhccccc
Confidence 5666666666665555221 11110000 0112245677
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS-GFRPDEITFGILIGWTCREGNLRSALVFFSEIL 416 (1262)
Q Consensus 338 ~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 416 (1262)
+..+..+.+......+..+.+...-...+.|++++|++-|++..+- |..| -..|+..+..| +.|+++.|+++..+++
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEII 205 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 7777777777744455566666666677889999999999887765 6555 46777655544 7789999999999999
Q ss_pred hCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 000837 417 SRGLNPDVH----TYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIE 492 (1262)
Q Consensus 417 ~~g~~p~~~----~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 492 (1262)
++|++.... .-+-.|++ ..+..-.. |...+ =+..+|.-...+.+.|+++.|.+-+..|.-+.-.+
T Consensus 206 eRG~r~HPElgIGm~tegiDv----rsvgNt~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e 274 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDV----RSVGNTLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE 274 (459)
T ss_pred HhhhhcCCccCccceeccCch----hcccchHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence 888652211 01111110 00000000 00000 01223333344556677777777766665333211
Q ss_pred cCccchhhhhHHHhcCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHH
Q 000837 493 LSSLEDPLSKGFMILGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVH 570 (1262)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~ 570 (1262)
.|+.|..++.-. -..+++.+..+.+.-.+...|-|. |..++-.||
T Consensus 275 --------------------------------lDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 275 --------------------------------LDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred --------------------------------CCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 233333322111 123344444455555555555555 667777777
Q ss_pred hcCCHHHHHHHHHH
Q 000837 571 ARGNLKAALLLVDE 584 (1262)
Q Consensus 571 ~~g~~~~A~~~~~~ 584 (1262)
++.-++-|-+++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 77777777776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-07 Score=102.43 Aligned_cols=222 Identities=10% Similarity=-0.052 Sum_probs=146.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCch
Q 000837 188 LIRVGMLKEVELLLLAMEREGI-LL-KSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVT 265 (1262)
Q Consensus 188 l~~~~~~~~a~~~l~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~ 265 (1262)
+...+..+.+..-+.+++.... .+ ..+..|..++..|...|+.++|+..|++..+..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 3334455666666767765321 11 22456778888888889999999999888887654 678888888888899999
Q ss_pred hHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000837 266 HLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFF 345 (1262)
Q Consensus 266 ~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 345 (1262)
+.|...|++.++..+. +..+|..+..++...|++++|.+.+++..+.. +.+.. .......+...++.++|...|
T Consensus 115 ~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 115 DAAYEAFDSVLELDPT----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHH
Confidence 9999999888887643 45677777788888888888888888888764 22331 112222234556788888888
Q ss_pred HHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHC---CC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000837 346 TEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHS---GF---RPDEITFGILIGWTCREGNLRSALVFFSEILS 417 (1262)
Q Consensus 346 ~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 417 (1262)
.+. ...|+...+ .......|+..++ +.+..+.+. .+ +....+|..+...+.+.|++++|...|++..+
T Consensus 189 ~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 189 KQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 333333322 2223335555444 344444421 11 11234677788888888888888888888876
Q ss_pred CCC
Q 000837 418 RGL 420 (1262)
Q Consensus 418 ~g~ 420 (1262)
..+
T Consensus 265 ~~~ 267 (296)
T PRK11189 265 NNV 267 (296)
T ss_pred hCC
Confidence 653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-05 Score=79.75 Aligned_cols=305 Identities=11% Similarity=0.064 Sum_probs=135.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC
Q 000837 811 LIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNM-LIQGHCEAN 889 (1262)
Q Consensus 811 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~g 889 (1262)
+...+...|++.+|+.-|+...+.+|. +-.++-.-...|...|+..-|+.-+.+.++ .+||-..-.. -...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 334444455555555555555443222 111111222345555555555555555555 4455432211 112344566
Q ss_pred CHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 000837 890 NLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLD 969 (1262)
Q Consensus 890 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 969 (1262)
.+++|..-|+.+++....... ...++.+.-..++-. .....+..+...|+...|++...
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHH
Confidence 666666666666554321110 011111111111111 11122333445566666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 000837 970 ELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD 1049 (1262)
Q Consensus 970 ~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 1049 (1262)
.+++. ...|...|..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++.++ +.||
T Consensus 180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 66654 23355555555566666666666666555555532 22333344444455566666666666666655 3344
Q ss_pred HHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1050 SIVQNAI-------------AEGLLSRGKLQEAEHFLDQIVDKDLVPDTIN---YDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1050 ~~~~~~l-------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
....... +......+++.++++..+..++....-..+. +..+-.++...+++.+|++...+.++
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 2211110 1112234455555555555554322211112 22223344455555566655555554
Q ss_pred CCCCCC-HHHHHHHHcc---cCChhHHHHHHHHHHH
Q 000837 1114 KGSTPN-SSSYDSIIST---CNKLDPAMDLHAEMMA 1145 (1262)
Q Consensus 1114 ~~~~p~-~~~~~~ll~~---~g~~~~A~~~~~~~~~ 1145 (1262)
. .|+ +.++.--..+ ...+++|+.-|++..+
T Consensus 336 ~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 336 I--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred c--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2 333 2222221111 3445555555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=82.68 Aligned_cols=340 Identities=11% Similarity=0.069 Sum_probs=211.4
Q ss_pred hHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHH-HH
Q 000837 839 LFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLED-EVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYR-NL 916 (1262)
Q Consensus 839 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 916 (1262)
++.-..-+.+.+...|++.+|+..|....+- .|+. .++-.-...|...|+-.-|+.-+...++. +||-..-+ .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3334445677788889999999999998872 2332 23333344677778888888888887775 45543222 23
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCCh
Q 000837 917 VRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDV 996 (1262)
Q Consensus 917 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 996 (1262)
...+.+.|.++.|..-|+.+++..++.+. ..+|.+-+....+ .......+..+.-.||.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~---------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL---------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch---------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCch
Confidence 45677889999999888888876433211 1111111111111 11223334455678999
Q ss_pred hHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 997 SSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQI 1076 (1262)
Q Consensus 997 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 1076 (1262)
..|+.....+++.. ..|...|..-..||...|.+..|+.-++...+.. ..+.....-+-..+...|+.+.++....+-
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999842 3366667777889999999999998888776642 334666667778888899999999999988
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCC-----
Q 000837 1077 VDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPS----- 1151 (1262)
Q Consensus 1077 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~----- 1151 (1262)
++ +.||...... .|-+.....+.++-.++.++ .++|-++++..++.++ ..|.
T Consensus 250 LK--ldpdHK~Cf~---~YKklkKv~K~les~e~~ie----------------~~~~t~cle~ge~vlk--~ep~~~~ir 306 (504)
T KOG0624|consen 250 LK--LDPDHKLCFP---FYKKLKKVVKSLESAEQAIE----------------EKHWTECLEAGEKVLK--NEPEETMIR 306 (504)
T ss_pred Hc--cCcchhhHHH---HHHHHHHHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHh--cCCccccee
Confidence 87 5677432211 12222222222222222222 2455566666666665 2332
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
...+..+..++...|++.+|++...++++. .+.|..++.--..+|.....++.|+.-|+++++ ..|++...-.-+..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRAREGLER 383 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHHHHHHHH
Confidence 234455666666677777777777777763 133366777777777777777777777777777 56665554444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-06 Score=86.07 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHH
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVV 294 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~ 294 (1262)
.+...|.-.|.+.|++..|..-+++..+.++. +..+|..+...|-+.|+.+.|.+.|++.+...+. +....|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----NGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----ccchhhhhh
Confidence 45567888999999999999999999998765 7788999999999999999999999999888764 677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChh
Q 000837 295 RLLCRDRKIQESRNLVRKAMAFG-LEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSK 371 (1262)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~ 371 (1262)
..+|..|++++|.+.|++....- +..-..+|.-+.-+..+.|+.+.|.+.|++. ...| ...+.-.+.....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 88888888888888888877632 2223456666666666778888888888777 3333 3455666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR 418 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 418 (1262)
.|..+++.....+. ++..+.--.|..--..|+.+.|-++=.++.+.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777776653 66666666666666677777777665555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.8e-06 Score=93.23 Aligned_cols=309 Identities=8% Similarity=-0.031 Sum_probs=195.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGI-LLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
.+.+|..++..+...++.+.+..-+....+... ..+..+........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 467788888888888888887666666554432 2223344445556678899999999999998887544 4444442
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMGNNLTDLE-KDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCE 334 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 334 (1262)
...+...+....+.....+.+..... ..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 22333333333333333333332211 1133 3344556677889999999999999999876 6667888899999999
Q ss_pred cCCHHHHHHHHHHc-CCC---CCcc--cHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHhcCC
Q 000837 335 KKDFEDLLSFFTEM-KCT---PDVL--AGNRIIHTLCSIFGSKRADLFVQELEHSGF-RPDEITF-G--ILIGWTCREGN 404 (1262)
Q Consensus 335 ~g~~~~A~~~~~~~-~~~---p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~ 404 (1262)
.|++++|+..+++. ... |+.. .|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999988 322 2322 355788889999999999999999864432 1222211 2 23333444555
Q ss_pred HHHHHHH--HHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCcc---CH---HHHHHHH--HHHHHc
Q 000837 405 LRSALVF--FSEILSRGLNPDVHTY--NSLISGMFKEGMSKHAKEILDEMVNRGITP---SL---STYRILL--AGYCKA 472 (1262)
Q Consensus 405 ~~~A~~~--~~~m~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~---~~~~~li--~~~~~~ 472 (1262)
.+.+.++ +..............+ .....++...|+.++|..+++.+......+ .. .+-..++ -++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 5555544 2222111111111222 245667788999999999999987743220 11 1112223 345678
Q ss_pred CCHHHHHHHHHHHHHcC
Q 000837 473 RQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 473 g~~~~A~~l~~~m~~~~ 489 (1262)
|+.++|.+++.+.....
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-06 Score=90.21 Aligned_cols=232 Identities=11% Similarity=0.052 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccCccchhhhhHHHh
Q 000837 427 YNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAKSGLIELSSLEDPLSKGFMI 506 (1262)
Q Consensus 427 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~~~~~~~ 506 (1262)
+.-+.+...+..+++.|.+-++...+.. .+..-++....+|...|.+.++........+.|..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre--------------- 289 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE--------------- 289 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---------------
Confidence 4556666667777788887777777654 34455556667788888888887777776666542
Q ss_pred cCCChhhhhhccccccCCCchhhHHhhhhhhccCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 507 LGLNPSAVRLRRDNDMGFSKVEFFDNLGNGLYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMV 586 (1262)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 586 (1262)
...-|+.+... +..+..+|.+.++++.|+..|.+.+
T Consensus 290 -------------------~rad~klIak~-------------------------~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 290 -------------------LRADYKLIAKA-------------------------LARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred -------------------HHHHHHHHHHH-------------------------HHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 11122221111 1123446667777888888887765
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHh
Q 000837 587 RWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENE 666 (1262)
Q Consensus 587 ~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 666 (1262)
..-..|+...-. ...+++.+..+...-.++..-...... ...+.+.|++..|+..+.+++...+. |..
T Consensus 326 te~Rt~~~ls~l----------k~~Ek~~k~~e~~a~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~P~-Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLSKL----------KEAEKALKEAERKAYINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRDPE-DAR 393 (539)
T ss_pred hhhcCHHHHHHH----------HHHHHHHHHHHHHHhhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcCCc-hhH
Confidence 533333322111 113333333333322222221112222 45677889999999999999888765 888
Q ss_pred hHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCC
Q 000837 667 SYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732 (1262)
Q Consensus 667 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 732 (1262)
.|....-+|.+.|.+..|++-.+..++.. ++....|..-..++....+++.|.+.|...++.+|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 89999999999999998888777766653 123334444445555566777777777777665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-06 Score=84.30 Aligned_cols=285 Identities=12% Similarity=0.019 Sum_probs=151.3
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV-FSALVKGLCA 606 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~ 606 (1262)
.+.++..|+...++..|...+++.....|... .---...+.+.+.+..|+.+...|... |+... ...|-.+..-
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 33444444444444444444444443333333 112344556667777777777666432 22211 1112222223
Q ss_pred CCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhc-CCCCCHhhHHHHHHHHHhcCCHhhHH
Q 000837 607 SRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQR-GLTIENESYTTLLMSLCKKGFIKDLH 685 (1262)
Q Consensus 607 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 685 (1262)
+.+++..+..+.++.... -+..+.+.......+.|+++.|++-|+...+- |.. ....|+..+ +..+.|+++.|+
T Consensus 124 se~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHH
Confidence 334477777777776532 25556666666677899999999999998776 444 556676554 455778999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHHhc-
Q 000837 686 AFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQ- 764 (1262)
Q Consensus 686 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~- 764 (1262)
+...+++++|++..++.-..+..--.....+...+.+....+ ..++..-.....+.|+++.|.+.+.+|-..
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 999999998865332211000000000000111111111111 112222223344566666666666665432
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHH
Q 000837 765 GCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREIS 831 (1262)
Q Consensus 765 g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 831 (1262)
....|+++...+.-.- ..+++.+..+-+.-+.+.+.. ...|+..++-.||+..-++.|-.++.+-
T Consensus 272 E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2345666655443221 234444445555555555443 3577888888888888888887776653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0014 Score=76.97 Aligned_cols=161 Identities=12% Similarity=0.040 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHc
Q 000837 1052 VQNAIAEGLLSRGKL---QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS 1128 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 1128 (1262)
+-+.|++.+.+.++. -+|+-+++..+... +-|..+--.|+..|+..|-...|.++|+.|--+.+.-|...|..+-.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 446777778777764 34555555555431 12445556677888888888888888888877777777776666555
Q ss_pred c--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1129 T--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLI---SMVQLGDTPTQEMYSSVVNRYSLENNL 1203 (1262)
Q Consensus 1129 ~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~ 1203 (1262)
. .|++..+...+....+.=-.--.++-..+ ..-++.|.+....+... ++...-..-...+-+......+..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI-~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYI-ALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHH-HHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 5 67776666666655541000011222222 23345566665544432 221100011122223455556666777
Q ss_pred hHHHHHHHHHH
Q 000837 1204 GKASELMQAMQ 1214 (1262)
Q Consensus 1204 ~~A~~~~~~~~ 1214 (1262)
++-...++.|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 66666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-05 Score=90.06 Aligned_cols=273 Identities=9% Similarity=-0.081 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-cCh-hhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-PFL-SCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKD 288 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 288 (1262)
|+.+..+..+...|...|+.+++...+....+.... ++. .........+...|+++.|...+++.++..+. +..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~ 78 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR----DLL 78 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHH
Confidence 556677888888888899999988888876654321 222 22223344567789999999999999987643 333
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHH
Q 000837 289 SFHDVVRLLC----RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIH 362 (1262)
Q Consensus 289 ~~~~l~~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~ 362 (1262)
.+.. ...+. ..+....+.+.+.. .....+.+......+...+...|++++|...+++. ..+.+...+..+..
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3332 21222 24555666665554 11222334455566778889999999999999999 33445677889999
Q ss_pred HHHhhCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHH
Q 000837 363 TLCSIFGSKRADLFVQELEHSGF-RPDE--ITFGILIGWTCREGNLRSALVFFSEILSRGL-NPDVHTY-N--SLISGMF 435 (1262)
Q Consensus 363 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y-~--~li~~~~ 435 (1262)
++...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999999998876532 2332 3455788889999999999999999865433 1222211 1 3344444
Q ss_pred hcCChHHHHHH--HHHHHhCCCc--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 000837 436 KEGMSKHAKEI--LDEMVNRGIT--PSLSTYRILLAGYCKARQFDEAKIMVSEMAKSG 489 (1262)
Q Consensus 436 ~~g~~~~A~~l--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 489 (1262)
..|....+.++ +......... ...........++...|+.++|..+++.+....
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55544444443 2222111111 111222345667788899999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00073 Score=79.26 Aligned_cols=521 Identities=11% Similarity=0.051 Sum_probs=288.8
Q ss_pred hccCCCHHHHHHHHHHHhhcCCCCChHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHH
Q 000837 537 LYLDTDLDEYERKLSKIIEDSMIPNFNSLIKMV--HARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKAC 614 (1262)
Q Consensus 537 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a 614 (1262)
....+++..|.+.+.+++++.|...|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|-..+. .++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~-~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK-LDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh-hhHH
Confidence 345678889999999999998887777777765 5689999999999888765554 78888888888888888 9999
Q ss_pred HHHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC----------HhhH
Q 000837 615 TGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGF----------IKDL 684 (1262)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A 684 (1262)
..++++.....+ +......+..+|.+.+.+.+-.+.--++-.. ++-+.+.+.++++...+.-. ..-|
T Consensus 97 ~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999887644 4777777888888888776644443333332 23366777777776654211 2235
Q ss_pred HHHHHHHHhcC-CCCCcccHHHHHHHHhhhCchHhHHHHH-HHHHhhcCCCChhHHHHHHHHHHhcCCcccHHHHHHHHH
Q 000837 685 HAFWDIAQNRK-WLPGLEDCKSLVECLCHKKLLKESLQLF-ECMLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELL 762 (1262)
Q Consensus 685 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~ 762 (1262)
...++.+.+.+ -.-+..-.......+...|++++|.+++ ....+..+..+...-...+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666654 1111111222233455678888888888 334444455455555566667777788888888887777
Q ss_pred hcCCCCChhhHHHHHHHHHh----------------cCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHH
Q 000837 763 QQGCNLDQMAYSHLIRGLCK----------------EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVA 826 (1262)
Q Consensus 763 ~~g~~~d~~~~~~li~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 826 (1262)
..|... |...++.+.+ .+..+...+..............-..-.+...+..-|+.+++.-
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 775332 3332222111 11222222222222211111001111112222234466666543
Q ss_pred HH-HHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHHhcCC-----HHH
Q 000837 827 LR-EISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDE-------VYNMLIQGHCEANN-----LRK 893 (1262)
Q Consensus 827 ~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~~~~~~g~-----~~~ 893 (1262)
.| ++.-.. + .|..=+..|...=..+.-..++...... .++.. .+...+..-...|. -+.
T Consensus 330 ~y~~kfg~k-p-----cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFKKFGDK-P-----CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHHHhCCC-c-----HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 33 222211 1 1111122222222222222333332221 11111 01111111112221 122
Q ss_pred HHHHHHHHH---HCC------CccChh---------hHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCCCcchHHHHH
Q 000837 894 VRELLSAMI---RKR------LSLSIS---------SYRNLVRWMCMEGGVPW---ALNLKELMLGQNKSHNLIIFNILV 952 (1262)
Q Consensus 894 a~~~~~~~~---~~~------~~~~~~---------~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li 952 (1262)
...++.+.. ++| +.|+.. +.+.|++.+.+.++... |+-+++...... +.|..+=-.+|
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 233332221 222 223332 34567788888877664 555555554432 22445555778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChh
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELG 1032 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 1032 (1262)
+.|.-.|-+..|.++|+.+.-+.+..|...|..+ .-+...|++..+...++...+- +..+..--.-+|..-.+.|.+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~yS 558 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYS 558 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchh
Confidence 8999999999999999999888787776666443 4455677888888888776652 0111111112333334556665
Q ss_pred HHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1033 KSLELSQ---EMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1033 ~A~~~~~---~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
+..++.. .+...-......+-+..++.++..++.++-...+..|.
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 5554432 22222112224455777888888899888888888776
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-05 Score=96.99 Aligned_cols=262 Identities=15% Similarity=0.064 Sum_probs=124.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHhhcCCChhHHHHHHHHHHHC--CC-CC--ChhcHHHHHHHH
Q 000837 955 LMSSGNIFHVKRVLDELQENELLPDE----VTYNFLIYGFSKHKDVSSSKYYIAAMVSK--GF-NP--SNRSLRSVISCL 1025 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p--~~~~~~~li~~~ 1025 (1262)
+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... .. .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 44556666666666555442111111 12333444455566666666666665531 00 01 112223344455
Q ss_pred HhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHhHHHHHHHH
Q 000837 1026 CEVGELGKSLELSQEMRLK----GLV--H-DSIVQNAIAEGLLSRGKLQEAEHFLDQIVDK--DLVP--DTINYDNLIKR 1094 (1262)
Q Consensus 1026 ~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~ 1094 (1262)
...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 5666666666666654431 111 1 1223344455555666666666666665432 1111 12334444555
Q ss_pred HHhcCChHHHHHHHHHHHhCC-CCCCHHHH-------HHHHcc-cCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 000837 1095 FCGYGRLDKAVDLLNIMLKKG-STPNSSSY-------DSIIST-CNKLDPAMDLHAEMMARDLKPS---MNTWHVLVHKL 1162 (1262)
Q Consensus 1095 ~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~-------~~ll~~-~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 1162 (1262)
+...|++++|.+.+....... .......+ ...... .|+.+.|...+........... ...+..++.++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 566666666666666654320 00000000 000011 5666666666555432110001 11134555666
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1163 CQEGRTTEAERLLISMVQL----GDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
...|++++|..+++++.+. |...+ ..+...++.++...|+.++|...+.++++.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677777777777666542 21111 234455666677777777777777766664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.9e-06 Score=90.27 Aligned_cols=227 Identities=15% Similarity=0.071 Sum_probs=143.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhc
Q 000837 183 VMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM 262 (1262)
Q Consensus 183 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~ 262 (1262)
..+..|.+.|.+.+|.-+|+..+++. |...++|..|+......++-..|+..+.+..+.++. +..+.-.|..+|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 45666778888888888888888877 667888888888888888888888888888888765 777888888888888
Q ss_pred CchhHHHHHHHHHHHcCCCCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcC
Q 000837 263 KVTHLAFRVCVDMVVMGNNLT-----DLEKDSFHDVVRLLCRDRKIQESRNLVRKA-MAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 263 ~~~~~A~~~~~~m~~~g~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
|.-..|+..++++++..++.. .++...-+. ..+.....+....++|-++ ...+..+|+.++..|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888888877664311 000000000 1111122233333333333 23443456666666666666666
Q ss_pred CHHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 000837 337 DFEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPD-EITFGILIGWTCREGNLRSALVFFS 413 (1262)
Q Consensus 337 ~~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~ 413 (1262)
+++.|...|+.. ..+| |...||.|...++...+.++|+.-+++..+. +|+ +.....|.-.|...|.+++|.+.|-
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 777777766666 3333 4556666666666666666666666666653 444 2222224445666666666666555
Q ss_pred HHH
Q 000837 414 EIL 416 (1262)
Q Consensus 414 ~m~ 416 (1262)
+.+
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=92.17 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=91.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHH----Hhc
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCL----CEV 1028 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~ 1028 (1262)
.++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..|. +...+..++ .-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence 3455567777776665432 23444555666777777777777777777663 2332 222233322 223
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh-HHHHHH
Q 000837 1029 GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL-DKAVDL 1107 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~ 1107 (1262)
+.+.+|..+|+++.+. +.+++.+.+.++.++...|++++|.+++++..+.+.. +..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3677888888887665 5567777788888888888888888888887764322 466666777777777777 556666
Q ss_pred HHHHHhC
Q 000837 1108 LNIMLKK 1114 (1262)
Q Consensus 1108 ~~~~~~~ 1114 (1262)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 6666653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.4e-08 Score=64.70 Aligned_cols=32 Identities=34% Similarity=0.731 Sum_probs=16.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 384 GFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 384 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
|+.||.+||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-08 Score=64.66 Aligned_cols=32 Identities=47% Similarity=0.822 Sum_probs=17.2
Q ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000837 454 GITPSLSTYRILLAGYCKARQFDEAKIMVSEM 485 (1262)
Q Consensus 454 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 485 (1262)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-06 Score=91.78 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCH
Q 000837 330 YGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCR----EGNL 405 (1262)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~ 405 (1262)
..+...|++++|++++.+. .+.......+..|++.++++.|.+.++.|.+.+ .|. +...+..++.. .+++
T Consensus 110 ~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 4555566677666666543 234444556667777777777777777776542 232 33333333322 2356
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 000837 406 RSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKARQF-DEAKIMVSE 484 (1262)
Q Consensus 406 ~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~ 484 (1262)
.+|..+|+++..+ +.++..+.+.+..++...|++++|.+++.+..+.+.. |..+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7777777776544 4556666777777777777777777777776654321 334444455555555665 455666666
Q ss_pred HHHcC
Q 000837 485 MAKSG 489 (1262)
Q Consensus 485 m~~~~ 489 (1262)
+....
T Consensus 262 L~~~~ 266 (290)
T PF04733_consen 262 LKQSN 266 (290)
T ss_dssp CHHHT
T ss_pred HHHhC
Confidence 66544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=88.95 Aligned_cols=247 Identities=11% Similarity=0.026 Sum_probs=157.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCH
Q 000837 813 PQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLL-EDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 813 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~ 891 (1262)
.-+.+.|++.+|.-.|+......|. +..+|..|.......++-..|+..+++.++ +.| +....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence 3456777788888888887777666 677788888888888888888888888877 444 345566666777777877
Q ss_pred HHHHHHHHHHHHCCCccC--------hhhHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCcchHHHHHHHHHhcCCHH
Q 000837 892 RKVRELLSAMIRKRLSLS--------ISSYRNLVRWMCMEGGVPWALNLKELMLG-QNKSHNLIIFNILVFHLMSSGNIF 962 (1262)
Q Consensus 892 ~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 962 (1262)
..|...++..+...++-- ...-.. ........+....++|-++.. .+..+|+.++..|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 888888887766532200 000000 000111112233344444333 333357777778888888888888
Q ss_pred HHHHHHHHHHHCCCCC-CHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHH
Q 000837 963 HVKRVLDELQENELLP-DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQE 1040 (1262)
Q Consensus 963 ~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 1040 (1262)
+|++.|+..+.. +| |...||.|...++...+.++|+..|++.++ +.|.. .....|.-+|...|.+++|.+.|-.
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 888888888774 34 567888888888888888888888888888 45653 2334455567788888888888776
Q ss_pred HHHc---C------CCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1041 MRLK---G------LVHDSIVQNAIAEGLLSRGKLQE 1068 (1262)
Q Consensus 1041 ~~~~---g------~~~~~~~~~~l~~~~~~~g~~~~ 1068 (1262)
.+.. + ..++..+|.+|=.++.-.++.+-
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 6542 1 11123456555555555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-05 Score=82.66 Aligned_cols=207 Identities=5% Similarity=-0.017 Sum_probs=145.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 186 LMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVG-DVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 186 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
.++...++.++|..+..++++.. |.+..+|+.....+...| ++++++..++++.+.+++ +..+|+.....+.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 33445567778888888888776 667788888777888887 679999999999988776 66778877777777776
Q ss_pred h--hHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH-
Q 000837 265 T--HLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK---KDF- 338 (1262)
Q Consensus 265 ~--~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~- 338 (1262)
. +.++.+++++++..++ |..+|+....++...|+++++++.+.++++.+ +.+...|+-....+.+. |+.
T Consensus 122 ~~~~~el~~~~kal~~dpk----Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK----NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 3 6788999999988765 78889888888888899999999999999876 44556666555544443 222
Q ss_pred ---HHHHHHHHHc--CCCCCcccHHHHHHHHHhh----CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 000837 339 ---EDLLSFFTEM--KCTPDVLAGNRIIHTLCSI----FGSKRADLFVQELEHSGFRPDEITFGILIGWTCR 401 (1262)
Q Consensus 339 ---~~A~~~~~~~--~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 401 (1262)
++++.+..++ ..+-|..+|+-+...+... ++..+|.+++.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3555555444 3445566777777777662 33455666666655433 2244555556666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00015 Score=95.09 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCchHHHHHHHHHhhhh
Q 000837 565 LIKMVHARGNLKAALLLVDEMVRW----GQELS-LSVFSALVKGLCASRSHIKACTGLLEKMPKL 624 (1262)
Q Consensus 565 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~ 624 (1262)
+..++...|+.++|...+++.... |..++ ..+...+...+...|+ .++|...+.+..+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-~~~A~~~L~~Al~l 760 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR-KSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 444555566666666666555432 11111 1233344445555555 66666666666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0057 Score=67.87 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000837 996 VSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEV---GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072 (1262)
Q Consensus 996 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 1072 (1262)
.+++..++++.+..-..-+...|..+.+---.. ...+...++++++...-..--..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 455666666666532222333444333311111 13556666666666542221234666777777777778888888
Q ss_pred HHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-HHHHHHHcccCChhHHHHHHHHHHHCCCC
Q 000837 1073 LDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNS-SSYDSIISTCNKLDPAMDLHAEMMARDLK 1149 (1262)
Q Consensus 1073 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~ll~~~g~~~~A~~~~~~~~~~~~~ 1149 (1262)
|.++.+.+..+ +...+++++.-|| .++.+-|.++|+.-+++ |-.|.- .-|...+...|+-..|..+|+++...++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 88888877666 5667777777665 67888888888877765 322221 12333444477778888888888877666
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHh
Q 000837 1150 P--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT----PTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1150 p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
| ...+|..++.--+.-|+++-+.++-+++... ++ +....-..+.+.|.-.+.+.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhccccc
Confidence 6 3478888888888888888888888877653 22 11122334555565555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.005 Score=68.25 Aligned_cols=423 Identities=14% Similarity=0.128 Sum_probs=238.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSA 845 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 845 (1262)
-+-|..+|+.||+-+..+ .++++...++++... .+.....+..-|..-.+.++++..+.+|.+.+..-. +...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 366888999999888777 899999999998754 233456777778888888999999999998876533 4555665
Q ss_pred HHHHHhh-cCCHH----HHHHHHHHHH-HCCCCCCHH-hHHHHH---HH------HHhcCCHHHHHHHHHHHHHCCCccC
Q 000837 846 FISGFCV-TGKAE----EASKLFRDML-SQGMLLEDE-VYNMLI---QG------HCEANNLRKVRELLSAMIRKRLSLS 909 (1262)
Q Consensus 846 li~~~~~-~g~~~----~A~~~~~~m~-~~g~~pd~~-t~~~ll---~~------~~~~g~~~~a~~~~~~~~~~~~~~~ 909 (1262)
.+..-.+ .++.. ...+.|+-.+ +.|+.+-+. .|+..+ .. +....+++...++++.++..-+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 22222 2223333333 334433222 233222 21 1222234445555555544311100
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhh-----
Q 000837 910 ISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE--NELLPDEVT----- 982 (1262)
Q Consensus 910 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~~----- 982 (1262)
...|+.. . .++..+ |..+-..++ --+...+..|..+++++.. +|+.-...+
T Consensus 172 EkLW~DY----~---~fE~~I-------------N~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 172 EKLWKDY----E---AFEQEI-------------NIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred HHHHHHH----H---HHHHHH-------------HHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 1111111 0 011100 000100000 0112233444444444432 122211111
Q ss_pred ----------HHHHHHHhhcC------CCh--hHHHHHHHHHHH-CCCCCChhcHHH-----HHHHHHhcCC-------h
Q 000837 983 ----------YNFLIYGFSKH------KDV--SSSKYYIAAMVS-KGFNPSNRSLRS-----VISCLCEVGE-------L 1031 (1262)
Q Consensus 983 ----------~~~li~~~~~~------g~~--~~A~~~~~~m~~-~g~~p~~~~~~~-----li~~~~~~g~-------~ 1031 (1262)
|..+|..=... |.. ....-++++.+. .+..|+.....+ .-+.+...|+ .
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 22222211111 000 011112222222 233443321111 1113334444 3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 000837 1032 GKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRG---KLQEAEHFLDQIVDK-DLVPDTINYDNLIKRFCGYGRLDKAVDL 1107 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 1107 (1262)
+++..+++..++.-..-+..+|..+.+-=-..- ..+....++++++.. ...| ..+|..+++.-.+..-+..|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHH
Confidence 455556665554322234444544443222222 256666777777653 2344 35788888888888899999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000837 1108 LNIMLKKGSTP-NSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT 1184 (1262)
Q Consensus 1108 ~~~~~~~~~~p-~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~ 1184 (1262)
|.++.+.+..+ .+..+.+++.. .++..-|.++|+--++. ...++..-...+.-+...|+-+.|..+|++.+..+..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999987777 67777777776 89999999999998862 3345555578888899999999999999999988666
Q ss_pred CC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1185 PT--QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1185 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
|+ ..+|..++.--.+-|+...++++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66 689999999999999999999999988774
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-05 Score=86.01 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=137.8
Q ss_pred ccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 000837 907 SLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFL 986 (1262)
Q Consensus 907 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 986 (1262)
+|--..-..+...+.+.|-...|..+|+++.. |...+..|...|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34444445566666777777777777766543 556666777777777777776666663 4667777777
Q ss_pred HHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 987 IYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 987 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
.+......-+++|.++.+..... .-..+.......+++.++.+.++.-.+. -+....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhh
Confidence 76666666667777766654432 0111111122356777777777766553 122466777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc--cCChhHHHHHHHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST--CNKLDPAMDLHAEM 1143 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--~g~~~~A~~~~~~~ 1143 (1262)
+.|...|..... ..|| ...||++..+|.+.|+..+|...+.+.++.+..|=...-+.++.. -|.+++|++.+.++
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777777766 4555 667777777777777777777777777776654444433333333 67777777777776
Q ss_pred HH
Q 000837 1144 MA 1145 (1262)
Q Consensus 1144 ~~ 1145 (1262)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=79.36 Aligned_cols=101 Identities=14% Similarity=-0.007 Sum_probs=84.9
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|...|+.... +.| +...|..++.++.+.|++++|+..++++.+.. +.++..+..++..+...|++++|++
T Consensus 37 ~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 37 EGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred cCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666664 455 77889999999999999999999999999863 5578999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNS 1235 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~ 1235 (1262)
.+++.++ ..|++...|...++....
T Consensus 114 ~~~~Al~--~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 114 AFQTAIK--MSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHH--hCCCChHHHHHHHHHHHH
Confidence 9999999 789999888888776653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00016 Score=79.30 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=140.3
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC-chhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcC
Q 000837 223 GYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK-VTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDR 301 (1262)
Q Consensus 223 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g 301 (1262)
.+...++.++|+..+.++.+.++. +..+|+.....+.+.+ .+++++..++++++..++ +..+|+.....+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHcC
Confidence 345567888999999999988765 6678888888888887 579999999999988764 5556766655555666
Q ss_pred CH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhh---CCh----
Q 000837 302 KI--QESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSI---FGS---- 370 (1262)
Q Consensus 302 ~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~---g~~---- 370 (1262)
+. +++..+++++++.. +.+..+|+-...++.+.|++++|++.++++ ..+.|..+|+....++.+. |+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 53 66788888888765 567777877777788888888888888888 3345566677666555443 222
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 000837 371 KRADLFVQELEHSGFRPDEITFGILIGWTCR----EGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436 (1262)
Q Consensus 371 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 436 (1262)
+++.++..++.... +-|...|+-+...+.. .++..+|.+.+.+..+.++ .+......|++.|+.
T Consensus 200 e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 35566665665543 2345566666666655 2344557676666655432 245566666666664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00016 Score=87.96 Aligned_cols=230 Identities=9% Similarity=0.075 Sum_probs=170.3
Q ss_pred CHhhHHHHHHHhhcCCChhHHHHHHHHHHHC-CCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 000837 979 DEVTYNFLIYGFSKHKDVSSSKYYIAAMVSK-GFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 979 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 1054 (1262)
++..|-..|.-+.+.++.++|.++.++++.. +++-. ...|.++++.....|.-+...++|+.+.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3467777788888888899999998888873 22222 235677777777778888888899988874 33467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-----HHHHcc
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSY-----DSIIST 1129 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~ll~~ 1129 (1262)
.|...|.+.+.+++|.++++.|.++ .......|..++..+.+..+.+.|..++.+.++. -|...+. ...+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999875 3345678888899999998889999999888875 3442221 111222
Q ss_pred -cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhH
Q 000837 1130 -CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT--QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 -~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 1205 (1262)
+|+.+.+..+|+..+. -.| ..+.|+.+++.-.++|+.+.+.++|++++..++.|- --.|...+.---..|+-+.
T Consensus 1612 k~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8999999999999886 334 668899999999999999999999999999888775 3444455544555677555
Q ss_pred HHHHHHHHHH
Q 000837 1206 ASELMQAMQQ 1215 (1262)
Q Consensus 1206 A~~~~~~~~~ 1215 (1262)
+..+=.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.3e-05 Score=79.53 Aligned_cols=186 Identities=14% Similarity=-0.004 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccCh-
Q 000837 174 FRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSN---EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL- 249 (1262)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~- 249 (1262)
....+..+...+..+...|++++|...++++.... |.++ .++..+..+|...|++++|+..|+++.+..+....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 44567889999999999999999999999998765 3333 57788999999999999999999999886553222
Q ss_pred -hhHHHHHHHHHhc--------CchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000837 250 -SCYRVFINHLVKM--------KVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEP 320 (1262)
Q Consensus 250 -~~~~~l~~~l~~~--------~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 320 (1262)
.++..+..++... +++++|.+.|++++...+. +...+..+.... . ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~~~-~---~~~------~~------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN----SEYAPDAKKRMD-Y---LRN------RL------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC----ChhHHHHHHHHH-H---HHH------HH-------
Confidence 2566666666654 7889999999999887643 222222111110 0 000 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCC----CcccHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 000837 321 SSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTP----DVLAGNRIIHTLCSIFGSKRADLFVQELEHS 383 (1262)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 383 (1262)
......+...|.+.|++.+|+..|++. ...| ....+..+..++.+.|++++|...++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011124556788899999999999988 3333 2457889999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-05 Score=91.34 Aligned_cols=161 Identities=10% Similarity=0.020 Sum_probs=136.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH
Q 000837 174 FRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR 253 (1262)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 253 (1262)
|.+.++++..++.+..+.|++++|..+++.+.+.. |++..++..++..+.+.+++++|+..+++....++. +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 77889999999999999999999999999998876 889999999999999999999999999999998766 788899
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 254 VFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYC 333 (1262)
Q Consensus 254 ~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 333 (1262)
.+..++.+.|++++|..+|++++..++. +..++..+..++...|+.++|...|++.++.- .+.+.-|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~---- 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH----
Confidence 9999999999999999999999985532 47788899999999999999999999998753 34445555433
Q ss_pred hcCCHHHHHHHHHHc
Q 000837 334 EKKDFEDLLSFFTEM 348 (1262)
Q Consensus 334 ~~g~~~~A~~~~~~~ 348 (1262)
+++..-..+++++
T Consensus 230 --~~~~~~~~~~~~~ 242 (694)
T PRK15179 230 --VDLNADLAALRRL 242 (694)
T ss_pred --HHHHHHHHHHHHc
Confidence 3344444555555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.8e-05 Score=85.58 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
...--.++..+...|..+.|..++++. +.|...|..|...|+..+|-++..+-.+. +|++..|..+++
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 334457788888888888888888753 67888888888888888888888877773 568888888888
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKD 337 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 337 (1262)
..-...-+++|+++++..... +-..+.....+.++++++.+-++.-.+.. +.-..+|-....+..+.++
T Consensus 466 v~~d~s~yEkawElsn~~sar----------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR----------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH----------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 887777788888887764221 11222222334677777777777666554 4445666666666666777
Q ss_pred HHHHHHHHHHc-CCCC-CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 338 FEDLLSFFTEM-KCTP-DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEI 415 (1262)
Q Consensus 338 ~~~A~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 415 (1262)
...|.+.|... ...| +...||.+-.+|.+.++-.+|...+.|..+.+ .-+...|-.-+....+.|.+++|++.+.++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77777776666 3333 34557777777777777777777777766655 223333444455556677777777766665
Q ss_pred H
Q 000837 416 L 416 (1262)
Q Consensus 416 ~ 416 (1262)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 5
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.5e-05 Score=79.87 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=131.4
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---h
Q 000837 1014 SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD---SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-T---I 1086 (1262)
Q Consensus 1014 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~ 1086 (1262)
....+..+...+...|++++|...++++.... +.+ ..++..+..++...|++++|+..++++.+. .|+ . .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 44566677778889999999999999998752 222 256788899999999999999999999874 343 2 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 000837 1087 NYDNLIKRFCGY--------GRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVL 1158 (1262)
Q Consensus 1087 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 1158 (1262)
++..+..++... |++++|++.++++.+. .|+...... +...+..+.. ........+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~----------a~~~~~~~~~----~~~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPD----------AKKRMDYLRN----RLAGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHH----------HHHHHHHHHH----HHHHHHHHH
Confidence 566666667654 7788899999888875 444322111 1111111110 000122467
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1159 VHKLCQEGRTTEAERLLISMVQLGD-TP-TQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1159 ~~~~~~~g~~~~A~~l~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
+..+.+.|++++|+..++.+.+... .| .+..+..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7789999999999999999997521 12 3678899999999999999999999988774
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00064 Score=82.95 Aligned_cols=277 Identities=10% Similarity=0.088 Sum_probs=173.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 000837 910 ISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYG 989 (1262)
Q Consensus 910 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~ 989 (1262)
...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++..++..+ .++..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3455566666667777777777776555442 11344444444466666665554433 22333
Q ss_pred hhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 990 FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 990 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
+....++.....++..|... .-+...+..+..+|-+.|+.++|..+++++++.. +.+..+.|.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 33444444444444455542 2244567778888888888888888888888865 44588888888888888 88888
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHC-CC
Q 000837 1070 EHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMAR-DL 1148 (1262)
Q Consensus 1070 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~-~~ 1148 (1262)
++++.++.+. |...+++.++.++|.++... .|+... .-..+.+++... +.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d------------~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFD------------FFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccch------------HHHHHHHHHHhhhcc
Confidence 8888888763 55667888888888888875 344322 222333333321 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCCChhhHHH
Q 000837 1149 KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ-SGYSPDFSTHWS 1227 (1262)
Q Consensus 1149 ~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ 1227 (1262)
.--..++.-+...|...+++++++.+++.+++.. +.|..+...++..|. +.+.. -..++..++ .|+.-.....-.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~ 295 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKD 295 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHH
Confidence 2334566666677778889999999999999863 446777777777766 44444 233333322 456666566667
Q ss_pred HHHHhhcccccccc
Q 000837 1228 LISNLRNSNDKDNN 1241 (1262)
Q Consensus 1228 ~l~~l~~~~~~~~~ 1241 (1262)
+|++.-.-...+.+
T Consensus 296 ~i~~fek~i~f~~G 309 (906)
T PRK14720 296 CIADFEKNIVFDTG 309 (906)
T ss_pred HHHHHHHHeeecCC
Confidence 77777665555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00015 Score=74.02 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHH
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAE 1142 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~ 1142 (1262)
.++.++++..+++.++.+ +.|...|..|...|...|++++|+..|++..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----------------------------- 101 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ----------------------------- 101 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------
Confidence 445555555555555532 11355566666666666666666666655554
Q ss_pred HHHCCCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1143 MMARDLKP-SMNTWHVLVHKL-CQEGR--TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1143 ~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
+.| +...+..++.++ ...|+ .++|.++++++++.+ +.++..+..++..+...|++++|+..|+++++.
T Consensus 102 -----l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 102 -----LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred -----hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334 455666666653 45555 467777777777642 335666666777777777777777777777663
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0005 Score=83.37 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 000837 1046 LVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYD 1124 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1124 (1262)
+..+...+..|..+....|++++|+.+++...+ +.|+ ...+..++.++.+.+++++|+..+++++.. .|+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 455677788888888888888888888888887 5666 566777778888888888888888887775 46655544
Q ss_pred HHHcc----cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1125 SIIST----CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYS 1191 (1262)
Q Consensus 1125 ~ll~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~ 1191 (1262)
..... .|++++|.++|+++.. ..| ++.++..++.++-..|+.++|...|+++.+. ..|-...|.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~ 226 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHH
Confidence 44333 7777777777777775 334 4678888888888888888888888888875 344444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00076 Score=82.47 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=140.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcH
Q 000837 944 NLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPD-----EVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSL 1018 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 1018 (1262)
+...|-..|......++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. ......|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 5566777777788888888888888877654 3221 145666666666666667777888887773 2334556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHH
Q 000837 1019 RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD---TINYDNLIKRF 1095 (1262)
Q Consensus 1019 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~ 1095 (1262)
..|...|.+.+..++|.++++.|.++ +.-...+|...++.+.++++-++|..++.++++. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 77788888888888888888888876 4456778888888888888888888888888763 333 22333334445
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCC
Q 000837 1096 CGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPS 1151 (1262)
Q Consensus 1096 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~ 1151 (1262)
.+.|+.+.+..+|+.++.. ++--...|+.++.. .|+.+.+..+|++++..++.|.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 6778888888888887775 23344557777776 6777888888888888777773
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=66.87 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 000837 1030 ELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 1101 (1262)
.+.+|.-+|++|.++ ..|++.+.+-.+.++...|++++|..++++++.+... ++.+...++-.-...|..
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 344555555555443 3445555555555555555555555555555543222 333444444333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.7e-05 Score=75.38 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=75.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHH-HhcCc--hhH
Q 000837 191 VGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHL-VKMKV--THL 267 (1262)
Q Consensus 191 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l-~~~~~--~~~ 267 (1262)
.++.+++...+....+.. |++...|..|+..|...|++++|+..|++..+.++. +...+..+..++ ...|+ +++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 344455555555555554 556677777777777777777777777777666544 556666666653 45555 467
Q ss_pred HHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000837 268 AFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFG 317 (1262)
Q Consensus 268 A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 317 (1262)
|..++++.++.++. +..++..+...+...|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN----EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777666643 45556666666666666666666666666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0015 Score=65.89 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 000837 812 IPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 812 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~ 891 (1262)
++-+.-.|.+..++..-....... .++..-.-+.++|...|....... ++.... .|....+..+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 444555566666666655543331 122222234455555555433222 222211 23333333333333334443
Q ss_pred HHHH-HHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 892 RKVR-ELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDE 970 (1262)
Q Consensus 892 ~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 970 (1262)
+... ++.+.+.......+......-+..|++.+++++|++...... +......=...+.+..+.+-|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 333333333333333333333455666677777766665421 112222223445556666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHhhc----CCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 000837 971 LQENELLPDEVTYNFLIYGFSK----HKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGL 1046 (1262)
Q Consensus 971 m~~~g~~pd~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 1046 (1262)
|.+- -+..|.+.|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 6653 244566656555543 24566666677766653 456666666666666666777777777776666532
Q ss_pred CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 000837 1047 VHDSIVQNAIAEGLLSRG-KLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1047 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 1078 (1262)
. ++.+...++-.-...| +.+-..+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 2 3444333333222333 33334445555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0001 Score=70.94 Aligned_cols=100 Identities=10% Similarity=-0.075 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
|..+...+..+...|++++|...+..+.... |.+..+|..+..++...|++++|+..|++..+.++. +...+..+..
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~ 100 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 3345566777788888888888888877665 557777888888888888888888888888776643 6777777888
Q ss_pred HHHhcCchhHHHHHHHHHHHcCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGN 280 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~ 280 (1262)
++...|++++|...|++.++..+
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888777664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-05 Score=78.75 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=88.7
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
.+++.+|+..|.+.++ +.| |+..|..-+.+|++.|.++.|.+=.+.++. +.|. ..+|.+|+.+|...|++++|+
T Consensus 94 ~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHH
Confidence 5677788888888776 777 667778888999999999999999999987 4565 789999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhccccccc
Q 000837 1208 ELMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1208 ~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~ 1240 (1262)
+.|++.++ ++|++++++..|.-..+....-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999 89999999998887766554433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0014 Score=80.17 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1187 QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1187 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
......+++.+...|..++..+.+++++...-.....-.|.+-...+.
T Consensus 582 ~~l~~~~~~~L~~~g~~~~l~~~~~~~~~~~~~~~e~~iW~~k~~~~~ 629 (906)
T PRK14720 582 HKVNKYVFDSLYEEGKFDELNSLFKYVIKNYKEYPEAFIWVAKSILSY 629 (906)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhccCccchhhhhhhhccc
Confidence 555556778888888888888888888875333333335555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00042 Score=70.00 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHH
Q 000837 213 SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD 292 (1262)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 292 (1262)
...+ ..+-..|.-.|+-+....+..+.....+. +....+..+....+.|++..|...+.+.....+ +|...|+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p----~d~~~~~~ 139 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP----TDWEAWNL 139 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC----CChhhhhH
Confidence 3344 55555666666666666666654433222 334444466666666666666666666655443 35566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCCh
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGS 370 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 370 (1262)
+.-+|.+.|++++|..-|.+..+.- +-+...+|-+.-.|.-.|++++|..++.+. .-.-|...-..|..+....|++
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 6666666666666666666665542 334445555555555566666666666655 2223455555555555666666
Q ss_pred hHHHHHHH
Q 000837 371 KRADLFVQ 378 (1262)
Q Consensus 371 ~~A~~~~~ 378 (1262)
++|.++-.
T Consensus 219 ~~A~~i~~ 226 (257)
T COG5010 219 REAEDIAV 226 (257)
T ss_pred HHHHhhcc
Confidence 66655543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0042 Score=68.57 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=71.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 000837 1091 LIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQE 1165 (1262)
Q Consensus 1091 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 1165 (1262)
....+...|.+++|+..++.++.. .|++..|..+... .|+.++|.+.++++.. ..|+ ...+..++.+|.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhc
Confidence 333444566666666666666654 5566555555444 5666666666666665 4554 44555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1166 GRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1166 g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
|+..+|+++++..... .+.|+..|..|..+|...|+..+|...+.+...
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666666666653 355566666666666666666555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0024 Score=70.36 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 000837 254 VFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPS-SLVFNEVAYGY 332 (1262)
Q Consensus 254 ~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~ 332 (1262)
.....+...++++.|+..+..++..-+. |++........+.+.++..+|.+.++++... .|+ ....-.+..+|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3334445566677777777776665532 4555555566666777777777777777665 233 45555666777
Q ss_pred HhcCCHHHHHHHHHHc--CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 000837 333 CEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALV 410 (1262)
Q Consensus 333 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 410 (1262)
.+.|++.+|+..+... ..+.|...|..|..+|...|+..+|..-..|+. ...|++++|..
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~ 446 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAII 446 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHH
Confidence 7777777777777766 445566777777777777777777666555442 23566667766
Q ss_pred HHHHHHhC
Q 000837 411 FFSEILSR 418 (1262)
Q Consensus 411 ~~~~m~~~ 418 (1262)
.+....+.
T Consensus 447 ~l~~A~~~ 454 (484)
T COG4783 447 FLMRASQQ 454 (484)
T ss_pred HHHHHHHh
Confidence 66666544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00097 Score=67.49 Aligned_cols=163 Identities=14% Similarity=0.046 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
.+++ ......+.-.|+-+.....+....... +.+..+...++....+.|++.+|+..|.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 4555 666666777777666666655544333 4466777789999999999999999999998875 45899999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 336 (1262)
-+|.+.|+++.|..-|.+.++..+. +....+.+.-.+.-.|+++.|+.++......+ .-|..+-.-+..+....|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~----~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN----EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC----CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 9999999999999999999998764 67788999999999999999999999998775 447777778888899999
Q ss_pred CHHHHHHHHHHc
Q 000837 337 DFEDLLSFFTEM 348 (1262)
Q Consensus 337 ~~~~A~~~~~~~ 348 (1262)
++++|+.+-..-
T Consensus 217 ~~~~A~~i~~~e 228 (257)
T COG5010 217 DFREAEDIAVQE 228 (257)
T ss_pred ChHHHHhhcccc
Confidence 999999877654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0031 Score=63.14 Aligned_cols=184 Identities=15% Similarity=0.196 Sum_probs=111.2
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHH
Q 000837 1030 ELGKSLELSQEMRL---KG-LVHDS-IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDK 1103 (1262)
Q Consensus 1030 ~~~~A~~~~~~~~~---~g-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 1103 (1262)
+.++..+++.++.. .| ..++. ..|..++-+....|+.+.|...++++.++ . |. ..+-..-...+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 34445555554443 22 33332 23344445555666777777777776654 2 33 2222222333455677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1104 AVDLLNIMLKKGSTPNSSSYDSI---ISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1104 A~~~~~~~~~~~~~p~~~~~~~l---l~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
|+++++.+++.. +-|.+++..- +.+.|+.-+|++.+....+ .+..|.+.|..+...|...|+++.|.--+++++=
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777653 3344444322 2226776677776666665 2445788888888888888888888888888875
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCC
Q 000837 1181 LGDTP-TQEMYSSVVNRYSLENN---LGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1181 ~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~ 1221 (1262)
..| ++-++..++..++-.|. ..-|.++|.+.++ +.|.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~ 223 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPK 223 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChH
Confidence 344 45566678887776664 4557788888887 4553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=69.26 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=74.8
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|.+.++++.. ..| ++..|..++..+.+.|++++|...+++..+.+ +.++..+..++..|...|++++|..
T Consensus 30 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 30 QGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred cccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555556555555554 234 67788899999999999999999999988763 5568888889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHH
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
.+++.++ ..|++........
T Consensus 107 ~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 107 ALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred HHHHHHH--hccccchHHHHHH
Confidence 9999999 5787776544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.092 Score=57.49 Aligned_cols=219 Identities=13% Similarity=0.133 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHHHCCCCC----ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhc
Q 000837 995 DVSSSKYYIAAMVSKGFNP----SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQ-------NAIAEGLLSR 1063 (1262)
Q Consensus 995 ~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-------~~l~~~~~~~ 1063 (1262)
+.+++..+.+.+....+.+ -..++..++....+.++..+|.+.+.-+.-. .|+...- ..+.+..+.-
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcc
Confidence 5556666555555432222 1235666677777778888888777766542 3332211 2222333311
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhHHHHH---HHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCC--
Q 000837 1064 ----GKLQEAEHFLDQIVDKDLVPDTINYDNL---IKRFCGYGR-LDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNK-- 1132 (1262)
Q Consensus 1064 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~-- 1132 (1262)
-+...=+.+++.....++... .....| +.-+-+.|. -++|+++++..++-. .-|...-+.+... ...
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 123334555666655443321 111122 233445555 788888888887741 2222222222222 222
Q ss_pred -------hhHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1133 -------LDPAMDLHAEMMARDLKP----SMNTWHVLVHK--LCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSL 1199 (1262)
Q Consensus 1133 -------~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~ 1199 (1262)
+..-+++-+-+.+.|+.| +...-+.|.++ ++.+|++.++.-.-.-..+ +.|++.+|.-+|-.+..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 333333333344567877 56677888887 6788999999876666665 78999999999999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhh
Q 000837 1200 ENNLGKASELMQAMQQSGYSPDFST 1224 (1262)
Q Consensus 1200 ~g~~~~A~~~~~~~~~~~~~p~~~~ 1224 (1262)
..++++|..+++. +.|+..+
T Consensus 508 ~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 508 NKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred HhhHHHHHHHHHh-----CCCchhh
Confidence 9999999999886 4666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00068 Score=65.03 Aligned_cols=110 Identities=12% Similarity=-0.021 Sum_probs=84.1
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 000837 164 FKWASKLYKGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGR 243 (1262)
Q Consensus 164 f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 243 (1262)
|+.+..++|. +..+...++..+...|++++|.+.+..+...+ |.++..+..+...|...|++++|...|++..+.
T Consensus 6 ~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 6 LKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444332 45677788888888888888888888887765 557788888888888888888888888888777
Q ss_pred CCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 244 GLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 244 ~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
++. +...+..+...+...|+++.|...|++.++..
T Consensus 81 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 DPD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 543 56677777888888888888888888887766
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0029 Score=63.42 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=136.8
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHcccCCh
Q 000837 1063 RGKLQEAEHFLDQIVD---KD-LVPDT-INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS----YDSIISTCNKL 1133 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~---~~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~g~~ 1133 (1262)
..+.++..+++.+++. .| ..|+. ..|..++-+....|+.+.|...++.+... .|.+.- ...++.+.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3567777777777763 24 55664 35666667778899999999999999886 244332 33334449999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 000837 1134 DPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQA 1212 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1212 (1262)
++|+++|+.+++.. | |..++..-+.+.-..|+.-+|++.+....+. +..|...|..+...|...|++++|.=.++.
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999743 5 6677777777788889889999999999986 788999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhh-ccccccccccchhhhhhhh
Q 000837 1213 MQQSGYSPDFSTHWSLISNLR-NSNDKDNNRNSQGFLSRLL 1252 (1262)
Q Consensus 1213 ~~~~~~~p~~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~ 1252 (1262)
++- ..|-++.+..-+++++ .-+|..+-+-+..+..+.+
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999 6888777666666654 3444333333333444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.7e-05 Score=52.66 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=18.4
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSGFRPD 388 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 388 (1262)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.3e-05 Score=52.39 Aligned_cols=33 Identities=48% Similarity=0.853 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 000837 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGITPS 458 (1262)
Q Consensus 426 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 458 (1262)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00095 Score=64.68 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HH-HHHHHcc-----cCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 000837 1098 YGRLDKAVDLLNIMLKKGSTPNS-SS-YDSIIST-----CNKLDPAMDLHAEMMARDLKPS--MNTWHVLVHKLCQEGRT 1168 (1262)
Q Consensus 1098 ~g~~~~A~~~~~~~~~~~~~p~~-~~-~~~ll~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 1168 (1262)
.++...+.+.++.+.+.. |+. .. ...+..+ .|++++|.+.|+.+.+..-.|. ......++.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 556666666666666541 222 11 1111111 5666666666666665331221 23456778889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 000837 1169 TEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAM 1213 (1262)
Q Consensus 1169 ~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 1213 (1262)
++|+..++.... ....+..+...+++|...|++++|+..|++.
T Consensus 102 d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999977443 2334667778999999999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.13 Score=55.18 Aligned_cols=252 Identities=15% Similarity=0.207 Sum_probs=163.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChhH
Q 000837 957 SSGNIFHVKRVLDELQENELLPDE--VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS-NRSLRSVISCLCEVGELGK 1033 (1262)
Q Consensus 957 ~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 1033 (1262)
-.|++++|.+-|+.|... |.. .-...|.-...+.|+.+.|.++-++.-.. .|. .......+...|..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHH
Confidence 357777777777777762 211 11222333334667777787777776653 332 3455667788888888888
Q ss_pred HHHHHHHHHHc-CCCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCChHHHHH
Q 000837 1034 SLELSQEMRLK-GLVHDSI--VQNAIAEGL---LSRGKLQEAEHFLDQIVDKDLVPDT-INYDNLIKRFCGYGRLDKAVD 1106 (1262)
Q Consensus 1034 A~~~~~~~~~~-g~~~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 1106 (1262)
|+++++.-.+. -+.++.. .--.|+.+- .-.-+...|...-.+..+ +.||. ..-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 88888765543 2233321 111222111 112346666666666655 56663 233444578889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000837 1107 LLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMA-RDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD 1183 (1262)
Q Consensus 1107 ~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~ 1183 (1262)
+++.+.+. .|-.......+.. .|+. +++-+++..+ ..++| +......++.+-...|++..|..--+.... .
T Consensus 285 ilE~aWK~--ePHP~ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 285 ILETAWKA--EPHPDIALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHHHhc--CCChHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 99999986 4555555555555 4542 2333333222 12566 567778888888999999998888887776 5
Q ss_pred CCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCC
Q 000837 1184 TPTQEMYSSVVNRYSLE-NNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1184 ~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.|..+.|..+.++-... ||-+++...+-+.+...-+|.
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 88899999998887766 999999999999998765654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.17 Score=55.53 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred hhhhccCCCHHHHHHHHHHHhhcCCCCC--------hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 000837 534 GNGLYLDTDLDEYERKLSKIIEDSMIPN--------FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLC 605 (1262)
Q Consensus 534 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 605 (1262)
+-.+.+.+++.++..+|.++.+..-... -+.++.+|.. .+.+.-...+.++.+. .| ...|-.+..++.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 3455678889999999998877654432 3445555543 3444444455555442 22 223333433332
Q ss_pred -hCCCchHHHHHHHHHhhhh--cCCC---C---------hHHHHHHHHHHHccCChHHHHHHHHHHhhc----CCCCCHh
Q 000837 606 -ASRSHIKACTGLLEKMPKL--ANKL---D---------QESLNLLIQACCKKGLVRDGKKIFDGMLQR----GLTIENE 666 (1262)
Q Consensus 606 -~~~~~~~~a~~l~~~~~~~--~~~~---~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~ 666 (1262)
-..+++..|.+.+...... +..+ | -..-+..+..+...|++.++..+++++... ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 2333477887777766544 2211 1 112234455666777777777777666543 3335667
Q ss_pred hHHHHHHHHHh
Q 000837 667 SYTTLLMSLCK 677 (1262)
Q Consensus 667 ~~~~li~~~~~ 677 (1262)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77765555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=50.47 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 000837 426 TYNSLISGMFKEGMSKHAKEILDEMVNRGITP 457 (1262)
Q Consensus 426 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 457 (1262)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.17 Score=54.21 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=144.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCcch----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhH
Q 000837 923 EGGVPWALNLKELMLGQNKSHNLII----FNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSS 998 (1262)
Q Consensus 923 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 998 (1262)
.|+++.|.+-|+.|... +.+ ...|.-.-.+.|..+.|..+-++.-+.- ..-...+...+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 46666666666666542 222 1122222234566666666665554431 1123556666777777777777
Q ss_pred HHHHHHHHHH-CCCCCChhcH--HHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 000837 999 SKYYIAAMVS-KGFNPSNRSL--RSVISCLC---EVGELGKSLELSQEMRLKGLVHDSI-VQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 999 A~~~~~~m~~-~g~~p~~~~~--~~li~~~~---~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
|+++.+.-.+ +-+.++..-- ..|+.+-. -..+...|...-.+..+ +.||.. .--.-..+|.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 7777776655 2234443211 12222111 12245555555555544 455522 23344567889999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHC
Q 000837 1072 FLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIIST----CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~ 1146 (1262)
+++.+.+....|++. +...+.+.|+. ++.-+++..+. .++|+..--...+.. .|++..|..--+....
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 999999876666532 12234455554 44444444332 356665543333332 7888888877777765
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC
Q 000837 1147 DLKPSMNTWHVLVHKLCQE-GRTTEAERLLISMVQLGDTP 1185 (1262)
Q Consensus 1147 ~~~p~~~~~~~l~~~~~~~-g~~~~A~~l~~~~~~~~~~p 1185 (1262)
..|....|-.|.+.-... |+-.++..++.+.++..-.|
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 788888898888886554 99999999999998754444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0027 Score=71.09 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChh
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLD 1134 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~ 1134 (1262)
.|+..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|++++++.++. .|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~--------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQ--------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCC---------------
Confidence 33444444455555555555555532 33 2233445555555555555555555543 121
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
+...+..-+..|...++++.|+++.+++++. .+.+..+|..|+.+|...|++++|+..++
T Consensus 233 ----------------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 233 ----------------DSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred ----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 3344444444455555555555555555542 12234455555555555555555554444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=75.56 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=82.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|++.|++++. +.| +...|..++.+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+.
T Consensus 15 ~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 15 DDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777777777775 455 56788888899999999999999999998852 4467888889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhccc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNSN 1236 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 1236 (1262)
.++++++ +.|++......+..+....
T Consensus 92 ~~~~al~--l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 92 ALEKGAS--LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 9999988 7888888887777775544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0051 Score=58.14 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=74.8
Q ss_pred HHHHHcccCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 000837 1123 YDSIISTCNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1123 ~~~ll~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g 1201 (1262)
+...+...|++++|.++|+-+.. +.| +..-|..|+-++...|++++|+..+..+.... +.++..+..++..+...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344447888888888888876 667 67788899999999999999999999999864 456888888999999999
Q ss_pred CHhHHHHHHHHHHHc
Q 000837 1202 NLGKASELMQAMQQS 1216 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~ 1216 (1262)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988874
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=49.78 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=15.5
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSGFRP 387 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 387 (1262)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00021 Score=61.49 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDL-KPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|+.+++++.+..- .|+...+..++.+|.+.|++++|..++++ .+.+ ..+......++..+...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3678889999988887322 12456677789999999999999999998 4322 2344666677999999999999999
Q ss_pred HHHHH
Q 000837 1209 LMQAM 1213 (1262)
Q Consensus 1209 ~~~~~ 1213 (1262)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0037 Score=60.54 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=71.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC---hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPS---NRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD--SIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~ 1066 (1262)
..++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+.+....|. ......|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3666667766777777642 111 11222344566677777777777777777642222 23445567777777778
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIM 1111 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 1111 (1262)
++|+..++...... .....+..+..+|...|++++|...|+..
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777776643322 23445666677777788888877777653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0057 Score=63.35 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred HhhcCCChhHHHHHHHHHHHCCCCCCh-hcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 000837 989 GFSKHKDVSSSKYYIAAMVSKGFNPSN-RSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~ 1066 (1262)
-+.+.+++.+|+..|.++++ +.|+. +.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 35577888888888888888 46644 44455677888888888888888888774 444 77888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHH
Q 000837 1067 QEAEHFLDQIVDKDLVPDTINYD 1089 (1262)
Q Consensus 1067 ~~A~~~~~~m~~~~~~p~~~~~~ 1089 (1262)
++|++.|++.++ +.|+-.+|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888888888887 677655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00053 Score=56.23 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=55.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1163 CQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1163 ~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
.+.|++++|+++++++.+. .+.+...+..++..|...|++++|.++++++.. ..|+++.++.+++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHhcC
Confidence 5678999999999999875 244788888899999999999999999999988 588888788877654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00065 Score=71.99 Aligned_cols=283 Identities=14% Similarity=0.060 Sum_probs=153.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHhhcCCChhHHHHHHHHHH--H--CCCC-CChhcHHHHHHHHH
Q 000837 955 LMSSGNIFHVKRVLDELQENELL---PDEVTYNFLIYGFSKHKDVSSSKYYIAAMV--S--KGFN-PSNRSLRSVISCLC 1026 (1262)
Q Consensus 955 ~~~~g~~~~A~~~~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~-p~~~~~~~li~~~~ 1026 (1262)
+++.|+....+.+|+..++.|.. .=+..|..|.++|...+|+++|+++...=+ . .|-+ -...+...|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45555555555555555555421 122445556666666666666665543211 0 0100 11222233444455
Q ss_pred hcCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHh---
Q 000837 1027 EVGELGKSLELSQEMR----LKGLV-HDSIVQNAIAEGLLSRGK--------------------LQEAEHFLDQIVD--- 1078 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~--- 1078 (1262)
-.|.+++|+.....-. +.|-. .....+..|.+.|...|+ ++.|.++|.+-++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665544322 22211 123445556666655542 2334444433222
Q ss_pred -CCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH-HHHHHHcc---cCChhHHHHHHHHHHHC--
Q 000837 1079 -KDLV-PDTINYDNLIKRFCGYGRLDKAVDLLNIMLK----KGSTPNSS-SYDSIIST---CNKLDPAMDLHAEMMAR-- 1146 (1262)
Q Consensus 1079 -~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~-~~~~ll~~---~g~~~~A~~~~~~~~~~-- 1146 (1262)
.|-. .--..|..|...|.-.|+++.|+...+.=+. .|-..... .+.-+-.+ .|+++.|.+.|+.....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 1100 0124567777777778899998877654332 23222111 12222222 78889999888876542
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1147 --DLK-PSMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LG-DTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1147 --~~~-p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
|-+ ......+.|+..|.-..+++.|+..+++-+. .+ ..-..-.|.+|+.++...|..++|..+.+.-++...
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 211 1455677888999988999999998887653 11 122355667899999999999999988887766533
Q ss_pred CCC----hhhHHHHHHHhhcccc
Q 000837 1219 SPD----FSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1219 ~p~----~~~~~~~l~~l~~~~~ 1237 (1262)
+.. ..|....|.++....|
T Consensus 347 ev~D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 347 EVNDTSGELTARDNLSDLILELG 369 (639)
T ss_pred HhCCcchhhhhhhhhHHHHHHhC
Confidence 332 3334445555544333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0068 Score=68.00 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDV 293 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l 293 (1262)
......|+..+...++++.|+.+|+++.+.. |. ....++..+...++-.+|.+++++.+...+. +......-
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~----d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ----DSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----CHHHHHHH
Confidence 3555577777777888888998888888775 33 3445677777778888888888888866543 44455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 000837 294 VRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM 348 (1262)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 348 (1262)
...|.+.++++.|+.+.+++.+.. |.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666778888888888888887763 445568888888888888888888888877
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.039 Score=60.39 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH-
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP-----TQ-EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTH- 1225 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~- 1225 (1262)
..+..++..+.+.|++++|.++|++........ +. ..+...+-.+...||...|...+++... ..|.+.+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~ 233 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcH
Confidence 456677777888888888888888877632211 11 2233344456667888888888888766 34433332
Q ss_pred -HHHHHHhhccccc
Q 000837 1226 -WSLISNLRNSNDK 1238 (1262)
Q Consensus 1226 -~~~l~~l~~~~~~ 1238 (1262)
..++.+|-.+-+.
T Consensus 234 E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 234 EYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 4455555554433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00029 Score=46.93 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQELEHSG 384 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 384 (1262)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00087 Score=54.30 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.++..+.+.|++++|+..|+++++.. +-++..+..++.++...|++++|..+++++++ ..|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCC
Confidence 46778999999999999999999863 44689999999999999999999999999988 477653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0049 Score=57.39 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHH
Q 000837 179 RSCEVMALMLIRVGMLKEVELLLLAMEREGIL-LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVF 255 (1262)
Q Consensus 179 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l 255 (1262)
+++...+..+.+.|++++|...+..+.+.... +..+.++..++.++.+.|++++|+..|+.+....+.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 44555666666666666666666666654311 1113445556666666666666666666665543221 23445555
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcC
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
..++.+.+++++|...|+++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 556666666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0032 Score=54.80 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCccCHHHH
Q 000837 392 FGILIGWTCREGNLRSALVFFSEILSRGL-NPDVHTYNSLISGMFKEG--------MSKHAKEILDEMVNRGITPSLSTY 462 (1262)
Q Consensus 392 y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~~~ 462 (1262)
-...|..|...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++-+...+++.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666666777777777777777777 777777777777766542 345567778888888888888888
Q ss_pred HHHHHHHHH
Q 000837 463 RILLAGYCK 471 (1262)
Q Consensus 463 ~~li~~~~~ 471 (1262)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0058 Score=56.91 Aligned_cols=109 Identities=10% Similarity=-0.051 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc--cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHH
Q 000837 215 EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV--PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHD 292 (1262)
Q Consensus 215 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~ 292 (1262)
.++..++..+.+.|++++|...|.++.+..+. ....++..+..++.+.|+++.|...|+++....+.. .....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-PKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-CcccHHHHH
Confidence 56778888999999999999999999875432 124567778899999999999999999998866430 012345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000837 293 VVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVF 325 (1262)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 325 (1262)
+..++.+.|+.++|...++++++.. +.+..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 7778888888888888888888764 3344433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00035 Score=46.55 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000837 391 TFGILIGWTCREGNLRSALVFFSEILSRG 419 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~A~~~~~~m~~~g 419 (1262)
||+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44455555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=71.57 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=91.2
Q ss_pred CcccHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 000837 353 DVLAGNRIIHTLCSIFGSKRADLFVQELEHS--GFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSL 430 (1262)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l 430 (1262)
.....-.+++......+++.+..++.+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344555566666666666777777766654 22223346678999999999999999999888888999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc
Q 000837 431 ISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 431 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 472 (1262)
|+.+.+.|++..|.+++.+|...+...+..|+..-+.++.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888777777777766666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0096 Score=70.19 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 000837 1046 LVHDSIVQNAIAEGLLSR--G---KLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPN 1119 (1262)
Q Consensus 1046 ~~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1119 (1262)
.+.+...|...+.+.... + +.+.|..+|+++++ ..|+ ...|..+..+|.....+ .|.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~---------------~~~ 395 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQ---------------QPL 395 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhc---------------CCc
Confidence 345567777666654332 2 26677777777776 3555 44444443333221111 110
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1120 SSSYDSIISTCNKLDPAMDLHAEMMARD-LKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYS 1198 (1262)
Q Consensus 1120 ~~~~~~ll~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~ 1198 (1262)
. ..++..+.+..++..... ...++..+..++-.....|++++|...++++++. .|+...|..++..+.
T Consensus 396 ~---------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 396 D---------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYE 464 (517)
T ss_pred c---------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 0 011233444444433321 2225577888877777889999999999999985 578888999999999
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1199 LENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1199 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
..|+.++|.+.++++.+ +.|.++++ .+..|+
T Consensus 465 ~~G~~~eA~~~~~~A~~--L~P~~pt~-~~~~~~ 495 (517)
T PRK10153 465 LKGDNRLAADAYSTAFN--LRPGENTL-YWIENL 495 (517)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCCchH-HHHHhc
Confidence 99999999999999988 78998874 444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=55.30 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLV 260 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~ 260 (1262)
+..++..+...|++++|...+..+.+.. +.++.++..+...|...|++++|+..|+...+..+. +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 4455566666666666666666665543 334455566666666666666666666666554432 3345555556666
Q ss_pred hcCchhHHHHHHHHHHH
Q 000837 261 KMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 261 ~~~~~~~A~~~~~~m~~ 277 (1262)
..|+++.|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666655544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.067 Score=57.82 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=37.1
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChH
Q 000837 1027 EVGELGKSLELSQEMRLK---GLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 1102 (1262)
+.|++.+|.+.+.+.+.. ...|+...|........+.|+.++|+.--+..++ +.|. +..|..-..++...++|+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444432 1122333444444444455555555555554444 2222 222333334444455555
Q ss_pred HHHHHHHHHHh
Q 000837 1103 KAVDLLNIMLK 1113 (1262)
Q Consensus 1103 ~A~~~~~~~~~ 1113 (1262)
+|++-+++..+
T Consensus 339 ~AV~d~~~a~q 349 (486)
T KOG0550|consen 339 EAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 55555555444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.36 Score=55.55 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=63.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 000837 562 FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACC 641 (1262)
Q Consensus 562 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~ 641 (1262)
++.+...+.....+++|.+.|..-... ...+.++..... +++-+.+.+.+.+ +......+.+++.
T Consensus 799 ~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~-f~~LE~la~~Lpe-----~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 799 FRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL-FGELEVLARTLPE-----DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh-hhhHHHHHHhcCc-----ccchHHHHHHHHH
Confidence 556666667777777777776554210 123334433333 5555555554433 6666777888888
Q ss_pred ccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHH
Q 000837 642 KKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIA 691 (1262)
Q Consensus 642 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 691 (1262)
..|.-++|.+.|-+.-. + .+.+..|...+++.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhccC---c------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888887744321 1 13455666677777777766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=54.34 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN-NLGKASELMQAMQQ 1215 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 1215 (1262)
++..|..++..+...|++++|+..|+++++.. +.++.+|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999963 446889999999999999 79999999999988
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0032 Score=54.79 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCC-ccChhhHHHHHHHHHhcCc--------hhHHHHHHHHHHHcCCCCCCCCcc
Q 000837 218 SNLIQGYVGVGDVERAVLVFDQMRGRGL-VPFLSCYRVFINHLVKMKV--------THLAFRVCVDMVVMGNNLTDLEKD 288 (1262)
Q Consensus 218 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~l~~~~~--------~~~A~~~~~~m~~~g~~~~~~~~~ 288 (1262)
...|..+...+++...-.+|+.+++.|+ .|++.+||.++.+..++.- .-.++.+|++|+..+++ |+..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK---P~~e 105 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK---PNDE 105 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC---CcHH
Confidence 4556666777999999999999999998 8999999999998877542 23445555555555555 5555
Q ss_pred hHHHHHHHHH
Q 000837 289 SFHDVVRLLC 298 (1262)
Q Consensus 289 ~~~~l~~~~~ 298 (1262)
+|+.++..+.
T Consensus 106 tYnivl~~Ll 115 (120)
T PF08579_consen 106 TYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=59.21 Aligned_cols=67 Identities=6% Similarity=-0.112 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccC--hhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 213 SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF--LSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 213 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
....+..++..|...|++++|+..|++..+.+..+. ...|..+...+.+.|++++|...|.+.++..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566777777777777777777777765443322 3466666667777777777777777666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.016 Score=63.32 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHCCCC-----CCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHH
Q 000837 358 NRIIHTLCSIFGSKRADLFVQELEHSGFR-----PDEI-TFGILIGWTCREGNLRSALVFFSEILSR--GLNPD--VHTY 427 (1262)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~y 427 (1262)
..+...+.+.|++++|.++|++....... .+.. .|-..+-.+...|++..|.+.+++.... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34566677777777777777776654221 1222 2333344555678888888888887755 33322 2344
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHh
Q 000837 428 NSLISGMFKEGM---SKHAKEILDEMVN 452 (1262)
Q Consensus 428 ~~li~~~~~~g~---~~~A~~l~~~m~~ 452 (1262)
..||.++- .|+ +++|..-|+.+..
T Consensus 239 ~~l~~A~~-~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 239 EDLLEAYE-EGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHH-TT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHcccCc
Confidence 55555553 333 4555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.005 Score=69.25 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=101.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCC-----CcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH
Q 000837 316 FGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTP-----DVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEI 390 (1262)
Q Consensus 316 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 390 (1262)
.+.+-+......+++......+++++..++-+....| ...|..++|+.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445677777788888888888999999888883333 24566799999999999999999999988899999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 000837 391 TFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKE 437 (1262)
Q Consensus 391 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 437 (1262)
||+.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887666777777777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.005 Score=61.53 Aligned_cols=94 Identities=4% Similarity=-0.111 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFH 291 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 291 (1262)
...+..++..+...|++++|+..|++.......| ...+|..+...+...|++++|+..|++.++..+. ...++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~----~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF----LPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHH
Confidence 4556677777788888888888888876653332 2347777888888888888888888888766432 234455
Q ss_pred HHHHHHH-------hcCCHHHHHHHHH
Q 000837 292 DVVRLLC-------RDRKIQESRNLVR 311 (1262)
Q Consensus 292 ~l~~~~~-------~~g~~~~a~~~~~ 311 (1262)
.+...+. ..|++++|...++
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555554 4455554443333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.07 Score=56.45 Aligned_cols=80 Identities=16% Similarity=0.055 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIF---SNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYR 253 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 253 (1262)
++......+..+.+.|++++|...|+.+.... |.++.+- ..++.+|.+.+++++|+..|++..+..+.-.-..|-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 55666677777888889999999988888765 4444443 577888888899999998888887765543333343
Q ss_pred HHHHH
Q 000837 254 VFINH 258 (1262)
Q Consensus 254 ~l~~~ 258 (1262)
..+.+
T Consensus 109 ~Y~~g 113 (243)
T PRK10866 109 LYMRG 113 (243)
T ss_pred HHHHH
Confidence 33433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.01 Score=56.08 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 256 (1262)
..+....++..|...|++++|..+|+-+.... |.+..-|..|.-.+-..|++++|+..|......++. ++..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 45667777888888899999988888887765 556777888888888888899999888888877754 777788888
Q ss_pred HHHHhcCchhHHHHHHHHHHHc
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
.++.+.|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888877664
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0071 Score=65.77 Aligned_cols=137 Identities=8% Similarity=0.071 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
+|..+++...+.+..+.|..+|.+..+.+ .........+.+.. .++.+.|.++|+..++. ...+...|..++.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666432 22333333334433 34444477777777652 4446777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHH
Q 000837 1164 QEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWS 1227 (1262)
Q Consensus 1164 ~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 1227 (1262)
..|+.+.|..+|++.+.. +.++ ..+|..++.--...|+.+...++.+++.+ +.|+......
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~ 145 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLEL 145 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHH
Confidence 888888888888888864 3332 25888888888888888888888888888 4555443443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.07 Score=58.86 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHH----HHHHHCCC---CCCHHHHHHHHHHHHhcC
Q 000837 1133 LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEA----ERLL----ISMVQLGD---TPTQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A----~~l~----~~~~~~~~---~p~~~~~~~l~~~~~~~g 1201 (1262)
.++|++.|.+..+ +.|+...=.+++..+...|...+. .++- ....+.|. ..+-+.+-+++.+..-.|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 6778888887775 456544444444455555532222 2222 11222332 234566668899999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
++++|.+.+++|... +|..+..-+.+.++.
T Consensus 320 d~~ka~~a~e~~~~l--~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKL--KPPAWELESTLENIK 349 (374)
T ss_pred CHHHHHHHHHHHhhc--CCcchhHHHHHHHHH
Confidence 999999999999984 565554555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=54.22 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=107.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHH
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIV---QNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD--TINYDNLIKRFC 1096 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~ 1096 (1262)
...+.+.|++++|++.|+++...-.. +... .-.++.++.+.+++++|...+++.++. .|+ ..-+...+.+.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 33455677888888888887775221 1222 245667777888888888888888774 333 122222222222
Q ss_pred --hc---------------CC---hHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHH
Q 000837 1097 --GY---------------GR---LDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWH 1156 (1262)
Q Consensus 1097 --~~---------------g~---~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 1156 (1262)
.. .+ ..+|++.|+++++. -|+.. -..+|...+..+.+. -...-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~----------ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ----------YTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh----------hHHHHHHHHHHHHHH----HHHHHH
Confidence 11 12 23566666676664 45542 233444444443320 111223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1157 VLVHKLCQEGRTTEAERLLISMVQL--GDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1157 ~l~~~~~~~g~~~~A~~l~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
.++.-|.+.|.+.-|..-++.+++. +.+........+..+|...|..++|.++.+.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 6677799999999999999999974 1122366777888999999999999998877654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=66.72 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=62.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCc
Q 000837 185 ALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKV 264 (1262)
Q Consensus 185 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~ 264 (1262)
+..+...|++++|..++.++++.. |.++..|..+..+|...|++++|+..++++.+.++. +..+|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 445556677777777777776655 556667777777777777777777777777666543 55666667777777777
Q ss_pred hhHHHHHHHHHHHcC
Q 000837 265 THLAFRVCVDMVVMG 279 (1262)
Q Consensus 265 ~~~A~~~~~~m~~~g 279 (1262)
+++|...|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776655
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.11 Score=49.72 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRL 1101 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 1101 (1262)
..+..+.=+++...+-..+-.+ .-|+...-..|.+++...|++.+|...|++...--.--|....-.+.++....++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3334444444444333332222 34566666667777777777777777777776532233466666777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1102 DKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1102 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
..|...++++-+.+ |+ +-.|+ ..-.+++.|...|+..+|+..|+.+.+
T Consensus 141 A~a~~tLe~l~e~~--pa---------------------------~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~- 188 (251)
T COG4700 141 AAAQQTLEDLMEYN--PA---------------------------FRSPD--GHLLFARTLAAQGKYADAESAFEVAIS- 188 (251)
T ss_pred HHHHHHHHHHhhcC--Cc---------------------------cCCCC--chHHHHHHHHhcCCchhHHHHHHHHHH-
Confidence 77777777766642 22 12222 334455556666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1182 GDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1182 ~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
..|++..-..+...+.++|+.++|.
T Consensus 189 -~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 189 -YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred -hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 4555544444555555666554444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.36 Score=52.47 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=37.1
Q ss_pred CChHHHHHHH-HHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--hcCCHhhHHHHHHHHHhcC
Q 000837 628 LDQESLNLLI-QACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLC--KKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 628 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~ 695 (1262)
|...+|-.+- ..+...|++++|.+.--..+..... ..+..++++.| -.++.+.|...|++.+..+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 3444444443 3455677778877776666654322 23333444433 4667777777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.01 Score=52.29 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHH
Q 000837 217 FSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296 (1262)
Q Consensus 217 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~ 296 (1262)
+..++..+...|++++|+..|+++.+..+. +...+..+...+...+++++|...|++.....+. +..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD----NAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----chhHHHHHHHH
Confidence 456777778888888888888888776433 3466777777888888888888888887776543 33456666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 000837 297 LCRDRKIQESRNLVRKAMA 315 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~ 315 (1262)
+...|+.++|...+....+
T Consensus 78 ~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 78 YYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHhHHHHHHHHHHHHc
Confidence 6667777777776666654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.02 Score=56.76 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHH
Q 000837 285 LEKDSFHDVVRLLCR-----DRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGN 358 (1262)
Q Consensus 285 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 358 (1262)
.+..+|..++..+.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |++- -..+|+.+ ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy------- 115 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY------- 115 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC-------
Confidence 345566666666653 46667777778888888888888888888877643 3221 22222222 000
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 000837 359 RIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREG 403 (1262)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 403 (1262)
-.+.+-|++++++|+..|+-||..|+..|++.+.+.+
T Consensus 116 --------p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 116 --------PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1223456667777777777777777777777665443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.024 Score=56.27 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=56.4
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 000837 387 PDEITFGILIGWTCRE-----GNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKE----------------GMSKHAKE 445 (1262)
Q Consensus 387 p~~~ty~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~----------------g~~~~A~~ 445 (1262)
.|..+|..+|..|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444555555554432 34444444455555555555555555555543321 24577899
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHHcCC
Q 000837 446 ILDEMVNRGITPSLSTYRILLAGYCKARQ 474 (1262)
Q Consensus 446 l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 474 (1262)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999966654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.77 E-value=2.4 Score=52.27 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=99.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHhHH
Q 000837 1025 LCEVGELGKSLELSQEMRLKGL-VHD-------SIVQNAIAEGLLSRGKLQEAEHFLD--------QIVDKDLVPDTINY 1088 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~ 1088 (1262)
.+-.+++..|...++.+.+.-- .|+ +.++...+-.+-..|+.+.|+..|. .....+..++...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3456788888888888876311 111 3333333344455688999999997 44444444444433
Q ss_pred HHH--HHHHHhcCCh--HH--HHHHHHHHHhC-CCCCC--HHHHHHHHcc------cCChhHHHHHHHHHHHC---CCCC
Q 000837 1089 DNL--IKRFCGYGRL--DK--AVDLLNIMLKK-GSTPN--SSSYDSIIST------CNKLDPAMDLHAEMMAR---DLKP 1150 (1262)
Q Consensus 1089 ~~l--~~~~~~~g~~--~~--A~~~~~~~~~~-~~~p~--~~~~~~ll~~------~g~~~~A~~~~~~~~~~---~~~p 1150 (1262)
..| +..+...+.. ++ +-++++.+... ...|+ ..+...++.. .-...++...+.+..+. .+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 2223322322 22 55666554442 22332 2233333222 22233555544443321 1111
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHH-----HHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1151 ---SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TP--TQEMY-----SSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1151 ---~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p--~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
-..+++.+...+. .|+..+..+......+... .| ....| ..+.+.|...|+.++|....++...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1234555555555 7888887766665543211 22 34444 2455568888999999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.035 Score=65.56 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred CCCCChhcHHHHHHHHHhc--C---ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 000837 1010 GFNPSNRSLRSVISCLCEV--G---ELGKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP 1083 (1262)
Q Consensus 1010 g~~p~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 1083 (1262)
+...+...|...+.+.... + ..+.|..+|++.++. .|+ ...|..+..++..... ..|
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~---------------~~~ 394 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHS---------------QQP 394 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHh---------------cCC
Confidence 4456778888888865433 2 377999999999985 566 4455554443322111 111
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHH--Hcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1084 DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSI--IST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1084 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l--l~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
.. ..+...+.+...+..... ...+...|..+ ... .|++++|...++++.. +.|+...|..++
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG 460 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLG 460 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHH
Confidence 00 012223333333322221 11222222222 222 6778888888888876 668888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000837 1160 HKLCQEGRTTEAERLLISMVQLGDTPTQEMY 1190 (1262)
Q Consensus 1160 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~ 1190 (1262)
..+...|+.++|...++++... .|...+|
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 9999999999999999999884 4543343
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.14 Score=49.04 Aligned_cols=132 Identities=13% Similarity=0.228 Sum_probs=98.4
Q ss_pred CCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhH
Q 000837 1011 FNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD---TIN 1087 (1262)
Q Consensus 1011 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~ 1087 (1262)
..|+...-..|..++.+.|+..+|...|++...--+-.|....-.+.++....+++.+|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 4677777778888999999999999999998876566678888889999999999999999999988742 32 335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHcccCChhHHHHHHHHHH
Q 000837 1088 YDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSS-SYDSIISTCNKLDPAMDLHAEMM 1144 (1262)
Q Consensus 1088 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~g~~~~A~~~~~~~~ 1144 (1262)
.-.+...|...|++.+|...|+..+..-..|... .|..++...|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5566788888999999999999888852223322 34445555776666655544444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0072 Score=50.28 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1159 VHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1159 ~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
...|.+.+++++|.+.++++++.+ +.++..|...+..+...|++++|.+.+++.++ ..|++.+...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHHHH
Confidence 457889999999999999999863 55788888999999999999999999999998 5787776655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0032 Score=54.17 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=42.5
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHH
Q 000837 1028 VGELGKSLELSQEMRLKGL-VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAV 1105 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 1105 (1262)
.|++++|+.+++++.+... .++...+..++.+|.+.|++++|+.++++ .+ ..|. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666665422 11344444566666666666666666665 22 1222 233334456666666666666
Q ss_pred HHHHH
Q 000837 1106 DLLNI 1110 (1262)
Q Consensus 1106 ~~~~~ 1110 (1262)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.027 Score=56.19 Aligned_cols=100 Identities=5% Similarity=-0.147 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhh-hCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCC--CcchHHHHHHHHHhcCCHHHH
Q 000837 230 VERAVLVFDQMR-GRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDL--EKDSFHDVVRLLCRDRKIQES 306 (1262)
Q Consensus 230 ~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~~~~l~~~~~~~g~~~~a 306 (1262)
+..+...+..+. ..+-.-...+|..++..+...|++++|+..|++.+..... + ...++..+...+...|++++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHH
Confidence 334444444442 3332234567788888888889999999999998876533 2 234677778888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 307 RNLVRKAMAFGLEPSSLVFNEVAYGYC 333 (1262)
Q Consensus 307 ~~~~~~m~~~g~~~~~~~~~~li~~~~ 333 (1262)
...+++..... +.....+..+...|.
T Consensus 92 ~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 92 LEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 88888887653 334455555555555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.058 Score=54.06 Aligned_cols=97 Identities=10% Similarity=-0.156 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHH
Q 000837 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLK-SNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRV 254 (1262)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 254 (1262)
....++...+..+...|++++|...+.+..+....+. ....+..++..|.+.|++++|+..|.+..+..+. +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 3456788889999999999999999999987643221 2467889999999999999999999999887544 5667777
Q ss_pred HHHHHHhcCchhHHHHHHH
Q 000837 255 FINHLVKMKVTHLAFRVCV 273 (1262)
Q Consensus 255 l~~~l~~~~~~~~A~~~~~ 273 (1262)
+...+...|+...+..-+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHcCChHhHhhCHH
Confidence 8888888877555444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.089 Score=55.22 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=65.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1084 DTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1084 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
|...|..|..+|...|+.+.|...|.+..+. .| +++..+..++.++.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g-------------------------------~n~~~~~g~aeaL~ 201 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AG-------------------------------DNPEILLGLAEALY 201 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CC-------------------------------CCHHHHHHHHHHHH
Confidence 5788888888898889888888888887764 22 24455555555544
Q ss_pred hcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1164 QEG---RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1164 ~~g---~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
... +..++..+|++++... +.|......|+..+...|++++|...|+.|++.
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 332 3446666777776642 334555556666677777777777777777664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.061 Score=57.67 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=42.2
Q ss_pred hhhHHhhhhhhccCCCHHHHHHHHHHHhhc----CCCCC----hHHHHHHHHhcCCHHHHHHHHHHH
Q 000837 527 VEFFDNLGNGLYLDTDLDEYERKLSKIIED----SMIPN----FNSLIKMVHARGNLKAALLLVDEM 585 (1262)
Q Consensus 527 ~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~----~~~~~----~~~li~~~~~~g~~~~A~~~~~~m 585 (1262)
-..|-++++.|+..|++++|+...+.-+.- +.... +..+..++.-.|+++.|.+.|+..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 356788899999999999999877654431 22222 666777777788888888777665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.47 Score=54.18 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=67.5
Q ss_pred CHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCchHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 000837 664 ENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLE 743 (1262)
Q Consensus 664 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 743 (1262)
+..+...+...+.+...+.-|.++|..|-+. .+++......+++++|..+-++ .|+..+.++....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh----CccccccccchHHH
Confidence 4455556666666777777888888777543 3567777888888888877654 35555556666666
Q ss_pred HHHhcCCcccHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 000837 744 KLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK 799 (1262)
Q Consensus 744 ~~~~~g~~~~a~~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 799 (1262)
-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 6666666666654 344566777777777776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.7 Score=47.80 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=103.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHcc--cCChhHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 000837 1085 TINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-STPNSSSYDSIIST--CNKLDPAMDLHAEMMARDLKPSMNTW-HVLVH 1160 (1262)
Q Consensus 1085 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~ 1160 (1262)
..+|..++++..+..-.+.|..+|-++.+.| ..+++..+..++.. .|+...|..+|+.-+. --||...| +....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 4567777777777777888889998888887 56778888888877 7888888888888765 34544444 55566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1161 KLCQEGRTTEAERLLISMVQLGDTPT--QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1161 ~~~~~g~~~~A~~l~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
-+.+.++-+.|..+|+..++. +..+ ..+|..++.--.+-|+...+..+-+++.+ ..|...+.....+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~S 543 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTS 543 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHH
Confidence 677788888899999877653 3333 56777777777888888888888888877 5676654444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0094 Score=48.90 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVG-DVERAVLVFDQMRG 242 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 242 (1262)
+.+|..++.++...|++++|...+.+.++.. |.++.+|..+..+|...| ++++|+..|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444555555555555555555544443 334444444444455444 34455444444433
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.027 Score=59.98 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=69.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcC
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPS----MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP----TQEMYSSVVNRYSLEN 1201 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p----~~~~~~~l~~~~~~~g 1201 (1262)
.|++++|+..|+..++ ..|+ +..+..++.+|...|++++|...|+.+++. .| .+..+..++..+...|
T Consensus 156 ~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 156 KSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred cCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 3555566666666554 2342 467889999999999999999999999974 33 3677777888999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhH
Q 000837 1202 NLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1202 ~~~~A~~~~~~~~~~~~~p~~~~~ 1225 (1262)
++++|..+|+++++ ..|+....
T Consensus 232 ~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 232 DTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred CHHHHHHHHHHHHH--HCcCCHHH
Confidence 99999999999998 46766643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.088 Score=48.15 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=39.3
Q ss_pred HhhcCCChhHHHHHHHHHHHCCCCCC--hhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcC
Q 000837 989 GFSKHKDVSSSKYYIAAMVSKGFNPS--NRSLRSVISCLCEVGELGKSLELSQEMRLKGLV--HDSIVQNAIAEGLLSRG 1064 (1262)
Q Consensus 989 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g 1064 (1262)
++-..|+.++|+.+|++.++.|.... ...+..+...+...|++++|..++++....... .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33444555555555555554443332 122333444455555555555555555443100 01222223334455555
Q ss_pred CHHHHHHHHHHHH
Q 000837 1065 KLQEAEHFLDQIV 1077 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~ 1077 (1262)
+.++|++.+-..+
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6665555554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=2.6 Score=48.71 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHH
Q 000837 821 LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGH-CEANNLRKVRELLS 899 (1262)
Q Consensus 821 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~g~~~~a~~~~~ 899 (1262)
.+.+..++..++...|. -..-|......-.+.|..+.+.++|++-.. +++.+...|...+.-+ ...|+.+.....|+
T Consensus 61 ~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34445555555544332 222344455555556666666666666554 3333333333333222 23455555666666
Q ss_pred HHHHC-CCc-cChhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 000837 900 AMIRK-RLS-LSISSYRNLVRWMCMEGGVPWALNLKELMLGQ 939 (1262)
Q Consensus 900 ~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 939 (1262)
.++.. |.. .+...|...+..-..+++......+++.+++.
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 55554 221 23344555555555666666666666666653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.21 Score=56.89 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHH
Q 000837 219 NLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLC 298 (1262)
Q Consensus 219 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~ 298 (1262)
.-+..|.+.|.+++|..+ .++-.....|..+...-...=+++-|.+.|.+....
T Consensus 561 ~~m~q~Ieag~f~ea~~i------aclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------------- 614 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQI------ACLGVTDTDWRELAMEALEALDFETARKAYIRVRDL-------------------- 614 (1081)
T ss_pred ccchhhhhccchhhhhcc------cccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------------
Confidence 344567777777776543 222223344666665555555666666666554221
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q 000837 299 RDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMK 349 (1262)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 349 (1262)
++-+...-++++.+.|-.|+.... ...+.-.|++.+|.++|.+-|
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcC
Confidence 122223334566667766666543 344566788888888888764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=47.72 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=33.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
+...+.+.|++++|+..|+++.+..+. +...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344555666666666666666655433 55555666666666666666666666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.063 Score=58.42 Aligned_cols=144 Identities=8% Similarity=0.066 Sum_probs=97.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISC-LCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEG 1059 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 1059 (1262)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887532 2233444444443 33356677788888888876 56677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDT---INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 1129 (1262)
+...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+......++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88889999999999988865 33322 47888888778889999988888888874 4444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.085 Score=55.37 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcC---chhHHHHHHHHHHHcCCCCCCCCc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK---VTHLAFRVCVDMVVMGNNLTDLEK 287 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~---~~~~A~~~~~~m~~~g~~~~~~~~ 287 (1262)
|.+.+-|..|..+|...|+++.|...|.+..+..++ +...+..+..++.... ...++..+|++++..++. |+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~----~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA----NI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc----cH
Confidence 556666777777777777777777777766655322 5555555555555432 244555566666555432 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 288 DSFHDVVRLLCRDRKIQESRNLVRKAMAF 316 (1262)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 316 (1262)
.+...+...+...|++.+|...|+.|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=2.8 Score=48.72 Aligned_cols=156 Identities=8% Similarity=0.071 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCcccHHHHHHHHHh----------hCChh
Q 000837 302 KIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVLAGNRIIHTLCS----------IFGSK 371 (1262)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~ 371 (1262)
.+++|.++.+. .|.+..|..+...-.+.-.++.|+..|-+.+.-|.+..-..|-..+.+ -|+++
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 34555555543 688999988888888888999999999988555554333222222222 36777
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 000837 372 RADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPD----VHTYNSLISGMFKEGMSKHAKEIL 447 (1262)
Q Consensus 372 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~ 447 (1262)
+|.+++-+|-++. ..|..+.+.|++-...+++.. -|-..| ...++.+.+.+.....+++|.+.+
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776665432 234555566666555554432 111111 245666777777666777777766
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000837 448 DEMVNRGITPSLSTYRILLAGYCKARQFDEAKIMVSE 484 (1262)
Q Consensus 448 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 484 (1262)
...... .-.+.+|.+..++++-..+.+.
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHh
Confidence 554321 1234455555555544444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.45 Score=48.30 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=84.5
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 000837 982 TYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHD-----SIVQNAI 1056 (1262)
Q Consensus 982 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l 1056 (1262)
..+.++..+.-.+.+.-.+..+++.++...+.++.....|.+.-.+.|+.+.|..+|+...+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34555666666677777777777777755455666667777777777888888887776554322222 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 1057 AEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKK 1114 (1262)
Q Consensus 1057 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1114 (1262)
...|.-++++..|...+++....+- .|+...|+-..+....|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777777777777776432 24555666666666677777777777777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.39 Score=49.48 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=94.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHH
Q 000837 1022 ISCLCEVGELGKSLELSQEMRLKGLV--HDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDT----INYDNLIKRF 1095 (1262)
Q Consensus 1022 i~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~ 1095 (1262)
...+...|++++|++.|+.+...... --....-.++.++.+.|++++|...+++.++. .|+. ..+-.++.++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 33455667777777777777664211 11445566677777777777777777777663 3331 1222222221
Q ss_pred H-----------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1096 C-----------GYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ 1164 (1262)
Q Consensus 1096 ~-----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 1164 (1262)
. ..+...+|...|+.+++. -|++ .-..+|...+..+.+. -...-..++..|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S----------~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNS----------EYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTS----------TTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--CcCc----------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1 122334666677776664 3442 2344555554444320 11223456777999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHH
Q 000837 1165 EGRTTEAERLLISMVQLGDTPT----QEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1165 ~g~~~~A~~l~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|.+..|..-++.+++. .|+ ......++.+|.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999985 443 4555678888999999885543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.095 Score=47.94 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 000837 183 VMALMLIRVGMLKEVELLLLAMEREGILLK-SNEIFSNLIQGYVGVGDVERAVLVFDQMRG 242 (1262)
Q Consensus 183 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 242 (1262)
..+..+-..|+.++|..++++....|+... ...++..+..+|...|++++|+.+|++...
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444442211 123333444444444444444444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.021 Score=46.68 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 000837 189 IRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG 244 (1262)
Q Consensus 189 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 244 (1262)
.+.|++++|.+++..+.... |.+..++..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777777777665 5567777777777777777777777777777653
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1 Score=45.82 Aligned_cols=64 Identities=8% Similarity=-0.022 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhc
Q 000837 631 ESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNR 694 (1262)
Q Consensus 631 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 694 (1262)
.+-+.++..+.-.|.+.-....+.+.++...+-++.....|++.-.+.|+.+.|...|++..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4556677777778888888888888888877778888888888888899999888888876654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.08 E-value=4.9 Score=48.28 Aligned_cols=180 Identities=12% Similarity=0.093 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHHHHHHH
Q 000837 772 AYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCL--DVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISG 849 (1262)
Q Consensus 772 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 849 (1262)
....-+..+++...+.-|+.+.+.- +..++. .......+.+.+.|++++|...|-+.... .+|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3455677788888888888876553 222221 23334455667899999999888776543 2222 35777
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhH
Q 000837 850 FCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWA 929 (1262)
Q Consensus 850 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 929 (1262)
|....++.+-..+++.+.++|+. +...-..|+.+|.+.++.++..+..+..- .|.- ..-....+..+.+.+-.+.|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 78888888888999999999886 55566789999999999988777665432 1111 11245567777777878887
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 930 LNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 972 (1262)
..+-..... +.... --.+-..+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcCC
Confidence 766655443 22222 223445688999999887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.013 Score=42.77 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISN 1231 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 1231 (1262)
.+|..++..|...|++++|+++++++++ ..|++...|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhhh
Confidence 4566777888888888888888888887 57777777777664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.025 Score=47.74 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---CC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1152 MNTWHVLVHKLCQEGRTTEAERLLISMVQLG--DT---PT-QEMYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
..+++.++..|.+.|++++|+..++++++.. .. |+ ..++..++..|...|++++|++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999998531 12 22 67788999999999999999999999876
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.29 Score=47.44 Aligned_cols=114 Identities=22% Similarity=0.351 Sum_probs=75.7
Q ss_pred HHhcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHcccCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1095 FCGYGRLDKAVDLLNIMLKK--GS-TPNSSSYDSIISTCNK-LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1095 ~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~ll~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
....++.+.+.+.+.++... |. -|+... .. .......++... ......++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY-------LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHH
Confidence 35567888888888888774 22 122111 11 122233333333 2467788888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChhh
Q 000837 1171 AERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS-----GYSPDFST 1224 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~ 1224 (1262)
|..++++++.. .+-+...|..++.+|...|+..+|.++|+++.+. |+.|++.+
T Consensus 81 a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 81 ALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 99999999986 3557889999999999999999999999987553 89999884
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.52 Score=50.12 Aligned_cols=261 Identities=12% Similarity=0.066 Sum_probs=141.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHC--CCCC---ChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC---HH
Q 000837 981 VTYNFLIYGFSKHKDVSSSKYYIAAMVSK--GFNP---SNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHD---SI 1051 (1262)
Q Consensus 981 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~---~~ 1051 (1262)
.+|..+..+.++.|.+++++..----+.. .... -...|..+..++.+..++.+++.+-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 44555666666777666655432211110 0111 1233444555555555566666665544432 22221 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKD---LVP--DTINYDNLIKRFCGYGRLDKAVDLLNIMLKK----GSTPNSSS 1122 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~ 1122 (1262)
...++..++...+.++++++.|+.+.+-. -.| ....+..|...|....|+++|.-+..+..+. ++..=..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34456777777788888888888876421 111 2457788888888888888888777665542 22211112
Q ss_pred HHHHH--cc------cCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 000837 1123 YDSII--ST------CNKLDPAMDLHAEMMA----RDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQ----LGDTP 1185 (1262)
Q Consensus 1123 ~~~ll--~~------~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~----~~~~p 1185 (1262)
|..+. .. .|.+.+|.+.-++..+ .|-.| ..-..-.+++.|...|+.+.|..-++.+.. .|-+-
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 22221 11 7887788777777654 23333 234456778889999999988887777653 11110
Q ss_pred -CHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHc----CCCCChhhHHHHHHHhhcccccccc
Q 000837 1186 -TQEMYSSVVNRYSLENNL-----GKASELMQAMQQS----GYSPDFSTHWSLISNLRNSNDKDNN 1241 (1262)
Q Consensus 1186 -~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----~~~p~~~~~~~~l~~l~~~~~~~~~ 1241 (1262)
.........+.+....-. =+|+++-+++++. |.+-..--....++.+|++.|...+
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 112222222222211111 3366666666653 3333334456678899988765443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.12 Score=55.09 Aligned_cols=98 Identities=9% Similarity=-0.117 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--ccChhhHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKS---NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGL--VPFLSCYRVF 255 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 255 (1262)
|......+.+.|++++|...|..+++.. |++ +.++..++.+|...|++++|+..|..+.+.-+ .....++-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444456688888888888888765 333 46777888888888888888888888875422 1234455556
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCC
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMGN 280 (1262)
Q Consensus 256 ~~~l~~~~~~~~A~~~~~~m~~~g~ 280 (1262)
+..+...|+++.|...|++.++.-+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 6677777888888888887777653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.47 Score=48.86 Aligned_cols=175 Identities=15% Similarity=0.074 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREGI-LLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
+++.....+..+...|++.+|...|..+..... .+-.+.+...++.+|.+.|++++|+..|++..+.-|.-....+-..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 467777888888899999999999999987632 2334577778899999999999999999997765433222223322
Q ss_pred HHHHH--h-----------cCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 000837 256 INHLV--K-----------MKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS 322 (1262)
Q Consensus 256 ~~~l~--~-----------~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 322 (1262)
+.+++ + .+...+|...|++++..-+. +.-..+|...+..+.+. .-.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~------------------S~y~~~A~~~l~~l~~~---la~ 142 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN------------------SEYAEEAKKRLAELRNR---LAE 142 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT------------------STTHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC------------------chHHHHHHHHHHHHHHH---HHH
Confidence 22222 1 12234566666666655533 33344454444444321 001
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcc----cHHHHHHHHHhhCChhHH
Q 000837 323 LVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVL----AGNRIIHTLCSIFGSKRA 373 (1262)
Q Consensus 323 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~li~~~~~~g~~~~A 373 (1262)
. --.+...|.+.|++..|..-++.+ ..-|++. ..-.++.+|.+.|..+.|
T Consensus 143 ~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 H-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp H-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred H-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1 112456677777777777777777 3334433 345677777777776644
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.2 Score=47.87 Aligned_cols=91 Identities=11% Similarity=-0.060 Sum_probs=73.2
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|..+|.-+.- ..| ++.-|..|+.++-..+++++|+..+..+...+ ..|+..+.+.+.-|...|+.++|..
T Consensus 50 ~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 50 QGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred CCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 8889999998888875 455 66778888888889999999999999888764 3455566778889999999999999
Q ss_pred HHHHHHHcCCCCChhhHH
Q 000837 1209 LMQAMQQSGYSPDFSTHW 1226 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~ 1226 (1262)
.|+..++ .|......
T Consensus 127 ~f~~a~~---~~~~~~l~ 141 (165)
T PRK15331 127 CFELVNE---RTEDESLR 141 (165)
T ss_pred HHHHHHh---CcchHHHH
Confidence 9999988 45555433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.3 Score=53.35 Aligned_cols=121 Identities=8% Similarity=-0.042 Sum_probs=85.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 000837 1092 IKRFCGYGRLDKAVDLLNIMLKK-GSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1092 ~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
.+.|.+.|++..|...|++.... +..- .-+.++. +.... .-...+.+++-+|.+.+++.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~-----------~~~~ee~-~~~~~-------~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRR-----------SFDEEEQ-KKAEA-------LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccc-----------cCCHHHH-HHHHH-------HHHHHhhHHHHHHHhhhhHHH
Confidence 34577888888888888876652 1000 0000111 11111 123457788888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1171 AERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
|++..++.++.+ ++|......-+.+|...|+++.|+..|+++++ +.|++..+-.-|.-|.+
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 999999998864 77788888889999999999999999999998 78988877666655554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.3 Score=43.81 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 000837 1032 GKSLELSQEMRLKGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNI 1110 (1262)
Q Consensus 1032 ~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1110 (1262)
+-|.--|.+... +.|+ +.+||.|.--+...|+++.|.+.|+...+.+..- ..+.-.-.-++-.-|++.-|.+-+..
T Consensus 82 ~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 82 ALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHH
Confidence 333333444433 4566 7788888888889999999999999998843222 22222223344567899999888777
Q ss_pred HHhCC-CCCCHHHHHHHHcccCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 000837 1111 MLKKG-STPNSSSYDSIISTCNKLDPAMDLH-AEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-- 1186 (1262)
Q Consensus 1111 ~~~~~-~~p~~~~~~~ll~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-- 1186 (1262)
.-+.. ..|=..-|..+....-+..+|..-+ ++..+ .+..-|...+-.|.- |... -+.+++++.+- -..+
T Consensus 159 fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~ 231 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTS 231 (297)
T ss_pred HHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHH
Confidence 66652 1222222222222256666666544 33332 233444333333222 2221 12334444431 1222
Q ss_pred -----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 000837 1187 -----QEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1187 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 1218 (1262)
..+|..|++-|...|+.++|..+|+-.+..++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 56788899999999999999999999888643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=5.6 Score=44.02 Aligned_cols=93 Identities=9% Similarity=0.209 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 000837 375 LFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRG 454 (1262)
Q Consensus 375 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g 454 (1262)
++-+++.+. +.|..+|-.||..+..+|.+++..+.+++|..- ++--...|..-|.+=....+++..+.+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444442 456778999999999999999999999998754 22233566666776666778888888888888764
Q ss_pred CccCHHHHHHHHHHHHHc
Q 000837 455 ITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 455 ~~p~~~~~~~li~~~~~~ 472 (1262)
. +...|...+..-.+.
T Consensus 107 l--~ldLW~lYl~YIRr~ 122 (660)
T COG5107 107 L--NLDLWMLYLEYIRRV 122 (660)
T ss_pred c--cHhHHHHHHHHHHhh
Confidence 4 456666666544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.5 Score=48.70 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHhhhCCCccChh
Q 000837 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGI--LLKSNEIFSNLIQGYVG---VGDVERAVLVFDQMRGRGLVPFLS 250 (1262)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 250 (1262)
-++++...+.-.+....+|+.+.++++.+..... .+..+.+-....-++.+ .|+.++|+.++..+....-.++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 3455555555567777888888888887765521 12233433445555666 788888888888755555556777
Q ss_pred hHHHHHHHHHhc---------CchhHHHHHHHHHHHc
Q 000837 251 CYRVFINHLVKM---------KVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 251 ~~~~l~~~l~~~---------~~~~~A~~~~~~m~~~ 278 (1262)
+|..+++.|-.. ...++|...|.+.-+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 777777665331 2355666666655443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.25 E-value=6.1 Score=43.62 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHH
Q 000837 947 IFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC 1026 (1262)
Q Consensus 947 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 1026 (1262)
+.+..+.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-.++... +-++..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666666666666654442 25666677777777777777665543221 123466666777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000837 1027 EVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQ 1075 (1262)
Q Consensus 1027 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 1075 (1262)
+.|+..+|..++..+. +..-+..|.++|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776666521 13345556667777766655444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.71 Score=44.65 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 000837 1052 VQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP-DTINYDNLIKRFCGYGRLDKAVDLLNIMLK-----KGSTPNSSS 1122 (1262)
Q Consensus 1052 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 1122 (1262)
+...++..+...|++++|....+.+... .| +...|..+|.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 5566777788888888888888888874 33 577888888888889998888888887654 266666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=11 Score=44.96 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=73.1
Q ss_pred cCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCH--HHHHHHHHHHhhcCC
Q 000837 764 QGCNLDQMAYSH-----LIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRL--EKAVALREISLKEQP 836 (1262)
Q Consensus 764 ~g~~~d~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~ 836 (1262)
-|++.+..-|.. +|+-+...+.+..|+++-..+...-... ..+|......+.+..+. +++.+.+++-.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 455555554443 4667777888888888877764332222 56666666666655322 223333332222222
Q ss_pred CchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC-C---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 837 LLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGML-L---EDEVYNMLIQGHCEANNLRKVRELLSAMIR 903 (1262)
Q Consensus 837 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 903 (1262)
. ...+|..+...-...|+.+-|..+++.=...+.. | +..-+...+.-+.+.|+.+....++-.+.+
T Consensus 505 ~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 T-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred C-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2 3445777777777888888887776543221110 0 111233334444555666655555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.4 Score=39.82 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=81.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHH
Q 000837 1062 SRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHA 1141 (1262)
Q Consensus 1062 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~ 1141 (1262)
-.|.+++..+++.+.... .+..-+|..|--....-+=+-..+.++..=+. -| +..+|++...+.-+-
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHHHHHH
Confidence 356677777777776642 23444555554444343433333333332211 00 111677766666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 000837 1142 EMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219 (1262)
Q Consensus 1142 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 1219 (1262)
.+- .+....+.....+..+|+-++-.+++..+.+. -.++++....++.+|.+.|+..+|.+++.++.+.|++
T Consensus 81 ~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 81 KRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred Hhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 442 35566777778888999999999999988764 4788999999999999999999999999999998754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.08 Score=43.89 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=34.4
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 222 QGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
..|.+.+++++|+.+++.+...++. ++..|......+.+.|++++|...|++.++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455666666666666666665544 55556666666666666666666666666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.90 E-value=7.2 Score=42.52 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=53.3
Q ss_pred cHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 000837 1017 SLRSVISCLCEVGELG---KSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIK 1093 (1262)
Q Consensus 1017 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 1093 (1262)
++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+|+..-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 3445566666655543 455555555443 2223555555556666677788888888888764111 2233444443
Q ss_pred HHH--hcCChHHHHHHHHHHHhCCCCCCH
Q 000837 1094 RFC--GYGRLDKAVDLLNIMLKKGSTPNS 1120 (1262)
Q Consensus 1094 ~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 1120 (1262)
.+. .......|...+..++.....|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 123334566666665554444443
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.1 Score=43.35 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000837 172 KGFRHLPRSCEVMALMLIRVGMLKEVELLLLAMER 206 (1262)
Q Consensus 172 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~ 206 (1262)
|++......|...+..+..+++|+.|..-|.+..+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 56777889999999999999999999998887763
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.37 Score=46.08 Aligned_cols=97 Identities=9% Similarity=-0.137 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHH
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 257 (1262)
.+.....+.-+...|++++|+.+|.-+.-.. +-+++-|..|...|-..+++++|+..|...-..+. -|+..+-....
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agq 113 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHH
Confidence 3445566667778888888888888877655 34667777888888888888888888887654432 24444556777
Q ss_pred HHHhcCchhHHHHHHHHHHH
Q 000837 258 HLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~ 277 (1262)
++...|+.+.|...|...+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88888888888888877766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.3 Score=45.22 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCCCcccHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 000837 322 SLVFNEVAYGYCEKKDFEDLLSFFTEM-KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTC 400 (1262)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 400 (1262)
..++..++.++++.|+++....+.++. |...+...- .+. --......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 455666666677777777666666665 222111000 000 0011234566666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 000837 401 REGNLRSALVFFSEILSR-GLNPDVHTYNSLISGM 434 (1262)
Q Consensus 401 ~~g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~ 434 (1262)
.+|++..|+++.+...+. +++-+..+|..|+.-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666655544 4444455555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.9 Score=45.53 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=97.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHcc-----cCC
Q 000837 1060 LLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNS--SSYDSIIST-----CNK 1132 (1262)
Q Consensus 1060 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~-----~g~ 1132 (1262)
+...|++.+|...++++++. .+.|..+++.--.+|...|+.+.-...+++.+-+ ..||. .+|..-+.+ +|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777777777764 4446777777777777788877777777777654 22333 223222222 788
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHhHHH
Q 000837 1133 LDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP----TQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
+++|.+.-++..+ ++| |...-..+++.+.-.|++.++.+...+-.+. ... -...|=+..--+...+.++.|+
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 8888887777765 555 5566677777788888888887766654321 111 0222323333345557788888
Q ss_pred HHHHHHHHcCCCCChh
Q 000837 1208 ELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1208 ~~~~~~~~~~~~p~~~ 1223 (1262)
++|++-+-..+.-++.
T Consensus 268 eIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHhhccch
Confidence 8877544433444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=6.5 Score=40.80 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREG-ILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
++..+..-+....+.|++++|.+.|+.+..+. ..+-++.+-..++.++.+.+++++|+..+++-...-+.-.-..|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 44555555566678899999999999998664 22335677788999999999999999999987665443333446556
Q ss_pred HHHHHhcC-------c---hhHHHHHHHHHHHcC
Q 000837 256 INHLVKMK-------V---THLAFRVCVDMVVMG 279 (1262)
Q Consensus 256 ~~~l~~~~-------~---~~~A~~~~~~m~~~g 279 (1262)
+.++.... + ...|..-|++.+..-
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 66555421 2 334555556665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=7.1 Score=41.00 Aligned_cols=216 Identities=17% Similarity=0.141 Sum_probs=137.0
Q ss_pred CChhHHHHHHHHHHHCCCC-CChhcHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 994 KDVSSSKYYIAAMVSKGFN-PSNRSLRSVISCLCEVGELGKSLELSQEMRLK-GLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 994 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555543211 12345555666677777777777777766642 233345666666777777777788888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHcc---cCChhHHHHHHHHH
Q 000837 1072 FLDQIVDKDLVPDTINYDNLIK-RFCGYGRLDKAVDLLNIMLKKGSTP----NSSSYDSIIST---CNKLDPAMDLHAEM 1143 (1262)
Q Consensus 1072 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~---~g~~~~A~~~~~~~ 1143 (1262)
.+.........+ ......... .+...|+.++|...+.+.... .| ....+...... .++.+.|...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 887777643332 122222223 677788888888888887552 23 11111111111 67788888888888
Q ss_pred HHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1144 MARDLKP--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1144 ~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
.+ ..+ ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..+++...+++....
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76 333 3567788888888888899999999888874 343 556666666777777788888888888873
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.50 E-value=19 Score=45.50 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=103.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChh
Q 000837 953 FHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELG 1032 (1262)
Q Consensus 953 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 1032 (1262)
-+...+.++.+-+-+++++... .++..-| .|+. ..++++.|+.-+.++- ...|.-.++.--+.|-++
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~ 925 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYD 925 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccch
Confidence 3344556666666666666632 1221111 1121 1244555554444432 123333444445566667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000837 1033 KSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIML 1112 (1262)
Q Consensus 1033 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1112 (1262)
+|+.++..=.+. -..+|.+.++-|...+.+++|.-+|+..=+ ...-+.+|..+|+|.+|+.+..++.
T Consensus 926 ~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 926 EALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred hhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 666664422111 134555566666677778888777766532 1223566777888888888877654
Q ss_pred hCCCCCCHHH--HHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1113 KKGSTPNSSS--YDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMV 1179 (1262)
Q Consensus 1113 ~~~~~p~~~~--~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~ 1179 (1262)
.- -+... -..|... .++.-+|-+++++... . ....+..|++...+++|.++.....
T Consensus 993 ~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 993 EG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred CC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 31 11111 1222222 7777777777777653 1 3455666788888888888776654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.12 Score=43.58 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDK----D-LVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1051 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
.+++.+...|...|++++|+..|++.++. | -.|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666555431 1 0122 44566666666777777777766666543
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.7 Score=42.57 Aligned_cols=162 Identities=10% Similarity=-0.031 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHH
Q 000837 960 NIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQ 1039 (1262)
Q Consensus 960 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 1039 (1262)
.++.|.-+.++|.+- .--+..|+-....|...|.++.|-..+++.-+. .+.-++++|+++++
T Consensus 73 ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYq 134 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQ 134 (308)
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHH
Confidence 345555555555542 112344556666777777777776666665541 12334555666655
Q ss_pred HHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 000837 1040 EMRLKGLVH-----DSIVQNAIAEGLLSRGKLQEAEHFLDQIVD----KDLVPD-TINYDNLIKRFCGYGRLDKAVDLLN 1109 (1262)
Q Consensus 1040 ~~~~~g~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 1109 (1262)
.....-... -...+..+..+|.+..++++|-..|.+-.. -.-.|+ ...|...|..|....++..|.+.++
T Consensus 135 ralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 135 RALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 544321111 123444455566666777766555544321 111222 2345666666777778888888877
Q ss_pred HHHhCCC---CCCHHHHHHHHcc--cCChhHHHHH
Q 000837 1110 IMLKKGS---TPNSSSYDSIIST--CNKLDPAMDL 1139 (1262)
Q Consensus 1110 ~~~~~~~---~p~~~~~~~ll~~--~g~~~~A~~~ 1139 (1262)
.-.+.+- .-+..+..-|+.+ .|+.+++.++
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHhccCCHHHHHHH
Confidence 7554321 1223344444444 5555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.41 E-value=10 Score=41.99 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 000837 912 SYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFS 991 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 991 (1262)
+.+.-+.-+...|....|.++..+.. -|+-..|...+.+|+..++|++-.++... +-+++.|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445666677888888887766652 36788899999999999999887665432 124588899999999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEM 1041 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 1041 (1262)
+.|...+|..+..+ ..+..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888776 22245677889999999998764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.98 Score=50.80 Aligned_cols=68 Identities=16% Similarity=-0.010 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccCh--hhHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL--SCYRVFINHLVKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~l~~~~~~~~A~~~~~~m~~~ 278 (1262)
|+.+..++.+..+|...|++++|+..|++..+.++.... .+|..+..+|.+.|++++|+..|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666666666666666666666666555433111 34566666666666666666666666553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.57 Score=48.74 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQL-GDTP-TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.+..+.+|+..++..|++++|...|..+.+. +-.| -+..+.-|+......|+.++|...|+.+.+. -|+.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 3456788999999999999999999999873 1112 2688888999999999999999999999885 55544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.98 Score=53.17 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc----cCChhHHHHHHHHHHHC--CCCC-CHHHHHHHHHHHHhcCCHHH
Q 000837 1098 YGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST----CNKLDPAMDLHAEMMAR--DLKP-SMNTWHVLVHKLCQEGRTTE 1170 (1262)
Q Consensus 1098 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 1170 (1262)
....+.|.++++.+.+. .|+...|...-.. .|++++|++.|++.... ..+. ....+.-+++.+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44566777777777764 5665554443333 77777777777765531 1111 33456677778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH-------hHHHHHHHHHHH
Q 000837 1171 AERLLISMVQLGDTPTQEMYS-SVVNRYSLENNL-------GKASELMQAMQQ 1215 (1262)
Q Consensus 1171 A~~l~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 1215 (1262)
|.+.+.++.+.+ .=+..+|. ..+-.+...|+. ++|.++++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888742 11222222 233335566777 777777765543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.6 Score=41.83 Aligned_cols=68 Identities=15% Similarity=-0.075 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 000837 211 LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMG 279 (1262)
Q Consensus 211 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g 279 (1262)
|+-+.+||.|+--+...|+++.|.+.|+...+.++.-+.. ...-..++.--|+++.|.+-+.+.-..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-HhccceeeeecCchHhhHHHHHHHHhcC
Confidence 5556777777777777777777777777776665442211 1112223334466666666555554444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=8.1 Score=40.56 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-H
Q 000837 912 SYRNLVRWMCMEGGVPWALNLKELMLGQ-NKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIY-G 989 (1262)
Q Consensus 912 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-~ 989 (1262)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444455444444444331 112233334444444444555555555555554432221 111111111 3
Q ss_pred hhcCCChhHHHHHHHHHHHCCCCC----ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 000837 990 FSKHKDVSSSKYYIAAMVSKGFNP----SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVH-DSIVQNAIAEGLLSRG 1064 (1262)
Q Consensus 990 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g 1064 (1262)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcc
Confidence 4455555555555555533 111 1111111222233444444444444444443 111 2334444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 000837 1065 KLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~~ 1078 (1262)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.29 E-value=17 Score=44.07 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=31.9
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN-----FNSLIKMVHARGNLKAALLLVDEMVR 587 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 587 (1262)
....+..++++..+.-|..+-+. .+..++ .....+-+.+.|++++|...|-+.+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 34456666677777777665543 222222 23334455667888888877766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.1 Score=42.05 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHH
Q 000837 177 LPRSCEVMALMLIRVGMLKEVELLLLAMEREG-ILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 177 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
++..+..-+....+.|+|++|...|+.+..+- ..+-.+.+-..|+.+|.+.+++++|+..+++.++..+.---.-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 56667777788889999999999999998763 12235577789999999999999999999999988776444566666
Q ss_pred HHHHHhcCc
Q 000837 256 INHLVKMKV 264 (1262)
Q Consensus 256 ~~~l~~~~~ 264 (1262)
+.+|.....
T Consensus 89 ~~gL~~~~~ 97 (142)
T PF13512_consen 89 MRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHH
Confidence 666655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.19 Score=56.26 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT-Q---EMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
++..|+.++.+|.+.|++++|+..++++++. .|+ . .+|+.++..|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677788888888888888888888888774 454 2 34777888888888888888888887774
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.25 E-value=14 Score=43.08 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=95.4
Q ss_pred HHhhhhhhccCCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 000837 530 FDNLGNGLYLDTDLDEYERKLSKIIEDSMIPN--FNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCAS 607 (1262)
Q Consensus 530 ~~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 607 (1262)
+..++.---...+.+.+...+..++..-|.-. |-..+.--.+.|..+.+.++|++-+.. +..++..|...+..++..
T Consensus 48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~ 126 (577)
T KOG1258|consen 48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN 126 (577)
T ss_pred hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc
Confidence 33444444444445556666666665554433 666666678899999999999998874 667888898888888887
Q ss_pred CCchHHHHHHHHHhhhhcC-CC-ChHHHHHHHHHHHccCChHHHHHHHHHHhhc
Q 000837 608 RSHIKACTGLLEKMPKLAN-KL-DQESLNLLIQACCKKGLVRDGKKIFDGMLQR 659 (1262)
Q Consensus 608 ~~~~~~a~~l~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 659 (1262)
..+.+...++|+.....-. .. ....|...|.--...+++.....++++.++.
T Consensus 127 ~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 127 NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 7778888889988876433 33 6777888888888888999999999999875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=8.2 Score=40.10 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=110.3
Q ss_pred CChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHH
Q 000837 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGL--VHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKD-LVPDTINYD 1089 (1262)
Q Consensus 1013 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~ 1089 (1262)
|-...|+.-+. -.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+..+++....- -.|| .-|.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 33444544433 4467888888888888876421 1225666677778888888888888888887642 2222 2344
Q ss_pred HHHHHHHh-------cCChHH---HHHHHHHHHhCCCCCCHHHHHHHHcccCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000837 1090 NLIKRFCG-------YGRLDK---AVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLV 1159 (1262)
Q Consensus 1090 ~l~~~~~~-------~g~~~~---A~~~~~~~~~~~~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 1159 (1262)
..+.+++. ..|..- |..-|+++++. -|++. =..+|...+..+.+. -...=..++
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~----------Ya~dA~~~i~~~~d~----LA~~Em~Ia 174 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR----------YAPDAKARIVKLNDA----LAGHEMAIA 174 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc----------chhhHHHHHHHHHHH----HHHHHHHHH
Confidence 44444432 122222 33333333332 33321 011222222222210 011224566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1160 HKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1160 ~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
+-|.+.|.+..|..-++.|++. ++.+ ...+..+..+|...|-.++|.+.-+-+.. -.|+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~--N~p~s~ 238 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA--NYPDSQ 238 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCCc
Confidence 7789999999999999999986 4443 34455677889999999999997776655 355543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.8 Score=43.95 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhHHHHHHHhhcCCChhHHHHHHHHHHH----CCCCCChhcH-
Q 000837 949 NILVFHLMSSGNIFHVKRVLDELQENEL-----LPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVS----KGFNPSNRSL- 1018 (1262)
Q Consensus 949 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~- 1018 (1262)
-+|..+....+.++++++.|+...+.-. ...-..+..|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455666667777888887777654311 11235567777778888888888776666554 1222222222
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000837 1019 ----RSVISCLCEVGELGKSLELSQEMRL----KGLVHD-SIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1019 ----~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
..|.-++...|++.+|.+..++..+ .|-.+- ......+.++|...|+.+.|..-|+++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234467778888888888887655 332221 3344567788888888888877777765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.10 E-value=17 Score=45.74 Aligned_cols=20 Identities=0% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHc
Q 000837 329 AYGYCEKKDFEDLLSFFTEM 348 (1262)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~~ 348 (1262)
+.-++..+++.+|.++.++-
T Consensus 684 vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455556666665555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.7 Score=39.36 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCChHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhCCCchHHHH
Q 000837 539 LDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSV---FSALVKGLCASRSHIKACT 615 (1262)
Q Consensus 539 ~~~~~~~a~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~~a~ 615 (1262)
..|..++..+++.+.....+...+|..|.-....-+-+-..+.++..-+ --|... .-..+.++...+.
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK------ 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-------
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc------
Confidence 3566666777776666665555555555544433333333333333321 111111 1223333333333
Q ss_pred HHHHHhhhhcCCCChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcC
Q 000837 616 GLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRK 695 (1262)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 695 (1262)
+....+.-++.+.+.|+-+.-.++...+... -.+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555555555555432 23455555555666666666666666666555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.99 E-value=21 Score=44.10 Aligned_cols=190 Identities=17% Similarity=0.101 Sum_probs=87.5
Q ss_pred hcCCChhHHHHHHHHHHHCC-CCCC-----hhcHHHHHH--HHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKG-FNPS-----NRSLRSVIS--CLCEVGELGKSLELSQ--------EMRLKGLVHDSIVQN 1054 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~--~~~~~g~~~~A~~~~~--------~~~~~g~~~~~~~~~ 1054 (1262)
+-.+++..|....+.|.+.- -.|+ ...+..++. .+...|+++.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 34567777777777777531 1111 112222222 3344678888888886 333444444433333
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHHHHhC-CCCC--CHhHHHHH-HHHHHhc--CChHHHHHHHHHHHhCC--CCCCH
Q 000837 1055 A--IAEGLLSRGK--LQE--AEHFLDQIVDK-DLVP--DTINYDNL-IKRFCGY--GRLDKAVDLLNIMLKKG--STPNS 1120 (1262)
Q Consensus 1055 ~--l~~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~~--~~p~~ 1120 (1262)
. ++..+...+. .++ +.++++.+... .-.| +..++..+ +.++... -...++...+.+.++.- -..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 1222222222 222 55666655431 1122 23333333 3333211 12224444443332210 11111
Q ss_pred HH---HHHHHcc---cCChhHHHHHHHHHHHCC-CCC--CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1121 SS---YDSIIST---CNKLDPAMDLHAEMMARD-LKP--SMNTW-----HVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1121 ~~---~~~ll~~---~g~~~~A~~~~~~~~~~~-~~p--~~~~~-----~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
.. ...++.. .|+..+..+......... -.| ....| ..+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 1222222 588777766666544311 112 33445 2344457788999999998887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.73 Score=41.42 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=68.2
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 1205 (1262)
.|+++.|++.|.+.+. +.| .+..|+.-+.++.-+|+.++|++=++++++..-.-+ ...|..-+-.|...|+.+.
T Consensus 56 ~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 56 AGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred ccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 6778888888888775 555 778899999999999999999999999998522222 3455566777999999999
Q ss_pred HHHHHHHHHHcC
Q 000837 1206 ASELMQAMQQSG 1217 (1262)
Q Consensus 1206 A~~~~~~~~~~~ 1217 (1262)
|..-|+..-+-|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 999998887765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.19 Score=36.51 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVN 1195 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~ 1195 (1262)
.+|..++..|.+.|++++|+++++++++. .+.|+..|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhhh
Confidence 46889999999999999999999999996 3556888777653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.29 Score=51.79 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=75.7
Q ss_pred HHHHHhhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 000837 162 EIFKWASKLYKGFRH-LPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQM 240 (1262)
Q Consensus 162 ~~f~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 240 (1262)
+||.|+..+..-|.. -..++..++..+...++++.+.+.+.+++... |-+...|..++.+|...|+...|+..|+++
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 489999877433321 24467788888999999999999999999876 557789999999999999999999999988
Q ss_pred hh-----CCCccChhhHHHHHHH
Q 000837 241 RG-----RGLVPFLSCYRVFINH 258 (1262)
Q Consensus 241 ~~-----~~~~p~~~~~~~l~~~ 258 (1262)
.+ .|+.|...+.......
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHH
Confidence 64 6888877766655554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.3 Score=49.96 Aligned_cols=141 Identities=15% Similarity=0.119 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHH-hCCCCCC-HhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHH---HHHHHcc-
Q 000837 1065 KLQEAEHFLDQIV-DKDLVPD-TINYDNLIKRFCGY---------GRLDKAVDLLNIMLKKGSTPNSSS---YDSIIST- 1129 (1262)
Q Consensus 1065 ~~~~A~~~~~~m~-~~~~~p~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~- 1129 (1262)
..+.|+.+|.+.. ...+.|+ ...|..+..++... ....+|.++.++..+.+ |+... ....+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 4678888999988 2225666 66777766555321 23345566666666642 32222 2222222
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPT---QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~ 1205 (1262)
.++++.|...|++... ++|| +.+|...+..+.-.|+.++|.+.+++..+. .|. ..+....++.|+.. -.++
T Consensus 351 ~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred hcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhh
Confidence 6668888888888776 6774 567777777777788888888888887764 443 23333333344444 3466
Q ss_pred HHHHHHH
Q 000837 1206 ASELMQA 1212 (1262)
Q Consensus 1206 A~~~~~~ 1212 (1262)
|+.+|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 6666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.85 Score=42.26 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 000837 389 EITFGILIGWTCREGNLRSALVFFSEIL---------------SRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNR 453 (1262)
Q Consensus 389 ~~ty~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 453 (1262)
..++.++|.++++.|+++....+++..- .....|+..+..+++.+|+.+|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554331 2345688888899999999999999999988887775
Q ss_pred -CCccCHHHHHHHHHH
Q 000837 454 -GITPSLSTYRILLAG 468 (1262)
Q Consensus 454 -g~~p~~~~~~~li~~ 468 (1262)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 666677888888764
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.35 E-value=14 Score=40.18 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=9.8
Q ss_pred HHHcCCHHHHHHHHHH
Q 000837 469 YCKARQFDEAKIMVSE 484 (1262)
Q Consensus 469 ~~~~g~~~~A~~l~~~ 484 (1262)
..+.+++++|.+.++-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455667777666654
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1 Score=40.60 Aligned_cols=99 Identities=15% Similarity=-0.004 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCccCh--hhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGR-GLVPFL--SCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~~l~~ 257 (1262)
...-+..+++.|+++.|.+.|.+.+..- |..+.+||.-..+|.-+|+.++|++-+++..+. |.+.-. .+|-.-..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3445566777777777777777766554 556677777777777777777777777776653 333111 22333333
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
.|...|+-+.|..-|+..-+.|.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 455566666776666666666543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.9 Score=41.13 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=63.1
Q ss_pred cCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP--SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKAS 1207 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 1207 (1262)
+|++++|...++......-.. ...+--.|+......|.+|+|+++++...+.++ .+.....-++++...|+.++|+
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHH
Confidence 788888888888776411111 122334677788999999999999998765322 2334556799999999999999
Q ss_pred HHHHHHHHcC
Q 000837 1208 ELMQAMQQSG 1217 (1262)
Q Consensus 1208 ~~~~~~~~~~ 1217 (1262)
..|++.++.+
T Consensus 180 ~ay~kAl~~~ 189 (207)
T COG2976 180 AAYEKALESD 189 (207)
T ss_pred HHHHHHHHcc
Confidence 9999999974
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.85 Score=47.52 Aligned_cols=101 Identities=17% Similarity=0.045 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCc-c-ChhhHHHHHH
Q 000837 181 CEVMALMLIRVGMLKEVELLLLAMEREGIL-LKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLV-P-FLSCYRVFIN 257 (1262)
Q Consensus 181 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~l~~ 257 (1262)
.+..+--+.++|+|..|...|...++.... .-.+.++.+|+.++...|++++|..+|..+.+.-+. | .+.+.-.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444556678889999999999999987521 224678899999999999999999999998775332 2 3478888999
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCC
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNN 281 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~ 281 (1262)
++.+.|+.++|...|++..+.-+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999987643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.8 Score=40.58 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=58.3
Q ss_pred cCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCC---
Q 000837 1130 CNKLDPAMDLHAEMMAR-DLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPT-QEMYSSVVNRYSLENN--- 1202 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~--- 1202 (1262)
.|++++|++.|+.+... -..| ....--.++.+|.+.|++++|...+++.+++.. .|+ ...+...+-++.....
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 56677777777766652 1111 345667888889999999999999999888522 111 3444444444555544
Q ss_pred ------------HhHHHHHHHHHHHcCCCCChh
Q 000837 1203 ------------LGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1203 ------------~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
..+|...|+.+++. -|+.+
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S~ 133 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRR--YPNSE 133 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHH--CcCCh
Confidence 66777777777773 55543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.72 E-value=4.9 Score=42.68 Aligned_cols=151 Identities=13% Similarity=-0.055 Sum_probs=103.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCCCCcccHHHH----HHHHHhhCCh
Q 000837 297 LCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRI----IHTLCSIFGS 370 (1262)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l----i~~~~~~g~~ 370 (1262)
+...|++.+|-..++++++. +|.|...+...=.+|...|+.+.-...++++ ...||...|.-+ .-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44578888888888888865 4778888888888888899988888888888 457777655433 3444567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 000837 371 KRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR---GLNPDVHTYNSLISGMFKEGMSKHAKEIL 447 (1262)
Q Consensus 371 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~~A~~l~ 447 (1262)
++|++.-++..+.+ +-|...-.++...+--.|+..++.++..+-... +--.-.+.|--..-.+...+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99988888877765 456777778888888888888888876653321 10001122222222344556777777777
Q ss_pred HH
Q 000837 448 DE 449 (1262)
Q Consensus 448 ~~ 449 (1262)
++
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 53
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=5.7 Score=45.04 Aligned_cols=82 Identities=10% Similarity=0.043 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhhCCCccChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 000837 230 VERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNL 309 (1262)
Q Consensus 230 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (1262)
..+|++.-++..+.+.. |+.+...+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+.
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444455555554433 4455555555445555555555555555554422 223333333444445555555555
Q ss_pred HHHHHHC
Q 000837 310 VRKAMAF 316 (1262)
Q Consensus 310 ~~~m~~~ 316 (1262)
+++..+.
T Consensus 395 i~~alrL 401 (458)
T PRK11906 395 IDKSLQL 401 (458)
T ss_pred HHHHhcc
Confidence 5554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.55 E-value=13 Score=37.66 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhC--CCCCCHHHHHHHHcc------cCChhHHHHHHHHHHHC
Q 000837 1099 GRLDKAVDLLNIMLKK--GSTPNSSSYDSIIST------CNKLDPAMDLHAEMMAR 1146 (1262)
Q Consensus 1099 g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~------~g~~~~A~~~~~~~~~~ 1146 (1262)
.+.++|+..|+..-+. |-+.+...--+++.. .+++.+|+++|+++...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555442 223333323333332 66677777777776653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.4 Score=48.53 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhC-----CCc---------cChhhHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCCC
Q 000837 220 LIQGYVGVGDVERAVLVFDQMRGR-----GLV---------PFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDL 285 (1262)
Q Consensus 220 li~~~~~~g~~~~A~~~~~~m~~~-----~~~---------p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~~g~~~~~~ 285 (1262)
-+..|.+.|++..|...|++.... +.. .-..+++-+.-++.|.+++..|+...++.++.+. +
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~ 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP----N 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC----C
Confidence 344677888888888888774321 111 1234677777788888888888888888888775 4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHc
Q 000837 286 EKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDL-LSFFTEM 348 (1262)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 348 (1262)
|+...-.-..+|...|+++.|+..|+++.+.. |.|..+-+-++..-.+..+..+. .++|..|
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888764 34455555566555555544433 5677777
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.22 E-value=7.1 Score=37.46 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=45.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMN---TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKA 1206 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 1206 (1262)
.|+...|+..|.++-...-.|... .--.-+..+...|-+++....++-+..-+-+-..+.-..|+-+-.+.|++.+|
T Consensus 107 kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A 186 (221)
T COG4649 107 KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA 186 (221)
T ss_pred cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH
Confidence 455555555555554422222111 11122233455566666555555544333223344555666666666666666
Q ss_pred HHHHHHHHHcCCCCC
Q 000837 1207 SELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1207 ~~~~~~~~~~~~~p~ 1221 (1262)
.+.|+.+.+....|.
T Consensus 187 ~~~F~qia~Da~apr 201 (221)
T COG4649 187 KSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHHccccCcH
Confidence 666666655444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.10 E-value=17 Score=39.60 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHcc-cCC----hh
Q 000837 1069 AEHFLDQIVDKDLVPDTINYDNLIKRFCG--Y----GRLDKAVDLLNIMLKKGS---TPNSSSYDSIIST-CNK----LD 1134 (1262)
Q Consensus 1069 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~-~g~----~~ 1134 (1262)
.+.+++.|.+.|..-+..+|-+....... . ....+|.++|+.|.+... .++...+..++.. .++ .+
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~ 160 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAE 160 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHH
Confidence 34455555555555444443332211111 1 223456666666666421 3455556666555 333 34
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1135 PAMDLHAEMMARDLKPSMN--TWHVLVHKLCQEGR--TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1135 ~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
....+|+.+.+.|+..+.. ....++..+..... ...+..+++.+.+.|+++....|..+|-.....+..++..+-+
T Consensus 161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i 240 (297)
T PF13170_consen 161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEI 240 (297)
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHH
Confidence 4455566666556655322 12222211111111 3356667777777776666655655543333333332433333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.02 E-value=5.2 Score=45.39 Aligned_cols=57 Identities=11% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc-CCCCC---cccHHHHHHHHHhhCChhHHHHHHHHHHH
Q 000837 326 NEVAYGYCEKKDFEDLLSFFTEM-KCTPD---VLAGNRIIHTLCSIFGSKRADLFVQELEH 382 (1262)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 382 (1262)
-.+..++-+.|+.++|++.|++| ...|. ......||.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444445556666666666666 22221 22344566666666666666666665543
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.82 E-value=3.5 Score=48.60 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=67.6
Q ss_pred CChhHHHHHHhcccccchhcccchhhHHHHHHHHHHhhcccCCCCCCHHH-----HHHHHHHHHH----cCChHHHHHHH
Q 000837 131 LKPENVLEILVGFWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRS-----CEVMALMLIR----VGMLKEVELLL 201 (1262)
Q Consensus 131 l~p~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~-----~~~l~~~l~~----~~~~~~a~~~l 201 (1262)
+=|..+++++.-+.|...+ +..++....+... ++.+...-+ |+.++..+.. ....+.|.+++
T Consensus 186 lLPp~~~kll~~vGF~gdR--------~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGFSGDR--------ELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred hCCHHHHHHHhhcCcCCcH--------HHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 4455566666555554432 3456666666543 444433222 3333332222 34456677777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--C-ccChhhHHHHHHHHHhcCchhHHHHHHHHHHH
Q 000837 202 LAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG--L-VPFLSCYRVFINHLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~ 277 (1262)
..+.+.- |.+.-....-.+.+...|++++|++.|++..... . +....++--+.-.++-..++++|...|..+.+
T Consensus 257 ~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 257 EEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 7776654 4333333355566666777777777777654211 0 11122233333334444555555555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.36 Score=32.57 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.+|..++..|...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.32 Score=32.76 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 000837 1188 EMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1188 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
..|..++..|...|++++|++.+++.++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777766 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=9 Score=36.81 Aligned_cols=134 Identities=12% Similarity=0.036 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHH-
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFI- 256 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 256 (1262)
-++|.. +--|+..+..++|...|..+.+.|...=..-..........+.|+-..|+..|+++-.....|...-=..-+
T Consensus 59 gd~fla-AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLA-ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHH-HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344433 445778888899999999988877432111222344555677889999999999988776666443111222
Q ss_pred --HHHHhcCchhHHHHHHHHHHHcCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 257 --NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMA 315 (1262)
Q Consensus 257 --~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 315 (1262)
-.|+..|.|++.....+.+-..+.. ...+.-..|.-+-.+.|++..|.+.|.++..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~---mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNP---MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCCh---hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345667777666655544332221 2233344444445555666666665555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.49 Score=49.80 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=81.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|++.|.+.+. ..| |+.++..-+.+|.+..++..|+.=...++.++ ..=...|..-+.+-...|+..+|.+
T Consensus 110 QgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred ccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555543 566 77788888888888888888888777777542 1124556666777777888899999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhccccccc----------c-ccchhhhhhhhcCCCcccc
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLRNSNDKDN----------N-RNSQGFLSRLLSGSGFIKF 1260 (1262)
Q Consensus 1209 ~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~ 1260 (1262)
-++.+++ ++|+.-..-.-++.+.+-..++- + ..-+..|+..-+|.||++|
T Consensus 187 D~E~vL~--LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~ 247 (536)
T KOG4648|consen 187 DCETVLA--LEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKK 247 (536)
T ss_pred hHHHHHh--hCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhh
Confidence 9999888 78876655555554443221111 1 1223344445578888876
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.22 E-value=18 Score=38.39 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHcccCChhH
Q 000837 1059 GLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSS---YDSIISTCNKLDP 1135 (1262)
Q Consensus 1059 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~g~~~~ 1135 (1262)
.....|+..+|...|...++.... +...--.|+.+|...|+.+.|..++..+-..--...... ...++.......+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777764222 345556667777777777777777766543211111111 0111111333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 000837 1136 AMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGD-TPTQEMYSSVVNRYSLENNLGKASELM 1210 (1262)
Q Consensus 1136 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 1210 (1262)
...+-.+.. -.| |...-..++..+...|+.++|.+.+-.++..+. .-|...-..++..+...|..+.+...+
T Consensus 222 ~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 222 IQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 334434443 356 677778888889999999999888877775422 223455556666666666444443333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.86 E-value=23 Score=37.71 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=82.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCChh
Q 000837 848 SGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVP 927 (1262)
Q Consensus 848 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 927 (1262)
......|+..+|...|+........ +......+..+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777888877777764332 234455667777788888888888776544321111222222344444555555
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHhhcCC
Q 000837 928 WALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENEL-LPDEVTYNFLIYGFSKHK 994 (1262)
Q Consensus 928 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g 994 (1262)
+...+-...... +.|...-..+...+...|+.++|++.+-.+.+++. --|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 544444444432 22555566677777788888888887776665532 123344455555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.86 E-value=13 Score=35.48 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCccChhhHHHHHHHHHh
Q 000837 182 EVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVK 261 (1262)
Q Consensus 182 ~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~l~~ 261 (1262)
..++..+.+.+....+..+++.+...+. .++..++.++..|++. +..+.++.+.. ..+......+++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666677777777777776652 3556777777777654 23444444442 0122223334555555
Q ss_pred cCchhHHHHHHHHH
Q 000837 262 MKVTHLAFRVCVDM 275 (1262)
Q Consensus 262 ~~~~~~A~~~~~~m 275 (1262)
.+.++++..+|.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.79 E-value=7.3 Score=44.25 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcccCC
Q 000837 1054 NAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDT-INYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNK 1132 (1262)
Q Consensus 1054 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~g~ 1132 (1262)
..++.--.+..+...-++.-.++++ +.||. ..|..|.. -......+|.+++++..+.|-. ..-........|.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA--SLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH--hhchhhhhhcccc
Confidence 3455556677788888888888887 56774 34433322 2345578888888887764310 0000000000111
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1133 LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDT-PTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
.++....+..+|-..+-..++.++.+.|+.+||++.+..+.+.... .+..+...|+..+...+.+.++..++.
T Consensus 246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1111222223343444456777777778888888888877753211 134556677777788888888877777
Q ss_pred HHH
Q 000837 1212 AMQ 1214 (1262)
Q Consensus 1212 ~~~ 1214 (1262)
+--
T Consensus 320 kYd 322 (539)
T PF04184_consen 320 KYD 322 (539)
T ss_pred Hhc
Confidence 753
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.72 E-value=3.8 Score=47.50 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=13.1
Q ss_pred hhcHHhHHHHHHhcCCHHHHHHHHHHH
Q 000837 805 LDVSVSLIPQLFRTGRLEKAVALREIS 831 (1262)
Q Consensus 805 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 831 (1262)
...|..|.+...+.|+++-|++.|.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344444555555555555555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.27 Score=33.24 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=13.4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 000837 1148 LKP-SMNTWHVLVHKLCQEGRTTEAE 1172 (1262)
Q Consensus 1148 ~~p-~~~~~~~l~~~~~~~g~~~~A~ 1172 (1262)
+.| ++..|+.++..|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344 4555555555555555555553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.43 E-value=52 Score=40.45 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCC-CCCChhcHHHHHHHHHh---
Q 000837 952 VFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKG-FNPSNRSLRSVISCLCE--- 1027 (1262)
Q Consensus 952 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~--- 1027 (1262)
...+.-.|.++.|++.+-+ ..+...|.+.+.+.+.-|.-.+-.+... ..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667888888887766 1122334444444444332222111111 2233210 11222556667777765
Q ss_pred cCChhHHHHHHHHHHHc
Q 000837 1028 VGELGKSLELSQEMRLK 1044 (1262)
Q Consensus 1028 ~g~~~~A~~~~~~~~~~ 1044 (1262)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35667777777665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.37 E-value=6.1 Score=45.86 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=84.8
Q ss_pred HhcCCHHHHHHHHH--HHhhcCCCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 000837 816 FRTGRLEKAVALRE--ISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRK 893 (1262)
Q Consensus 816 ~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~ 893 (1262)
.-.++++++.++.. .+.. ..+....+.++..+.+.|..+.|+.+..+ +.+ -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHH
Confidence 34556666554443 1111 11233356677777777777777765333 211 1222346677777
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 894 VRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQE 973 (1262)
Q Consensus 894 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 973 (1262)
|.++.++ ..+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766543 23566777777777777888887777776544 56677777777887776666666665
Q ss_pred CCCCCCHhhHHHHHHHhhcCCChhHHHHHHHH
Q 000837 974 NELLPDEVTYNFLIYGFSKHKDVSSSKYYIAA 1005 (1262)
Q Consensus 974 ~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~ 1005 (1262)
.| -++....++...|++++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 245555566666777776665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.35 E-value=53 Score=40.39 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 000837 361 IHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR---GLNPDVHTYNSLISGMFKE 437 (1262)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~ 437 (1262)
...+.-.|.++.|.+++-+ ..+...|.+.+...+..|.-.+-.+... ..+... +..| .-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~--ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP--LNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC--cCHHHHHHHHHHH
Confidence 3444567999999998877 2234567777776666543322222211 333222 1222 5678888888753
Q ss_pred ---CChHHHHHHHHHHHhC
Q 000837 438 ---GMSKHAKEILDEMVNR 453 (1262)
Q Consensus 438 ---g~~~~A~~l~~~m~~~ 453 (1262)
.+..+|.+.|--+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 5677777777666654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.34 E-value=17 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 000837 290 FHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEK 335 (1262)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 335 (1262)
...++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455555555566666666666666655 35556666666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.20 E-value=2 Score=44.32 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHHcCCH
Q 000837 441 KHAKEILDEMVNRGITPSLSTYRILLAGYCKARQF 475 (1262)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 475 (1262)
+=+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 45789999999999999999999999999777653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.20 E-value=23 Score=36.02 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=50.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000837 992 KHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEH 1071 (1262)
Q Consensus 992 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 1071 (1262)
+.+++++|.+.++..++ .|...|++..|-....++-+. ++.+. .+++.|+.
T Consensus 85 kk~~~~eAv~cL~~aie---------------Iyt~~Grf~~aAk~~~~iaEi-yEsdl-------------~d~ekaI~ 135 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIE---------------IYTDMGRFTMAAKHHIEIAEI-YESDL-------------QDFEKAIA 135 (288)
T ss_pred hccChHHHHHHHHHHHH---------------HHHhhhHHHHHHhhhhhHHHH-HhhhH-------------HHHHHHHH
Confidence 44477777666665544 466677776666655544332 11111 34455555
Q ss_pred HHHHHHh--CCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCC
Q 000837 1072 FLDQIVD--KDLVPDTINYDNL---IKRFCGYGRLDKAVDLLNIMLKKGSTP 1118 (1262)
Q Consensus 1072 ~~~~m~~--~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p 1118 (1262)
.|++.-+ +|-..+...-..+ ...-...+++.+|+++|++.....+..
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555432 1111122222222 222345678888888888877754433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.7 Score=44.81 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcH
Q 000837 944 NLIIFNILVFHLMSS-----GNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSL 1018 (1262)
Q Consensus 944 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 1018 (1262)
|-.+|-+++..+... ++.+-....++.|.+.|+.-|..+|+.|++.+-+-. +.|....-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvfQ 129 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVFQ 129 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHHH
Confidence 455566666555432 445555555667777777777777777776654322 12211111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 000837 1019 RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKL 1066 (1262)
Q Consensus 1019 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 1066 (1262)
... --|- .+-+=++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 130 ~~F-~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVF-LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHH-hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 000 0111 12344788899999999999999999999998877653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.66 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+|..|+.+|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999988654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.58 E-value=3.9 Score=40.08 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 1230 (1262)
.|..-+.++.+.+.++.|++-..++++.+ +........-..+|.+..++++|++-|+++++ ..|.....-..+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAREAIA 209 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34445555666666666666666666643 22233444445566666667777777777766 4565444433333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=19 Score=43.64 Aligned_cols=255 Identities=11% Similarity=0.051 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHH----HH-hhcCCChhHHHHHHHHHHH-------CCCCCChhcHHHHHHHHHh
Q 000837 960 NIFHVKRVLDELQENELLPDEVTYNFLI----YG-FSKHKDVSSSKYYIAAMVS-------KGFNPSNRSLRSVISCLCE 1027 (1262)
Q Consensus 960 ~~~~A~~~~~~m~~~g~~pd~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 1027 (1262)
....|.+.++...+.|. ...-..+. .+ +....|++.|+.+|+.+.+ +| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35678888888877753 22222222 22 4566788999999998877 45 33455666777766
Q ss_pred cC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH---
Q 000837 1028 VG-----ELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSR---GKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFC--- 1096 (1262)
Q Consensus 1028 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--- 1096 (1262)
.. +.+.|..++....+.|.+ +.. ..|...+... .+...|.++|..+.+.|..+ .+-.+...|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCC
Confidence 43 556688888888877633 322 2233333222 35678888888888776543 2222332221
Q ss_pred -hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H-h---cCC
Q 000837 1097 -GYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST-CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKL---C-Q---EGR 1167 (1262)
Q Consensus 1097 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~-~---~g~ 1167 (1262)
-.-+.+.|..++++.-++|..........+... .+.++.+.-.+..+...|..-....-..+.... . . ..+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 344678888888888887722223222222222 467777777666666544433111111111111 1 1 124
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLE----NNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~~ 1234 (1262)
.+.+..++.+... .-++.....|++.|..- .++..|...|.+.-..+ ......++.++.
T Consensus 455 ~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~e 517 (552)
T KOG1550|consen 455 LERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMHE 517 (552)
T ss_pred hhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHHh
Confidence 4556666666654 34677777777776654 34677777777776644 334444555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.00 E-value=39 Score=36.94 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
Q 000837 303 IQESRNLVRKAMAFGLEPSSLVFNE 327 (1262)
Q Consensus 303 ~~~a~~~~~~m~~~g~~~~~~~~~~ 327 (1262)
+.+...+++.|++.|+..+.++|-+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHH
Confidence 3444567777777777777766654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=18 Score=35.82 Aligned_cols=96 Identities=7% Similarity=0.019 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHH--
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNS--LISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRIL-- 465 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-- 465 (1262)
..|-.++.... .+.. +.......+.........-++.+ +...++..|++++|...++..... |....+..+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 44555555543 2222 33344444444422222222322 245577888888888888877653 333444443
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHcCC
Q 000837 466 ---LAGYCKARQFDEAKIMVSEMAKSGL 490 (1262)
Q Consensus 466 ---i~~~~~~g~~~~A~~l~~~m~~~~~ 490 (1262)
.......|++|+|+.+++.....++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w 157 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW 157 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH
Confidence 3456777888888888887776554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=88.69 E-value=6.5 Score=36.08 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 000837 1149 KPSMNTWHVLVHKLCQEGRTT---EAERLLISMVQLGDTP--TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFS 1223 (1262)
Q Consensus 1149 ~p~~~~~~~l~~~~~~~g~~~---~A~~l~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 1223 (1262)
.++..+-..+++++.+..+.+ +.+.+++...+. -.| ...+...|.-++++.|++++++.+.+.+++ .+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 567778889999998877555 677888888862 233 355556677789999999999999999999 689999
Q ss_pred hHHHHHHHhhccccccc
Q 000837 1224 THWSLISNLRNSNDKDN 1240 (1262)
Q Consensus 1224 ~~~~~l~~l~~~~~~~~ 1240 (1262)
....+=..+..+..+++
T Consensus 106 Qa~~Lk~~ied~itkeg 122 (149)
T KOG3364|consen 106 QALELKETIEDKITKEG 122 (149)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 88888888887766655
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.58 E-value=51 Score=37.70 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHccCChHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhhHHHHHHHHHhcCCCCCcccHHHHHH
Q 000837 629 DQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVE 708 (1262)
Q Consensus 629 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 708 (1262)
|...+.+++..+..+.+..-...+-.+|+..|- +-..|..++.+|..+ ..+.-..+|+++.+..+ +......-+-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 777788899999999999999999999998764 677888999999888 67888999999888653 3333333333
Q ss_pred HHhhhCchHhHHHHHHHHHhh
Q 000837 709 CLCHKKLLKESLQLFECMLVS 729 (1262)
Q Consensus 709 ~~~~~g~~~~A~~~~~~~~~~ 729 (1262)
.+...++.+.+..+|.+++..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH
Confidence 444458888898888887653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.54 E-value=36 Score=35.93 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CCCCChh
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQS-----GYSPDFS 1223 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~ 1223 (1262)
++...+..|..+|.+.+|.++.++.+... +.+...|..++..+...||--.|.+-++++-+. |++.++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 45667778999999999999999999863 557888899999999999988888777766542 6666665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.37 E-value=24 Score=34.42 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC
Q 000837 756 ALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ 835 (1262)
Q Consensus 756 ~~l~~~~~~g~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 835 (1262)
+.++.+.+.+++++...+..+++.+.+.|++..... +...++.+|.......+-.+. +....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 445556678889999999999999999998766444 444455555554443332222 2223333332223221
Q ss_pred CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 836 PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 836 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0012556777888889999988888775331 2223345666666777766666666655543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=46 Score=36.63 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------
Q 000837 1134 DPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ----EGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLEN-------- 1201 (1262)
Q Consensus 1134 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 1201 (1262)
..|...|.++...+ ++.....++..|.. ..+.++|..+|+++.+.|. ......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 46777788877654 45556666655543 3488899999999998764 44444455 566555
Q ss_pred -------CHhHHHHHHHHHHHcCCCCChhh
Q 000837 1202 -------NLGKASELMQAMQQSGYSPDFST 1224 (1262)
Q Consensus 1202 -------~~~~A~~~~~~~~~~~~~p~~~~ 1224 (1262)
+...|...+......|.......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888888888765554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.00 E-value=55 Score=37.43 Aligned_cols=178 Identities=11% Similarity=0.114 Sum_probs=107.9
Q ss_pred ChhcHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 000837 1014 SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIK 1093 (1262)
Q Consensus 1014 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 1093 (1262)
|.....+++..+...-...-+..++.+|...| .+.-.+..++..|... ..+.-..+++++.+..+. |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555666777777777777777777777643 4566677777777766 456666777777665443 4444445555
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC------CHHHHHHHHcc-cCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 000837 1094 RFCGYGRLDKAVDLLNIMLKKGSTP------NSSSYDSIIST-CNKLDPAMDLHAEMMA-RDLKPSMNTWHVLVHKLCQE 1165 (1262)
Q Consensus 1094 ~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~ll~~-~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~ 1165 (1262)
.|-+ ++.+++..+|.+.... .-| -...|..+... ..+.|.-+.+..++.+ .|..--...+..+-.-|...
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 4544 6777777777776653 112 11234444443 4456666666666654 23333344455555667788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1166 GRTTEAERLLISMVQLGDTPTQEMYSSVVNRYS 1198 (1262)
Q Consensus 1166 g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~ 1198 (1262)
.++++|++++..+.+.. ..|.++-..++..++
T Consensus 219 eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 219 ENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred cCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 89999999999888764 445555555555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.83 E-value=71 Score=38.52 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHcc---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000837 1087 NYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST---CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLC 1163 (1262)
Q Consensus 1087 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 1163 (1262)
+.+--+..+...|+..+|.++-.+.. -||...|..-+.+ .+++++-.++-++.. .|.-|.=++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33334444556777777777665543 4666666555555 566666555444332 2345666777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 000837 1164 QEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211 (1262)
Q Consensus 1164 ~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 1211 (1262)
+.|+.++|.+.+.+.-. .+ ..+.+|...|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 88888888888777432 11 46777888888888776543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.79 E-value=83 Score=38.22 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHH-------CCCccChhhHHHHHHHHHhcC-----ChhhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 000837 888 ANNLRKVRELLSAMIR-------KRLSLSISSYRNLVRWMCMEG-----GVPWALNLKELMLGQNKSHNLIIFNILVFHL 955 (1262)
Q Consensus 888 ~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 955 (1262)
..+.+.|...++.+.+ .+ .+.....+..+|.+.. +.+.|..++....+.|.+ +. ...+...+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~ 335 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLY 335 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHH
Confidence 3455555555555544 33 2223344444444432 344466666555554322 11 11222222
Q ss_pred Hh---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHh--hcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 000837 956 MS---SGNIFHVKRVLDELQENELLPDEVTYNFLIYGF--SKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGE 1030 (1262)
Q Consensus 956 ~~---~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 1030 (1262)
.. ..+...|.++|...-..|.. +..-+..++... .-..+...|..++.+..+.| .|....-...+..+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22 13456677777666666532 111111111111 12235666777777766665 2222211222223333 55
Q ss_pred hhHHHHHHHHHHHcC
Q 000837 1031 LGKSLELSQEMRLKG 1045 (1262)
Q Consensus 1031 ~~~A~~~~~~~~~~g 1045 (1262)
++.+.-.+..+.+.|
T Consensus 413 ~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 413 YDTALALYLYLAELG 427 (552)
T ss_pred ccHHHHHHHHHHHhh
Confidence 555555555555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.95 E-value=8.2 Score=38.49 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCcc--ChhhHHHHHHHHHhcCchhHHHHHHHHHHH
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVP--FLSCYRVFINHLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~l~~~~~~~~A~~~~~~m~~ 277 (1262)
...+..++..|.+.|+.++|++.|.++++....+ -...+-.+++.....+++..+.....++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567789999999999999999999998865433 234556666666666777766666555533
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.65 E-value=74 Score=36.53 Aligned_cols=78 Identities=22% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcCCCchHHhHH
Q 000837 766 CNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDK-NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHS 844 (1262)
Q Consensus 766 ~~~d~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 844 (1262)
+..|+..|...+..+.+.+.+.+...+|.+|... +..|+..++.+ -.-|...-+++.|..+|..-+..++. +...|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalflrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALFLRGLRFNPD-SPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHHHHHhhcCCC-ChHHHH
Confidence 4458899999998888888899999999998865 34455444432 22344455589999999888877665 344443
Q ss_pred H
Q 000837 845 A 845 (1262)
Q Consensus 845 ~ 845 (1262)
.
T Consensus 179 e 179 (568)
T KOG2396|consen 179 E 179 (568)
T ss_pred H
Confidence 3
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.63 E-value=4.3 Score=39.53 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 000837 1133 LDPAMDLHAEMMARDLKPS-MNTWHVLVHKLCQEG----RT-------TEAERLLISMVQLGDTPTQEMYSSVVNRYSLE 1200 (1262)
Q Consensus 1133 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~~-------~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~ 1200 (1262)
+++|++-|++.+. ++|+ ..++.+++.+|...+ +. ++|...|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 5666677777775 7884 478888888876443 33 344444455554 478877777544333
Q ss_pred CCHhHHHHHHHHHHHcCCCCC
Q 000837 1201 NNLGKASELMQAMQQSGYSPD 1221 (1262)
Q Consensus 1201 g~~~~A~~~~~~~~~~~~~p~ 1221 (1262)
.+|-++..++++.+..+.
T Consensus 124 ---~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp ---HTHHHHHHHHHHSSS---
T ss_pred ---HhhHHHHHHHHHHHhhhh
Confidence 457777777777654443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.2 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 000837 1175 LISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1175 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
++++++.. +.++..|..++..|...|++++|++
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 45666642 5568999999999999999998863
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.41 E-value=72 Score=36.18 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVP---DTINYDNLIKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
..+|..++..+.+.|+++.|...+..+...+..+ .+.....-++..-..|+.++|+..++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666666666666666666665532111 122333334445556666666666666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.17 E-value=1.8 Score=29.67 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQ 1180 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~ 1180 (1262)
+|..|+..|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999664
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.9 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
..|..++..+...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.4 Score=29.54 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666666777777666666665
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=66 Score=34.95 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=136.8
Q ss_pred CCHhhHHHHHHHhhcCCChhHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHH
Q 000837 978 PDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGEL----GKSLELSQEMRLKGLVHDSIVQ 1053 (1262)
Q Consensus 978 pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~ 1053 (1262)
+|.......+.++...|. .++...+..+.. .++...-...+.++...|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455555556666666554 333344444443 23445555556667777653 4566666666432 3566666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHc
Q 000837 1054 NAIAEGLLSRGKL-----QEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIS 1128 (1262)
Q Consensus 1054 ~~l~~~~~~~g~~-----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 1128 (1262)
...+.++...+.. ..+...+..+.. .++..+-...+.++.+.++ ++|+..+-.+++. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666655421 233444444333 2355566667777777776 5677777777763 33332222222
Q ss_pred ccCC----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 000837 1129 TCNK----LDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLG 1204 (1262)
Q Consensus 1129 ~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 1204 (1262)
+.|+ ..++...+..+.. .++..+-...+.++.+.|+ .+|...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 2332 4467777777763 5677777888888888887 56777777776542 2 345677888888984
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 000837 1205 KASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1205 ~A~~~~~~~~~~~~~p~~~~~~~~l~~l 1232 (1262)
+|+..++.+.+. .||.......+..|
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 799999999873 55666554444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.95 E-value=2.3 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 1153 NTWHVLVHKLCQEGRTTEAERLLISMVQL 1181 (1262)
Q Consensus 1153 ~~~~~l~~~~~~~g~~~~A~~l~~~~~~~ 1181 (1262)
.+|..++.+|...|++++|+..++++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999984
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.66 E-value=9.7 Score=40.60 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCHHHHHH
Q 000837 390 ITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVN-----RGITPSLSTYRI 464 (1262)
Q Consensus 390 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~ 464 (1262)
.++..++..+...|+.+.+.+.++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45667777777777777777777777777533 667777788888888887777777776665 588888777666
Q ss_pred HHHH
Q 000837 465 LLAG 468 (1262)
Q Consensus 465 li~~ 468 (1262)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=72 Score=34.68 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 000837 1055 AIAEGLLSRGKLQEAEHFLDQIVD 1078 (1262)
Q Consensus 1055 ~l~~~~~~~g~~~~A~~~~~~m~~ 1078 (1262)
..+.++...|.. +|...+.++.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444444443 34555555443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=83.26 E-value=21 Score=36.87 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 000837 1152 MNTWHVLVHKLCQEGRTT-------EAERLLISMVQLGDTP-----TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYS 1219 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~~g~~~-------~A~~l~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 1219 (1262)
...+-.++|.|...|+-+ .|.+.|.++.+....| ...+...++....+.|+.++|.+.+.+++..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 355667777777777744 3555555555433232 2455667788888888888888888888886555
Q ss_pred CChhhHHHHHHHh
Q 000837 1220 PDFSTHWSLISNL 1232 (1262)
Q Consensus 1220 p~~~~~~~~l~~l 1232 (1262)
+.++.......++
T Consensus 198 s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 198 SKEPKLKDMARDQ 210 (214)
T ss_pred CCcHHHHHHHHHH
Confidence 5544344444433
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.19 E-value=14 Score=43.62 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHc-----c-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 000837 1097 GYGRLDKAVDLLNIMLKK--GSTPNSSSYDSIIS-----T-----CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQ 1164 (1262)
Q Consensus 1097 ~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~-----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 1164 (1262)
+.|+-++|+...-.|.++ ...||.+....-|. . .+..+.|.+.|++..+ ..|+...=..++..+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 455666666666555554 33455443211111 1 4456666777777665 55644333333333444
Q ss_pred cC-CHHHHHHHHHHHH-------HCCCCCC-HHHHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 000837 1165 EG-RTTEAERLLISMV-------QLGDTPT-QEMYS--SVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1165 ~g-~~~~A~~l~~~~~-------~~~~~p~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~l~ 1233 (1262)
.| .++...++-+-.. +.|.-.. ...|. .+..+-...+|+.+|++.-+.|.+ ++|-.+-..+.+.++.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK--Lk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK--LKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc--cCCceehHHHHHHHHH
Confidence 44 2222222211111 1111111 22222 233445567888888888888877 5666555555555543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.89 E-value=2 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcC
Q 000837 1192 SVVNRYSLENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1192 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 1217 (1262)
.|..+|...|+.+.|.++++.+++.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45666666777777777776666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.68 E-value=18 Score=38.37 Aligned_cols=101 Identities=6% Similarity=0.074 Sum_probs=61.6
Q ss_pred CCCCChhcHHhHHHHHHhcCCHHHHHHHHHHHhhcC-----CCchHHhHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 000837 800 NMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQ-----PLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLE 874 (1262)
Q Consensus 800 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 874 (1262)
|......+...++.......++++++..+-++.... +..+.++|..++ -.-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 444444555555555556667777777666654331 111223332222 22356677777777777777778
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000837 875 DEVYNMLIQGHCEANNLRKVRELLSAMIRK 904 (1262)
Q Consensus 875 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 904 (1262)
.++++.+++.+.+.+++.+|..+...|+.+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888887877777777777766654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.33 E-value=49 Score=31.93 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=39.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 000837 190 RVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRG 244 (1262)
Q Consensus 190 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 244 (1262)
+.+..++++.++..+.-.. |..++.-..-...+...|++.+|+.+|+.+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 5567888888888877665 5555655566667888888888888888887654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.05 E-value=33 Score=33.06 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=41.5
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCChhcHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000837 991 SKHKDVSSSKYYIAAMVSKGFNPSNRSLRS-VISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEA 1069 (1262)
Q Consensus 991 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 1069 (1262)
.+.++.+++..++..+.- ++|....... -...+...|++++|+.+|+++.+.+ |....-..|+..|....+-..-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 345566666666666665 3444332222 1224556667777777777665542 3333333444444433333333
Q ss_pred HHHHHHHHhC
Q 000837 1070 EHFLDQIVDK 1079 (1262)
Q Consensus 1070 ~~~~~~m~~~ 1079 (1262)
...-+++.+.
T Consensus 97 r~~A~evle~ 106 (160)
T PF09613_consen 97 RRYADEVLES 106 (160)
T ss_pred HHHHHHHHhc
Confidence 3344444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.50 E-value=1.5e+02 Score=36.22 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHc
Q 000837 396 IGWTCREGNLRSALVFFSEILSRGLNP---DVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472 (1262)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 472 (1262)
|+++.+.+.+++|+..-+... |..| -.......|..+...|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 566666666666665444322 2232 1234455555566666666666655555543 444444444444444
Q ss_pred CC
Q 000837 473 RQ 474 (1262)
Q Consensus 473 g~ 474 (1262)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 43
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.46 E-value=1.1e+02 Score=34.67 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 000837 947 IFNILVFHLMSSGNIFHVKRVLDELQENELLP---DEVTYNFLIYGFSKHKDVSSSKYYIAAMVS 1008 (1262)
Q Consensus 947 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 1008 (1262)
+|..++..+.+.|+++.|...+..+...+... +......-...+-..|+..+|+..++..+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555554432111 111222222333344555555555555444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 4e-15
Identities = 108/639 (16%), Positives = 199/639 (31%), Gaps = 127/639 (19%)
Query: 326 NEVAYGYCEKKD----FEDLLSFFTEMKC--TPDVLAGNRIIHTLCSIFGSKRADLFVQE 379
E Y Y KD FED +F C D+ SI + E
Sbjct: 12 GEHQYQY---KDILSVFED--AFVDNFDCKDVQDMPK---------SILSKE-------E 50
Query: 380 LEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKE-- 437
++H D ++ + + WT F E+ L + Y L+S + E
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV----LRIN---YKFLMSPIKTEQR 103
Query: 438 ---GMSKHAKEILDEMVNRG-ITPSLSTYRI-----LLAGYCKARQFDEAKIMVSEMA-- 486
M++ E D + N + + R+ L + R +++ +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGS 161
Query: 487 -KSGLIELSSLEDPLSKGFMILGLNPSAV---RLRRDNDMGFSKVEFFDNLGNGLYLDTD 542
K+ + L + + + L+ N S + L L D
Sbjct: 162 GKTWVA-LDVCLS-----YKVQCKMDFKIFWLNLKNCN----SPETVLEMLQK-LLYQID 210
Query: 543 LDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVK 602
+ R I + + ++ + + LL++ V + + F+ K
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V-QNAKA-WNAFNLSCK 267
Query: 603 GLCASR--SHIKACTGLLEKMPKLANKLD----QESLNLLIQACCKKGLVRDGKKIFDGM 656
L +R + L + E +LL++ + D
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--------DCRPQD-- 317
Query: 657 LQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWL-PGLEDCKSLVE-CLCHKK 714
L E + +S+ + I+D A WD W + +++E L
Sbjct: 318 ----LPREVLTTNPRRLSIIAE-SIRDGLATWD-----NWKHVNCDKLTTIIESSL---N 364
Query: 715 LLK--ESLQLFECMLVSCPCLRSD--ICYIFLEKLCVTGFSSNAHALVEELLQQG---CN 767
+L+ E ++F+ + V I I L + S+ +V +L +
Sbjct: 365 VLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 768 LDQMAYS-HLIRGLCKEKKFSVAFKMLDSMLDK-NMAPCLDVSVSLIPQLFR-----TGR 820
+ S I L + K + + S++D N+ D + P L + G
Sbjct: 421 PKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 821 -LEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYN 879
L+ ++L L F F I A AS + L Q L + Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQ--L---KFYK 531
Query: 880 MLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVR 918
I + R V +L + + +L S Y +L+R
Sbjct: 532 PYICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 1e-13
Identities = 98/658 (14%), Positives = 200/658 (30%), Gaps = 153/658 (23%)
Query: 538 YLDTDLDEYERKLSKIIEDSMIPNFNSLIKMVHARGNLKAALL--LVDEMVRWGQELSLS 595
++D + E++ + I+ F + K+ L +D ++ +S +
Sbjct: 6 HMDFETGEHQYQYKDILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 596 VFSALVKGLCASRSHI--KACTGLLEK-----MPKLANKLDQESLNLLIQACCKKGLVRD 648
+ L L + + + K +L M + + Q S+ + + L D
Sbjct: 65 LR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 649 GKKIFDGMLQRGLTIENESYTTL---LMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDC-K 704
+ + R + Y L L+ L + + G+ K
Sbjct: 123 NQVFAKYNVSRL-----QPYLKLRQALLELRPAKNVL-ID-------------GVLGSGK 163
Query: 705 SLVECLCHKKLLKESLQL-FEC----MLVSCPCLRSDICYIFLEKLCVTGFSSNAHALVE 759
+ + L +Q + + + C + L+KL N + +
Sbjct: 164 T---WVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQ-IDPNWTSRSD 218
Query: 760 ELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSV-SLIPQLFRT 818
+ + +R L K K + +L ++ + ++S L+ T
Sbjct: 219 HSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-----T 271
Query: 819 GRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLED--- 875
R K V + + L +E L L +D
Sbjct: 272 TR-FKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLLLKYL--DCRPQDLPR 320
Query: 876 EVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRW-------MCMEGGVPW 928
EV N +++ IR L+ +++++ +
Sbjct: 321 EV--------LTTNPR--RLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLN----- 364
Query: 929 ALNLKELMLGQNKSHNLIIF----NI--LVFHLMSSGNIFH-VKRVLDELQENELL---P 978
L E + L +F +I ++ L+ I V V+++L + L+ P
Sbjct: 365 VLEPAEY---RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 979 DEVTYNFLIYG------------FSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLC 1026
E T + I ++ H+ + Y I K F+ + +
Sbjct: 422 KESTIS--IPSIYLELKVKLENEYALHRSI-VDHYNIP----KTFDSDDLIPPYLDQYFY 474
Query: 1027 EVGELG---KSLELSQEMRL-------------KGLVHDSIVQNAIAEGLLSRGKLQEAE 1070
+G K++E + M L K + HDS NA +L+ LQ+ +
Sbjct: 475 S--HIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASG-SILN--TLQQLK 528
Query: 1071 HFLDQIVDKDLVPDTINYDNLIKRF---CGYGRL-DKAVDLLNIMLKKGSTPNSSSYD 1124
+ I D D + + I F + K DLL I L + + ++
Sbjct: 529 FYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLLRIAL---MAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-11
Identities = 89/657 (13%), Positives = 187/657 (28%), Gaps = 218/657 (33%)
Query: 667 SYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECM 726
Y +L F+ + D+ K + E+ ++ K + +L+LF +
Sbjct: 17 QYKDILSVFEDA-FVDNFD-CKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTL 71
Query: 727 LVSCPCLRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHL---IRGLCKE 783
L + ++ F VEE+L+ Y L I+ ++
Sbjct: 72 LSK----QEEMVQKF----------------VEEVLRIN-------YKFLMSPIKTEQRQ 104
Query: 784 KKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFH 843
S+ +M D+ L + + + RL+ + LR+ L+ +P
Sbjct: 105 P--SMMTRMYIEQRDR-----LYNDNQVFAKYNVS-RLQPYLKLRQALLELRP------- 149
Query: 844 SAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIR 903
+ G +L G
Sbjct: 150 ---AKNVLIDG-----------VLGSG--------------------------------- 162
Query: 904 KRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNI--LVFHLMSSGN- 960
K +++ + M+ + W L L S ++ + L++ + +
Sbjct: 163 KT-WVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 961 ----IFHVKRVLDELQE--NELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPS 1014
++K + +Q LL + N L+ +V ++K FN S
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAK------AWNAFNLS 265
Query: 1015 NRSL-----RSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEA 1069
+ L + V L + +S + L D + LL +
Sbjct: 266 CKILLTTRFKQVTDFLSA----ATTTHISLDHHSMTLTPDE------VKSLLLK------ 309
Query: 1070 EHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKG-------STPNSSS 1122
+LD DL P + + ++ ++ G N
Sbjct: 310 --YLDCRPQ-DL-P---------REVLTTNPR--RLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 1123 YDSIISTC-NKLDPA------MDLHAEMMARDLKPSMNT----WH--------VLVHKLC 1163
+II + N L+PA L + W V+V+KL
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 1164 QEG---RTTEAERLLISMVQLGDTPT----QEMYSSVVNRYSLE-----NNLGKASE--- 1208
+ + + + I + L ++ S+V+ Y++ ++L
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 1209 ----L---MQAMQQSGYSPDFST-----HWSLISNLRNSNDKDNNRNSQGFLSRLLS 1253
+ ++ ++ F + L +R+ N+ G + L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHD---STAWNASGSILNTLQ 525
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-10
Identities = 76/534 (14%), Positives = 158/534 (29%), Gaps = 142/534 (26%)
Query: 3 TRTTSIFEIDSNHM---SQILSTLRNPR--KLHKIKQARSFLSTEQHIF----------- 46
+ T ++ + + +Q+ + R K++QA L +++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 47 -TSDIVLKNRPKSSLS-----------SSEDQEMETHIDLSSVSFDGIAKSGLSRSSHLL 94
D+ L + + + +S + +E L I + SRS H
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSS 221
Query: 95 ETEKDKSYANASLKDL---------LLNISDV-VPATARKFL---RFLVL-KPENVLEIL 140
+ A L+ L LL + +V F + L+ + + V + L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 141 VG-----FWFECEKVGFRNEKVETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGMLK 195
+ + E + L + LPR EV+ R+ ++
Sbjct: 282 SAATTTHISLDHHSMTL--TPDEVK-SLL--LKYLDCRPQDLPR--EVLTTNPRRLSIIA 334
Query: 196 EVELLLLAMEREGI-----LLKSN-EIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL 249
R+G+ N + + +I+ + VL + R F
Sbjct: 335 -------ESIRDGLATWDNWKHVNCDKLTTIIESSL-------NVLEPAEYRKM----FD 376
Query: 250 SCYRVFINHL-VKMKV-----THLAFRVCVDMVVMGNNLTDLEKD------SFHDVVRLL 297
VF + + + + +V + + +EK S + L
Sbjct: 377 RLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 298 CRD--------RKIQESRNLVRKAMAFGLEPSSL---VFNEVAY-----GYCEKKD-FED 340
R I + N+ + + L P L ++ + + + E+ F
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 341 L-LSF-FTEMKCTPDVLAGNRIIH--TLCSIFGSKRADLFVQELEHSGFRPDEITFGILI 396
+ L F F E K I H T + GS L + ++ + L+
Sbjct: 496 VFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 397 G------WTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAK 444
E + S ++++L L + +F+E + +
Sbjct: 546 NAILDFLPKIEENLICSK---YTDLLRIALMAED-------EAIFEEAHKQVQR 589
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 2e-11
Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 7/198 (3%)
Query: 296 LLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEMKCTPDVL 355
R ++++ + ++ F L K+ L + +P
Sbjct: 37 QQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLL---SKQMAGCLEDCTRQAPESPWEE 93
Query: 356 AGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSA---LVFF 412
R++ + + + L A LV
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 413 SEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRILLAGYCKA 472
+ + YN+++ G ++G K +L + + G+TP L +Y L +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 473 RQFDEA-KIMVSEMAKSG 489
Q + + +M++ G
Sbjct: 214 DQDAGTIERCLEQMSQEG 231
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 2e-11
Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 7/216 (3%)
Query: 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHF 1072
P L ++ L S + L A + L +L A H
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 1073 LD---QIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST 1129
L K + Y+ ++ + G + V +L ++ G TP+ SY + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 1130 CNKLDP----AMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTP 1185
+ D +M LK VL+ + + ++ + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 1186 TQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPD 1221
S ++ ++ +L ++ +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 2e-07
Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 18/260 (6%)
Query: 754 AHALVEELLQQGCNLDQMAYSHLIRGLCKE-KKFSVAFKMLDSMLDKNMAPCLDVSVS-- 810
A L ++ Q + ++ + E K + ++ +L K MA CL+
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 811 -----------LIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEA 859
L+ + L+ A + Q AF +T + A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 860 SKL---FRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNL 916
L + LL ++YN ++ G +++ +L + L+ + SY
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206
Query: 917 VRWMC-MEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQENE 975
++ M + E M + + +L+ + + V +V
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
Query: 976 LLPDEVTYNFLIYGFSKHKD 995
LP V + L+
Sbjct: 267 QLPPPVNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 2e-06
Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 16/324 (4%)
Query: 170 LYKGFRHLPRSCEVMALM--LIRVGMLKEVELLLLAMEREGI--LLKSNEIFSNLIQGYV 225
+ + + ++A + L LL+ + L + ++++ ++ G+
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 226 GVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKM-KVTHLAFRVCVDMVVMGNNLTD 284
G + V V ++ GL P L Y + + + + R M G L
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 285 LEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKKDFEDLLSF 344
L R ++ + P + +++ K
Sbjct: 237 LFTAVLLSEE---DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
Query: 345 FTEMKCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGN 404
+K + + + + E R T + W E
Sbjct: 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKT--LRDQW---EKA 348
Query: 405 LRSALVFFSEILSRGLNPDVHTYNSLISGMFKEGMSKHAKEILDEMVNRGITPSLSTYRI 464
L AL L R + + + + + + + +L + T
Sbjct: 349 LCRALRETKNRLEREVYEGRFSLYPFLCLLDEREV---VRMLLQVLQALPAQGESFTTLA 405
Query: 465 LLAGYCKARQFDEAKIMVSEMAKS 488
+ + VS ++
Sbjct: 406 RELSARTFSRHVVQRQRVSGQVQA 429
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 4e-06
Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 4/221 (1%)
Query: 859 ASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVR 918
A L +E L+Q +L + + +LS +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 919 WMCMEGGVPWALNLKELMLGQNKSH---NLIIFNILVFHLMSSGNIFHVKRVLDELQENE 975
+ +P A +L + GQ + L ++N ++ G + VL +++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 976 LLPDEVTYNFLIYGFSKH-KDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKS 1034
L PD ++Y + + +D + + + M +G ++S L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 1035 LELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQ 1075
++ L + + + + + ++
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 2e-05
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 3/128 (2%)
Query: 366 SIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVH 425
+ + A + P E L+ + +L + L+
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 426 TYNSLISGMFKEGMSKHAKEILD---EMVNRGITPSLSTYRILLAGYCKARQFDEAKIMV 482
+ A +L + +L Y ++ G+ + F E ++
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 483 SEMAKSGL 490
+ +GL
Sbjct: 189 FMVKDAGL 196
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 5e-05
Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%)
Query: 1104 AVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAE---MMARDLKPSMNTWHVLVH 1160
A L + + +P ++ A L
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 1161 KLCQEGRTTEAERLLI---SMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSG 1217
+ A LL+ Q T +MY++V+ ++ + + ++ ++ +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 1218 YSPDFSTHWSLISNLRNSNDKDNN 1241
+PD ++ + + + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGT 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1262 | ||||
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 |
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.9 bits (98), Expect = 3e-04
Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 6/159 (3%)
Query: 1057 AEGLLSRGKLQEAEHFLDQIVDKDLVPDTIN-YDNLIKRFCGYGRLDKAVDLLNIMLKK- 1114
+ LS G+LQ+A L + + P + + I+ C G ++A + L +K
Sbjct: 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
Query: 1115 -GSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAER 1173
P +S ++ A + V + +
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 1174 LLISMVQL-GDTPTQEMYSSVVNRYSLENNLGKASELMQ 1211
L + + +L + +S + +++ LG EL
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFS 159
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1262 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.84 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.87 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.72 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5e-24 Score=164.73 Aligned_cols=380 Identities=16% Similarity=0.114 Sum_probs=213.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999369988999999998524997507868999999861199999999999999789877978699999999941998
Q 000837 812 IPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNL 891 (1262)
Q Consensus 812 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 891 (1262)
...+.+.|++++|.+.++++.+..|. +...+..+...+.+.|++++|...|+++.+.+.. +..++..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCC
T ss_conf 99999869999999999999986899-8999999999999869999999999999985999-899999999996420002
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 89999999999879766854199999999944992149999999971999888210999999999439988999999999
Q 000837 892 RKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDEL 971 (1262)
Q Consensus 892 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 971 (1262)
++|...+......... ....................+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 2222222212112222-22222222222222222222222211122222-222222222222221100013567888874
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 879988897659999999662799547999999999789987-8301999999999219955899999999873999779
Q 000837 972 QENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNP-SNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDS 1050 (1262)
Q Consensus 972 ~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 1050 (1262)
.... +.+...+..+...+...|+.+.|...+++..+. .| +...+..+...+...|++++|...++...... +...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf 0258-610689986363010247199999999999984--94649999997155220052999999999857775-5479
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
Q ss_conf 9999999999945998789999999875999978-768999999999259968999999999868999787879999700
Q 000837 1051 IVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIIST 1129 (1262)
Q Consensus 1051 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 1129 (1262)
..+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|++.++.....
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------- 300 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------------- 300 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC---------------
T ss_conf 99999999999878999999999999984--9998999999999999748799999999865404---------------
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 59924799999999879999889889999999995399879999999999789999999999999999940997689999
Q 000837 1130 CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASEL 1209 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 1209 (1262)
.+.+...+..++.++...|++++|+..++++.+. .+.++.++..++.+|...|++++|+..
T Consensus 301 ------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 301 ------------------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp ------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ------------------CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf ------------------8730010157999999878999999999999986-889899999999999985999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999983999996639999999512665
Q 000837 1210 MQAMQQSGYSPDFSTHWSLISNLRNSND 1237 (1262)
Q Consensus 1210 ~~~~~~~g~~p~~~~~~~~l~~l~~~~~ 1237 (1262)
++++++ ..|+....+..++.++...|
T Consensus 362 ~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 362 YKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHCC
T ss_conf 999997--09998999999999999858
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-22 Score=155.67 Aligned_cols=377 Identities=15% Similarity=0.099 Sum_probs=189.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 19978999999998547999891018859999993699889999999985249975078689999998611999999999
Q 000837 783 EKKFSVAFKMLDSMLDKNMAPCLDVSVSLIPQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKL 862 (1262)
Q Consensus 783 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 862 (1262)
.|++++|...++++.+.. +-+...+..+...+...|++++|...+++..+..|. +..+|..+...+.+.|++++|...
T Consensus 12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 699999999999999868-998999999999999869999999999999985999-899999999996420002222222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999789877978699999999941998899999999998797668541999999999449921499999999719998
Q 000837 863 FRDMLSQGMLLEDEVYNMLIQGHCEANNLRKVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKS 942 (1262)
Q Consensus 863 ~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 942 (1262)
+......... ................................. ................+....+...+....... +
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-C
T ss_conf 2212112222-222222222222222222222222111222222-222222222222211000135678888740258-6
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHH
Q ss_conf 88210999999999439988999999999879988897659999999662799547999999999789987830199999
Q 000837 943 HNLIIFNILVFHLMSSGNIFHVKRVLDELQENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVI 1022 (1262)
Q Consensus 943 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 1022 (1262)
.....+..+...+...|+.++|...+++..+.. +-+...+..+...+...|++++|...+++..... ......+..+.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 244 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 106899863630102471999999999999849-4649999997155220052999999999857775-54799999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99992199558999999998739997799999999999945998789999999875999978768999999999259968
Q 000837 1023 SCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLD 1102 (1262)
Q Consensus 1023 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 1102 (1262)
..+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++..... .+.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCHH
T ss_conf 99998789999999999999849-998999999999999748799999999865404-8730010157999999878999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999986899978787999970059924799999999879999889889999999995399879999999999789
Q 000837 1103 KAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLG 1182 (1262)
Q Consensus 1103 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~ 1182 (1262)
+|++.+++.++. .|+ ++..+..++.++...|++++|+..++++++..
T Consensus 323 ~A~~~~~~al~~--~p~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 323 EAVRLYRKALEV--FPE-------------------------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHTTS--CTT-------------------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH--CCC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999999999986--889-------------------------------89999999999998599999999999999709
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999994099
Q 000837 1183 DTPTQEMYSSVVNRYSLENN 1202 (1262)
Q Consensus 1183 ~~~~~~~~~~l~~~~~~~g~ 1202 (1262)
+.++.+|..++.+|...||
T Consensus 370 -P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 -PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTCC
T ss_pred -CCCHHHHHHHHHHHHHCCC
T ss_conf -9989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.5e-14 Score=100.06 Aligned_cols=267 Identities=14% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 78777999999999819927999999999990888889999999999999169955899999995528985583209999
Q 000837 176 HLPRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVF 255 (1262)
Q Consensus 176 ~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 255 (1262)
.+.......+..+.+.|++++|...+.++++.. |.+..++..++.+|...|++++|+..|.+..+..+. +...|..+
T Consensus 17 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 93 (323)
T d1fcha_ 17 RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMAL 93 (323)
T ss_dssp TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCCCCCC
T ss_conf 653999999999998599999999999999868--998999999999999837758899999851002222-22222222
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----------CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 9999944945689999999998188777-----------88714299999999923998999999999998-89998898
Q 000837 256 INHLVKMKVTHLAFRVCVDMVVMGNNLT-----------DLEKDSFHDVVRLLCRDRKIQESRNLVRKAMA-FGLEPSSL 323 (1262)
Q Consensus 256 l~~l~~~~~~~~A~~~~~~m~~~g~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 323 (1262)
+..+...++++.|...++++....+... ..+.......+..+...+.+.++...+.+... ..-..+..
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~ 173 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 173 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 22222222112111000267773610678887664000000010000147888876579999999999999713012221
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999429989999999982--87999110999999999308944899999999977999789769999999994
Q 000837 324 VFNEVAYGYCEKKDFEDLLSFFTEM--KCTPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCR 401 (1262)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 401 (1262)
.+..+...+...|++++|...|++. ..+.+...|..+..++...|++++|.+.|+...+.. +-+...|..+...+.+
T Consensus 174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHH
T ss_conf 110368888888877550021112222222221110133301221111013788877899884-3249999999999998
Q ss_pred CCCHHHHHHHHHHHHH----------CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 3998999999999985----------99987887899999999934995799999
Q 000837 402 EGNLRSALVFFSEILS----------RGLNPDVHTYNSLISGMFKEGMSKHAKEI 446 (1262)
Q Consensus 402 ~g~~~~A~~~~~~m~~----------~g~~p~~~~y~~li~~~~~~g~~~~A~~l 446 (1262)
.|++++|+..|.+..+ .........+..+-.++...|+.+.+...
T Consensus 253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7899999999999997097570011245999999999999999982988999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.7e-10 Score=78.77 Aligned_cols=151 Identities=5% Similarity=-0.044 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7779999999998199279999999999908888899999999999991699-558999999955289855832099999
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGD-VERAVLVFDQMRGRGLVPFLSCYRVFI 256 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll 256 (1262)
.++|..+..++.+.+.+++|..++.++++.. |.+..+|.....++...|+ +++|+..++...+..+. +..+|+.+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9999999999995886699999999999879--8876999999999998376799999999999988774-226898875
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99994494568999999999818877788714299999999923998999999999998899988989999999999429
Q 000837 257 NHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSSLVFNEVAYGYCEKK 336 (1262)
Q Consensus 257 ~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (1262)
..+.+.|++++|+..++++++..+. +...|..+...+...+++++|...++++++.. +.+...|+-+...+.+.+
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~----n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 8888505378899887555432100----46889988778888886678999999999879-744999988999998745
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.8e-09 Score=72.16 Aligned_cols=271 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 99999999999916995589999999552898558----32099999999944945689999999998188777887---
Q 000837 214 NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF----LSCYRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLE--- 286 (1262)
Q Consensus 214 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~--- 286 (1262)
.+........+...|++++|+..|++.....+..+ ..++..+..++...|++++|+..|++.+..... .+
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~ 88 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ---HDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HCCHH
T ss_conf 999999999999888999999999999854868996799999999999999879999999999999999875---01148
Q ss_pred --CCHHHHHHHHHHHCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CC
Q ss_conf --14299999999923998999999999998-------899988989999999999429989999999982-------87
Q 000837 287 --KDSFHDVVRLLCRDRKIQESRNLVRKAMA-------FGLEPSSLVFNEVAYGYCEKKDFEDLLSFFTEM-------KC 350 (1262)
Q Consensus 287 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~ 350 (1262)
...+..+...+...|++..+...+.+... .........+..+...+...|+++.+...+... +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988878878888899999889999998675034125678889988878999814566668999998887663002
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-
Q ss_conf 99911099999999930894489999999997799978------97699999999943998999999999985999878-
Q 000837 351 TPDVLAGNRIIHTLCSIFGSKRADLFVQELEHSGFRPD------EITFGILIGWTCREGNLRSALVFFSEILSRGLNPD- 423 (1262)
Q Consensus 351 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 423 (1262)
......+......+...+....+...+.+......... ...+..+...+...|+.+.|...+..........+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 46899998888888764667888899999999998731157269999999999998604489899999999976224666
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf --87899999999934995799999999986-----99866999999999999980998899999999988
Q 000837 424 --VHTYNSLISGMFKEGMSKHAKEILDEMVN-----RGITPSLSTYRILLAGYCKARQFDEAKIMVSEMAK 487 (1262)
Q Consensus 424 --~~~y~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 487 (1262)
...+..+...+...|++++|...++.... ........++..+...|...|++++|.+.+++..+
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 77788999999998758799999999999988764266747999999999999987899999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.9e-10 Score=78.47 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999998630049998787779999999998199-2799999999999088888999999999999916995589999
Q 000837 158 ETLWEIFKWASKLYKGFRHLPRSCEVMALMLIRVGM-LKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLV 236 (1262)
Q Consensus 158 ~~a~~~f~w~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 236 (1262)
+.|+..|+-+....|. +..+|.....++...++ +++|...+..+++.. |.+..+|..+...+.+.|++++|+..
T Consensus 60 ~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 60 ERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999999999987988---769999999999983767999999999999887--74226898875888850537889988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99955289855832099999999944945689999999998188
Q 000837 237 FDQMRGRGLVPFLSCYRVFINHLVKMKVTHLAFRVCVDMVVMGN 280 (1262)
Q Consensus 237 ~~~m~~~~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~m~~~g~ 280 (1262)
|+++.+..+. +..+|..++..+.+.++++.|+..|+++++..+
T Consensus 135 ~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p 177 (315)
T d2h6fa1 135 IADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177 (315)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7555432100-468899887788888866789999999998797
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.2e-09 Score=73.40 Aligned_cols=184 Identities=10% Similarity=0.086 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 55899999999873999779999999999994599878999999987599997876899999999925996899999999
Q 000837 1031 LGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNI 1110 (1262)
Q Consensus 1031 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 1110 (1262)
.++|..+++...+...+.+...|...+..+...|+.+.|..+|+++++.........|..++..+.+.|+.+.|.++|..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 59999999999987499879999999999986133899999999999871578699999999999982786889999999
Q ss_pred HHHCCCCCCHHHH--HHHHCC--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCC
Q ss_conf 9868999787879--999700--59924799999999879999889889999999995399879999999999789-999
Q 000837 1111 MLKKGSTPNSSSY--DSIIST--CNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLG-DTP 1185 (1262)
Q Consensus 1111 ~~~~g~~p~~~~~--~~ll~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~-~~~ 1185 (1262)
+++.+.. +...+ ...+.. .|+.+.|..+++.+.+. ...+...|..++..+...|+.+.|..+|+++.... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9980888-67999999999987655778999999999986-100388999999999986986899999999998278986
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf --9999999999999409976899999999983
Q 000837 1186 --TQEMYSSVVNRYSLENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1186 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 1216 (1262)
....|..++..-...|+.+.+..+.+++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999849999999999999987
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=3.8e-09 Score=70.19 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999999994599878999999987
Q 000837 1050 SIVQNAIAEGLLSRGKLQEAEHFLDQIV 1077 (1262)
Q Consensus 1050 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 1077 (1262)
...|...++.+...|+.+.|..+|++..
T Consensus 203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 203 PEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8899999999998698689999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=9.8e-12 Score=86.62 Aligned_cols=77 Identities=6% Similarity=-0.101 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999995399879999999999789999999999999999940997689999999998399999663999999951
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~~l~ 1233 (1262)
.+..++..+...|+.++|...+....+.. +.+..+|..++..|...|++++|...++++++ ++|+...+|..++..+
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKF 320 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 78879999999866999999999887629-13799999999999878999999999999998--7966399999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=9.7e-11 Score=80.28 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=3.0
Q ss_pred CHHHHHHHHH
Q ss_conf 9879999999
Q 000837 1167 RTTEAERLLI 1176 (1262)
Q Consensus 1167 ~~~~A~~l~~ 1176 (1262)
++++|++.++
T Consensus 291 ~~~eA~~~~~ 300 (334)
T d1dcea1 291 YEKETLQYFS 300 (334)
T ss_dssp GHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 9999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=8.1e-10 Score=74.44 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999940997689999999998
Q 000837 1189 MYSSVVNRYSLENNLGKASELMQAMQQ 1215 (1262)
Q Consensus 1189 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 1215 (1262)
+|..++..|...|++++|...+++++.
T Consensus 211 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 211 TNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999987899999999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3.3e-09 Score=70.56 Aligned_cols=96 Identities=11% Similarity=-0.087 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 79999999998199279999999999908888899999999999991699558999999955289855832099999999
Q 000837 180 SCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHL 259 (1262)
Q Consensus 180 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~l 259 (1262)
+|..++.++.+.|+++.|...+.+.+... |+.+.++..+..+|...|++++|+..|+++.+..+. +..++..++.++
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 99999999998799999999999854349--998899960042788877788752344689998761-111588899999
Q ss_pred HHCCCHHHHHHHHHHHHHC
Q ss_conf 9449456899999999981
Q 000837 260 VKMKVTHLAFRVCVDMVVM 278 (1262)
Q Consensus 260 ~~~~~~~~A~~~~~~m~~~ 278 (1262)
...|+++.|...|++.++.
T Consensus 116 ~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9876679999999999865
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.8e-06 Score=53.20 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 992199558999999998739997799999999999945998789999999875999978-7689999999992599689
Q 000837 1025 LCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNLIKRFCGYGRLDK 1103 (1262)
Q Consensus 1025 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 1103 (1262)
+...|+++.|++.|..+ .+++..+|..+...+...|++++|+..|++.++. .|+ ...|..+..++...|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99877999999999864----8988999999999999858914678789999998--55234667889999985424999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q 000837 1104 AVDLLNIMLK 1113 (1262)
Q Consensus 1104 A~~~~~~~~~ 1113 (1262)
|++.|++.+.
T Consensus 89 A~~~~~kAl~ 98 (192)
T d1hh8a_ 89 AIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=4.2e-06 Score=50.85 Aligned_cols=217 Identities=10% Similarity=-0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 77799999999981992799999999999088888999----999999999916995589999999552898558-----
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNE----IFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPF----- 248 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----- 248 (1262)
.+.|...+.++...+++++|...+.++.+......++. ++..+...|.+.|++++|+..|++.........
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999988699999999999999998759988999999999999998088588899999766776532532058
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH---
Q ss_conf 32099999999944-945689999999998188777887--142999999999239989999999999988999889---
Q 000837 249 LSCYRVFINHLVKM-KVTHLAFRVCVDMVVMGNNLTDLE--KDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLEPSS--- 322 (1262)
Q Consensus 249 ~~~~~~ll~~l~~~-~~~~~A~~~~~~m~~~g~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--- 322 (1262)
..++..++..+... ++++.|...|++..+.-.....+. ..++..+...+...|++++|...++++.........
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999988867647878999988999999998733760333468899999999817399999999999986813324555
Q ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCCCCCHHHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf ---89999999999429989999999982-------879991109999999993--089448999999999779997897
Q 000837 323 ---LVFNEVAYGYCEKKDFEDLLSFFTEM-------KCTPDVLAGNRIIHTLCS--IFGSKRADLFVQELEHSGFRPDEI 390 (1262)
Q Consensus 323 ---~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~ 390 (1262)
..+...+..+...|+...|...+++. ...........++.++-. .+.+++|...|+.+. +.|..
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~----~lD~~ 272 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM----RLDKW 272 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS----CCCHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----HCCHH
T ss_conf 69999999999999846599999999999975977444399999999999998368999999999998875----46899
Q ss_pred HHHHHHHH
Q ss_conf 69999999
Q 000837 391 TFGILIGW 398 (1262)
Q Consensus 391 ty~~li~~ 398 (1262)
-...|...
T Consensus 273 ~~~~L~~~ 280 (290)
T d1qqea_ 273 KITILNKI 280 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=5.4e-07 Score=56.48 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 599247999999998799998-8988999999999539987999999999978999999999999999994099768999
Q 000837 1130 CNKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASE 1208 (1262)
Q Consensus 1130 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 1208 (1262)
.|++++|+..|+++++ ..| ++..|..++.++...|++++|+..++++++.. +.++..|..++.++...|++++|+.
T Consensus 16 ~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~ 92 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKR 92 (117)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 6999999999999886--199601343000110110000112100134677740-2202677889999998127999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999998399999663999999951
Q 000837 1209 LMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1209 ~~~~~~~~g~~p~~~~~~~~l~~l~ 1233 (1262)
.+++.++ ..|++...+..++++.
T Consensus 93 ~~~~a~~--~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 93 TYEEGLK--HEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 9999998--4989899999999783
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=1.8e-05 Score=46.88 Aligned_cols=63 Identities=11% Similarity=-0.120 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 9889999999995----39987999999999978999999999999999994----099768999999999839
Q 000837 1152 MNTWHVLVHKLCQ----EGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSL----ENNLGKASELMQAMQQSG 1217 (1262)
Q Consensus 1152 ~~~~~~l~~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 1217 (1262)
+.....+...+.. ..+++.|+..+++..+.| ++..+..|+..|.. ..+.++|.+++++..+.|
T Consensus 178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 23322113121267654310344454676653036---899999999999839997618999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=9.4e-06 Score=48.59 Aligned_cols=128 Identities=8% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 77799999999981992799999999999088888999999999999916995589999999552898558320999999
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 257 (1262)
++.+...+..+.+.|+|+.|...+.++++.. |.+...|..+...|...|++++|+..|++..+.++. +..+|..++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~ 86 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_conf 9999999999999589999999866021100--011333245678887405421288889999987544-6687799999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--HHHCCCHHHHHHHHHH
Q ss_conf 999449456899999999981887778871429999999--9923998999999999
Q 000837 258 HLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL--LCRDRKIQESRNLVRK 312 (1262)
Q Consensus 258 ~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 312 (1262)
++...|++++|...|++.+...+. +...+..+..+ +...+.++++......
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFERAIAGDEH 139 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999949999999989999872999----79999999999999998989999757388
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=5.7e-06 Score=50.00 Aligned_cols=98 Identities=12% Similarity=-0.057 Sum_probs=0.0
Q ss_pred CCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q ss_conf 783019999999992199558999999998739997799999999999945998789999999875999978-7689999
Q 000837 1013 PSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPD-TINYDNL 1091 (1262)
Q Consensus 1013 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 1091 (1262)
|+...+......+.+.|++++|+..|+++.+. -+.+...|..++.+|...|++++|+..|+++++ +.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_conf 64999999999999869999999999999985-999899998178987410000012478888887--188738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999925996899999999986
Q 000837 1092 IKRFCGYGRLDKAVDLLNIMLK 1113 (1262)
Q Consensus 1092 i~~~~~~g~~~~A~~~~~~~~~ 1113 (1262)
+.+|...|++++|+..|+++.+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987999999999999987
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=3.5e-07 Score=57.70 Aligned_cols=108 Identities=7% Similarity=-0.146 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999930894489999999997799978976999999999439989999999999859998788789999999993
Q 000837 357 GNRIIHTLCSIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSRGLNPDVHTYNSLISGMFK 436 (1262)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 436 (1262)
+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+..+. +...|+.|...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 9985799875899999999999882788---9999999999999802478999999999987899-65999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 499579999999998699866999999999999
Q 000837 437 EGMSKHAKEILDEMVNRGITPSLSTYRILLAGY 469 (1262)
Q Consensus 437 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 469 (1262)
.|+..+|...|.+..... .|...++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 699999999999998179-99789999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.3e-05 Score=44.42 Aligned_cols=75 Identities=12% Similarity=-0.041 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999999539987999999999978999999999999999994099768999999999839999966399999995
Q 000837 1155 WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNL 1232 (1262)
Q Consensus 1155 ~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~~l 1232 (1262)
+..++.+|.+.|++++|+..++.+++.. +.++.+|..++.+|...|++++|+..++++++ +.|++......+..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 9999999886421101100000001002-23103467779999872229999999999997--298989999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.3e-07 Score=60.35 Aligned_cols=25 Identities=8% Similarity=-0.128 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 0999999999308944899999999
Q 000837 356 AGNRIIHTLCSIFGSKRADLFVQEL 380 (1262)
Q Consensus 356 ~~~~li~~~~~~g~~~~A~~~~~~m 380 (1262)
.|+.|...+...|+..+|...|.+.
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999869999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.22 E-value=2.6e-05 Score=45.78 Aligned_cols=127 Identities=9% Similarity=-0.075 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999925996899999999986899978787999970059924799999999879999889889999999995399
Q 000837 1088 YDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAEMMARDLKPSMNTWHVLVHKLCQEGR 1167 (1262)
Q Consensus 1088 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 1167 (1262)
+..-+..+.+.|++.+|+..|.+.+..- +. .....+......... ....++..++.+|.+.|+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~---------~~~~~~~~~~~~~~~------~~~~~~~Nla~~~~~l~~ 82 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFF--IH---------TEEWDDQILLDKKKN------IEISCNLNLATCYNKNKD 82 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT---------CTTCCCHHHHHHHHH------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC---------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCC
T ss_conf 9999999999599999999999877607--30---------011105778876310------788999619999998465
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 8799999999997899999999999999999409976899999999983999996639999999512
Q 000837 1168 TTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1168 ~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~~l~~ 1234 (1262)
+++|+..++++++.. +.+..+|..++.++...|++++|+..+++.++ +.|++......+..+..
T Consensus 83 ~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 83 YPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 301110100010000-00012467768999996899999999999998--29898999999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.3e-06 Score=52.45 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 99247999999998799998-898899999999953998---799999999997899999-9999999999994099768
Q 000837 1131 NKLDPAMDLHAEMMARDLKP-SMNTWHVLVHKLCQEGRT---TEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGK 1205 (1262)
Q Consensus 1131 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~---~~A~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 1205 (1262)
+++++|.+.|++... +.| ++.++..++.++.+.++. ++|+.+++++......|+ ..+|..++.+|...|++++
T Consensus 13 ~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~ 90 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90 (122)
T ss_dssp HHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999883--299989999999999998512678999999999998606993199999999999999731699
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999983999996639999999512
Q 000837 1206 ASELMQAMQQSGYSPDFSTHWSLISNLRN 1234 (1262)
Q Consensus 1206 A~~~~~~~~~~g~~p~~~~~~~~l~~l~~ 1234 (1262)
|+..++++++ +.|++.....+...+..
T Consensus 91 A~~~~~~aL~--~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 91 ALKYVRGLLQ--TEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf 9999999997--69098999999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=3.2e-05 Score=45.25 Aligned_cols=82 Identities=5% Similarity=-0.001 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89889999999995399879999999999789999999999999999940997689999999998399999663999999
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLIS 1230 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~ 1230 (1262)
....+..++.++.+.|++++|+..++++++.. +.++..|..++.+|...|++++|+..++++++ +.|++......+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_conf 39999989999986402101366655443100-02236777699999980479999999999998--5989999999999
Q ss_pred HHHCC
Q ss_conf 95126
Q 000837 1231 NLRNS 1235 (1262)
Q Consensus 1231 ~l~~~ 1235 (1262)
.++..
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=2.6e-05 Score=45.83 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999995399879999999999
Q 000837 1155 WHVLVHKLCQEGRTTEAERLLISMV 1179 (1262)
Q Consensus 1155 ~~~l~~~~~~~g~~~~A~~l~~~~~ 1179 (1262)
|..++.++.+.|++++|+..+++++
T Consensus 53 ~~~lg~~~~~~~~~~~A~~~~~~al 77 (112)
T d1hxia_ 53 WRSLGLTQAENEKDGLAIIALNHAR 77 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 2335456410125877410000011
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.06 E-value=3.1e-05 Score=45.34 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999981992799999999999088888999999999999916995589999999552898558320999999999449
Q 000837 184 MALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFLSCYRVFINHLVKMK 263 (1262)
Q Consensus 184 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~l~~~~ 263 (1262)
++..+.+.|++++|...+++.+... |.++.+|..+..+|.+.|++++|+..|++..+..+. +..+|..+..++...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHCC
T ss_conf 9999998760589999886101121--111001233545641012587741000001111110-0000378999999978
Q ss_pred CHHHHHHHHHHH
Q ss_conf 456899999999
Q 000837 264 VTHLAFRVCVDM 275 (1262)
Q Consensus 264 ~~~~A~~~~~~m 275 (1262)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00042 Score=38.14 Aligned_cols=76 Identities=12% Similarity=-0.014 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999995399879999999999789999999999999999940997689999999998399999663999999951
Q 000837 1155 WHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTHWSLISNLR 1233 (1262)
Q Consensus 1155 ~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~~l~~l~ 1233 (1262)
+..++.+|.+.|++++|+..++.++... +.+..+|..++.+|...|++++|+..++++++ +.|++......+..+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 9849999877622011000223222013-10488999889999882789999999999998--5989899999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00062 Score=37.05 Aligned_cols=112 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HH
Q ss_conf 777999999999819927999999999990888889999999999999169955899999995528985583------20
Q 000837 178 PRSCEVMALMLIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYVGVGDVERAVLVFDQMRGRGLVPFL------SC 251 (1262)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~ 251 (1262)
+..+..++..+...|+|++|...+.+.++.. |.+..++..+..+|...|++++|+..|+++.+..+.... .+
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8999999999998599999999999998849--64589998688999881860778999999998680127889889999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999449456899999999981887778871429999999
Q 000837 252 YRVFINHLVKMKVTHLAFRVCVDMVVMGNNLTDLEKDSFHDVVRL 296 (1262)
Q Consensus 252 ~~~ll~~l~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~~~~li~~ 296 (1262)
|..+...+...++++.|+..|.+.+... ++......+-.+
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~-----~~~~~~~~l~~~ 121 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH-----RTPDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCC-----CCHHHHHHHHHH
T ss_conf 9999999999388999999999998459-----999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.58 E-value=8.1e-05 Score=42.67 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 30894489999999997799978976999999999439989999999999859
Q 000837 366 SIFGSKRADLFVQELEHSGFRPDEITFGILIGWTCREGNLRSALVFFSEILSR 418 (1262)
Q Consensus 366 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 418 (1262)
+.|++++|...+++..+.. +.|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8889999999999999978-999999999999999879999999999999986
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.0017 Score=34.32 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCCCCHH
Q ss_conf 89999999995399879999999999789999999999999999940997689999999998-----39999966
Q 000837 1154 TWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQ-----SGYSPDFS 1223 (1262)
Q Consensus 1154 ~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~ 1223 (1262)
.+..++..+...|++++|+..++++++. .+-+...|..++.+|...|+..+|+..|+++.. .|+.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999999998879905789999999984-9851999999999999855799999999999999899848996899
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.0011 Score=35.46 Aligned_cols=118 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99819927999999999990888889999999999999----------16995589999999552898558320999999
Q 000837 188 LIRVGMLKEVELLLLAMEREGILLKSNEIFSNLIQGYV----------GVGDVERAVLVFDQMRGRGLVPFLSCYRVFIN 257 (1262)
Q Consensus 188 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 257 (1262)
+-+.+.|++|...++..++.. |.++.++..+..+|. ..+.+++|+..|++..+.++. +..+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_conf 998736999999999998618--8310899999999987621333367788788899999998873012-0587766899
Q ss_pred HHHHCCC-----------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9994494-----------5689999999998188777887142999999999239989999999999988999
Q 000837 258 HLVKMKV-----------THLAFRVCVDMVVMGNNLTDLEKDSFHDVVRLLCRDRKIQESRNLVRKAMAFGLE 319 (1262)
Q Consensus 258 ~l~~~~~-----------~~~A~~~~~~m~~~g~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 319 (1262)
++...|+ ++.|...|++.++.. |+...+...+..+ ..|.+++.+..+.|..
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-----P~~~~~~~~L~~~------~ka~~~~~e~~k~~~~ 145 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-----PDNTHYLKSLEMT------AKAPQLHAEAYKQGLG 145 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHH------HTHHHHHHHHHHSSSC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHH------HHHHHHHHHHHHHHCC
T ss_conf 998701011357889886787631211000259-----8889999999999------9979789999987359
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00058 Score=37.25 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 89889999999995399879999999999789-----9999-99999999999940997689999999998399999663
Q 000837 1151 SMNTWHVLVHKLCQEGRTTEAERLLISMVQLG-----DTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFST 1224 (1262)
Q Consensus 1151 ~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 1224 (1262)
++..+..++..+.+.|++++|+..++++.+.. ..++ ..++..|+.++...|++++|+..++++++ +.|+...
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 69999999999999779999999999999988653014764789999872688865773988878877988--6929799
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999512
Q 000837 1225 HWSLISNLRN 1234 (1262)
Q Consensus 1225 ~~~~l~~l~~ 1234 (1262)
.+..+..+.+
T Consensus 82 a~~Nl~~~~~ 91 (95)
T d1tjca_ 82 ANGNLKYFEY 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.83 E-value=0.0077 Score=30.09 Aligned_cols=100 Identities=10% Similarity=-0.104 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 7779999--99999819927999999999990888889----------99999999999916995589999999552898
Q 000837 178 PRSCEVM--ALMLIRVGMLKEVELLLLAMEREGILLKS----------NEIFSNLIQGYVGVGDVERAVLVFDQMRGRGL 245 (1262)
Q Consensus 178 ~~~~~~l--~~~l~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 245 (1262)
..+|..+ +......|+|++|...+.+.++..-..+. ..+|+.+..+|...|++++|+..+++......
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999859999999999999986844201020012102799999999999982863001576643553043
Q ss_pred CCCHH----------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 55832----------099999999944945689999999998
Q 000837 246 VPFLS----------CYRVFINHLVKMKVTHLAFRVCVDMVV 277 (1262)
Q Consensus 246 ~p~~~----------~~~~ll~~l~~~~~~~~A~~~~~~m~~ 277 (1262)
..... +++.++.++...|++++|...|++.++
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 100245544311278775269999988888888999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.49 E-value=0.013 Score=28.59 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 99976659988976699999999823987569999999973598899022898999976107447689999998730588
Q 000837 653 FDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPC 732 (1262)
Q Consensus 653 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 732 (1262)
+.++.+-=-.|+..-...+...|.+.|.++.|..++..+.. |..++..+.+.++++.|.+.+.+.-
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~----- 67 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN----- 67 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-----
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHHHHHHHCCHHHHHHHHHHCC-----
T ss_conf 45699987589857899999999878779999999986789---------9999999970315999999998808-----
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCHHHHH
Q ss_conf 87047999999977219821099999999963999896649999999992199789999999985479998910188599
Q 000837 733 LRSDICYIFLEKLCVTGFSSNAHALVEELLQQGCNLDQMAYSHLIRGLCKEKKFSVAFKMLDSMLDKNMAPCLDVSVSLI 812 (1262)
Q Consensus 733 ~~~~~~~~~l~~~~~~g~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 812 (1262)
+..+|..+...+.......-+ .+..............++
T Consensus 68 ------------------------------------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v 106 (336)
T d1b89a_ 68 ------------------------------------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELI 106 (336)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHH
T ss_pred ------------------------------------CHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHH
T ss_conf ------------------------------------899999999999727287899-----999987535788789999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99993699889999999985249975078689999998611999999999999997898779786999999999419988
Q 000837 813 PQLFRTGRLEKAVALREISLKEQPLLLFSFHSAFISGFCVTGKAEEASKLFRDMLSQGMLLEDEVYNMLIQGHCEANNLR 892 (1262)
Q Consensus 813 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 892 (1262)
..|...|.++....+++........ +...++.++..|++ -++.-....+......=+++
T Consensus 107 ~~ye~~~~~e~Li~~Le~~~~~~~~-~~~~~~~L~~lyak--------------------~~~~kl~e~l~~~s~~y~~~ 165 (336)
T d1b89a_ 107 NYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSK--------------------FKPQKMREHLELFWSRVNIP 165 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHSTTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH--------------------HCHHHHHHHHHHCCCCCCHH
T ss_conf 9998769859999999999757744-46799999999998--------------------69499999998602359999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999998797668541999999999449921499999999719998882109999999994399889999999998
Q 000837 893 KVRELLSAMIRKRLSLSISSYRNLVRWMCMEGGVPWALNLKELMLGQNKSHNLIIFNILVFHLMSSGNIFHVKRVLDELQ 972 (1262)
Q Consensus 893 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 972 (1262)
++..+.. ....|..++..|.+.+.++.|..+.-. .+++..-....+..+.+..+++...++.....
T Consensus 166 k~~~~c~---------~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 166 KVLRAAE---------QAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHHHHHH---------TTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHH---------HCCCHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999988---------748749999999855879999999997-----65445669999999972478699999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 79988897659999999662799547999999999789987830199999999921995589999999987399977999
Q 000837 973 ENELLPDEVTYNFLIYGFSKHKDVSSSKYYIAAMVSKGFNPSNRSLRSVISCLCEVGELGKSLELSQEMRLKGLVHDSIV 1052 (1262)
Q Consensus 973 ~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 1052 (1262)
+. .+...+.++......-++...++.+++ .+++.....+++...+.+ +..+
T Consensus 232 ~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------------~~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 232 EF----KPLLLNDLLMVLSPRLDHTRAVNYFSK----------------------VKQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp HH----CGGGHHHHHHHHGGGCCHHHHHHHHHH----------------------TTCTTTTHHHHHHHHTTC---CHHH
T ss_pred HC----CHHHHHHHHHHHCCCCCHHHHHHHHHH----------------------CCCCHHHHHHHHHHHHCC---HHHH
T ss_conf 75----999999999985657998999999985----------------------388077999999999818---0999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999945998789999999
Q 000837 1053 QNAIAEGLLSRGKLQEAEHFLDQ 1075 (1262)
Q Consensus 1053 ~~~l~~~~~~~g~~~~A~~~~~~ 1075 (1262)
.+++...|...++++.-....+.
T Consensus 283 n~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999998671246789999987
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.027 Score=26.66 Aligned_cols=82 Identities=7% Similarity=0.030 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 8898899999999953998---799999999997899999-999999999999409976899999999983999996639
Q 000837 1150 PSMNTWHVLVHKLCQEGRT---TEAERLLISMVQLGDTPT-QEMYSSVVNRYSLENNLGKASELMQAMQQSGYSPDFSTH 1225 (1262)
Q Consensus 1150 p~~~~~~~l~~~~~~~g~~---~~A~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 1225 (1262)
|...+-..+++++.+..+. ++++.+++.....+ +.+ ..++..|+-+|.+.|++++|...++++++ ..|++...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHH
T ss_conf 881019999999982796889999999999998549-505999999999999987329999999999982--39984999
Q ss_pred HHHHHHHHC
Q ss_conf 999999512
Q 000837 1226 WSLISNLRN 1234 (1262)
Q Consensus 1226 ~~~l~~l~~ 1234 (1262)
..+...+..
T Consensus 110 ~~L~~~Ie~ 118 (124)
T d2pqrb1 110 GALKSMVED 118 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.84 E-value=0.059 Score=24.49 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHC
Q ss_conf 987999999999978999999999999999994----09976899999999983
Q 000837 1167 RTTEAERLLISMVQLGDTPTQEMYSSVVNRYSL----ENNLGKASELMQAMQQS 1216 (1262)
Q Consensus 1167 ~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 1216 (1262)
+.+.|.+++++..+.| ++.....|+..|.. ..+.++|..++++..+.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 3578888875000257---40677899999982984677899999999999987
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.87 E-value=0.14 Score=22.15 Aligned_cols=137 Identities=11% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 59987899999998759999787689999999992599689999999998689997878799997005992479999999
Q 000837 1063 RGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLLNIMLKKGSTPNSSSYDSIISTCNKLDPAMDLHAE 1142 (1262)
Q Consensus 1063 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~g~~~~A~~~~~~ 1142 (1262)
.|..++..+++.+.... .+..-||..+--....-+-+-..++++..-.. +. +..|++....+.-+-.
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FD---------ls~C~Nlk~vv~C~~~ 81 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD---------LDKCQNLKSVVECGVI 81 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC---------GGGCSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CC---------CHHHHCHHHHHHHHHH
T ss_conf 42488679999998466---77551244545243000268999999987634-08---------5243267899999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9879999889889999999995399879999999999789999999999999999940997689999999998399
Q 000837 1143 MMARDLKPSMNTWHVLVHKLCQEGRTTEAERLLISMVQLGDTPTQEMYSSVVNRYSLENNLGKASELMQAMQQSGY 1218 (1262)
Q Consensus 1143 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 1218 (1262)
+ ..+....+.....+..+|+-++..++.....+. -.+++.....++.+|.+.|...++.+++.++.+.|.
T Consensus 82 ~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 82 N-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp T-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-----CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 3-----621899999999999826087899999998753-799879999999999885224448999999999759
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.29 Score=20.11 Aligned_cols=169 Identities=8% Similarity=0.018 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99558999999998739997799999999999945998789999999875999978768999999999259968999999
Q 000837 1029 GELGKSLELSQEMRLKGLVHDSIVQNAIAEGLLSRGKLQEAEHFLDQIVDKDLVPDTINYDNLIKRFCGYGRLDKAVDLL 1108 (1262)
Q Consensus 1029 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 1108 (1262)
+..+.+...+......+. +.....-.+......+++..+...+..+... ......-...+..++...|+.+.|...|
T Consensus 266 ~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 266 DVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp TCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 863999999986012346--6699999999998829869999999865846-2428999999999999839815689999
Q ss_pred HHHHHCCCCCCHHHHHHHHCC-CCCH-HHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999868999787879999700-5992-479999999987999988----9889999999995399879999999999789
Q 000837 1109 NIMLKKGSTPNSSSYDSIIST-CNKL-DPAMDLHAEMMARDLKPS----MNTWHVLVHKLCQEGRTTEAERLLISMVQLG 1182 (1262)
Q Consensus 1109 ~~~~~~g~~p~~~~~~~ll~~-~g~~-~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~l~~~~~~~~ 1182 (1262)
..+.. .++ .|..+-.. .|.. .-... .. ...+. ...-..-+..+...|...+|...+..+...
T Consensus 343 ~~~a~---~~~--fYG~LAa~~Lg~~~~~~~~---~~---~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~- 410 (450)
T d1qsaa1 343 HQLMQ---QRG--FYPMVAAQRIGEEYELKID---KA---PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS- 410 (450)
T ss_dssp HHHHT---SCS--HHHHHHHHHTTCCCCCCCC---CC---CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHC---CCC--HHHHHHHHHCCCCCCCCCC---CC---CCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC-
T ss_conf 99845---787--3999999982999899867---79---956777631385989999999869946999999999867-
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999994099768999999999
Q 000837 1183 DTPTQEMYSSVVNRYSLENNLGKASELMQAMQ 1214 (1262)
Q Consensus 1183 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 1214 (1262)
.++.-...++......|.++.|+....+..
T Consensus 411 --~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 411 --KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf --999999999999998798469999999987
|