Citrus Sinensis ID: 000838
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1262 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.965 | 0.849 | 0.694 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.977 | 0.846 | 0.687 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.977 | 0.846 | 0.687 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.961 | 0.852 | 0.670 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.978 | 0.851 | 0.671 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.962 | 0.846 | 0.681 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.975 | 0.838 | 0.662 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.974 | 0.851 | 0.672 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.975 | 0.840 | 0.671 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.972 | 0.851 | 0.663 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1871 bits (4847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 896/1290 (69%), Positives = 1045/1290 (81%), Gaps = 72/1290 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD +LKV+G+V+YNGH + EFVPQRTAAYISQHD HIG
Sbjct: 189 MTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIG 248
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL FSARCQGVG+R++ML EL+RREKAA IKPD DID+YMKA ATEGQEANV+T
Sbjct: 249 EMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVT 308
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VGD+MIRGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 309 DYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 368
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+ IVN LRQ++ I TAVISLLQPAPETYNLFDDIILLSDG IVYQGPR+ VLEFFESM
Sbjct: 369 YSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESM 428
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCPQRKGVADFLQEVTSKKDQQQYW+ + PYRFIT +EFAEA++SFHVG+KL DEL
Sbjct: 429 GFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELA 488
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDK++ H AAL + YG+GK+ELLK C RE LLMKRNSFVY+FK Q+ I AL+TMT
Sbjct: 489 TPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMT 548
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M +D+ DGG+YAG +FF ++++MFNG +E++MTI K+PVFYKQRDL FFP WA
Sbjct: 549 LFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWA 608
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YA+P+WILKIP++ VEV +WV ++YYVIG+DPN RF KQ+ LL+ VNQMA +FRFI A
Sbjct: 609 YAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGA 668
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR M VA+TFG+ ALL+ FALGGF+LSR+D+K WWIWGYW SP+MY+ N+I+ NEF G
Sbjct: 669 VGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGK 728
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
W P NE LG V+KSRGFFP+AYWYW+G+GAL GF ++ + ++LAL +LN
Sbjct: 729 KWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLN---- 784
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
FDKPQAV+ ED E E G SS T S GGD
Sbjct: 785 ----------PFDKPQAVLPEDGENAEN-------------GEVSSQIT-STDGGD---- 816
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
S++E+ Q K+GMVLPFEPHS+ FD+V YSVDMPQEMK QG ED+LVL
Sbjct: 817 -------SISES-----QNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVL 864
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G IKISGYPKK ETFARIS
Sbjct: 865 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARIS 924
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP+VTV+ESL +SAWLRL +VD +TRKMF++E+MELVEL PLR +LVGLP
Sbjct: 925 GYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLP 984
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 985 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1044
Query: 901 IHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FDE + PG+ KIK GYNPATWM
Sbjct: 1045 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWM 1104
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEVTA++QE+ LG+DFT+++K S+LYR NKALI +L P PGSKDL+F TQYSQS +TQ
Sbjct: 1105 LEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQC 1164
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQHWSYWRNP YTAVRF FTT I+L+FGT+FWDLGTK K+QDL NAMGSMY AV
Sbjct: 1165 VACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAV 1224
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LF+GVQ SVQP+V++ERT+FYRE AAGMYS P+A Q +IEIPYIF+QS YG++VY
Sbjct: 1225 LFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVY 1284
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AMIGF+W KFFWY+F MFFTLLYFTFYGMM VA+TPN ++A+IV+ F+G+WN+F+GF
Sbjct: 1285 AMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGF 1344
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHDFL 1232
+IPRPR+P+WWRWYYWA+P+AWTLYGLV SQFGD++ KL ETV+QFLR YFG+KHDFL
Sbjct: 1345 IIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFL 1404
Query: 1233 GVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
GVVA V+ + +F F FA IK FNFQRR
Sbjct: 1405 GVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1826 bits (4730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 890/1294 (68%), Positives = 1035/1294 (79%), Gaps = 60/1294 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTT LLALAG+L LK SG+VTYNGH M EFVP+RTAAYISQHD HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG+R+DML EL+RREKAA IKPD DID +MKA A GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGDEM+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIVN LRQ +HI TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VLEFFESM
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESM 431
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP RKGVADFLQEVTSKKDQ+QYWA + PYRF+TV+EF AF+SFH G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDKS+SH AALA YG +ELLKA RE LLMKRNSFVY+F+ Q+ + +L+ MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRTKMK+DSV GG+Y G +FF ++++MFNG++E+++T+ K+PVF+KQRDL F+P W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y +P+WILKIPI+F+EV +VF++YYVIG+D N G FFKQY L+LA+NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
RNM+VAN F + LL+ LGGF+L+RE +KKWWIWGYW SP+MYAQNAI NE +GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW K + SNE LGVQVLKSRG FP+A WYW+G GA+ GF +L + FTLALT+L
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLR-- 789
Query: 599 YLYHLHFNYFKSKFDKPQAVITED--SERDEQDTKIRGTVELSTLGSSSSLTTRSESGGD 656
Y S+ Q+V E+ +R + +I G V LS S +TR G
Sbjct: 790 -------PYGNSR----QSVSEEELKEKRANLNGEIVGDVHLS------SGSTRRPMG-- 830
Query: 657 IWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLED 716
N + ++ + V Q RGMVLPF P SL FD V YSVDMPQEMK QGV +D
Sbjct: 831 ----NGTENDSTIVDDDTEVTQ---RGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADD 883
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGYPKK ETF
Sbjct: 884 RLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETF 943
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
AR+SGYCEQNDIHSP VTV+ESL FSAWLRL +VDS TRKMFIEE+MELVEL LR +L
Sbjct: 944 ARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDAL 1003
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRT
Sbjct: 1004 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRT 1063
Query: 897 VVCTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNP 928
VVCTIHQPSIDIFE+FDE +IPG+ KIK+GYNP
Sbjct: 1064 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNP 1123
Query: 929 ATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSA 988
ATWMLEVT QE ALGVDF+DI+K+SELY+ NKALI+DLS+P P S DLYFPTQYSQS+
Sbjct: 1124 ATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSS 1183
Query: 989 FTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSM 1048
TQ +ACLWKQ+ SYWRNPPY AVRFFFTT+I+L+FGT+FWDLG K K+QDLFNAMGSM
Sbjct: 1184 LTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSM 1243
Query: 1049 YIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYG 1108
Y AVLFIGV C SVQP+V+VERT+FYRE AAGMYS P+A Q IEIPY +Q+++YG
Sbjct: 1244 YAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYG 1303
Query: 1109 VLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNV 1168
++VYAMIGF+WTAAKFFWY+FFM FTLLYFTFYGMMAV +TPN+HIA+IVS+ F+ +WN+
Sbjct: 1304 IIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNL 1363
Query: 1169 FTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYK 1228
F+GF+IPRPR+PIWWRWY WA P+AWTLYGLVVSQFGD+E +E G VK F+ +YFG+K
Sbjct: 1364 FSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFK 1423
Query: 1229 HDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
H +LG VA VVA FA +F LF I +FNFQ+R
Sbjct: 1424 HSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1824 bits (4724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1294 (68%), Positives = 1034/1294 (79%), Gaps = 60/1294 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTT LLALAG+L LK SG+VTYNGH M EFVP+RTAAYISQHD HIG
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG+R+DML EL+RREKAA IKPD DID +MKA A GQEANV T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGDEM+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIVN LRQ +HI TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VLEFFES
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFEST 431
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP RKGVADFLQEVTSKKDQ+QYWA + PYRF+TV+EF AF+SFH G+ +A+EL
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDKS+SH AALA YG +ELLKA RE LLMKRNSFVY+F+ Q+ + +L+ MT
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRTKMK+DSV GG+Y G +FF ++++MFNG++E+++T+ K+PVF+KQRDL F+P W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y +P+WILKIPI+F+EV +VF++YYVIG+D N G FFKQY L+LA+NQMA +LFRFI
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
RNM+VAN F + LL+ LGGF+L+RE +KKWWIWGYW SP+MYAQNAI NE +GH
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 SWRKF--TPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW K + SNE LGVQVLKSRG FP+A WYW+G GA+ GF +L + FTLALT+L
Sbjct: 732 SWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLR-- 789
Query: 599 YLYHLHFNYFKSKFDKPQAVITED--SERDEQDTKIRGTVELSTLGSSSSLTTRSESGGD 656
Y S+ Q+V E+ +R + +I G V LS S +TR G
Sbjct: 790 -------PYGNSR----QSVSEEELKEKRANLNGEIVGDVHLS------SGSTRRPMG-- 830
Query: 657 IWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLED 716
N + ++ + V Q RGMVLPF P SL FD V YSVDMPQEMK QGV +D
Sbjct: 831 ----NGTENDSTIVDDDTEVTQ---RGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADD 883
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSI ISGYPKK ETF
Sbjct: 884 RLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETF 943
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
AR+SGYCEQNDIHSP VTV+ESL FSAWLRL +VDS TRKMFIEE+MELVEL LR +L
Sbjct: 944 ARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDAL 1003
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRT
Sbjct: 1004 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRT 1063
Query: 897 VVCTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNP 928
VVCTIHQPSIDIFE+FDE +IPG+ KIK+GYNP
Sbjct: 1064 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNP 1123
Query: 929 ATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSA 988
ATWMLEVT QE ALGVDF+DI+K+SELY+ NKALI+DLS+P P S DLYFPTQYSQS+
Sbjct: 1124 ATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSS 1183
Query: 989 FTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSM 1048
TQ +ACLWKQ+ SYWRNPPY AVRFFFTT+I+L+FGT+FWDLG K K+QDLFNAMGSM
Sbjct: 1184 LTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSM 1243
Query: 1049 YIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYG 1108
Y AVLFIGV C SVQP+V+VERT+FYRE AAGMYS P+A Q IEIPY +Q+++YG
Sbjct: 1244 YAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYG 1303
Query: 1109 VLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNV 1168
++VYAMIGF+WTAAKFFWY+FFM FTLLYFTFYGMMAV +TPN+HIA+IVS+ F+ +WN+
Sbjct: 1304 IIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNL 1363
Query: 1169 FTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYK 1228
F+GF+IPRPR+PIWWRWY WA P+AWTLYGLVVSQFGD+E +E G VK F+ +YFG+K
Sbjct: 1364 FSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFK 1423
Query: 1229 HDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
H +LG VA VVA FA +F LF I +FNFQ+R
Sbjct: 1424 HSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1816 bits (4703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/1291 (67%), Positives = 1022/1291 (79%), Gaps = 78/1291 (6%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
M LLLGPP+SGKTT LLALAGKLD LK +GRVTYNGH M EFVPQRTAAYI Q+D HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRET A++AR QGVG+RYDML ELARREK A IKPDPDID++MKA++T G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGD+M+RGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LR +HI + TA+ISLLQPAPET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP RKGVADFLQEVTSKKDQ QYWA ++ PYRFI V+EFAEAF+SFHVG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDK++SH AAL K YGVG +EL+K FSRE+LLMKRNSFVY FK Q+ + A +TMT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M+K + DG +Y G +FF ++++MFNG +E+SMTI K+PVFYKQRDL F+P W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y+LP W+LKIPISF+E + F++YYVIG+DPN GR FKQY LL+ +NQMA ALF+ +AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG A+LV FALGG +LSR+DIKKWWIWGYW SP+MY QNAI+ANEF GH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW + +S+E LGV LKSRGF P AYWYW+G GAL GFV+L + FTLALTFLN
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLN---- 777
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
KPQAVI E+ DE + +
Sbjct: 778 ----------SLGKPQAVIAEEPASDETELQ----------------------------- 798
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
S++S + EA KKRGMVLPFEPHS+ FD V YSVDMPQEM QG ED+LVL
Sbjct: 799 --SARSEGVVEAGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVL 852
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPK +TFARIS
Sbjct: 853 LKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARIS 912
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQ DIHSP VTV+ESL +SAWLRL EVD RK+FIEE+MELVEL PLRQ+LVGLP
Sbjct: 913 GYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLP 972
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
G +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 973 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1032
Query: 901 IHQPSIDIFESFD----------------------------EAIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FD E+I GI KI GYNPATWM
Sbjct: 1033 IHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWM 1092
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEV+ SQE ALGVDF ++K SELY+ NK LI++LS+P PGSKDLYFPTQYSQS TQ
Sbjct: 1093 LEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQC 1152
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+A LWKQHWSYWRNPPYTAVRF FT I+LMFGT+FWDLG KT QDL NAMGSMY AV
Sbjct: 1153 MASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAV 1212
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LF+G+Q SVQP+V+VERT+FYRE AAGMYS P+A AQ IEIPY+ +Q+ +YG++VY
Sbjct: 1213 LFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVY 1272
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AMIGF+WTA KFFWY+FFM+ + L FTFYGMMAVAMTPNHHIA++VS+ F+G+WN+F+GF
Sbjct: 1273 AMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGF 1332
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKL-ESGETVKQFLRSYFGYKHDF 1231
LIPRP +P+WW WYYW P+AWTLYGL+ SQFGD+ + + +S +VKQF+R ++GY+ F
Sbjct: 1333 LIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGF 1392
Query: 1232 LGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
LGVVA + F +F +FA+GIK FNFQ+R
Sbjct: 1393 LGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1783 bits (4619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1292 (67%), Positives = 1028/1292 (79%), Gaps = 57/1292 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTT LLALAGKLD LKVSG+VTYNGH M EFVP+RTAAYISQHD HIG
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVGTRY+ML ELARREKAA IKPD DID+YMKA A GQE++V+T
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVT 305
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VG+EM+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 306 DYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 365
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LRQ IHI TAVISLLQPAPETYNLFDDIILLSDGQ+VYQGPRE VLEFFE M
Sbjct: 366 YQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFM 425
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP RKGVADFLQEVTS+KDQ QYW ++ PYRF+ V++FA+AF+SFHVG+ + +EL
Sbjct: 426 GFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELS 485
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFD+++SH AALA YGV ++ELLKA RE LLMKRN+F+YIFK V + + AL+ MT
Sbjct: 486 EPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMT 545
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
FFRT M+ D G +Y G ++FA+ VMFNG+AE++MT++K+PVF+KQRDL FFP WA
Sbjct: 546 TFFRTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWA 604
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y +P+WIL+IPI+F+EV V+VF++YYVIG+DP+ RFFKQY LLLA+NQM+ ALFRFIA
Sbjct: 605 YTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAG 664
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR+MVV++TFG ++LL ALGGF+L+R D+KKWWIWGYW SPL YAQNAI NEFLGH
Sbjct: 665 IGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGH 724
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW + P N LGV VLKSRG F +A WYW+GLGAL G+ LL ++ +T+AL+ L+
Sbjct: 725 SWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSP--F 782
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGT-VELSTLGSSSSLTTRSESGGDIWG 659
H + + + A +T + ++DTK R +ELS + +S G
Sbjct: 783 TDSHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNS------------G 830
Query: 660 RNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLV 719
NS+ S S ++GMVLPF P S+ F++V YSVDMP+ MK QG+ ED+L+
Sbjct: 831 INSADSSAS------------RKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLL 878
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISGYPKK ETFARI
Sbjct: 879 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARI 938
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
SGYCEQNDIHSP VTV+ESL FSAWLRL EVDSE RKMFIEE+M+LVEL LR +LVGL
Sbjct: 939 SGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGL 998
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVC
Sbjct: 999 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVC 1058
Query: 900 TIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATW 931
TIHQPSIDIFE+FDE I G+ +IK+GYNPATW
Sbjct: 1059 TIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATW 1118
Query: 932 MLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQ 991
MLEVT+++QE LGVDF++I+++SELY+ NK LIE+LS P PGS DL FPTQYS+S TQ
Sbjct: 1119 MLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQ 1178
Query: 992 FIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIA 1051
+ACLWKQ+WSYWRNP YTAVR FT +I+LMFGT+FW+LGT+T K QDLFNAMGSMY A
Sbjct: 1179 CLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAA 1238
Query: 1052 VLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLV 1111
VL+IGVQ SVQP+V VERT+FYRE AAGMYS P+A Q AIE+PYI +Q+ +YGVLV
Sbjct: 1239 VLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLV 1298
Query: 1112 YAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTG 1171
Y+MIGF+WT AKF WY+FFM+FTLLYFTFYGMMAV +TPN IAAI+S+ F+ +WN+F+G
Sbjct: 1299 YSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSG 1358
Query: 1172 FLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESG-ETVKQFLRSYFGYKHD 1230
+LIPRP+IP+WWRWY W P+AWTLYGLV SQFGD++ LE TV QF+ YFG+ H+
Sbjct: 1359 YLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHN 1418
Query: 1231 FLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
FL VVAVV FA F FLF+ I +FNFQRR
Sbjct: 1419 FLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1761 bits (4561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1291 (68%), Positives = 1045/1291 (80%), Gaps = 76/1291 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTT LLALAGKLDS+LKV+G+VTYNGH + EFVPQRTAAYISQHD HIG
Sbjct: 193 MTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIG 252
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL FSARCQGVG+RY+ML EL+RREKAA IKPD DID++MKA +TEGQEA V+T
Sbjct: 253 EMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVT 312
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VGD+MIRGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 313 DYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTT 372
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+ IVN L+Q++ I TA+ISLLQPAPETYNLFDDIILLSDG IVY+GPRE VLEFFESM
Sbjct: 373 YSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESM 432
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKG ADFLQEVTSKKDQQQYW ++ PYRFIT +EFAEA++SFHVG+K++DEL+
Sbjct: 433 GFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELK 492
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
FDKS+SH AAL + YG+GKR+LLK C RE LLM+RNSFVY+FK Q+ I AL+TMT
Sbjct: 493 TTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMT 552
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+FFRTKM +DS DGG+Y+G +FF ++++MFNG +E+ MT+ K+PVFYKQRD F+P WA
Sbjct: 553 IFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWA 612
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YA+P+WILKIP++F EV +WVF++YYV+G+DPN GRFFKQ+ LLL VNQMA ALFRFIAA
Sbjct: 613 YAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAA 672
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR M VA+TFG ALL+ FALGGF+L+R D+K WWIWGYW SPLMY+ NAI+ NEF G
Sbjct: 673 VGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQ 732
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
W+ EPLG V+++RGFFPDAYWYW+G+GAL GF+++ +IA+++AL +LN
Sbjct: 733 KWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLN---- 788
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
FDKPQA I++ E + SS +T+ E
Sbjct: 789 ----------PFDKPQATISD-------------ESENNESESSPQITSTQEG------- 818
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
+S+S++ KK+GMVLPF+PHS+ FDEV YSVDMP EM+ G +++LVL
Sbjct: 819 DSASEN-------------KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVL 865
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSIKISGYPKK +TFARIS
Sbjct: 866 LKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARIS 925
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP+VTV ESL +SAWLRL +V+ E R MF+EE+M+LVEL PLR +LVGLP
Sbjct: 926 GYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLP 985
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCT
Sbjct: 986 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCT 1045
Query: 901 IHQPSIDIFESFD----------------------------EAIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FD E+IPG+ KI GYNPATWM
Sbjct: 1046 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWM 1105
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEVTA+SQE+ALGVDFTD++K+S+LYR NKALI++LS P PG+ DL+F +++SQ +TQ
Sbjct: 1106 LEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQC 1165
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQHWSYWRNP YTAVR FTT I+L+FGT+FWD+GTK +NQDL NAMGSMY AV
Sbjct: 1166 MACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAV 1225
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LF+GVQ SVQP+VSVERT+FYRE AAGMYS P+A AQ IEIPYIF+Q+++YG++VY
Sbjct: 1226 LFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVY 1285
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
+MIGF+WT AKFFW FFMFFT LYFTF+GMM VA+TPN ++A+IV+ F+ +WN+F+GF
Sbjct: 1286 SMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGF 1345
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKL-ESGETVKQFLRSYFGYKHDF 1231
++PRPRIPIWWRWYYW P+AWTLYGLV SQFGDL+D L + +TV+QFLRS FG+KHDF
Sbjct: 1346 IVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDF 1405
Query: 1232 LGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
LGVVA V+ FA VF F FALGIK FNFQRR
Sbjct: 1406 LGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1758 bits (4552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1294 (66%), Positives = 1010/1294 (78%), Gaps = 63/1294 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTTFLLALAG+L LK SG+VTYNGH M +FVPQRTAAYISQHD HIG
Sbjct: 206 MTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 264
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FSARCQGVG+R+DML EL RREKAA IKPD D+D +MKA A EGQE+N+IT
Sbjct: 265 EMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLIT 324
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGD+M+RGISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTT
Sbjct: 325 DYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTT 384
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV LRQ IHI TAVISLLQPAPETY+LFDDIILLSDG IVYQGPRE VLEFFE M
Sbjct: 385 FQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELM 444
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYWA + PYR++ ++EFA AF+SFH G+ +A+EL
Sbjct: 445 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELA 504
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AAL YGV ELLKA RE LL+KRNSFVYIF+ +Q+ + + MT
Sbjct: 505 TPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMT 564
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+FFRTKM +DSVADG ++ G +FFA++++M NG +E+ +TI K+PVF+KQRDL FFP W
Sbjct: 565 VFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWT 624
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y +P+WILK P+SF+EV + F+SYYVIG+DPN GRFFKQY L+LAV+QMA ALFRF+
Sbjct: 625 YTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGG 684
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
RN++VAN FG+ LL+ LGGF+L+R+ + KWWIWGYW SP+MYAQNA+ NEFLGH
Sbjct: 685 AARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGH 744
Query: 541 SWRKFTPDS--NEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW K +S NE LGVQ L SRG FP+A WYW+G GAL GF++L +I FTLALT+L
Sbjct: 745 SWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPD 804
Query: 599 YLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTV-ELSTLGSSSSLTTRSESG-GD 656
K Q I+E+ E E+ I G V ++ T+ SS++L +G G
Sbjct: 805 --------------GKSQPSISEE-ELKEKQANINGNVLDVDTMASSNNLAIVGSTGTGS 849
Query: 657 IWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLED 716
NS QP +RGMVLPF P SL F+++ YSVDMPQEMK G++ED
Sbjct: 850 EIADNS---------------QPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVED 894
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETF
Sbjct: 895 RLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETF 954
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
AR+SGYCEQNDIHSP VTV ESL FSAWLRL +VDS TRKMFIEE+MELVEL PLR +L
Sbjct: 955 ARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDAL 1014
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VGLPGVNGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRT
Sbjct: 1015 VGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRT 1074
Query: 897 VVCTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNP 928
VVCTIHQPSIDIFE+FDE I G+ KI +GYNP
Sbjct: 1075 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNP 1134
Query: 929 ATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSA 988
ATWMLEVT SQE AL VDF DI+++SEL++ NKALI++LS P PGS +LYFPTQYSQS
Sbjct: 1135 ATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSF 1194
Query: 989 FTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSM 1048
Q +ACLWKQH SYWRNPPY A+R FFTT+I+L+FGT+FWDLG K G++QDLFNAMGSM
Sbjct: 1195 LIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSM 1254
Query: 1049 YIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYG 1108
Y AVLFIGV SVQP+VSVERT+FYRE AAGMYS P+A Q AIE PY +QS +Y
Sbjct: 1255 YAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYS 1314
Query: 1109 VLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNV 1168
++VY+MIGF WT AKFFWY+FFMFFTLLYFTFYGMMAV +TP++H+A+IVS+ F+ +WN+
Sbjct: 1315 IIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNL 1374
Query: 1169 FTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYK 1228
FTGF+I RP P+WWRWY W P+AWTLYGL+VSQ+GD+ ++ G V F+ +YF +K
Sbjct: 1375 FTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFK 1434
Query: 1229 HDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
H +LG VAVV+ F +F FLF I + NFQ+R
Sbjct: 1435 HSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1757 bits (4550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1295 (67%), Positives = 1031/1295 (79%), Gaps = 65/1295 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
M+LLLGPP SGKT+ LLALAGKLDS+LKVSGRVTYNGH+M EFVPQRT+AYI QHD HIG
Sbjct: 182 MSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIG 241
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVGTRYDML EL+RREK A IKPDPDIDVYMKA++ EGQE+ V+T
Sbjct: 242 EMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVT 300
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGD MIRGISGGQKKRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 301 DYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTT 360
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LRQ++HI TA+I+LLQPAPETY+LFDDI+LLS+GQIVYQGPRE +LEFFE+M
Sbjct: 361 YQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAM 420
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ QYW ++ PYR+I+V +F+EAFK FHVG+ L ELR
Sbjct: 421 GFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELR 480
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFD++++H AAL YG+ K EL KACFSRE+LLMKRNSFVYIFK++Q+ I + MT
Sbjct: 481 VPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMT 540
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RTKM + SV DG ++ G MF +V +FNG+AE++M+I K+P+FYKQRDL F+P WA
Sbjct: 541 VFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWA 600
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YALPTW+LKIPISF+E VW+ ++YYV+G+DPN RFF+ Y LL+ ++QMA LFR +AA
Sbjct: 601 YALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAA 660
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR MVVA+TFG+ A L+L LGGFL+SRE+IKKWWIWGYW SPLMYAQNAI NEFLGH
Sbjct: 661 LGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGH 720
Query: 541 SWRKFTP--DSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW K SN+ LGVQVLK RG F DA WYW+G+GAL G+++L +I F L L +L+
Sbjct: 721 SWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLD-- 778
Query: 599 YLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSS--SLTTRSESGGD 656
K QAV++E+ R++ + VEL TLG+ S S + + G+
Sbjct: 779 ------------PLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGE 826
Query: 657 IWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLED 716
I G ++ +KRGMVLPF P S+ FD + YSVDMPQEMK +GV ED
Sbjct: 827 ITGADT-----------------RKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTED 869
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKK ETF
Sbjct: 870 RLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETF 929
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
ARI+GYCEQNDIHSP VTV+ESL +SAWLRL EVDSE RKMF+EE+MELVEL LR +L
Sbjct: 930 ARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGAL 989
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT
Sbjct: 990 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1049
Query: 897 VVCTIHQPSIDIFESFD----------------------------EAIPGIEKIKNGYNP 928
VVCTIHQPSIDIFE+FD E I G+ KIK+GYNP
Sbjct: 1050 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNP 1109
Query: 929 ATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSA 988
ATWMLEVT +QE LG++F ++++ S+LY+ NK LI +LS P PGS DL+FPTQ+SQ
Sbjct: 1110 ATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPF 1169
Query: 989 FTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSM 1048
FTQ +ACLWKQH SYWRNP YTA R FFTT+I+L+FGT+F +LG K K DLFN++GSM
Sbjct: 1170 FTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSM 1229
Query: 1049 YIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYG 1108
Y AVLFIG+Q +VQPIV VERT+FYRE AAGMYS P+A AQ IEIP+IF+Q+ +YG
Sbjct: 1230 YAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYG 1289
Query: 1109 VLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNV 1168
++VY++IGFDWT KFFWY+FFMFFT +YFTFYGMMAVAMTPN IAAIVST F+ +WN+
Sbjct: 1290 LIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNI 1349
Query: 1169 FTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDK-LESGETVKQFLRSYFGY 1227
F GFLIPRPRIPIWWRWY WA P+AWTLYGLV SQ+GD+ + LE GE V+ ++R YFG+
Sbjct: 1350 FAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGF 1409
Query: 1228 KHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
+HD+LG VA V GFAA+F F+FA IK FNFQRR
Sbjct: 1410 RHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1755 bits (4546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1295 (67%), Positives = 1025/1295 (79%), Gaps = 64/1295 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGKTT LLALAG+L +K SG+VTYNGH M +FVPQRTAAYISQHD HIG
Sbjct: 201 MTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 260
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FSARCQGVG+R+DML EL+RREKAA IKPD DID +MKA A EGQE N+IT
Sbjct: 261 EMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLIT 320
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VGD+M+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 380
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV LRQ IHI TAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFE M
Sbjct: 381 FQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELM 440
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYW + PYR++ V++FA AF+SFH G+ +A+EL
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELA 500
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS++H AAL YGV ELLKA REFLLMKRNSFVYIF+ Q+ + + + MT
Sbjct: 501 TPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMT 560
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+FFRTKM +DSV DG ++ G +FF+++++MFNG +E+ +TI K+PVF+KQRDL FFP W
Sbjct: 561 VFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWT 620
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y +P+WILKIP+SF+EV +VF+SYYVIG+DP+AGRFFKQY L+LA+NQMA ALFRF+
Sbjct: 621 YTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGG 680
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
RNM+VAN FG+ LL+ LGGF+L RE +KKWWIWGYW SP+MYAQNAI NEFLGH
Sbjct: 681 AARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGH 740
Query: 541 SWRKFTPD--SNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW K + SNE LGVQ L+SRG FP+A WYW+G GAL GF++L + FTLALT+L
Sbjct: 741 SWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLK-- 798
Query: 599 YLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTV-ELSTLGSSSSLT--TRSESGG 655
+ K Q ++E+ E E+ I G V ++ T+ SS++L +E+
Sbjct: 799 ------------PYGKSQPSVSEE-ELKEKQANINGNVLDVDTMASSTNLAIVDNTETSS 845
Query: 656 DIWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLE 715
+I NS QP +RGMVLPF P SL FD + YSVDMPQEMK G++E
Sbjct: 846 EI-ADNS---------------QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVE 889
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET 775
D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ET
Sbjct: 890 DRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQET 949
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
FAR+SGYCEQNDIHSP VTV ESL FSAWLRL +VDS TRKMFIEE+MELVEL PLR +
Sbjct: 950 FARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDA 1009
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR
Sbjct: 1010 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1069
Query: 896 TVVCTIHQPSIDIFESFD----------------------------EAIPGIEKIKNGYN 927
TVVCTIHQPSIDIFE+FD E I G+ +IK+GYN
Sbjct: 1070 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYN 1129
Query: 928 PATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQS 987
PATWMLEV+ SQE ALGVDF DI+++SEL++ NKALI++LS P PGS +LYFPT+YS S
Sbjct: 1130 PATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLS 1189
Query: 988 AFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGS 1047
Q +ACLWK H SYWRNPPY A+R FFTT+I+L+FGT+FWDLG KTGK+QDLFNAMGS
Sbjct: 1190 FLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGS 1249
Query: 1048 MYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLY 1107
MY AVLFIGV SVQP+VSVERT+FYRE AAGMYS P+A Q AIE PY +QS +Y
Sbjct: 1250 MYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIY 1309
Query: 1108 GVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWN 1167
G++VY+MIGF WTAAKFFWY+FFMFFT LYFTFYGMMAV +TP++H+A+IVS+ F+G+WN
Sbjct: 1310 GIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWN 1369
Query: 1168 VFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGY 1227
+F+GF+IPRP++PIWWRWY W P+AWTLYGLV SQFGD+ ++ G VK F+ +YF +
Sbjct: 1370 LFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDF 1429
Query: 1228 KHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
KH +LGVVAVV+ F +F FLF I + NFQ+R
Sbjct: 1430 KHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1715 bits (4442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1291 (66%), Positives = 1014/1291 (78%), Gaps = 64/1291 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP +GKTT LLALAGKLD++LKV+G VTYNGH M EFVPQRT+AYISQHD HIG
Sbjct: 186 MTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIG 245
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFS+RCQGVGTRY+ML EL+RREK A IKPDPD+DVYMKAVA EGQE+ V+T
Sbjct: 246 EMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVT 304
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VGD MIRGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 305 DYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 364
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIVN LRQ++HI TA+I+LLQPAPETY+LFDDI+LLSDGQIVYQGPRE VLEFFESM
Sbjct: 365 FQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESM 424
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQQQYW + PYRF+ V EF+EAFKSFHVG KL +EL
Sbjct: 425 GFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELS 484
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFD+S++H AAL YG+ K ELLKAC RE+LLMKRNSFVYIFK+VQ+ + AL+ MT
Sbjct: 485 TPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMT 544
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+FFRTK+ ++ + D ++ G MF +V +FNG+AE++M+I K+PVFYKQRDL F+PPWA
Sbjct: 545 VFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWA 604
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YALPTWILKIPISFVE VW+ ++YYVIG+DPN R F+ Y LL+ ++Q+A LFR +AA
Sbjct: 605 YALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAA 664
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR+MVVA+TFG A LVL LGGF+++RE IKK+WIWGYW SPLMYAQNAI NEFLGH
Sbjct: 665 VGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGH 724
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW K + + LG + L++RG F D WYW+G+GAL G+++L + F L L +L+
Sbjct: 725 SWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLD---- 780
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
K Q ++E++ ++++ + VEL+T GS+++ GG + R
Sbjct: 781 ----------PLGKGQTTVSEEALQEKEANRTGANVELATRGSAAT-----SDGGSVEIR 825
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
+ +K+GMVLPF P S+ FD V YSVDMPQEMK +GV EDKL+L
Sbjct: 826 KDGN---------------RKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLL 870
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G I+ISGYPK ETFARIS
Sbjct: 871 LKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARIS 930
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP VTV+ESL +SAWLRL EVD + RKMF++E+M+LVELN LR SLVGLP
Sbjct: 931 GYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLP 990
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCT
Sbjct: 991 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCT 1050
Query: 901 IHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FDE +I G++KIK YNPATWM
Sbjct: 1051 IHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWM 1110
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEVT SQE LG++F ++++ S+LY+ NK LI++LS P PGSKDL+F TQ+SQS Q
Sbjct: 1111 LEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQC 1170
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQH SYWRNP YTA R FFT +I+L+FGT+FWDLG K + DL NAMGSMY AV
Sbjct: 1171 LACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAV 1230
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LFIG+Q +VQPIV VERT+FYRE AAGMYS P+A AQ IE+P+I +Q+ LYG+LVY
Sbjct: 1231 LFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVY 1290
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
+MIGFDWTAAKF WY+FFMFFT LYFT+YGMMAVAMTPN IAAIV+ F+ +WN+F GF
Sbjct: 1291 SMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGF 1350
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKL-ESGETVKQFLRSYFGYKHDF 1231
+IPRPRIPIWWRWYYWA P+AWTLYGLVVSQFG+ D + + ETVK FLR + G++HDF
Sbjct: 1351 IIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDF 1410
Query: 1232 LGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
L VV V+V F +F +FA IK NFQRR
Sbjct: 1411 LPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1262 | ||||||
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.974 | 0.852 | 0.701 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.985 | 0.395 | 0.726 | 0.0 | |
| 449460732 | 1451 | PREDICTED: pleiotropic drug resistance p | 0.984 | 0.856 | 0.692 | 0.0 | |
| 449483991 | 1451 | PREDICTED: LOW QUALITY PROTEIN: pleiotro | 0.984 | 0.856 | 0.692 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.984 | 0.856 | 0.692 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.966 | 0.853 | 0.708 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.984 | 0.857 | 0.689 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.985 | 0.845 | 0.714 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.853 | 0.697 | 0.0 | |
| 224053414 | 1408 | predicted protein [Populus trichocarpa] | 0.968 | 0.867 | 0.7 | 0.0 |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1912 bits (4953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 907/1293 (70%), Positives = 1060/1293 (81%), Gaps = 63/1293 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD +LK SG VTYNGH M EF+PQ TAAYISQHD HIG
Sbjct: 183 MTLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIG 242
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FS RCQGVGTR DML+EL+RREKAA IKPDPDIDV+MKAVATEGQE NV+T
Sbjct: 243 EMTVRETLSFSVRCQGVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVT 302
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD LVGDEM+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 303 DYVLKILGLEVCADTLVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 362
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN L+Q IHI TAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFE M
Sbjct: 363 YQIVNSLKQTIHILDGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYM 422
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTSK DQ+QYW K+ PY F+TVQEF+EAF+S+ VGQ + EL
Sbjct: 423 GFKCPERKGVADFLQEVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELS 482
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AALA + YGV K ELLKACF+RE+LLMKRNSFVYIFKL Q+ + A+++MT
Sbjct: 483 TPFDKSKSHPAALAARKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMT 542
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LF RT+M ++ + D GVY G +FF+++ +MFNG +E+SMTI K+PVFYKQRDLQF+PPWA
Sbjct: 543 LFLRTEMHREDLTDAGVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWA 602
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YALPTWILKIPI+F EV VWVF++YYVIG+DPN R FKQYFLLL VNQMA LFRFIAA
Sbjct: 603 YALPTWILKIPITFFEVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAA 662
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG+ ALL +FALGG +LSR+DIKKWW WGYW SP+MY QNA+VANEFLG
Sbjct: 663 VGRNMIVANTFGSFALLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGE 722
Query: 541 SWRKFTPD--SNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRG 598
SW + S + LGVQ +KSRGFFP AYWYW+G+GAL GF +L ++ FTLALT LN
Sbjct: 723 SWNHVPANSTSTDSLGVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLN-- 780
Query: 599 YLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIW 658
++KP AVI+++ ER + + G ++LS GSS T + G
Sbjct: 781 ------------PYEKPHAVISDEPERSD---RTGGAIQLSQNGSSHRTITENGVG---- 821
Query: 659 GRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
+ MT+ A Q KK+GMVLPFEPHS+ F++V YSVDMPQEMK QG+ +DKL
Sbjct: 822 --------IRMTDEAN---QNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIADDKL 870
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
VLL GVSGAF+PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISGYPKK +TFAR
Sbjct: 871 VLLKGVSGAFKPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFAR 930
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
ISGYCEQNDIHSP VTV+ESL +SAWLRLAPEVD ETRKMF+ E+MELVELNPLRQ+LVG
Sbjct: 931 ISGYCEQNDIHSPHVTVYESLIYSAWLRLAPEVDPETRKMFVNEVMELVELNPLRQALVG 990
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LPGVNGLSTEQRKRLTI+VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 991 LPGVNGLSTEQRKRLTISVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1050
Query: 899 CTIHQPSIDIFESFD----------------------------EAIPGIEKIKNGYNPAT 930
CTIHQPSID+FE+FD E I G K+K+GYNPAT
Sbjct: 1051 CTIHQPSIDLFEAFDELFLMKRGGEEIYVGPLGRHSCHMIDYFEVIEGASKVKDGYNPAT 1110
Query: 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFT 990
WMLEVT+++QE++LGVDF I+K SELYR NKA+I++LS PGSKDLYFPTQYSQS T
Sbjct: 1111 WMLEVTSSAQELSLGVDFATIYKNSELYRRNKAIIKELSTSVPGSKDLYFPTQYSQSFLT 1170
Query: 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI 1050
Q IACLWKQ SYWRNPPYTAVRF FTT I+LMFGT+FWDLG+KT QD+FN+ GSMY
Sbjct: 1171 QCIACLWKQRLSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYA 1230
Query: 1051 AVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVL 1110
AV+F+G Q SVQP+V++ERT+FYRE AAGMYS P+A AQ +EIPYIF Q+ +YG+L
Sbjct: 1231 AVVFLGTQNAASVQPVVAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLL 1290
Query: 1111 VYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170
Y+MIGF+WTAAKFFWYIFFM+FTL+YFT+YGMMAVA+TPNHHIA++VS+ F+G+WN+F+
Sbjct: 1291 TYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYGMMAVAVTPNHHIASVVSSAFYGIWNLFS 1350
Query: 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESG-ETVKQFLRSYFGYKH 1229
GF++PR R+P+WWRWYYW P++WTLYGL+ SQF D++D E G +TV+ F+R Y+G +H
Sbjct: 1351 GFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGSQFSDIKDAFEGGSQTVEDFVREYYGIRH 1410
Query: 1230 DFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
DFLGVVA V+ G +F F+FA+ IK FNFQRR
Sbjct: 1411 DFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQRR 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1903 bits (4929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1293 (72%), Positives = 1080/1293 (83%), Gaps = 49/1293 (3%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLAL+GKLDSSLKV+G+VTYNGH M EFVPQRTA YISQHD HIG
Sbjct: 1868 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 1927
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG RYDML EL+RREKAA IKPDPDIDV+MKAVATEGQ+ NVIT
Sbjct: 1928 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVIT 1987
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD LVGD+MIRGISGGQ+KRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 1988 DYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTT 2047
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LRQ IHI + TA+ISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL+FFESM
Sbjct: 2048 YQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESM 2107
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP+RKGVADFLQEVTS+KDQQQYWA K+ PY F+TV+EFAEAF+SFH+G+KL EL
Sbjct: 2108 GFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELA 2167
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDK++SH AAL + YGV K+ELL AC SRE+LLMKRNSFVYIFKL Q+ I A ++MT
Sbjct: 2168 TPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMT 2227
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RT+M K+S DG +Y G +FF +V++MFNG +E++MTI K+PVFYKQR L F+P WA
Sbjct: 2228 IFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWA 2287
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YALP+WILKIPI+FVEV VWVF+SYYVIG+DPN GR FKQY LL+ VNQMA ALFRFIAA
Sbjct: 2288 YALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAA 2347
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG+ +LL+LFALGGF+LSRE++KKWWIWGYW SPLMYAQNAIV NEFLG
Sbjct: 2348 AGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGK 2407
Query: 541 SWRKFTP-DSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGY 599
SW K + DS E LGV VLKSRGFF +AYWYW+G GAL GF+L+ + +T+ALT+LN
Sbjct: 2408 SWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLN--- 2464
Query: 600 LYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWG 659
F+KPQAVITE+SE ++K G +ELS+ S T S D G
Sbjct: 2465 -----------AFEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERRDEIG 2509
Query: 660 RNSSSQSLSM-TEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
R+ SS S S+ EA + K+GMVLPF+P S+ FD++ YSVDMP+EMK QGVLED+L
Sbjct: 2510 RSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRL 2569
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETFAR
Sbjct: 2570 ELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFAR 2629
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
ISGYCEQNDIHSP VT+HESL +SAWLRL +VDS+TRKMFIEE+MELVEL PL+ SLVG
Sbjct: 2630 ISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVG 2689
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 2690 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 2749
Query: 899 CTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPAT 930
CTIHQPSIDIFE+FDE I G+ KIK+GYNPAT
Sbjct: 2750 CTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFQGIEGVSKIKDGYNPAT 2809
Query: 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFT 990
WMLEVT+++QE LGVDFT+I+K S+LYR NK LI++LS+P PGSKDLYFPTQYSQS FT
Sbjct: 2810 WMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFT 2869
Query: 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI 1050
Q +ACLWKQ SYWRNPPYTAVRFFFTT I+L+FGT+FWDLGTK K QDL NAMGSMY
Sbjct: 2870 QCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYA 2929
Query: 1051 AVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVL 1110
AVLF+GVQ SVQP+V+VERT+FYRE AAGMYS P+A AQA +EIPY+F Q+ +YGV+
Sbjct: 2930 AVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVI 2989
Query: 1111 VYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170
VYAMIGF+WTAAKFFWY+FFMFFTLLYFTFYGMMAVA TPN HIAAIV+ F+GLWN+F+
Sbjct: 2990 VYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFS 3049
Query: 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE-SGETVKQFLRSYFGYKH 1229
GF++PR RIP+WWRWYYWA P+AWTLYGLV SQFGD++D+ E +G+TV+Q+L YFG++H
Sbjct: 3050 GFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEH 3109
Query: 1230 DFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
DFLGVVA V+ GF +F F+FA IK FNFQRR
Sbjct: 3110 DFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460732|ref|XP_004148099.1| PREDICTED: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1896 bits (4911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1292 (69%), Positives = 1055/1292 (81%), Gaps = 49/1292 (3%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT L LAGKL LK SGRVTYNGH M EFVPQRT+AYISQ D HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FSARCQGVG RYDML EL+RREKAA IKPDPD+D+ MKA A GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGDEM RGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN +RQ IHI + TA+ISLLQPAPETY LFDDIIL+SDGQ+VYQGPRE VLEFF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF CPQRKGVADFLQEVTS+KDQ+QYW ++ YRF++V+EF+EAF+SFHVG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELA 478
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AAL + YG K+ELLKAC SRE LLMKRNSFVYIFKL+Q+ + A VTMT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M + +V DG VY G +FFAI+I+MFNG++E+++TI+K+PVFYKQRD FFPPWA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y++PTWILKIPI+FVEV +WV ++YYV+G+DPNAGRFFK + +LL VNQMA ALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRN++VANTFG+ ALL + LGGF+L+R+D+ WWIWGYW SP+MYAQN I NEFLGH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
WR P+SNE LGV +LKSRG FP A WYW+G+GA G++LL + FT+AL +L+
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLD---- 774
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGT--VELSTLGSSSSLTTRSESGGDIW 658
F+KPQA++++++ D+ K + +ELS+ G SSS R+E+ +
Sbjct: 775 ----------PFEKPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSS--ERTENQISLS 822
Query: 659 GRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
R SS++ S +E A Q KKRGMVLPFEPHS+ FDE+ Y+VDMPQEMK QGV ED+L
Sbjct: 823 SRTSSARVGSFSEEAN---QNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRL 879
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETFAR
Sbjct: 880 ELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFAR 939
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I+GYCEQ DIHSP VTV+ESL +SAWLRL P+VDS TRKMF+EE+MEL+ELNPLR ++VG
Sbjct: 940 IAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVG 999
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1000 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1059
Query: 899 CTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPAT 930
CTIHQPSIDIF++FDE +I G+ KIK+GYNPAT
Sbjct: 1060 CTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPAT 1119
Query: 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFT 990
WMLE+T A+QE LGV+F ++K SELYR NKALI++LS P S +LYFPT+YSQS F
Sbjct: 1120 WMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFI 1179
Query: 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI 1050
Q IACLWKQH SYWRNPPY+AVRF FTT I+LMFGT+FWDLG+K G QDLFNAMGSMY
Sbjct: 1180 QCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYA 1239
Query: 1051 AVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVL 1110
AVLFIGVQ SVQP+V++ERT+FYRE AAGMYS P+A Q IE+PYIFIQ+ +YGV+
Sbjct: 1240 AVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVI 1299
Query: 1111 VYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170
VY MIGF+WTAAKFFWYIFFM+FTLLYFTFYGMM VA+TPNH+IAAIVS+ F+G WN+F+
Sbjct: 1300 VYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFS 1359
Query: 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHD 1230
GF++PR RIPIWWRWYYW P+AWTLYGLV SQFGD+ D ++S +TV +F+ +YFGYK+D
Sbjct: 1360 GFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYD 1419
Query: 1231 FLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
FLGVVA V G +FGF+FA IK FNFQ+R
Sbjct: 1420 FLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483991|ref|XP_004156752.1| PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1895 bits (4910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1292 (69%), Positives = 1054/1292 (81%), Gaps = 49/1292 (3%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT L LAGKL LK SGRVTYNGH M EFVPQRT+AYISQ D HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FSARCQGVG RYDML EL+RREKAA IKPDPD+D+ MKA A GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGDEM RGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN +RQ IHI + TA+ISLLQPAPETY LFDDIIL+SDGQ+VYQGPRE VLEFF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF CPQRKGVADFLQEVTS+KDQ+QYW ++ YRF++V+EF+EAF SFHVG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFXSFHVGKKLGDELA 478
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AAL + YG K+ELLKAC SRE LLMKRNSFVYIFKL+Q+ + A VTMT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M + +V DG VY G +FFAI+I+MFNG++E+++TI+K+PVFYKQRD FFPPWA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y++PTWILKIPI+FVEV +WV ++YYV+G+DPNAGRFFK + +LL VNQMA ALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRN++VANTFG+ ALL + LGGF+L+R+D+ WWIWGYW SP+MYAQN I NEFLGH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
WR P+SNE LGV +LKSRG FP A WYW+G+GA G++LL + FT+AL +L+
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLD---- 774
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGT--VELSTLGSSSSLTTRSESGGDIW 658
F+KPQA++++++ D+ K + +ELS+ G SSS R+E+ +
Sbjct: 775 ----------PFEKPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSS--ERTENQISLS 822
Query: 659 GRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
R SS++ S +E A Q KKRGMVLPFEPHS+ FDE+ Y+VDMPQEMK QGV ED+L
Sbjct: 823 SRTSSARVGSFSEEAN---QNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRL 879
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETFAR
Sbjct: 880 ELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFAR 939
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I+GYCEQ DIHSP VTV+ESL +SAWLRL P+VDS TRKMF+EE+MEL+ELNPLR ++VG
Sbjct: 940 IAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVG 999
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1000 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1059
Query: 899 CTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPAT 930
CTIHQPSIDIF++FDE +I G+ KIK+GYNPAT
Sbjct: 1060 CTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPAT 1119
Query: 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFT 990
WMLE+T A+QE LGV+F ++K SELYR NKALI++LS P S +LYFPT+YSQS F
Sbjct: 1120 WMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFI 1179
Query: 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI 1050
Q IACLWKQH SYWRNPPY+AVRF FTT I+LMFGT+FWDLG+K G QDLFNAMGSMY
Sbjct: 1180 QCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYA 1239
Query: 1051 AVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVL 1110
AVLFIGVQ SVQP+V++ERT+FYRE AAGMYS P+A Q IE+PYIFIQ+ +YGV+
Sbjct: 1240 AVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVI 1299
Query: 1111 VYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170
VY MIGF+WTAAKFFWYIFFM+FTLLYFTFYGMM VA+TPNH+IAAIVS+ F+G WN+F+
Sbjct: 1300 VYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFS 1359
Query: 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHD 1230
GF++PR RIPIWWRWYYW P+AWTLYGLV SQFGD+ D ++S +TV +F+ +YFGYK+D
Sbjct: 1360 GFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYD 1419
Query: 1231 FLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
FLGVVA V G +FGF+FA IK FNFQ+R
Sbjct: 1420 FLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1895 bits (4910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1292 (69%), Positives = 1054/1292 (81%), Gaps = 49/1292 (3%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT L LAGKL LK SGRVTYNGH M EFVPQRT+AYISQ D HIG
Sbjct: 179 MTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHIG 238
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETL+FSARCQGVG RYDML EL+RREKAA IKPDPD+D+ MKA A GQE NV+T
Sbjct: 239 EMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVVT 298
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGDEM RGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 299 DYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 358
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN +RQ IHI + TA+ISLLQPAPETY LFDDIIL+SDGQ+VYQGPRE VLEFF+ M
Sbjct: 359 YQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQHM 418
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF CPQRKGVADFLQEVTS+KDQ+QYW ++ YRF++V+EF+EAF+SFHVG+KL DEL
Sbjct: 419 GFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDELA 478
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AAL + YG K+ELLKAC SRE LLMKRNSFVYIFKL+Q+ + A VTMT
Sbjct: 479 TPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTMT 538
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M + +V DG VY G +FFAI+I MFNG++E+++TI+K+PVFYKQRD FFPPWA
Sbjct: 539 LFFRTEMHRRTVDDGSVYMGALFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPWA 598
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y++PTWILKIPI+FVEV +WV ++YYV+G+DPNAGRFFK + +LL VNQMA ALFR I A
Sbjct: 599 YSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIGA 658
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRN++VANTFG+ ALL + LGGF+L+R+D+ WWIWGYW SP+MYAQN I NEFLGH
Sbjct: 659 LGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLGH 718
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
WR P+SNE LGV +LKSRG FP A WYW+G+GA G++LL + FT+AL +L+
Sbjct: 719 KWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLD---- 774
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGT--VELSTLGSSSSLTTRSESGGDIW 658
F+KPQA++++++ D+ K + +ELS+ G SSS R+E+ +
Sbjct: 775 ----------PFEKPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSS--ERTENQISLS 822
Query: 659 GRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
R SS++ S +E A Q KKRGMVLPFEPHS+ FDE+ Y+VDMPQEMK QGV ED+L
Sbjct: 823 SRTSSARVGSFSEEAN---QNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRL 879
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETFAR
Sbjct: 880 ELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFAR 939
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I+GYCEQ DIHSP VTV+ESL +SAWLRL P+VDS TRKMF+EE+MEL+ELNPLR ++VG
Sbjct: 940 IAGYCEQTDIHSPHVTVYESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVG 999
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1000 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1059
Query: 899 CTIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPAT 930
CTIHQPSIDIF++FDE +I G+ KIK+GYNPAT
Sbjct: 1060 CTIHQPSIDIFDAFDELFLLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPAT 1119
Query: 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFT 990
WMLE+T A+QE LGV+F ++K SELYR NKALI++LS P S +LYFPT+YSQS F
Sbjct: 1120 WMLEITTAAQETTLGVNFNTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFI 1179
Query: 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI 1050
Q IACLWKQH SYWRNPPY+AVRF FTT I+LMFGT+FWDLG+K G QDLFNAMGSMY
Sbjct: 1180 QCIACLWKQHLSYWRNPPYSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYA 1239
Query: 1051 AVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVL 1110
AVLFIGVQ SVQP+V++ERT+FYRE AAGMYS P+A Q IE+PYIFIQ+ +YGV+
Sbjct: 1240 AVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVI 1299
Query: 1111 VYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170
VY MIGF+WTAAKFFWYIFFM+FTLLYFTFYGMM VA+TPNH+IAAIVS+ F+G WN+F+
Sbjct: 1300 VYGMIGFEWTAAKFFWYIFFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFS 1359
Query: 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHD 1230
GF++PR RIPIWWRWYYW P+AWTLYGLV SQFGD+ D ++S +TV +F+ +YFGYK+D
Sbjct: 1360 GFIVPRTRIPIWWRWYYWICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYD 1419
Query: 1231 FLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
FLGVVA V G +FGF+FA IK FNFQ+R
Sbjct: 1420 FLGVVAAVHVGITVLFGFIFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1895 bits (4908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1290 (70%), Positives = 1059/1290 (82%), Gaps = 70/1290 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD LK SGRVTYNGH M EFVPQRTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAF+ARCQGVG RY+M+ EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CADI+VG+EM+RG+SGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN ++Q IHI + TAVISLLQP PETYNLFDDIILLSDGQIVYQGPRE VLEFFE M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ QYWA K+ PY F+TV+EFAEAF+SF VG++L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS+SH AAL K YGVGK ELLKACFSRE LLMKRNSFVYIFKL Q+ I A+V MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LF RT+M +DSV +GG+Y G +FF++V +MFNG +EIS+TI K+PVFYKQR L F+PPWA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
++LP WI KIPI+ V+V +WVF++YYVIG+DPN GRFFKQY LL V+QMA LFRFIAA
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG+ ALL LFALGGF+LSR++IKKWWIWGYW SPLMY QNAIV NEFLG+
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW K PD+ E LG+QVL+SRGFF AYWYW+G+GAL GF LL + FTLALTFL
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLG---- 777
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
KPQAVI+EDS S++S T G++
Sbjct: 778 ----------PLQKPQAVISEDS------------------ASNTSGKT-----GEVIQL 804
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
+S L + E K++GMVLPFEPHS+ F+++ YSVDMPQEMK QG ED+L L
Sbjct: 805 SSVRTELIVEEN-----HQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLEL 859
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISG+PKK ETFARIS
Sbjct: 860 LRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 919
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP VTV+ESL +S+WLRL PEV+SETRKMFIEE+MELVEL PLRQ+LVGLP
Sbjct: 920 GYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLP 979
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 980 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1039
Query: 901 IHQPSIDIFESFD----------------------------EAIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FD EAI G+ IK+GYNPATWM
Sbjct: 1040 IHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWM 1099
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEV++++QE+ LG+DF I+K SELYR NKALIE+LS P GS DLYFPTQYSQS FTQ
Sbjct: 1100 LEVSSSAQEMVLGLDFAAIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQC 1159
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQHWSYWRNPPYTAVRF FTT+I+LMFGT+FWDLG+KT K QDLFNAMGSMY A+
Sbjct: 1160 MACLWKQHWSYWRNPPYTAVRFLFTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAI 1219
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
+F+G+Q SVQP+V+VERT+FYRE AAGMYS P+A AQ IE+PYIF+Q+++YG++VY
Sbjct: 1220 VFLGIQNASSVQPVVAVERTVFYRERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVY 1279
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AMIGF+W+AAKFFWY+FFM+FTLL++T+YGMMAVA+TPN +A+IVS+ F+ +WN+F+GF
Sbjct: 1280 AMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGF 1339
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHDFL 1232
+IPRPRIP+WWRWY W P+A+TLYGLV SQFGD++ LESGETV+ F+RSYF +KH+ L
Sbjct: 1340 IIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELL 1399
Query: 1233 GVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
G VA V GFA +F F FA IK FNFQRR
Sbjct: 1400 GAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1290 (68%), Positives = 1049/1290 (81%), Gaps = 47/1290 (3%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKL LK SGRVTYNGH M EFVPQRT+AYISQ+D HIG
Sbjct: 179 MTLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIG 238
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG+RY+MLMELARREK A IKPDPDID+YMKA A EGQEANV+T
Sbjct: 239 EMTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVT 298
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD LVGDEM RGISGGQKKRVTTGEM+VGPA A+FMDEISTGLDS+TT
Sbjct: 299 DYILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTT 358
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIVN LRQ++HI S TA+I+LLQPAPET+ LFDDIILLSDGQIVYQGPRE VL+FFE M
Sbjct: 359 FQIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYM 418
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYWAHK+ PY F++V EF+EAF+SFH+G+KL DEL
Sbjct: 419 GFKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELA 478
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
PFDKS++H +L K YGV K+EL KAC SRE+LLMKRNSFVYIFK+ Q+ I +TMT
Sbjct: 479 TPFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMT 538
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LF RT+M +++ DGGVY G +FF + +MFNG++E++MTI+K+PVFYKQRDL F+P WA
Sbjct: 539 LFLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWA 598
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YALPTWILKIPI+FVEV VWV ++YYVIG+DPN RFFKQY +LL NQMA ALFR AA
Sbjct: 599 YALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAA 658
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRN++VANT G A+L LGGF++SR+++KKWWIWGYW SP+MY QNAI NEFLG
Sbjct: 659 LGRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGS 718
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW F P+S +PLGV +LKSRG FP+AYWYW+G GAL G++ L + FTLAL +L+
Sbjct: 719 SWNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLD---- 774
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
F KPQA+I++++ ++ + +ELS+ + R + +
Sbjct: 775 ----------PFGKPQAIISKEAYSEKTAVRTGEFIELSS--KEKNFQERGSASHRVASS 822
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
+SS +S A + KRGMVLPF+P S+ F +V Y+V MPQEMK QG+ ED+L L
Sbjct: 823 RTSSARVSSLSNA---FENSKRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLEL 879
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKK ETFARIS
Sbjct: 880 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIS 939
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQ DIHSP VTV+ESL +SAWLRL PEVDS+TR MF+EE+MELVEL LR++LVGLP
Sbjct: 940 GYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLP 999
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GVNGLS EQRKRLT+AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 1000 GVNGLSVEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1059
Query: 901 IHQPSIDIFESFDEA----------------------------IPGIEKIKNGYNPATWM 932
IHQPSIDIF++FDE I GI KIK+GYNPATWM
Sbjct: 1060 IHQPSIDIFDAFDELLLLKRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWM 1119
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEVT +QEVALGVDF+DI+K SELYR NKALI++LS+P PGSKDLYFPTQYS+S TQ
Sbjct: 1120 LEVTTTAQEVALGVDFSDIYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQC 1179
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQHWSYWRNPPYTAVR F T I+LMFGT+FW LGTK + QD+FNAMGSMY AV
Sbjct: 1180 MACLWKQHWSYWRNPPYTAVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAV 1239
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LF+G +VQP+V++ERT+FYRE AAGMYS +A Q IE+PYI IQ+ +YGV+VY
Sbjct: 1240 LFLGFHNSTAVQPVVAIERTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVY 1299
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AM+GF+WT +KFFWY+FFM+FTLLYFTFYGMM VA+TPNH+IAAIVS+ F+ +WN+F+GF
Sbjct: 1300 AMVGFEWTISKFFWYLFFMYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGF 1359
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHDFL 1232
++PR RIPIWWRWYYWA P+AWTLYGLV SQFGD++++L++GETV+ FLRSYFG++HDF+
Sbjct: 1360 IVPRTRIPIWWRWYYWACPIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFV 1419
Query: 1233 GVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
G+VAVV+ G +FGFLFA I+ FNFQRR
Sbjct: 1420 GIVAVVLVGICVLFGFLFAFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1889 bits (4892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 936/1310 (71%), Positives = 1077/1310 (82%), Gaps = 66/1310 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLAL+GKLDSSLKV+G+VTYNGH M EFVPQRTA YISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIG 239
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMK------------- 107
EMTVRETLAFSARCQGVG RYDML EL+RREKAA IKPDPDIDV+MK
Sbjct: 240 EMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVL 299
Query: 108 ----AVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPA 163
AVATEGQ+ NVITDY LK+LGL+ CAD LVGD+MIRGISGGQ+KRVTTGEM+VGP+
Sbjct: 300 IGLMAVATEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPS 359
Query: 164 LAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223
A+FMDEISTGLDSSTT+QIVN LRQ IHI + TA+ISLLQPAPETY+LFDDIILLSD Q
Sbjct: 360 KALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQ 419
Query: 224 IVYQGPRELVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFA 283
IVYQGPRE VL+FFESMGF+CP+RKGVADFLQEVTS+KDQQQYWA K+ PY F+TV+EFA
Sbjct: 420 IVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFA 479
Query: 284 EAFKSFHVGQKLADELRIPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFV 343
EAF+SFH+G+KL EL PFDK++SH AAL + YGV K+ELL AC SRE+LLMKRNSFV
Sbjct: 480 EAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFV 539
Query: 344 YIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVK 403
YIFKL Q+ I A ++MT+F RT+M K+S DG +Y G +FF +V++MFNG +E++MTI K
Sbjct: 540 YIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAK 599
Query: 404 IPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFL 463
+PVFYKQR L F+P WAYALP+WILKIPI+FVEV VWVF+SYYVIG+DPN GR FKQY L
Sbjct: 600 LPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLL 659
Query: 464 LLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCS 523
L+ VNQMA ALFRFIAA GRNM+VANTFG+ +LL+LFALGGF+LSRE++KKWWIWGYW S
Sbjct: 660 LVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSS 719
Query: 524 PLMYAQNAIVANEFLGHSWRKFTP-DSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVL 582
PLMYAQNAIV NEFLG SW K + DS E LGV VLKSRGFF +AYWYW+G GAL GF+L
Sbjct: 720 PLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFIL 779
Query: 583 LLHIAFTLALTFLNRGYLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLG 642
+ + +T+ALT+LN F+KPQAVITE+SE ++K G +ELS+
Sbjct: 780 VFNFCYTVALTYLN--------------AFEKPQAVITEESE----NSKTGGKIELSSHR 821
Query: 643 SSSSLTTRSESGGDIWGRNSSSQSLSM-TEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYS 701
S T S + GR+ SS S S+ EA + K+GMVLPF+P S+ F+++ YS
Sbjct: 822 RGSIDQTASTERREEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYS 881
Query: 702 VDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 761
VDMP+EMK QGVLED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 882 VDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 941
Query: 762 GSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIE 821
G+I ISGYPKK ETFARI GYCEQNDIHSP VT+HESL +SAWLRL +VDS+TRKMFIE
Sbjct: 942 GNINISGYPKKQETFARIXGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIE 1001
Query: 822 EIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
E+MELVEL PL+ SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 1002 EVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1061
Query: 882 IVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD---------------------------- 913
IVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FD
Sbjct: 1062 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYF 1121
Query: 914 EAIPGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTP 973
E I G+ KIK GYNPATWMLEVT ++QE LGVDFT+I+K S+LYR NK LI++LS+P P
Sbjct: 1122 EGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAP 1181
Query: 974 GSKDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGT 1033
GSKDLYFPTQYSQS FTQ +ACLWKQ SYWRNPPYTAVRFFFTT I+L+FGT+FWDLGT
Sbjct: 1182 GSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGT 1241
Query: 1034 KTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQA 1093
K K QDL NAMGSMY AVLF+GVQ SVQP+V+VERT+FYRE AAGMYS P+A AQA
Sbjct: 1242 KRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQA 1301
Query: 1094 AIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHH 1153
+EIPY+F Q+ +YGV+VYAMIGF+WTAAKFFWY+FFMFFTLLYFTFYGMMAVA TPN H
Sbjct: 1302 LVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQH 1361
Query: 1154 IAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE- 1212
IAAIV+ F+GLWN+F+GF++PR RIP+WWRWYYWA P+AWTLYGLV SQFGD++D+ E
Sbjct: 1362 IAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFED 1421
Query: 1213 SGETVKQFLRSYFGYKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
+G+TV+Q+L YFG++HDFLGVVA V+ GF +F F+FA IK FNFQRR
Sbjct: 1422 TGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1886 bits (4886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 901/1292 (69%), Positives = 1048/1292 (81%), Gaps = 74/1292 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLAL+GKLD +LKVSGRVTYNGH + EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG+RYDML EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD +VGDEM+RGISGGQ+KRVTTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV+ LR +HI + TAVISLLQPAPETY+LFDDIIL+SDGQ+VY GPRE VL+FFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP+RKGVADFLQEVTSKKDQ QYW ++ PYRF+TV +FAEAF+SFH+G KL +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFD+++SH AAL K YG+ K+ELLKA FSRE+LLMKRNSFVY+FKL Q+ I ALV MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LF RT+M +++ D GVYAG +FF ++ VMFNG AEISMTI K+PVFYKQR+L F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YA+P+WILKIP++ VEV VWVF++YYVIG+DPN GRFFKQY +LL V+QMA LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG A++ + ALGGF+LS+ DIK WWIWGYW SPLMY QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW T + LGV+ L+SR FF D+YWYWLGLGAL GFV L ++ F LAL FL
Sbjct: 720 SWHNATHN----LGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLG---- 771
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
FDKPQA ITED +E GT+ + ++ G
Sbjct: 772 ----------PFDKPQATITEDESSNE------GTL----------------ADIELPGI 799
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
SS + S+ E++ G KK+GMVLPFEPHS+ FDEV YSVDMPQEMK QGV ED+LVL
Sbjct: 800 ESSGRGDSLVESSHG----KKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVL 855
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GSIKISGYPKK ETFARIS
Sbjct: 856 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARIS 915
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP VTV+ESL +SAWLRL VDS+TRKMFIEE+MELVELNP+R SLVGLP
Sbjct: 916 GYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLP 975
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 976 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1035
Query: 901 IHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FDE +I G+ KIK+GYNPATWM
Sbjct: 1036 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWM 1095
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEVTA +QE++LGVDFTD++K S+LYR NK LI++L +P PGSKDL+FPTQYSQS Q
Sbjct: 1096 LEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQC 1155
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
ACLWKQ WSYWRNPPYTAVRFFFTT I+LMFGT+FWDLG K DL NA+GSMY AV
Sbjct: 1156 QACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAV 1215
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
LF+GVQ SVQP+V++ERT+FYRE AAGMYS P+A AQ +E+PY+F+Q+ YGV+VY
Sbjct: 1216 LFLGVQNASSVQPVVAIERTVFYREKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVY 1275
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AMIGF+WTA KFFWY+FFM+FTLLY+TFYGMM V +TPNHHIA+IV+ F+ +WN+F+GF
Sbjct: 1276 AMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGF 1335
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKL--ESGETVKQFLRSYFGYKHD 1230
++ RP IP+WWRWYYWA P+AWT+YGLV SQFGDL + + E + VK FL Y+G KHD
Sbjct: 1336 VVTRPSIPVWWRWYYWACPVAWTIYGLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHD 1395
Query: 1231 FLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
F+GV AVVVAG A +F +FA+ IK FNFQ+R
Sbjct: 1396 FIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053414|ref|XP_002297807.1| predicted protein [Populus trichocarpa] gi|222845065|gb|EEE82612.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1885 bits (4883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1290 (70%), Positives = 1048/1290 (81%), Gaps = 68/1290 (5%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+TLLLGPP+SGKTT LLALAGKLD SLK+SGRVTYNGH M EFVPQRTAAYISQHD HIG
Sbjct: 159 LTLLLGPPSSGKTTLLLALAGKLDPSLKLSGRVTYNGHEMNEFVPQRTAAYISQHDLHIG 218
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRETLAFSARCQGVG ++ML EL+RREK A I PDPD+DV+MKA AT+ +EANV T
Sbjct: 219 EMTVRETLAFSARCQGVGYLHEMLAELSRREKEANIMPDPDVDVFMKAAATQAEEANVST 278
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGD MIRGISGGQ+KRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 279 DYVLKILGLEVCADTMVGDGMIRGISGGQRKRVTTGEMLVGPSRALFMDEISTGLDSSTT 338
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LRQ +HI + TAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ V EFFE M
Sbjct: 339 YQIVNSLRQTVHILNCTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRDDVHEFFEHM 398
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKGVADFLQEVTS+KDQ+QYWA K+ PY+F+TV EFAEAF+S VG+++ +EL
Sbjct: 399 GFKCPERKGVADFLQEVTSRKDQEQYWARKDQPYKFVTVNEFAEAFQSVSVGRRIIEELS 458
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
IPFDK+++H AAL K YG GK +LLKA FSRE+LLMKRNSFVYIF++ Q+ I A+++MT
Sbjct: 459 IPFDKTKNHPAALVNKKYGAGKMDLLKANFSREYLLMKRNSFVYIFRISQLTILAIISMT 518
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT M +D+V DGG+Y G +FF + +MFNG AE S TI K+PVFYK R+L FFPP A
Sbjct: 519 LFFRTNMHRDTVMDGGIYTGALFFTVAAIMFNGTAEQSTTIAKLPVFYKHRELLFFPPLA 578
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y++P+W+LKIPISFVEV WVF++YYVIG+DPN RFFK Y +L+ +NQMA ALFRFIAA
Sbjct: 579 YSIPSWVLKIPISFVEVATWVFITYYVIGFDPNIARFFKLYVVLVLINQMASALFRFIAA 638
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG+ LL +FALGGF+LSRE IKKWWIWGYW SPLMY QNAIV NEFLG+
Sbjct: 639 AGRNMIVANTFGSFMLLAIFALGGFVLSREQIKKWWIWGYWISPLMYGQNAIVVNEFLGN 698
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYL 600
SW S EPLG+QVLKSRGFF +AYWYW+G+GA GF+LL ++ F LALTFLN
Sbjct: 699 SWSHIPAGSTEPLGIQVLKSRGFFTEAYWYWIGIGATVGFILLFNLCFVLALTFLN---- 754
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGR 660
FDKPQAVI+ED E DE K ++LS +SS T +E G I
Sbjct: 755 ----------AFDKPQAVISEDPESDESARKTERAIQLSN--HASSHRTNTEGGVGI--- 799
Query: 661 NSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVL 720
S S +EA G V +K+GMVLPFEP S+ FD+V YSVDMPQEMK+QGV+ED+LVL
Sbjct: 800 -----SRSSSEAIGRVSNNRKKGMVLPFEPLSITFDDVIYSVDMPQEMKIQGVVEDRLVL 854
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
LNGV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G IKISGYPKK +TFARIS
Sbjct: 855 LNGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKKQQTFARIS 914
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GYCEQNDIHSP VTV+ESL +SAWLRL EVDSE+RKMFIEE+M+LVELNPLR +LVGLP
Sbjct: 915 GYCEQNDIHSPQVTVYESLLYSAWLRLPLEVDSESRKMFIEEVMDLVELNPLRHALVGLP 974
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT
Sbjct: 975 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
Query: 901 IHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATWM 932
IHQPSIDIFE+FDE AI G+ KI++GYNPATWM
Sbjct: 1035 IHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSTHLIKYFEAIEGVGKIRDGYNPATWM 1094
Query: 933 LEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQF 992
LEV++++QE+AL VDF++I+K S+L+R NKALI LS P PGS DL FPT+YS S FTQ
Sbjct: 1095 LEVSSSAQEMALEVDFSNIYKNSDLFRRNKALIAGLSTPAPGSTDLCFPTKYSTSFFTQC 1154
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAV 1052
+ACLWKQHWSYWRNPPYTAVRF FTT I+LMFGT+FWDLG+K
Sbjct: 1155 MACLWKQHWSYWRNPPYTAVRFLFTTFIALMFGTMFWDLGSKF----------------C 1198
Query: 1053 LFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112
FIGVQ SVQP+V+VERT+FYRE AAGMYS P+A AQ IE+PYIF+Q+S YG +VY
Sbjct: 1199 FFIGVQNASSVQPVVAVERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQASAYGFIVY 1258
Query: 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGF 1172
AMIGF+WT AKFFWY+FFM+FTLLYFTFYGMMAVA+TPNHHIAAIVS+ F+G+WN+F+GF
Sbjct: 1259 AMIGFEWTVAKFFWYLFFMYFTLLYFTFYGMMAVAITPNHHIAAIVSSAFYGIWNLFSGF 1318
Query: 1173 LIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLESGETVKQFLRSYFGYKHDFL 1232
++PRP IPIWWRWYYWA P++W+LYGL+VSQFGD++ L +TVKQF++ YFG+ HDFL
Sbjct: 1319 IVPRPSIPIWWRWYYWACPVSWSLYGLLVSQFGDIQKDLTETQTVKQFVKDYFGFDHDFL 1378
Query: 1233 GVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
GVVA V G+ +F FLFA IK FNFQRR
Sbjct: 1379 GVVAAAVLGWTVLFAFLFAAAIKAFNFQRR 1408
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1262 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.492 | 0.437 | 0.635 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.472 | 0.409 | 0.577 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.472 | 0.410 | 0.574 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.472 | 0.413 | 0.587 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.490 | 0.435 | 0.529 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.472 | 0.420 | 0.556 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.469 | 0.408 | 0.512 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.469 | 0.419 | 0.505 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.472 | 0.417 | 0.502 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.472 | 0.405 | 0.568 | 1.9e-285 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2147 (760.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 406/639 (63%), Positives = 487/639 (76%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
M LLLGPP+SGKTT LLALAGKLD LK +GRVTYNGH M EFVPQRTAAYI Q+D HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRET A++AR QGVG+RYDML ELARREK A IKPDPDID++MKA++T G++ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGL+ CAD +VGD+M+RGISGGQKKRVTTGEM+VGP+ A+FMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIVN LR +HI + TA+ISLLQPAPET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP RKGVADFLQEVTSKKDQ QYWA ++ PYRFI V+EFAEAF+SFHVG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDK++SH AAL K YGVG +EL+K FSRE+LLMKRNSFVY FK Q+ + A +TMT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LFFRT+M+K + DG +Y G +FF ++++MFNG +E+SMTI K+PVFYKQRDL F+P W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y+LP W+LKIPI IG+DPN GR FKQY LL+ +NQMA ALF+ +AA
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GRNM+VANTFG SR+DIKKWWIWGYW SP+MY QNAI+ANEF GH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLNRGYL 600
SW + +S+E LGV LKSRGF P AYWYW + FTLALTFLN
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLN---- 777
Query: 601 YHLHFNYFKSKFDKPQAVITEDSERDE---QDTKIRGTV 636
KPQAVI E+ DE Q + G V
Sbjct: 778 ----------SLGKPQAVIAEEPASDETELQSARSEGVV 806
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1864 (661.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 346/599 (57%), Positives = 436/599 (72%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT L ALAGKLD +L++SGR+TY GH EFVPQ+T AYISQHD H G
Sbjct: 203 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 262
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRE L FS RC GVG+RY ++ EL+RREK GIKPDP ID +MK++A GQE +++T
Sbjct: 263 EMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVT 322
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CADIL GD M RGISGGQKKR+TTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 323 DYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTT 382
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQI +RQ +HI+ T +ISLLQPAPET+ LFDDIILLS+GQIVYQGPR+ VLEFFE
Sbjct: 383 FQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYF 442
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP+RKGVADFLQEVTSKKDQ+QYW +E PY +++V +F+ F +FH GQKL E R
Sbjct: 443 GFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFR 502
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+P+DK+++H AAL + YG+ EL KACF RE+LLMKRNSFVY+FK VQI I +L+TMT
Sbjct: 503 VPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMT 562
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
++ RT+M +V DG + G MFF+++ VMFNG AE++ T++++PVFYKQRD F+PPWA
Sbjct: 563 VYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWA 622
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
+ALP W+LKIP+ IG+ P+A RFF+Q VNQMA +LFRF+ A
Sbjct: 623 FALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 682
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR V++N+ GT +++DI+ W W Y+ SP+MY Q AIV NEFL
Sbjct: 683 IGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDE 742
Query: 541 SWRKFTPDSN---EPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W D+ + +G +LKSRGFF + YW+W ++ + LAL +LN
Sbjct: 743 RWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLN 801
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1846 (654.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 344/599 (57%), Positives = 438/599 (73%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT L ALAGKLD +L++SGR+TY GH EFVPQ+T AYISQHD H G
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRE+L FS RC GVGTRY +L EL+RRE+ AGIKPDP+ID +MK++A GQE +++T
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVT 320
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CAD LVGD M RGISGGQ+KR+TTGEM+VGPA A+FMDEISTGLDSSTT
Sbjct: 321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTT 380
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQI +RQ +HI T VISLLQPAPET+ LFDDIILLS+GQIVYQG R+ VLEFFE M
Sbjct: 381 FQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYM 440
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKG+ADFLQEVTSKKDQ+QYW +E PY +++V +F+ F SFH GQ+LA E R
Sbjct: 441 GFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFR 500
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+P+DK+++H AAL + YG+ ++L KACF RE+LLMKRNSFVY+FK VQI I +L+ MT
Sbjct: 501 VPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMT 560
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
++FRT+M +V DG + G +FF+++ +MFNG AE++ T++++PVF+KQRD F+PPWA
Sbjct: 561 VYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWA 620
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
+ALP ++LKIP+ IG+ P+A RFF+Q VNQMA +LFRF+ A
Sbjct: 621 FALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 680
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR V+AN+ GT S++DI W W Y+ SP+MY Q A+V NEFL
Sbjct: 681 LGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDE 740
Query: 541 SWRKFTPDSN---EPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W D+ + +G +LKSRGFF + YW+W + + +AL +LN
Sbjct: 741 RWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLN 799
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 351/597 (58%), Positives = 430/597 (72%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD SL VSG VTYNG+ + EFVP +T+AYISQ+D H+G
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
MTV+ETL FSARCQGVGTRYD+L ELARREK AGI P+ D+D++MKA A +G ++++IT
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD C D +VGD+M+RGISGGQKKRVTTGEM+VGP +FMDEISTGLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV CL+Q +H+ T +ISLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEFFES
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKG ADFLQEVTSKKDQ+QYW PYR+I V EFA +FK FHVG KL++EL
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+P+DKS+SH+AAL Y + K ELLK+C+ +E++LMKRNSF Y+FK VQI I A +T T
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
L+ RT+M + D +Y G + FA+++ MFNG AE++MTI ++PVFYKQRDL F PPW
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y LPT++L IPI IGY P+A RFFKQ+ ++ + QMA +FRFIA+
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
T R M +ANT G R +I WW W YW SPL YA NAI NE
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 541 SW-RKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W K + +S LG VL F D WYW + FTLALT+L+
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLD 793
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1791 (635.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 336/635 (52%), Positives = 447/635 (70%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+TLLLGPP+SGKTT LLALAG+L ++L+ SG++TYNG+++ E + RT+AY+SQ D H+
Sbjct: 163 LTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVA 222
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVR+TL F+ RCQGVG +YDML+ELARREK AGI PD D+D++MK++A G E +++
Sbjct: 223 EMTVRQTLEFAGRCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVV 282
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
+Y +K+LGLD CAD LVGDEMI+GISGGQKKR+TTGE++VGPA +FMDEIS GLDSSTT
Sbjct: 283 EYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
QI+ +R + H T VISLLQP+PETY LFDD+IL+S+GQI+YQGPR+ VL+FF S+
Sbjct: 343 HQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSL 402
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF CP RK VADFLQEVTSKKDQQQYW+ PYR++ +FAEAF+S+ G+KLA +L
Sbjct: 403 GFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLE 462
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDK +H AAL+ YGV K ELLK F+ + LMK+N+F+Y+FK VQ+ + AL+TMT
Sbjct: 463 VPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMT 522
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RT M +++ DG +Y G ++F++VI++FNG+ E+ M + K+PV YK RDL F+P WA
Sbjct: 523 VFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWA 582
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
Y LP+W+L IP IGYDP RF +Q+ L +++QM+ LFR + +
Sbjct: 583 YTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGS 642
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
GR+M+VANTFG+ SR+ I WWIWGYW SPLMYAQNA NEFLGH
Sbjct: 643 LGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGH 702
Query: 541 SWRKFTPD-SNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLNRGY 599
+W+K + +++ LG+ +LK R F YWYW +I FTL L LN
Sbjct: 703 NWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPW- 761
Query: 600 LYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRG 634
KF QAV++ + E DE++ K +G
Sbjct: 762 ----------GKF---QAVVSRE-ELDEREKKRKG 782
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1756 (623.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 332/597 (55%), Positives = 425/597 (71%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD SLKV+GRVTYNGH + EFVPQ+T+AYISQ+D H+G
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
MTV+ETL FSARCQGVGTRYD+L EL RREK AGI P+P++D++MK++A ++++IT
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLIT 294
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY L++LGLD C D +VGDEMIRGISGGQKKRVTTGEM+VGP +FMDEISTGLDSSTT
Sbjct: 295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 354
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIV CL++ + T ++SLLQPAPET+ LFDDIILLS+GQIVYQGPR+ VL FFE+
Sbjct: 355 YQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETC 414
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP RKG ADFLQEVTS+KDQ+QYWA + PY +I+V EF++ F++FHVG L +L
Sbjct: 415 GFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLS 474
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+P+D+ +SH A+L K + V K +L K C+ RE LLMKRN+F YI K VQI I AL+ T
Sbjct: 475 VPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAST 534
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
++ RT+M + +DG VY G + F++++ MFNG+AE+++ I ++PVFYKQRDL F PPW
Sbjct: 535 VYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 594
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
++LPT++L IPI IG+ P RF K ++ QMA +FRFIAA
Sbjct: 595 FSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAA 654
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
T R+M++ANT G R +I KWW W YW SP+ Y +A+ NE L
Sbjct: 655 TCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP 714
Query: 541 SW-RKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W + + D++ LG+ VL+ F D WYW +I TLALTFLN
Sbjct: 715 RWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLN 771
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1614 (573.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 305/595 (51%), Positives = 412/595 (69%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+TLLLGPP+ GKTT L AL+G L+++LK SG ++YNGH + EFVPQ+T+AYISQ+D HI
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMTVRET+ FSARCQGVG+R D++ME+++REK GI PD ++D YMKA++ EG + ++ T
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CA+IL+GD M RGISGGQKKR+TT EM+VGP A+FMDEI+ GLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV L+Q HI+S T ++SLLQPAPE+Y+LFDDI+L++ G+IVY GPR VL FFE
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP+RKGVADFLQEV SKKDQ QYW H+++PY F++V+ ++ FK +G+K+ D L
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
P+D+S+SH+ AL+ VY + EL AC SRE+LLMKRN FVYIFK Q+ + A +TMT
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RT+M D + G Y +FFA++I++ +G+ E+SMT ++ VFYKQ+ L F+P WA
Sbjct: 562 VFIRTRMGID-IIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWA 620
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YA+P +LK+P+ IGY P A RFFKQ+ LL AV+ + ++FR +AA
Sbjct: 621 YAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAA 680
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
+ +V + T G+ + W WG+W +PL Y + + NEFL
Sbjct: 681 IFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAP 740
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFL 595
W + P+ N LG +L++RG + Y YW +I FTLALTFL
Sbjct: 741 RWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFL 794
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 301/595 (50%), Positives = 408/595 (68%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+TLLLGPP GKTT L AL+G L+++LK G ++YNGH + E VPQ+T+AYISQHD HI
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIA 226
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
EMT RET+ FSARCQGVG+R D++ME+++REK GI PDP+ID YMKA++ +G + ++ T
Sbjct: 227 EMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQT 286
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD CA+ LVG+ M RGISGGQKKR+TT EM+VGP A+FMDEI+ GLDSST
Sbjct: 287 DYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 346
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQI+ L+Q HI + T +SLLQPAPE+Y+LFDDI+L+++G+IVY GPR+ VL+FFE
Sbjct: 347 FQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEEC 406
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GF+CP+RKGVADFLQEV SKKDQ QYW H+ +P+ F++V ++ FK +G+K+ + L
Sbjct: 407 GFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALS 466
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
P+D S++H+ AL+ VY + K EL +AC SREFLLMKRN FVY+FK Q+ + A++TMT
Sbjct: 467 KPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMT 526
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RT+M D + G Y +FFA V+++ +G E+SMT+ ++ VFYKQ+ L F+P WA
Sbjct: 527 VFIRTRMDID-IIHGNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWA 585
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
YA+P +LKIP+ IGY P RFF+Q+ +L AV+ + ++FR IAA
Sbjct: 586 YAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAA 645
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
+ V A T G+ D+ W WG+W +P+ YA+ + NEFL
Sbjct: 646 IFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAP 705
Query: 541 SWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFL 595
W+K P +N LG +L+SRG D Y YW + FTLAL+FL
Sbjct: 706 RWQKMQP-TNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFL 759
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1585 (563.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 300/597 (50%), Positives = 398/597 (66%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP SGK+T LLALAGKLD SLK +G +TYNG N+ +F +RT+AYISQ DNHI
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 EMTVRETLAFSARCQGVGTRYDMLM-ELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
E+TVRETL F+ARCQG + M +L R EK GI+P +ID +MKA + +G++ +V
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
TDY LKVLGLD C+D +VG++M+RG+SGGQ+KRVTTGEM VGP +FMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 239
TFQIV C+R +H+ T +++LLQPAPET++LFDD+ILLS+G +VYQGPRE V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 240 MGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADEL 299
+GF+ P RKGVADFLQEVTSKKDQ QYWA PY+FI V + A AF++ G +L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 300 RIPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTM 359
PFDK + +AL + + + E LK CF RE LL+KR+ F+Y F+ Q+ LVT
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 360 TLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPW 419
T+F +T++ S G Y +FF +V +MFNG++E+ + I ++PVFYKQRD F P W
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 420 AYALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIA 479
++++ +W+L++P +G P+AGRFF+ LL +V+QMA LFR +A
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 480 ATGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLG 539
+ R+MV+ANTFG+ + DIK WW+WG+W SPL Y Q AI NEF
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 540 HSWRKFTPDSNEPLGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W + S+ +G+ +LK R F + YWYW + TLAL +LN
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLN 784
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1809 (641.9 bits), Expect = 1.9e-285, Sum P(2) = 1.9e-285
Identities = 340/598 (56%), Positives = 429/598 (71%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD SL+VSG +TYNG+ + EFVP++T+AYISQ+D H+G
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
MTV+ETL FSARCQGVGTRYD+L ELARREK AGI P+ D+D++MKA A +G + +++T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD C D +VGD+M+RGISGGQKKRVTTGEM+VGP +FMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
FQIV CL+Q +H+N T ++SLLQPAPET++LFDDIIL+S+GQIVYQGPR+ +LEFFES
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKG ADFLQEVTSKKDQ+QYW + PY +I V EFA +KSFHVG K+++EL
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDKS+ H+AAL Y V KRELLK+C+ +E+LLM+RN+F Y+FK VQI I A +T T
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
LF RT+M + D +Y G + F ++I MFNG+AE++M + ++PVFYKQRDL F+P W
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 YALPTWILKIPIXXXXXXXXXXXXXXXIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
++LPT++L IP IG+ P+A RFFKQ+ L+ + QMA +LFR IA+
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 TGRNMVVANTFGTXXXXXXXXXXXXXXSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
R M++ANT G + I WW W YW SPL YA N +V NE
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 SWRKFTPDSNEP--LGVQVLKSRGFFPDAYWYWXXXXXXXXXXXXXHIAFTLALTFLN 596
W SN LG VL + + WYW +I FTLALT+LN
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLN 796
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5909 | 0.9714 | 0.8391 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6877 | 0.9778 | 0.8469 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6700 | 0.9611 | 0.8524 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6630 | 0.9722 | 0.8514 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6945 | 0.9651 | 0.8493 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6816 | 0.9627 | 0.8461 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6870 | 0.9778 | 0.8469 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5228 | 0.9643 | 0.8410 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1262 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-91 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-85 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-71 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-62 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-51 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-42 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-38 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-36 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-31 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-29 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-27 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-25 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 7e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-19 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-19 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 9e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-15 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-14 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-13 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-12 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-12 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-12 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-12 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-10 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-10 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-10 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-09 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-09 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-08 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-08 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-08 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-07 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-07 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-06 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-06 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-06 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-05 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-05 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-05 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-05 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-05 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-04 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-04 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-04 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.001 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.001 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.002 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.002 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 0.003 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.003 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.003 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 0.004 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1841 bits (4770), Expect = 0.0
Identities = 777/1296 (59%), Positives = 967/1296 (74%), Gaps = 52/1296 (4%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
MTLLLGPP+SGKTT LLALAGKLD SLKVSG +TYNG+ + EFVP++T+AYISQ+D H+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
MTV+ETL FSARCQGVGTRYD+L ELARREK AGI P+ ++D++MKA A EG ++++IT
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
DY LK+LGLD C D +VGDEMIRGISGGQKKRVTTGEM+VGP +FMDEISTGLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240
+QIV CL+Q +H+ T ++SLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEFFES
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELR 300
GFKCP+RKG ADFLQEVTSKKDQ+QYWA + PYR+I+V EFAE FKSFHVG +L +EL
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 IPFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMT 360
+PFDKSQSH+AAL Y V K ELLKAC+ +E+LLMKRN+FVY+FK VQI I A + T
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 LFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWA 420
+F RT+M + DG +Y G + F+++I MFNG+AE+++ I ++PVFYKQRDL F PPW
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 421 YALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480
+ LPT++L IPIS +E VVWV ++YY IG+ P A RFFKQ L+ + QMA +FR IA+
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGH 540
R M++ANT G + LL++F LGGF+L + +I WW W YW SPL Y NA+ NE
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 541 SW-RKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGY 599
W K D++ LG VL F D WYW+G+GAL GF +L ++ FTLALT+LN
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP-- 790
Query: 600 LYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWG 659
K QA+I+E++ + + + LS+ +++ + + G
Sbjct: 791 ------------LGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEG 838
Query: 660 RNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLV 719
+ + S EAA GV KRGMVLPF P ++ FD+V Y VDMP EMK QGV ED+L
Sbjct: 839 LSKNRDSSL--EAANGV--APKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQ 894
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
LL V+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISG+PKK ETFARI
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
SGYCEQNDIHSP VTV ESL +SA+LRL EV E + MF++E+MELVEL+ L+ ++VGL
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
PGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074
Query: 900 TIHQPSIDIFESFDE----------------------------AIPGIEKIKNGYNPATW 931
TIHQPSIDIFE+FDE AIPG+ KIK YNPATW
Sbjct: 1075 TIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134
Query: 932 MLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQ 991
MLEV++ + EV LG+DF + +K S LY+ NKAL+++LS P PG+ DLYF TQYSQS + Q
Sbjct: 1135 MLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQ 1194
Query: 992 FIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIA 1051
F +CLWKQ W+YWR+P Y VRFFFT +LM GT+FW +GTK DL +G+MY A
Sbjct: 1195 FKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAA 1254
Query: 1052 VLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLV 1111
VLF+G+ C +VQP+V+VERT+FYRE AAGMYS P+A+AQ EIPY+ IQ++ Y ++V
Sbjct: 1255 VLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIV 1314
Query: 1112 YAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTG 1171
YAM+ F+WTAAKFFW+ F FF+ LYFT+YGMM V++TPN +AAI + F+GL+N+F+G
Sbjct: 1315 YAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSG 1374
Query: 1172 FLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE-----SGETVKQFLRSYFG 1226
F IPRP+IP WW WYYW P+AWT+YGL+VSQ+GD+ED ++ T+K +++ ++G
Sbjct: 1375 FFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYG 1434
Query: 1227 YKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262
Y DF+G VA V+ GF F F+FA I+ NFQ R
Sbjct: 1435 YDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1048 bits (2713), Expect = 0.0
Identities = 388/1395 (27%), Positives = 602/1395 (43%), Gaps = 227/1395 (16%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLK-VSGRVTYNGHNMGEFVPQRTA--AYISQHDN 57
+T++LG P SG +T L +A D V G +TY+G E Y ++ D
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
H +TV ETL F+ARC+ R D + +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH------------------------- 183
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
I D Y+ GL + + VG++ +RG+SGG++KRV+ E +G A D + GLDS
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237
+T + + L+ + +I T ++++ Q + + Y LFD +I+L +G +Y GP + ++F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 ESMGFKCPQRKGVADFLQEVTSKKDQQQYWA--HKEIPYRFITVQEFAEAFKSFHVGQKL 295
E MGFKCP R+ ADFL +TS ++Q K++P T QEF +++ +L
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKVP---RTPQEFETYWRNSPEYAQL 358
Query: 296 ADELRIPFDK----------SQSH-----RAALAKKVYGVGKRELLKACFSREFLLMKRN 340
E+ D+ +SH + Y V +K C +R FL MK N
Sbjct: 359 MKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418
Query: 341 SFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMT 400
+F + I AL+ ++F+ G +FFAI+ F+ EI+
Sbjct: 419 PSFTLFMVFGNIIMALILSSVFYNLPKNTSDFY---SRGGALFFAILFNAFSSLLEIASM 475
Query: 401 IVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQ 460
P+ K R + P A A+ + I +IP +E VV+ + Y+++ + AGRFF
Sbjct: 476 YEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535
Query: 461 YFLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGY 520
+L LFR I A + + A T + LL L GF + R + W W Y
Sbjct: 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIY 595
Query: 521 WCSPLMYAQNAIVANEFLGHSWRKF--------------TPDSNEPLGVQVLKSRGFF-- 564
+ +PL YA +++ NEF G R+F +N+ V + +
Sbjct: 596 YVNPLAYAFESLMVNEFHG---RRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652
Query: 565 PDAY----------WYWLGLGALFGFVLLLHIAFTLALTFLNRGYLYHLHFNYFKSKFDK 614
D Y W G + GF + F Y+ FN + K
Sbjct: 653 GDDYLKLSFQYYNSHKWRNFGIIIGFTV-----------FFFFVYILLTEFNKGAKQ--K 699
Query: 615 PQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAG 674
+ ++ + K G S DI
Sbjct: 700 GEILVFRRGS--LKRAKKAGETSASNKN-------------DI----------------- 727
Query: 675 GVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKL-----------QGVLEDKLVLLNG 723
+ G VL + D+V DM +E + ++K V+LN
Sbjct: 728 ------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNN 781
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYC 783
V G +PG LTALMG SGAGKTTL++VLA R T G ITG ++ +F R GY
Sbjct: 782 VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYV 841
Query: 784 EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
+Q D+H P TV ESL FSA+LR V + ++EE+++L+E+ ++VG+PG
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE- 900
Query: 844 GLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIH
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
Query: 903 QPSIDIFESFDE---------------------------AIPGIEKIKNGYNPATWMLEV 935
QPS +FE FD G K NPA WMLEV
Sbjct: 961 QPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEV 1020
Query: 936 TAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPT---QYSQSAFTQF 992
A+ D+ ++++ S Y+ K ++ L ++D P +Y+ S + QF
Sbjct: 1021 IGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQF 1080
Query: 993 IACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKN-QDLFNAMGSMYIA 1051
LW+ YWR P Y +FF T +L G F+ K G + Q L N M ++++A
Sbjct: 1081 KLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFF----KVGTSLQGLQNQMFAVFMA 1136
Query: 1052 VLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLV 1111
+ + P V+ RE + +S + AQ +EIPY + +++ +
Sbjct: 1137 TVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIW 1196
Query: 1112 YAMIGFDWTAAK---------FFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLF 1162
Y +GF W A+K FW + MFF LYF+ G M ++ PN AA++++L
Sbjct: 1197 YYPVGFYWNASKTGQVHERGVLFWLLSTMFF--LYFSTLGQMVISFNPNADNAAVLASLL 1254
Query: 1163 FGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE---------- 1212
F + F G L P R+P +W + Y P + + L+ + D+ +
Sbjct: 1255 FTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPP 1314
Query: 1213 SGETVKQFLRSY---------------------FGYKHDFLGVVAVVVAGFAAVFG---- 1247
SG+T ++++ Y + Y +DFL ++ +G FG
Sbjct: 1315 SGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIA 1374
Query: 1248 FLFALGIKQFNFQRR 1262
F+F I F
Sbjct: 1375 FIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 3e-91
Identities = 104/225 (46%), Positives = 129/225 (57%), Gaps = 47/225 (20%)
Query: 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 749
L + + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 750 VLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP 809
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 810 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 870 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 4e-85
Identities = 157/526 (29%), Positives = 259/526 (49%), Gaps = 44/526 (8%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSIKISGYPKKHETFAR 778
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +GS+ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
IS Y +Q+D+ P +TV E L F A LR+ V + ++ ++E+++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 839 LPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 898 VCTIHQPSIDIFESFD-----------------EAIPGIEKIK----NGYNPATWMLEV- 935
+CTIHQPS ++FE FD +A+P + YNPA + ++V
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279
Query: 936 ------TAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPG---SKDLYFPTQYSQ 986
S+E + D F S++ R S G + Y+
Sbjct: 280 AVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337
Query: 987 SAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMG 1046
S +TQF A L + S R+P VR T + +++ G ++ G Q N G
Sbjct: 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ---NING 394
Query: 1047 SMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSL 1106
++++ + + Q F V + + E +F RE+ +G+Y + LA+ E+P I +L
Sbjct: 395 ALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPAL 454
Query: 1107 YGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLW 1166
+ + Y MIG A F ++F + T +G + + +A V F +
Sbjct: 455 FTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPF 514
Query: 1167 NVFTGFLIPRPRIPIWWRWYYWADPMAWTLY---GLVVSQFGDLED 1209
+F GF I IP++++W + ++W Y GL+++Q+ D+++
Sbjct: 515 LLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 9e-71
Identities = 92/223 (41%), Positives = 128/223 (57%), Gaps = 44/223 (19%)
Query: 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 751
+L F +T +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 752 AGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEV 811
AGR+TG ++G + I+G P +F +I GY Q+DI P +TV E+L F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 812 DSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 872 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-62
Identities = 134/606 (22%), Positives = 256/606 (42%), Gaps = 69/606 (11%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
++G +GKTT + ALA + +K SG V NG + + +AY+ Q D I +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
VRE L F A + M + ++EK + V+
Sbjct: 116 VREHLMFQAHLR-------MPRRVTKKEKRERVD-------------------EVLQA-- 147
Query: 124 LKVLGLDNCADILVGDE-MIRGISGGQKKRVTTG-EMMVGPALAMFMDEISTGLDSSTTF 181
LGL CA+ +G ++G+SGG++KR+ E++ P L +F DE ++GLDS +
Sbjct: 148 ---LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAY 203
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMG 241
+V L+ + +T + ++ QP+ E + LFD IIL+++G++ Y G + + FF +G
Sbjct: 204 SVVQVLK-GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262
Query: 242 FKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRI 301
CP+ ADF +V + IP +E E + ++ +
Sbjct: 263 HPCPENYNPADFYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDMLV 311
Query: 302 PFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFK--------LVQIAI 353
+ L K + + +++ + L+KR S++ + + L+Q +
Sbjct: 312 NTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMM 370
Query: 354 TALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMF-NGYAEISMTIVKIPVFYKQRD 412
TA++ ++ + + V + G +F + + F N + I++ ++PVF ++
Sbjct: 371 TAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETR 427
Query: 413 LQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMAC 472
+ AY L I ++P+ + ++ ++Y++IG A F FL+ V +A
Sbjct: 428 SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVAT 487
Query: 473 ALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAI 532
+ I+ + +A T G ++ GGF ++ + I ++ W + S Y +
Sbjct: 488 SFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGL 547
Query: 533 VANEFLGHSWRKFTPDSNEPL------GVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHI 586
+ N++ S G +L++ F +L L L + +
Sbjct: 548 LINQWSDV--DNIECTSANTTGPCPSSGEVILETLSF--RNADLYLDLIGLVILIFFFRL 603
Query: 587 AFTLAL 592
AL
Sbjct: 604 LAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 4e-51
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGYPKKHETFAR 778
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
Y Q+DI P +TV E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 899 CTIHQPSIDIFESFDEAI 916
TIHQP D+F FD +
Sbjct: 198 LTIHQPRSDLFRLFDRIL 215
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 1e-50
Identities = 138/555 (24%), Positives = 246/555 (44%), Gaps = 88/555 (15%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGSIKISGYP----KK 772
+L + G +PG LT ++G G+G +TL+ +A T G+ + G I G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKK 134
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRL-APEVDSETRKMFIEEIMELVE--- 828
H + Y + D+H P +TV E+L F+A + D +R+ + + I ++
Sbjct: 135 HYRGDVV--YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 829 -LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA---AIVM 884
L+ R + VG V G+S +RKR++IA + I D T GLD+ A +
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 885 RTVRNTVDTGRTVVCTIHQPSIDIFESFD-----------------EAIPGIEKIKNGY- 926
+T N +DT T + I+Q S D +E FD +A EK+ G+
Sbjct: 253 KTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKM--GFK 308
Query: 927 -----NPATWMLEVTAASQEVALG----------VDFTDIFKRSELYRGNKALIEDLSKP 971
A ++ +T+ ++ +F ++ S Y L++++ +
Sbjct: 309 CPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLMKEIDEY 365
Query: 972 -----TPGSKDLYFPTQ-------------YSQSAFTQFIACLWKQHWSYWRNPPYTAVR 1013
+K+ Y + Y+ S Q CL + NP +T
Sbjct: 366 LDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425
Query: 1014 FFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSV--ER 1071
F +++L+ ++F++L T D ++ G+++ A+LF S+ I S+ R
Sbjct: 426 VFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFS---SLLEIASMYEAR 479
Query: 1072 TIFYRESAAGMYSGQPWALAQAAI--EIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIF 1129
I + +Y P A A A+I EIP+ I+S ++ +++Y M+ F TA +FF+Y+
Sbjct: 480 PIVEKHRKYALY--HPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537
Query: 1130 FMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWA 1189
+F L + A+T A + + +++TGF IPRP + W +W Y+
Sbjct: 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYV 597
Query: 1190 DPMAWTLYGLVVSQF 1204
+P+A+ L+V++F
Sbjct: 598 NPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 2e-50
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 7/216 (3%)
Query: 990 TQFIACLWKQHWSYWRNPPYT-AVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSM 1048
TQ A L ++ WR+P R L++L+FGT+F +L T + N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1049 YIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYG 1108
+ ++LF + P+ ER + RE A+ +YS + LA+ +E+P +Q+ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1109 VLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNV 1168
++VY M+G + +FF ++ + T L + G+ A+ P+ A+ + L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1169 FTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQF 1204
+GF IP +P W +W Y+ +P+ + + L ++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 2e-43
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 324 ELLKACFSREFLLMKRNSFV-YIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVM 382
LKA REFL R+ + +++L+Q + ALV T+F D+ G G++
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 383 FFAIVIVMFNGYAEISMTIVK-IPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWV 441
FF+I+ F+ IS ++ V ++ + P AY L ++++PIS ++ ++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 442 FVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFA 501
+ Y+++G + RFF +LL A L FIAA + A+ G + LL L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 502 LGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEF 537
L GF + + + W W Y+ +PL YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 6e-42
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 12/203 (5%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP--KKH 773
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
R GY Q P +TV E+L F A L + ++E R IEE++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 894 GRTVVCTIHQPSIDIFESFDEAI 916
G + + E D I
Sbjct: 186 GGVTILLSTHILEEAEELCDRVI 208
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 8e-40
Identities = 117/442 (26%), Positives = 209/442 (47%), Gaps = 57/442 (12%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+LNGV+G PG + A++G SG+GK+TL++ LAGR G TG+I + + R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
G+ Q+DI P +TV E+L F + LRL + + + + E ++ + L +++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 900 TIHQPSIDIFESFD-----------------EAIPGIEKIKNGY------NPATWMLEVT 936
++HQPS +++ FD +A+ E + G+ NPA ++L++
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV--GFSPSFPMNPADFLLDLA 319
Query: 937 ---------------------AASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGS 975
AS L + S + N + S S
Sbjct: 320 NGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRS 379
Query: 976 KDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKT 1035
D + F QF + L ++ ++ + +R F +L+ G ++W
Sbjct: 380 SD----RISISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH----- 429
Query: 1036 GKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAI 1095
+D+ + +G ++ +F GV F+ + ER IF +E A+GMY+ + +A+
Sbjct: 430 SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVG 489
Query: 1096 EIPYIFIQSSLYGVLVYAMIGF 1117
++P I +++ + Y M G
Sbjct: 490 DLPMELILPTIFLTVTYWMAGL 511
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-38
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 138 GDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSET 197
G+E +RGISGG++KRV+ E +V A + D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 198 AVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+SL Q + E Y+LFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-36
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 38/229 (16%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ +LG SGKTT L A++G+++ SG++ +NG Q+ AY+ Q D +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+TVRETL ++A + R+ + I+ DV ++
Sbjct: 95 GLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLRD------------ 130
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG-EMMVGPALAMFMDEISTGLDSST 179
A +G +++GISGG+++RV+ +++ P + + +DE ++GLDS T
Sbjct: 131 -----------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-LILDEPTSGLDSFT 178
Query: 180 TFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+V+ L Q N ++++ QP + + LFD I+LLS G+IVY G
Sbjct: 179 ALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-33
Identities = 127/527 (24%), Positives = 240/527 (45%), Gaps = 60/527 (11%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
+LGP SGK+T L ALAG++ + +G + N + + +RT +++Q D +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLT 156
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
VRETL F + L+ L + + QE ++ +
Sbjct: 157 VRETLVFCS-----------LLRLPK--------------------SLTKQEKILVAESV 185
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTG-EMMVGPALAMFMDEISTGLDSSTTFQ 182
+ LGL C + ++G+ IRGISGG++KRV+ EM++ P+L + +DE ++GLD++ ++
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL-LILDEPTSGLDATAAYR 244
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
+V L +T V S+ QP+ Y +FD +++LS+G+ ++ G + +FES+GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 KCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQ-KLADELRI 301
ADFL ++ + Q + +E P Q ++ + + K A E+
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVASYNTLLAPKVKAAIEMSH 360
Query: 302 PFDKSQSHRAALAKKVYGVGKRELLKACFSREFLLMKR-------NSFVYIFKLVQIAIT 354
+ + + K + R + F++ +L++R SF ++ Q+
Sbjct: 361 FPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAA 419
Query: 355 ALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMTIVKIP----VFYKQ 410
AL+ +++ + + V D G++FF I +F G ++ P +F K+
Sbjct: 420 ALLAGLMWWHSDFR--DVQD---RLGLLFF---ISIFWGVFPSFNSVFVFPQERAIFVKE 471
Query: 411 RDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQM 470
R + +Y + + +P+ + +++ V+Y++ G P G F +LL +
Sbjct: 472 RASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531
Query: 471 ACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWI 517
+ L + A + A+T TV +L GGF + + WI
Sbjct: 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWI 578
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 37/205 (18%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSIKISGYPKK 772
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 773 --HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
E + Y + D+H P +TV E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 891 VD-TGRTVVCTIHQPSIDIFESFDE 914
D T +++Q S +I++ FD+
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDK 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 3e-31
Identities = 155/632 (24%), Positives = 265/632 (41%), Gaps = 109/632 (17%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSIKISGYPKKHET 775
KL +L SG +P +T L+G +GKTTL+ LAG+ ++G I +GY
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLR-----------LA-----------PEVD- 812
+ S Y QND+H +TV E+L FSA + LA EVD
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 813 --------SETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 864
+ + ++++ L+ + ++VG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 865 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAIPGIE--- 920
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD+ I E
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 921 ------------------KIKNGYNPATWMLEVTAASQEVALGVD------------FTD 950
K A ++ EVT+ + D F +
Sbjct: 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAE 476
Query: 951 IFKRSELYRGNKALIEDLSKPTPGSKD----LYFPTQYSQSAFTQFIACLWKQHWSYWRN 1006
FK + G + L +LS P S+ L F ++YS AC W + W +
Sbjct: 477 RFKS--FHVGMQ-LENELSVPFDKSQSHKAALVF-SKYSVPKMELLKAC-WDKEWLLMKR 531
Query: 1007 PPYTAVRFFFTT----LISLMFGTLFWDLGTKTGKNQDLFNAMGSMYI-AVLF---IGVQ 1058
A + F T +++ + T+F T +D G++YI A+LF I +
Sbjct: 532 ---NAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED-----GALYIGALLFSMIINMF 583
Query: 1059 YCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFD 1118
F+ ++ +FY++ + + L + IP I+S ++ V+ Y IGF
Sbjct: 584 NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643
Query: 1119 WTAAKFFWYIFFMFFTLLY----FTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGFLI 1174
A++FF + +F F + M + A+V L F L GF++
Sbjct: 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLL----GGFIL 699
Query: 1175 PRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLE--DKLESGETVK--QFLRSYFGYKHD 1230
P+ IP WW W YW P+++ L V++ +K+ S + + + + F D
Sbjct: 700 PKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTD 759
Query: 1231 ----FLGVVAVVVAGFAAVFGFLFALGIKQFN 1258
++GV A++ GF +F LF L + N
Sbjct: 760 KNWYWIGVGALL--GFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP-KKHETFA 777
++ +S G + L+G +GAGKTT + +L G R T +G+ I+GY + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 778 RIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R S GYC Q D +TV E L F A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 897 VVCTIH 902
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET---F 776
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 777 ARISGYCEQNDIHSP---FV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
R G QN P F TV E +AF PE + E R +EE +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 892 DTGRTVVCTIHQPSIDIFESFDEAI 916
G+T++ H + E D I
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-29
Identities = 70/274 (25%), Positives = 121/274 (44%), Gaps = 51/274 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ--RTAAYISQHDNH 58
+ LLGP +GKTT L LAG L + SG + G+++ + + R Y+ Q +
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
E+TVRE L F AR G+ +EA
Sbjct: 90 YPELTVRENLEFFARLYGLS----------------------------------KEEAEE 115
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ L++ GL++ ++ +R +SGG K+R++ ++ + +DE ++GLD
Sbjct: 116 RIEELLELFGLED-----KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 179 TTFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236
+ +I LR+ + E V LL E L D +I+L+DG+I+ +G E + E
Sbjct: 171 SRREIWELLRE---LAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 237 FESMGFKC--PQRKGVADFLQEVTSKKDQQQYWA 268
F G P+R +A+ L+ + K +++
Sbjct: 228 FGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP--KKH 773
K L+GVS PG+ L+G +GAGKTTLM +LA G+I+I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
+ R GY Q P TV E L + AWL+ + S+ K ++E++ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 894 GRTVVCTIH 902
R V+ + H
Sbjct: 179 DRIVILSTH 187
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNH 58
M L+LG P SG +T L ALA + + ++ V G + YNG EF Y+S+ D H
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IGEMTVRETLAFSARCQG 76
+TVRETL F+ RC+G
Sbjct: 95 FPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-24
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 14/78 (17%)
Query: 542 WRKFTPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYLY 601
W K SNE LG VLKSRG F +AYWYW+G+GAL GF +L +I FTLALT+LN
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLN----- 55
Query: 602 HLHFNYFKSKFDKPQAVI 619
K QA++
Sbjct: 56 ---------PLGKSQAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L VS +PG A++G +GAGK+TL+ + G + T +GSI++ G P + R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPL-EKERKR 69
Query: 779 ISGYCEQN---DIHSPFVTVHESLAFSAW--LRLAPEVDSETRKMFIEEIMELVELNPLR 833
I GY Q D P ++V + + + L + + ++E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 894 GRTVVCTIHQPSIDIFESFDEAI 916
G T++ H + + E FD +
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 14/192 (7%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---YPKKHET 775
+L+ +S + G +T ++G +G+GK+TL+ LAG +G + + G +
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFS--AWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
A+ Y Q+ +TV+E + L L E ++ +EE +EL+ L L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-VEEALELLGLEHLA 132
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 892
V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 133 DR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 893 TGRTVVCTIHQP 904
G TVV +H
Sbjct: 188 KGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 27/190 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L+ +S G + AL G +GAGKTTL +LAG +++ G SI ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 778 RISGYCEQN-DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR--- 833
+ GY Q+ D +V E L L+ + + E +++ ++L L+
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQ-----AETVLKDLDLYALKERH 123
Query: 834 -QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
SL S Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSL---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 893 TGRTVVCTIH 902
G+ V+ H
Sbjct: 175 QGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 2e-21
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 52/186 (27%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP--KKHETF 776
L+ +S G + L+G +GAGKTTL+ ++ G + G IK+ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS----GEIKVLGKDIKKEPEEV 71
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -G----------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 897 VVCTIH 902
++ + H
Sbjct: 148 ILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 142 IRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVIS 201
+RG+SGG++KRV+ +V +F+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 202 LLQPAPETYNLFDDIILLSDGQIVYQG 228
+ QP+ E + LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 6e-21
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 16/188 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 779 IS-GYCEQN---DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
G Q+ + + V + +AF L L R+ + E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGASGLRE 122
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 895 RTVVCTIH 902
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-KKHETFAR 778
+L +S + G +TAL+G +GAGK+TL+ + G +G IKI G P +K R
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 779 ISGYCEQNDIHSPF-----VTVHESLAFSA-----WLRLAPEVDSETRKMFIEEIMELVE 828
I GY Q S +TV + + W R + D E ++E +E V
Sbjct: 77 I-GYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVG 128
Query: 829 LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 129 MEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183
Query: 889 NTVDTGRTVVCTIHQPSIDIFESFDEAI 916
G+TV+ H + + FD I
Sbjct: 184 ELRQEGKTVLMVTHDLGL-VMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T ++GP +GK+T L ALAG+ + L VSG V NG + + ++ Y+ Q D
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVRETLAFSARCQGV 77
+TVRETL F+A+ +G+
Sbjct: 96 TLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 17/210 (8%)
Query: 714 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 774 ET----FARISGYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
E + G QN F TV + +AF L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 829 LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 889 NTV-DTGRTVVCTIHQPSIDIFESFDEAIP 917
+ G+T++ H + E D +
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVV 211
|
Length = 235 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 30/204 (14%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKH 773
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 774 ETFAR---ISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
R I G+ Q+ + P +T E++ L LA E R E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERR----ERAEELLE 126
Query: 829 LNPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
VGL + LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 884 MRTVRNTV-DTGRTVVCTIHQPSI 906
M +R + G T+V H P +
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 1e-19
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 48/193 (24%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKK 772
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
AR Y Q +EL+ L L
Sbjct: 70 --ELARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 893 -TGRTVVCTIHQP 904
G+TVV +H
Sbjct: 146 ERGKTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 2e-19
Identities = 60/202 (29%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHE 774
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P HE
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP-HE 71
Query: 775 --------TFARISGYCEQNDIHSPF----------VTVHESLAFSAWLRLAPEVDSETR 816
TF Q F V L A + E R
Sbjct: 72 IARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121
Query: 817 KMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 122 ER-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 877 ARAAAIVMRTVRNTVDTGRTVV 898
+ +R + G TV+
Sbjct: 176 PEETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 27/202 (13%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK--- 771
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I+++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 772 KHETFARISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
E + + + QN P++ T+ E++ LA S+ I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQAG 435
Query: 829 LNPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 884 MRTVRNTVDTGRTVVCTIHQPS 905
++ ++ +TV+ H+
Sbjct: 496 LQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-19
Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 39/250 (15%)
Query: 678 QPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALM 737
+ K + LP + F+ V++ D +L +S PG A++
Sbjct: 457 EGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIPPGEKVAIV 505
Query: 738 GVSGAGKTTLMDVLAGRKTGGY--ITGSIKISGYPKKH---ETFARISGYCEQNDIHSPF 792
G SG+GK+TL+ +L G Y G I + G + R GY Q+ PF
Sbjct: 506 GRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD----PF 557
Query: 793 V---TVHESLAFSAWLRLAPEVDSET--RKMFIEEIMELVELNPLR-QSLVGLPGVNGLS 846
+ ++ E++A PE E + E +E P+ + VG G N LS
Sbjct: 558 LFSGSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN-LS 611
Query: 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H+ S
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLS- 669
Query: 907 DIFESFDEAI 916
S D I
Sbjct: 670 -TIRSADRII 678
|
Length = 709 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 7e-19
Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 709 KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIK 765
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 766 ISGYPKK--HETFARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIE 821
++ +K + + G+ QN + P +TV E++ + + RK E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 822 EIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
E++E++ L + LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 882 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEAIPGIEKIKNG 925
V+ +R + G+T++ H P ++ + D I ++K+G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI----ELKDG 218
|
Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 7e-19
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 42/260 (16%)
Query: 659 GRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718
G ++ ++ +AA + K V SL F V+ + +
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAP--VTAAPAPSLEFSGVSVA------------YPGRR 335
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFA- 777
L VS PG AL+G SGAGK+TL+++L G GSI ++G P
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADS 393
Query: 778 --RISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
+ Q+ PF+ T+ E++ + P+ I E +E L+
Sbjct: 394 WRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE----IREALERAGLDEF 440
Query: 833 RQSL-VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
+L GL G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 887 VRNTVDTGRTVVCTIHQPSI 906
+R + GRTV+ H+ ++
Sbjct: 501 LRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 46/187 (24%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R G Q+ P +TV E++A
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 896
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 897 VVCTIHQ 903
VV H
Sbjct: 154 VVLVTHD 160
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP--K 771
++GV+ R G + +G +GAGKTT + +L R T G + +++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
+ R G Q +T E+L L P+ ++E R EE++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 892 DTGRTVVCTIH 902
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I E + P +T E+L A L + I+E++++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 899 CTIHQ 903
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 16/194 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I I G
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS----GEILIDGRDVTG 66
Query: 774 ETFARIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R + G Q+ P +TV E++AF L+L +E R + E++ELV L L
Sbjct: 67 VPPERRNIGMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRAR-VRELLELVGLEGL 123
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 891
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 892 DTGRTVVCTIHQPS 905
+ G T + H
Sbjct: 179 ELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 64/240 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA-----YISQHDNH 58
LLG +GKTT L L G+L + SG NG+++ R AA Y Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTDRKAARQSLGYCPQFDAL 86
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
E+TVRE L F AR +G+ E
Sbjct: 87 FDELTVREHLRFYARLKGLPKS----------------------------------EIKE 112
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLDS 177
+ L+VLGL + A+ +SGG K++++ ++G P++ + +DE ++GLD
Sbjct: 113 EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSV-LLLDEPTSGLDP 166
Query: 178 STTFQIVNCLRQNIHINSETAVI----SLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 232
++ I + + + ++I S+ E L D I ++SDG++ G P+EL
Sbjct: 167 ASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 9e-18
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETF 776
VL +G+S G L G +G+GKTTL+ ++AG G +IK+ G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
A Y + P +TV E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 897 VVCTIHQP 904
V+ H P
Sbjct: 180 VIAATHIP 187
|
Length = 207 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 16/192 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG-----YPKKHET 775
L+G++ + G L+G SGAGK+TL+ ++ + +G+I+++G +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 776 FARIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
+ R G Q+ P V+E++AF A EV + + + +EL L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 895 RTVVCTIHQPSI 906
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGY------P 770
+L GV R G + A++G SG+GK+TL+ ++ G R G + I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 771 KKHETFARISGYCEQ-----NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
+ R G Q + + TV E++AF LR E ++ EEI E
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIRE 115
Query: 826 LVELNPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
+V + VGL G LS +KR+ +A L +P ++ DEPT+GLD A+
Sbjct: 116 IVLE---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 881 AIVMRTVRNTVDT-GRTVVCTIHQ 903
++ +R+ G T + H
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 16/188 (8%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETF 776
++GVS +PG +T L+G +GAGKTT + +LAG G+ T + G+ E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPA 74
Query: 777 A--RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R G+ + +T E+L + A L + R +EE+ + + + L
Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEELLD 131
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G
Sbjct: 132 RRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186
Query: 895 RTVVCTIH 902
+ ++ + H
Sbjct: 187 KCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GSIKISGYPKKHE---T 775
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I ++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
AR+ +Q + ++V ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 894
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 895 RTVVCTIH 902
+V+ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHE 774
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P H
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHR 75
Query: 775 TFARISGYCEQNDIHSPF----------VTVHESLAFSAWLRLAPEVDSETRKMFI-EEI 823
Q F V H L S L E E+
Sbjct: 76 IARLGIARTFQI-TR-LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+E V L L G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 884 MRTVRNTVDT-GRTVV 898
+R D G T++
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 43/226 (19%)
Query: 695 FDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754
F V++S ++ L+ VS R G A++G G+GK+TL+ +LAG
Sbjct: 5 FRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53
Query: 755 KTGGYI--TGSIKISGYPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP 809
Y +GS+ + G + R GY Q D+ + T+ +++ A P
Sbjct: 54 ----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA-----P 103
Query: 810 EVDSETRKMFIEEIMELVELNPLRQSLVGLP---------GVNGLSTEQRKRLTIAVELV 860
D E I+ EL + + P GLS QR+ + +A L+
Sbjct: 104 LADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL 156
Query: 861 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
+P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-17
Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP--KKHETF 776
+ GVS R G + L+G +GAGKTT + +L + T G T ++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT----VAGHDVVREPREV 71
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R G Q+ +T E+L A RL V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHA--RLY-GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 895
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 896 TVVCTIH 902
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 9e-17
Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFA 777
L+GVS PG A++G SG+GK+TL+ LAG G + +S +
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R C Q D H TV E+L + P+ E E+ +E L L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDE-------ELWAALERVGLADWLR 455
Query: 838 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
LP GL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 887 VRNTVDTGRTVVCTIHQP 904
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 37/207 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY------PKKHE 774
L VS + PG AL+G SGAGK+TL+ L G +GS+ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 775 TFARISGYCEQNDIHSPFVTVHESL---------AFSAWLRLAPEVDSETRKMFIEEIME 825
R G Q ++V E++ + + L P+ + + +
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALA 127
Query: 826 LVELNPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
+E VGL + LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 128 ALER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
Query: 881 AIVMRTVRN-TVDTGRTVVCTIHQPSI 906
VM ++ + G TV+ ++HQ +
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-16
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
LR+ + +P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R
Sbjct: 70 ELRRRIGYVPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 891 VDTGRTVVCTIHQPSIDIFESFDEAI 916
+ GRTV+ H P + D I
Sbjct: 127 AEEGRTVIIVTHDPE-LAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFARIS 780
VS G +T L+G +GAGKTTL+ ++A G +T + P +I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR--RKIG 78
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 901 IH 902
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 2e-16
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 52/189 (27%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETF 776
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ Y Q+ PF+ FS + I E
Sbjct: 75 RKNIAYVPQD----PFL-------FS---------GT---------IRE----------- 94
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 95 ------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 897 VVCTIHQPS 905
V+ H+ S
Sbjct: 148 VIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGYP------KKH 773
L ++ PG A++G SGAGK+TL+ + + GSI + G KK
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKKL 74
Query: 774 ETFARISGYCEQNDIHSPFVTV-----HESLAFS----AWLRLAPEVDSETRKMFIEEIM 824
R G Q+ +TV H L + + L E D E R + E +
Sbjct: 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-RALSALERV 133
Query: 825 ELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
L + R + LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 134 GLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM 185
Query: 885 RTVRN-TVDTGRTVVCTIHQPSIDIFESFDEAIPGIEKIKNG 925
++ + G TV+ +HQ +D+ + + + I G +K G
Sbjct: 186 DYLKRINKEDGITVIINLHQ--VDLAKKYADRIVG---LKAG 222
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-16
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L V+ G L+G SG GK+TL+ ++AG T G I ++ P +
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R QN P +TV+E++AF LR P+ + + R ++E+ +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-KKHE 774
DKLV+ +G+S + G L+G +GAGKTT + +L G GSI + G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 775 TFARIS-GYCEQNDIHSPFVTVHESL-AFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
AR G Q D P TV E+L F + L+ + R + + ++E +L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENK 131
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 893 TGRTVVCTIH 902
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--------GSIKISGYPKKHETFARI 779
+T + G SGAGK+TL+ +AG + GG I KI+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
G Q P + V E+LAF R D ++ ++E+++L+ L+ L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR---- 127
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
LS +++R+ +A L A P ++ +DEP S LD ++ ++
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK------- 179
Query: 900 TIHQPSIDIFESFDEA 915
++ P I + EA
Sbjct: 180 NLNIPVIFVTHDLSEA 195
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 52/239 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIG 60
+LGP SGK+T L LAG L SG V +G ++ P+ + AY+ Q +
Sbjct: 33 ILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+TV E + G P ++ +E I
Sbjct: 90 GLTVYELVLL------------------------GRYP------HLGLFGRPSKEDEEIV 119
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEISTGL 175
+ L++LGL++ AD V + +SGG+++RV ++ ALA + +DE ++ L
Sbjct: 120 EEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARALAQETPILLLDEPTSHL 169
Query: 176 DSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
D + +++ LR ++ V+ +L D +ILL DG+IV QG E VL
Sbjct: 170 DIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP---KKHETF 776
LL+GVS RPG + A++G +GAGK+TL+ L+G + +G + ++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAW---------LRLAPEVDSETRKMFIEEIMELV 827
AR QN + F+ R E + + R + +
Sbjct: 74 ARHRAVLPQN--------SSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAAT 123
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAA 881
+L+ L LS +++R+ +A L V + +F+DEPTS LD
Sbjct: 124 DLSGLAGRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 882 IVMRTVRNTVDTGRTVVCTIH 902
+R R G V+ +H
Sbjct: 179 HTLRLARQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 35/204 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
GY Q D P++TV +++A L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 839 LPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 892
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 893 TGRTVVCTIHQPSIDIFESFDEAI 916
TG+TV+ H DI DEA+
Sbjct: 181 TGKTVLLVTH----DI----DEAV 196
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETF 776
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 777 ARISGYCEQNDIHSPFVTVHESLAF------SAWLRLAPEVDSETRKMFIEEIMELVELN 830
AR EQ+ + +TV + +A S W +P + + + EL+
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
L ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 891 VDTGRTVVCTIH 902
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 33/201 (16%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGY------- 769
V+L+GV G + A++G SG+GK+TL+ ++ G R G I I G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 770 PKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
+ +E R+ G Q +TV E++AF LR E K+ I ELV +
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLIRELVLM 127
Query: 830 NPLRQSLVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
LVGL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++
Sbjct: 128 K---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184
Query: 884 MRTVRNTVDT-GRTVVCTIHQ 903
+R D G TV+ H
Sbjct: 185 DELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 61/221 (27%), Positives = 87/221 (39%), Gaps = 57/221 (25%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GSIKISG---- 768
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 769 -----------------YPKKHETFARISGYCEQNDIHSPFVTVHESL--AFSAWLRLAP 809
YP I G VT + L A +A R A
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNA-RRGAR 113
Query: 810 EVDSETRKMFIEEIMELVELNPL---RQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSI 865
+ E K ++E EL+ L+ R VN G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 866 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
+DEP SGLD A IV + + GR V+ H +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFA 777
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 778 RIS-----GYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
+ G Q +PF ++++++A+ L K ++E +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 832 LRQSL--VGLPG-------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 883 V 883
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 60/233 (25%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQH-D 56
L++GP SGK+T L L G L SG V +G ++ + + R + Q+ D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+ TV E +AF G+ +E
Sbjct: 86 DQFFGPTVEEEVAFGLENLGL----------------------------------PEEEI 111
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV-GPALAMFMDEISTGL 175
+ L+++GL+ D +SGGQK+RV ++ P + + +DE + GL
Sbjct: 112 EERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDI-LLLDEPTAGL 165
Query: 176 DSSTTFQIVNCLRQNIHINSETAVIS-----LLQPAPETYNLFDDIILLSDGQ 223
D + +++ L++ + +T +I LL L D +I+L DG+
Sbjct: 166 DPAGRRELLELLKK-LKAEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 1e-14
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPKKH--- 773
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G ++++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 774 ETFARISGYCEQNDIHS----PFVTVHESLAF--SAWLRLAPEVDSETRKMFIEEIMELV 827
AR Q HS PF TV E +A + E D+ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 881
+L L LS +++R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 882 IVMRTVRN-TVDTGRTVVCTIH 902
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+ +S + G L AL+G SGAGK+TL+ ++AG G I + ++ R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
G+ Q+ P +TV +++AF +R ++E R +EE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 897
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 898 VCTIHQPSIDIFESFDE 914
V H + E D
Sbjct: 192 VFVTHDQE-EALELADR 207
|
Length = 345 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 778 RIS-GYCEQNDIHSPF--VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R+ GY Q S F +TV E++ A L + + + R+ +EE++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENI--LAVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 895 RTVVCTIH 902
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-14
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GSIKISGYPKKHET 775
++ VS R G L+G SG+GK+TL +LAG + G I + ++G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG--GELRR 364
Query: 776 FARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
R Q+ S P +TV + LA LR+ R+ + E++ELV L P
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
+ L P + LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP---KKHE 774
LN VS G ++G SG+GK+TL +LAG + + +GSI + G P KK
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 775 T-FARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
F R Q+ S P TV L+ + I E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGSIKISGYPKKHETF 776
LN +S + PG L L+G +GAGKTTLMDV+ G R G G ++ P +H
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHR-I 78
Query: 777 ARISGYCEQNDIHSPF--VTVHESLAF------SAWLRLAPEVDSETRKMFIEEIMELVE 828
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 829 LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GSIKISGYPKKHETF 776
L+ VS + + G L+G SG+GK+TL + G + T G I G + + +
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 777 ARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
+ Q+ + S P +T+ E +A + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
+ P + LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 31/211 (14%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG--YPKKHETF 776
V+L+ ++ G + A++G SG+GK+TL++++ + + +G + ++G P +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGQETPPLNSKK 69
Query: 777 ARIS-----GYCEQNDIHSPFV-----TVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
A GY QN F TV E+L L+ E R+ +E +E
Sbjct: 70 ASKFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEK 121
Query: 827 VELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
V LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+
Sbjct: 122 VGLNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
Query: 886 TVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916
+ D G+T++ H P + + D I
Sbjct: 176 LLLELNDEGKTIIIVTHDPE--VAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 35/209 (16%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
GY Q D P++TV +++A L L + +E R E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALG--LELRGKSKAEAR----ERAKELLEL---- 117
Query: 834 QSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 889 NTV-DTGRTVVCTIHQPSIDIFESFDEAI 916
+T +TV+ H DEA+
Sbjct: 175 RLWEETRKTVLLVTH--------DVDEAV 195
|
Length = 248 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 894 GRTVVCTIHQP 904
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 13/192 (6%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFARIS 780
VS G + L+G +GAGKTT ++ G R G I IS P H R
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL-HARARRGI 80
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
GY Q ++V+++L A L++ ++ +E R+ E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--- 135
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 901 IH--QPSIDIFE 910
H + ++ + E
Sbjct: 194 DHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 6e-14
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKK 772
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R G Q+ P +TV E++AF L++ ++ K +EE +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181
|
Length = 352 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-14
Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 55/192 (28%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH---E 774
+L VS + PG A++G SG+GK+TL ++ G R T G +++ G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 775 TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
GY Q+D ++F I E
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAE--------- 94
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
N LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 95 --------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 895 RTVVCTIHQPSI 906
T + H+P
Sbjct: 147 ATRIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 7e-14
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFA-RI 779
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I+++G R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
G+ Q+ +TV +++AF +R + K +EE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETR-KMFIEEIMELVELNPLRQSL 836
R G+ Q+ +TV +++AF ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
P LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L+ VS R G L G SGAGKTTL+ +L G T G ++I+G ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 781 ------GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
G Q+ P TV+E++A +R E + + R + + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 895 RTVVCTIHQPSI 906
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
+ +L G+S G + G +G GKTTL+ +LAG R G + + ++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV--RWNGTALAEQR 68
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
+ R Y P ++ E+L F W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
LP LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 D----LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 894 GRTVVCTIHQP 904
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIK-ISGYPKK--HET 775
L V+ G + A++G SGAGK+TL+ L G T G I + I+ K +
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 776 FARISGYCEQNDIHSPFVTVHESLAF------SAWLRLAPEVDSETRKMFIEEIMELVEL 829
I G Q P ++V E++ S W L E + ++ L +
Sbjct: 80 RRDI-GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERV 135
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR- 888
L ++ + LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 136 GILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 889 -NTVDTGRTVVCTIHQPSIDI-FESFDEAIPGIEKIKNG 925
N D G TV+ +HQ +D+ + D I +K G
Sbjct: 193 INQED-GITVIVNLHQ--VDLAKKYADRII----GLKAG 224
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP---KK 772
DK V+ NG+S G L+G +GAGK+T+ ++ G + G I + G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 773 HETFARISGYCEQNDIHSPFVTVHESL-AFSAWLRLAPEVDSETRKMFIEEIM-ELVELN 830
ARI G Q D TV E+L F + ++ TR+ IE ++ L+E
Sbjct: 110 RLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFA 160
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
L +S V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+
Sbjct: 161 RL-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218
Query: 891 VDTGRTVVCTIH 902
+ G+T++ T H
Sbjct: 219 LARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
L VS G L ++G SG GKTTL++++AG T GSI+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSLVG 838
G QN+ P++ V +++AF L+L ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLR-GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 12/188 (6%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGSIKISGYPKKHET 775
V+L+ VS G +T+++G +GAGK+TL M L + +G ++++ P K E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK-EL 73
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
++S ++N I+S TV + + F + + E R++ I E +E + L L
Sbjct: 74 AKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSDR 131
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 894
+ + LS QR+R IA+ L + + +DEP + LD + + +M+ +R D G
Sbjct: 132 YL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186
Query: 895 RTVVCTIH 902
+T+V +H
Sbjct: 187 KTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISG---YPKKHET 775
L G+S G + +G +GAGKTT + +L+G + T G ++++G + ++ +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
RI Q + V +S A + P + R ++E+ EL++L L +
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKR---LDELSELLDLEELLDT 149
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 894
P V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 ----P-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 895 RTVVCTIH 902
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-13
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL----IDGKP------VA 73
Query: 779 ISGYCEQND-----IH-----SPFVTVHESLAFSAWL-RLAPEVDSETRKMFIE--EIME 825
S + +H P ++V E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 826 LVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
+ L+ LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 885 RTVRNTVDTGRTVV 898
+R G ++
Sbjct: 186 DLIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-13
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 30/167 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSIKISGY-----PKK 772
L+ VS + G + +G +GAGK+T M ++ G Y+ +GS+++ G PK+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 773 HETFARISGYCEQNDIHSPF---VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
R GY + H+P + V E L F A + + + K +EE++ELV L
Sbjct: 73 ---VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGL 123
Query: 830 NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
P + +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 124 RPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
D L G++ G + AL+G +GAGK+TL G + T +G + I G P K+
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 774 ETFARIS-----GYCEQN---DIHSPFVTVHESLAFSAWLRLA-PEVDSETR-KMFIEEI 823
+ + + G QN + +P TV E +AF L L + + E R K ++ +
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKRVKEALKAV 125
Query: 824 -MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
ME E P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 126 GMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 883 VMRTVRNTVDTGRTVVCTIH 902
+M+ + + G T++ + H
Sbjct: 176 IMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 7e-13
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L GVS G + AL+G +GAGKTTL+ + G G I I+G P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHE 71
Query: 778 RIS---GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLR 833
R GY + P +TV E+L A+ R + + +E + EL L R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERR 126
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 894 GRTVV 898
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKI-----SGYPKKHET 775
L ++ PG + L G SG+GKTTL+ ++ G ++ GS+K+ G +K
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 776 FARIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 893
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 894 GRTVVCTIHQPSI 906
G T++ H I
Sbjct: 192 GCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 15/166 (9%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKK 772
V L+GVS + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-- 68
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R QN P +TV E++AF LRL ++ K + E ++LV+L
Sbjct: 69 --PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGY 123
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 124 ANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 34/201 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKK--HET 775
L ++ + +PG A++G +GAGKTTL+++L G I I I +K
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78
Query: 776 FARISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
G Q F+ T+ E++ + E + +
Sbjct: 79 I----GVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDF 121
Query: 833 RQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 122 IMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 886 TVRNTVDTGRTVVCTIHQPSI 906
+ + GRT + H+ S
Sbjct: 181 ALEKLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 60/251 (23%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS---LKVSGRVTYNGHNMGEFVPQRTAAYISQH-D 56
LL+GP SGK+T L L G L + + V G T + ++ E + + Q+ D
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPD 89
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+ + TV + +AF G+ RE+ ++ E
Sbjct: 90 DQLFGPTVEDEVAFGLENLGL-----------PREE-------------IEERVAE---- 121
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEI 171
L+++GL+ D +SGGQK+RV + G LAM +DE
Sbjct: 122 ------ALELVGLEELLD-----RPPFNLSGGQKQRVA----IAG-VLAMGPEILLLDEP 165
Query: 172 STGLDSSTTFQIVNCLRQNIHINSETAVIS--LLQPAPETYNLFDDIILLSDGQIVYQGP 229
+ GLD +++ L++ +T +I L+ E D +++L DG+I+ G
Sbjct: 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---YADRVVVLDDGKILADGD 222
Query: 230 RELVLEFFESM 240
+ E +
Sbjct: 223 PAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFA 777
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+ H
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R QN P + V +++AF + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 895
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 896 TVVCTIH 902
T++C H
Sbjct: 191 TILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P + +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I E ++ +T E+L L P DS I+E++ +V+L +
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTNTGKKKAK 123
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYP--- 770
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 771 KKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME----- 825
R G Q E++ F+ +R + M +E ++E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 826 -----LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 881 AIVMRTVRNTVDTGRTVVCTIHQPS 905
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 735 ALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY------PKKHETFARISGYCEQNDI 788
++G +G+GK+ L++ +AG +G I ++G P+K + Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDI-----SYVPQNYA 81
Query: 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE---IMELVELNPLRQSLVGLPGVNGL 845
P +TV++++A+ R + + E + + I E I L+ P L
Sbjct: 82 LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------L 130
Query: 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905
S +++R+ IA LV NP I+ +DEP S LD R + ++ V +H
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH--- 185
Query: 906 IDIFESFDEA 915
+ F+EA
Sbjct: 186 --VTHDFEEA 193
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P +H+ A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQ-IA 75
Query: 778 RISGYCE--QNDIHSPFVTVHESLAFSA----------WLRLAPEVDSETRKMFIEEIME 825
R +G Q +TV E+L + + RL+ E IEE++E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 26/225 (11%)
Query: 686 LPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 745
L S+ F+ V++S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 746 TLMDVLAGRKTGGYITGSIKISGYPKKHETFA---RISGYCEQNDIHSPF-VTVHESLAF 801
TL+ +L +G I I G + + + G Q+ + F T+ E++A
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL--FSGTIRENIAL 425
Query: 802 SAWLRLAPEVDSETRKMFIEE-IMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 860
E++ + E I L + ++VG GVN LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGY---DTIVGERGVN-LSGGQRQRLAIARALL 481
Query: 861 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905
NP I+ +DE TS LD A++ ++ + GRT + H+ S
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L ++ G L ++G SG GKTTL++++AG Y GSI + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
G QN+ P+ V +++AF L+LA V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-12
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 55/233 (23%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA-------YIS 53
++GP SGK+T LL + G LD SG V +G ++ + + AA ++
Sbjct: 32 FVAIVGPSGSGKST-LLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVF 88
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
Q N + ++T E + GV + RRE+A +
Sbjct: 89 QSFNLLPDLTALENVELPLLLAGVPKK-------ERRERAEEL----------------- 124
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMDEIS 172
L+ +GL + + E+ SGGQ++RV + P + + DE
Sbjct: 125 ----------LERVGLGDRLNHYPS-EL----SGGQQQRVAIARALANDPKI-ILADE-P 167
Query: 173 TG-LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224
TG LDS T +++ LR+ ++ + T ++ ++ PE D II L DG+I
Sbjct: 168 TGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-12
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKT----GGYITGSIKISGYPKKHETFARISGYCE 784
RPG L+GV+GAGKTT +L G T + G ++ H+ GYC
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYCP 2018
Query: 785 QNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE--LNPLRQSLVGLPGV 842
Q D +T E L A LR P EEI ++ + L SL
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA----------EEIEKVANWSIQSLGLSLYADRLA 2068
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 15/193 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G++ + G +TA++G +GAGK+TL L G + + G I K Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 779 IS-GYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
S G Q+ + F +V++ ++F A PE + R ++ ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 895
P + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ---P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 896 TVVCTIHQPSIDI 908
T++ H IDI
Sbjct: 194 TIIIATH--DIDI 204
|
Length = 283 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGSIKISGYPKKHETF 776
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
RI GY + P + V + L + A L+ + ++ R I+E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEYANK- 124
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+T
Sbjct: 125 ----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 897 VVCTIHQ 903
V+ + HQ
Sbjct: 181 VILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET---F 776
+LN +S + G +TAL+G +G GK+TL+ A T +G++ + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 777 ARISGYCEQNDIHSPFVTVHESLAF------SAWLRLAPEVDSETRKMFIEEIMELVELN 830
AR Q+ + +TV E +A+ S W RL+ E + + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
L + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 891 VDTGRTVVCTIH 902
G+TVV +H
Sbjct: 185 NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 709 KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG 768
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G +++ G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 769 YP---KKHETFARIS----GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIE 821
P + A + G+ Q+ P +T E++A LR +
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR-----GESSADSRAG 126
Query: 822 EIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 877
L + L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 AKALLEAVG-LGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 878 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-12
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 142 IRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVIS 201
+RG+S Q+KR+T G + +F+DE ++GLDS + IV L+ + + + + +
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KLADSGQAILCT 164
Query: 202 LLQPAPETYNLFDDIILL-SDGQIVYQG 228
+ QP+ + FD ++LL G+ VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 711 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G + + G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 771 -------KKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI 823
+ + A+ G+ Q+ + P + E++ A LR E ++R
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L+E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 8e-12
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET-FA 777
V++N +S G L+G +GAGK+T+ +L G + G I + G P A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 778 RIS-GYCEQNDIHSPFVTVHESL-AFSAWLRLAPEVDSETRKMFIEEIM-ELVELNPLRQ 834
R++ G Q D P TV E+L F + ++ TR+ IE ++ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFARL-E 126
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
S + V LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 895 RTVVCTIH 902
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 9e-12
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 709 KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG 768
+ L+ VS G + ++G SGAGK+TL+ ++ + +GS+ + G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDG 67
Query: 769 -----YPKKH-ETFARISGYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
+ + G Q N + S TV E++AF L LA V K
Sbjct: 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK--- 119
Query: 821 EEIMELVELNPLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
+ + EL+EL VGL LS Q++R+ IA L NP I+ DE TS L
Sbjct: 120 QRVAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172
Query: 876 D 876
D
Sbjct: 173 D 173
|
Length = 339 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
D L +G+S G + G +G+GKTTL+ +LAG G + + +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV--LLNGGPLDFQR 68
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
++ AR Y ++V E+L F + E +EE + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
P V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 D----RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 894 GRTVVCTIHQP 904
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 745 TTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS----GYCEQNDIHSPFVTVHESLA 800
+TL+ ++ G +G+I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 801 FSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 860
F + EE +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 861 ANPSIIFMDEPTS 873
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T L+G +GKTT L LAG+ + + ++G + NG + + QR+ Y+ Q D H
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVRETLAFSARCQGVGTR 80
+TVRE L FSA +G+
Sbjct: 93 NLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH--- 773
K L G+S + + G A++G SG+GK+TL ++ G +GS+++ G K
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
ETF + GY Q D+ TV E++A R D E +I+E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 834 QSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
+ ++ LP G LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 885 RTVRNTVDTGRTVVCTIHQPSI 906
++ G TVV H+PS+
Sbjct: 495 NAIKALKARGITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE 774
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 775 TFA---RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
T A R G Q D+ TV E++A+ TR EE+ E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR--------PGATR----EEVEEAARAAN 116
Query: 832 LRQSLVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 883 VMRTVRNTVDTGRTVVCTIHQPS 905
V + + RT H+ S
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 730 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGGYI--------TGSIKISGYPKKHETFAR 778
PG +TA+ G SG+GKTTL+ ++AG R G I I P+K R
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK-----R 75
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
GY Q P ++V +L + R++ E ++EL+ + L L G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 -----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ----K 75
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSL 836
R G Q+ P +TV +++A+ + R M E+ E V EL L
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 837 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSIKISGYP-KKHETFA 777
LL V+ G + LMG SG GK+TL+ + G G + TG + ++
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R G Q+ + P ++V ++L F+ L + R+ +E L+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-- 130
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 131 -DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
+N VS G + L+G +GAGKTT ++ G R G I I+ P A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 778 RIS-GYCEQNDIHSPF--VTVHESLAFSAWLRLAPEVDSET--RKMFIEEIMELVELNPL 832
R+ GY Q S F +TV +++ +R E D + RK ++ ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHL 132
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
R S + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 893 TGRTVVCTIH 902
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ET 775
+L G+S A + G ++G SG+GK+TL +L G +GS+++ G + E
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQ 407
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIE-----EIMELVELN 830
R GY Q D+ T+ E++A R E D E IE + EL+
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK---VIEAARLAGVHELILRL 458
Query: 831 PL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
P + +G G LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 459 PQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 890 TVDTGRTVVCTIHQPSI 906
G TVV H+PS
Sbjct: 518 AKARGGTVVVIAHRPSA 534
|
Length = 580 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGSIKISG---YPK 771
LN VS F P +TAL+G SG+GK+TL M+ L T ITGSI +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 772 KHETF---ARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEE----- 822
+ +T I +Q + PF ++++E++ + LRL D + +E+
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 823 -IMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
I + V+ + L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVK-DRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAG 185
Query: 882 IVMRTVRNTVD--TGRTVVCTIHQPS 905
+ T+ D T V ++ Q S
Sbjct: 186 KIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-11
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHET 775
+V + VS + + G + AL+G +GAGK+TLM +L G + G I++ G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 776 FARISGYCEQND--------IHSPFV-----TVHESLAFSAWLRLAPEVD-SETRKMFIE 821
RI D +H F+ TV E++ +D + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 822 EIMEL--VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
E+ E + ++P + V LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 880 AAIVMRTVRNTVDTGRTVV 898
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 5e-11
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 61/180 (33%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
SP + R+ I + +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
+ Q + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -----SVGERQM--VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L VS G L G SGAGK+TL+ ++ G R T G I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 778 RIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R G Q+ P TV+E++A V + + + E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 897 VVCTIH 902
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 6e-11
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L GVS G + AL+G +GAGKTTL+ + G R G I I+G P HE
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP-PHERAR 77
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSL 836
Y + P +TV E+L L D E ++ +EE+ EL L R
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
G LS +++ L IA L++ P ++ +DEP+ GL + + ++ G
Sbjct: 134 AGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGM 188
Query: 897 VVCTIHQ 903
+ + Q
Sbjct: 189 TILLVEQ 195
|
Length = 237 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 16/196 (8%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISG---YPKKH 773
++GVS + G + ++G SG+GK+ L + G K I G I G
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 774 ETFARISG----YCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV 827
+ +I G Q+ + S P +T+ + +A L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+ + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 888 RNTV-DTGRTVVCTIH 902
+ + G ++ H
Sbjct: 197 KELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L G++ F +T L+G +G GK+TL L+G R G + K Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 778 R--ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
R ++ + + + + +AFS PE + R ++E + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR---VDEALTLVDAQHFRHQ 132
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 -----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN 187
Query: 896 TVVCTIHQPSIDIFESFDEAI 916
V+ + H ID+ +A+
Sbjct: 188 HVIISSH--DIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
++ +S PG + L+G +GAGKTT ++ G G I +G P E RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 781 GYC-EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
GY E+ ++ P +TV + L + A L+ P+ + + + ++ +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 840 PG--VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 898 VCTIHQ 903
+ + H+
Sbjct: 184 IFSSHR 189
|
Length = 300 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 25/167 (14%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPKK----H 773
++ V+ G L+G SG+GKTT + + I G I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE---VDSETRKMFIEEIMELVELN 830
E +I GY Q P +TV E++A P+ D E K +E+++LV L+
Sbjct: 72 ELRRKI-GYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLD 124
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
P + P + LS Q++R+ +A L A+P I+ MDEP LD
Sbjct: 125 P-SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
|
Length = 309 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 14/190 (7%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK---KHET 775
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFS--AWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
FAR Y Q + +TV E +A W + R+ +EE + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 892
LV + LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 893 TGRTVVCTIH 902
G TV+ +H
Sbjct: 197 RGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-KKHETFARI 779
L GVS G +T ++G +G GKTTL+ L G +GSI++ G K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITKLPPHERA 73
Query: 780 S---GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQS 835
Y Q P +TV E+L +I + + EL P+ +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPVLKE 123
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
++G G + LS Q+++L IA LV P ++ +DEPT G
Sbjct: 124 MLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 48/232 (20%)
Query: 2 TLLLGPPASGKTTFLLALAG--KLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDN 57
T + G +GK+T L +AG K D V +P QR + Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ VRE LAF + + + EL
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDEL------------------------------ 115
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLD 176
L +LGLD+ + + +SGG+K+RV + P L + +DE + LD
Sbjct: 116 ------LDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPFSALD 163
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ Q++ L+Q I N VI + E L D I+++ DG++ Y G
Sbjct: 164 RALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 33/217 (15%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT------GSIKISGYPK 771
+L +S PG A++G +GAGKTTL+ +L G + G +T G + +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 772 KHETFARISGYC--EQNDIHSPFVTVHESL--AFSAWLRLAPEVDSETRKMFIEEIMELV 827
K G E ++ TV + + F A + + E + + ++EL+
Sbjct: 106 KR------IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
L G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 160 GAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214
Query: 888 R--NTVDTGRTVVCTIHQPSIDIFESFDEAIPGIEKI 922
++ H +E P
Sbjct: 215 EELAASPGAPALLFVTHHA--------EEIPPCFTHR 243
|
Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 736 LMGVSGAGKTTLMDVLAG--RKTGGYI-TGSIKISGYPKKHETFARISGYCEQNDIHSPF 792
L+G SG GKTT + ++AG T G I G ++ P K A + QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF----QNYALYPH 86
Query: 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852
+TV++++AF LR P+ + + R + E+ EL+++ L LS QR+R
Sbjct: 87 MTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQR 138
Query: 853 LTIAVELVANPSIIFMDEPTSGLDAR 878
+ + +V P + MDEP S LDA+
Sbjct: 139 VALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 28/249 (11%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQND-IH 789
G + AL+GV+G+GK+TL L G +G I I G P + + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 790 SPFVTVHESLAFSA------WLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
F + E + WLR A + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 904 -PSIDIFESFDEAIPGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYRGNK 962
S+ F + + G + +G T+ TA + E+A F+ + + L +
Sbjct: 202 LGSVTEFCDYTVMVKGT-VLASGPTETTF----TAENLELA----FSGVLRHVALNGSEE 252
Query: 963 ALIEDLSKP 971
++I D +P
Sbjct: 253 SIITDDERP 261
|
Length = 272 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 713 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT-GSIKISGY 769
+ LNG+S G ++G +GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 770 PKKH--ETFARI-----SGYCEQNDIHSPFVTVHESLAFSAWLR-----LAPEVDSETRK 817
AR+ +G P +T+ E+LA A R L+ ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 818 MFIEEIMELVE-LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
F E + L L +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 877 ARAAAIVM 884
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 62/242 (25%), Positives = 93/242 (38%), Gaps = 62/242 (25%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG--- 60
LLG +GKTT L +A L SG+VT +G + R +++ + IG
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRDPSFVRRK---IGVLF 81
Query: 61 -------EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
+T RE L + AR L L+R+E A I
Sbjct: 82 GERGLYARLTARENLKYFAR----------LNGLSRKEIKARI----------------- 114
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIST 173
A + K L L D VG S G K++V +V + +DE ++
Sbjct: 115 --AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTS 162
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233
GLD T + + ++Q N AVI E L D +I+L G++V +G E +
Sbjct: 163 GLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
Query: 234 LE 235
Sbjct: 221 DA 222
|
Length = 245 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 66/259 (25%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQ------HD 56
LLGP GK+T L +AG + + SG + +G ++ + P+ R A + Q H
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH- 89
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
MTV E +AF ++L KA +ID K V E
Sbjct: 90 -----MTVYENIAFG-------------LKLRGVPKA-------EID---KRVK----EV 117
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
K+LGL++ + + +SGGQ++RV +V +DE + LD
Sbjct: 118 -------AKLLGLEH-----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLE 235
+ + + + + +H T I + E L D I++++DG+I G P EL
Sbjct: 166 AKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL--- 221
Query: 236 FFESMGFKCPQRKGVADFL 254
++ P VA F+
Sbjct: 222 ------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 777 ARISGYCEQNDIHSPFV-TVHESLA-FSAWLRLA-PEVDSETRKMFIEEI-MELVELNPL 832
+ + + F+ H L F+A +A P + + +E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 889
+ P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 890 TVDTGRTVV 898
++T VV
Sbjct: 190 ELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK--HETFAR 778
L+ +S R G + ALMG +GAGK+TL+ +L+G GSI I G + T A
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 779 ISG----YCEQNDIH-SPFVTVHESLAFSAWLRLAPE----VDSETRKMFIEEIMEL--V 827
+G Y E +H P +TV E+L +L P V+ E +E V
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+++P + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 888 RNTVDTGRTVVCTIH 902
R GR ++ H
Sbjct: 184 RELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVT 794
L+G SG GKTTL+ +LAG + GSI + G + R Q+ P +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLT 854
V E++AF +R +V K + E + LV+L + LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 855 IAVELVANPSIIFMDEPTSGLDAR 878
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGS-IKISGYPKKHETFARI 779
L+ V G + AL+G SG+GK+TL+ L+G TG GS I++ G + E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 780 SGYCEQNDIHSPFV----------TVHESLAFSA------WLRLAPEVDSETRKMFIEEI 823
+ ++ ++ ++ +V E++ A W E ++ ++ +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+ ++ Q V+ LS Q++R+ IA L+ +I DEP + LD +A IV
Sbjct: 138 TRVGMVHFAHQR------VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 884 MRTVRNTVDT-GRTVVCTIHQ 903
M T+R+ G TVV T+HQ
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 735 ALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS---GYCEQN---DI 788
A++G +GAGK+TL G +GS+ I G P E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848
SP TV + +AF + L +D ET + + ++ L LR + P + LS
Sbjct: 92 FSP--TVEQDIAFGP-INLG--LDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 907
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +D
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--LD 199
Query: 908 IFESFDEAIPGIEK 921
+ + I ++K
Sbjct: 200 LVPEMADYIYVMDK 213
|
Length = 277 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 706 QEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIK 765
M+L V E L +SG R G + L+G +GAGK+TL+ +AG +G +GSI+
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 766 ISGYPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE 822
+G P + AR Y Q +P A W L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 823 IMELVEL-NPLRQSLVGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 876
+ + L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 877 ARAAAIVMRTVRNTVDTGRTVVCTIH 902
+ + R + G +V + H
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 47/232 (20%)
Query: 659 GRNSSSQSLSMT------EAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQG 712
+ + ++ S EA +P + G L F + + +
Sbjct: 273 AASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR---FPPPGKRLGKLVLEFENVSK 329
Query: 713 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772
+ +LL +S G A++G +GAGK+TL+ +LAG G ++G++K+ G K
Sbjct: 330 GYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK 386
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
GY +Q+ +T + E + +
Sbjct: 387 -------IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEV 419
Query: 833 RQSL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
R L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-10
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 75/272 (27%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ LLGP +GK+T L +AG +GR+ NG + + + ++ D +G
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------VSNLAVRDRKVG 80
Query: 61 ----------EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVA 110
MTV + +AF + + + E R + +
Sbjct: 81 FVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-------------- 121
Query: 111 TEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 165
L+++ L+ + D +SGGQ++RV + ALA
Sbjct: 122 -------------LRLVQLEG-----LADRYPAQLSGGQRQRVA-----LARALAVEPKV 158
Query: 166 MFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225
+ +DE LD+ ++ LR+ +H + + E L D +++L+ G+I
Sbjct: 159 LLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217
Query: 226 YQGPRELVLEFFESMGFKCPQRKGVADFLQEV 257
GP + V + P + VA FL EV
Sbjct: 218 QVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L + G A++G SG+GK+TL+ +LAG GSI ++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLR----LA-PEVDSETRKMFIEEIMELVELNPLRQS 835
EQ + V FS LR LA P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 836 L-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 889 NTVDTGRTVVCTIH 902
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 29/196 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L+GV + R G L L+G +GAGKTTL+ + G T G++ ++G AR
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDV-EALSARA 74
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWL-------------RLAPEVDSETRKMFIEEIMEL 826
+ + S V SL+F + R +++ +E ME
Sbjct: 75 AS----RRVAS--VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMER 126
Query: 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
+ P V LS +R+R+ +A L ++ +DEPT+ LD +
Sbjct: 127 TGVA----QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181
Query: 887 VRNTVDTGRTVVCTIH 902
VR VD G+T V IH
Sbjct: 182 VRRLVDDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 46/230 (20%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHI 59
LLGP GKTT L +AG SG + +G ++ P +R + Q
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALF 84
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
+TV E +AF + +GV E+ R +
Sbjct: 85 PHLTVAENIAFGLKLRGVPKA-----EIRARVREL------------------------- 114
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV-GPALAMFMDEISTGLDSS 178
L+++GL+ + + +SGGQ++RV + P+L + +DE + LD+
Sbjct: 115 ----LELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPSL-LLLDEPLSALDAK 164
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ L++ + I + E L D I ++++G+IV G
Sbjct: 165 LREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT--GSIKISGY 769
+L+G+ +PG + A++G SG+GKTTL+ + AG G IT + +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 770 PKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
+ G+ QN P TV E++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 830 NPLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 885 RTVRNTVDTGRTVVCTIHQPS 905
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 49/182 (26%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YP 770
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 771 KKHETFA---RISGYCEQ--NDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIM 824
K + R+ G Q N PF ++++++A+ LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 825 ELVELNPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
E+VE + L++ L GLS Q++RL IA L P ++ MDEPTS
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 875 LD 876
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 727 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR--ISGYCE 784
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 785 QNDIHSPFVTVHES--LAFSAWLRLAPE----VDSETRKMFIEEIMELVELNPLRQSLVG 838
+N++ +TV ++ L S L+L E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 895
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 896 TVVCTIHQPS 905
TV+ HQP
Sbjct: 181 TVLMVTHQPE 190
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT-GGYITGSIKISGYPKK 772
L G+S PG AL+G SG GK+T++ D +G G + + +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78
Query: 773 HETFARISGYCEQNDIHSP---FVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVE 828
I G Q P T+ E++ + EV+ +K I + IM L
Sbjct: 79 ------I-GLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL-- 125
Query: 829 LNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
P +LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 126 --PDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182
Query: 888 RNTVDTGRTVVCTIH 902
+ GRT + H
Sbjct: 183 -DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 72/242 (29%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA-------YIS 53
++GP SGK+T LL L G LD SG V NG ++ + + A ++
Sbjct: 33 FVAIVGPSGSGKST-LLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
Q+ N + ++TV E + G RR++AA
Sbjct: 90 QNFNLLPDLTVLENVELPLLIAGKSAG--------RRKRAA------------------- 122
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FM 168
+ L+VLGL++ + + +SGGQ++RV + AL
Sbjct: 123 -------EELLEVLGLED----RLLKKKPSELSGGQQQRV-----AIARALINNPKIILA 166
Query: 169 DEISTG-LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNL-----FDDIILLSDG 222
DE TG LDS T +++ LR+ +T ++ T++ D +I L DG
Sbjct: 167 DEP-TGNLDSKTAKEVLELLRELNKERGKTIIMV-------THDPELAKYADRVIELKDG 218
Query: 223 QI 224
+I
Sbjct: 219 KI 220
|
Length = 226 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 57/248 (22%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHI 59
+ LLGP SGK+T L +AG L+ SGR+ NG + + R ++ QH
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
+TVR+ +AF +E+ + KA +KA E
Sbjct: 85 KHLTVRDNIAFG-------------LEIRKHPKAK-----------IKARVEE------- 113
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
L+++ L+ +GD +SGGQ++RV + + +DE LD+
Sbjct: 114 ---LLELVQLEG-----LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQI--------VYQGP 229
++ + LR+ ++ E V ++ E + D I+++S+G+I VY P
Sbjct: 166 RKELRSWLRK---LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
Query: 230 -RELVLEF 236
V+ F
Sbjct: 223 ANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 31/182 (17%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL VS PG L+G +GAGK+TL+ +LAG +G + R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 779 ISGYCEQNDIHSPFVTVHESL--AFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ GY Q P TV + + F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 837 ---------------VGLPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
+G P V+ LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 878 RA 879
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L G+S + G TAL+G +GAGK+TL+ L G G +K+ G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 781 ---GYCEQNDIHSPFV-TVHESLAFSAW-LRLAP-EVDSETRKMFIEEIMELVELNPLRQ 834
G Q+ F TV + +AF + L EV+ EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 895 RTVVCTIH 902
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISG----------YPKKHETFA 777
G+ TAL G SG+GKT+L++++AG R G I ++G + +
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIE----LNGRVLVDAEKGIFLPPEK--- 75
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R GY Q+ P TV +L + W ++ + ++++ L+ + L L
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY------P 770
K+ L VS + G + ++G SGAGK+TL+ + G + +GS+ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 771 KKHETFARISGYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
K+ R G Q N + S TV E++A L +A +E + + E++ELV
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAGVPKAE-IEERVLELLELVG 129
Query: 829 LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
L + P LS Q++R+ IA L NP ++ DE TS LD ++ +R
Sbjct: 130 LEDKADAY---PA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184
Query: 889 NT-VDTGRTVVCTIHQ 903
+ + G T+V H+
Sbjct: 185 DINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 20/180 (11%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGY-P-KKHETFARISGYCEQ 785
G + +G +GAGK+T + +L G T G + +++G P ++ E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLVMG 104
Query: 786 NDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVN 843
+ + +SL L+L E+ + ++ + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 902
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
|
Length = 325 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ--RTA----AYISQ 54
L+GP +GK+T L L G ++ + SG V +G ++ + + R I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 HDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ 114
N I ++V E + S R T + + EK +
Sbjct: 86 QFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL------------------ 126
Query: 115 EANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMDEIST 173
L+ +GL + A D++ SGGQ++RV +M P L + DE
Sbjct: 127 -------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALMQQPKL-ILADEPVA 173
Query: 174 GLDSSTTFQIVNCLRQNIHINSE---TAVISLLQPAPETYNL----FDDIILLSDGQIVY 226
LD +++ Q+++ L++ IN E T ++SL Q +L D I+ L DG+IV+
Sbjct: 174 SLDPASSRQVMDLLKR---INREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVF 225
Query: 227 QGPRE 231
GP
Sbjct: 226 DGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIK-----ISGYPK 771
+ VS PG + ++G SG+GK+TL L G + G +G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 772 KHET--FARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV 827
+ + Q+ + S P +T+ + + + L E RK E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA-EARKR-AVELLEQV 140
Query: 828 EL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
L +P R+ P + LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 887 VRN-TVDTGRTVVCTIHQPSI 906
+++ + G V+ H +
Sbjct: 197 LKDLQRELGMAVLFITHDLGV 217
|
Length = 539 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 59/265 (22%), Positives = 99/265 (37%), Gaps = 53/265 (20%)
Query: 676 VIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTA 735
V P ++L + +FDE E++LV LN +S F +
Sbjct: 12 VPNPLSDDIILRVKNLYCVFDEKQ---------------ENELVALNNISYTFEKNKIYF 56
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG-YPKKHETFARISGYCEQNDIHS---- 790
++G SG+GK+TL+ G Y G+I++ Y + + I +
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKEL 114
Query: 791 ----PFV-----------TVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL----VELNP 831
V T+ + + F + +++ F M L +E +P
Sbjct: 115 RRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + +
Sbjct: 175 F-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK 223
Query: 892 DTGRTVVCTIHQPSIDIFESFDEAI 916
+TV H + E DE I
Sbjct: 224 ANNKTVFVITHTME-HVLEVADEVI 247
|
Length = 320 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 48/226 (21%)
Query: 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---- 748
+ F+ VT++ D +L VS G A++G SG+GK+T++
Sbjct: 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 749 ---DVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQ-----NDIHSPFVTVHE 797
DV +GSI I G + ++ R G Q ND T+
Sbjct: 49 RFYDVS---------SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND------TIGY 93
Query: 798 SLAFSAWLRLAPEVDSETRKMFI-EEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIA 856
++ + EV + I ++IM + ++VG G+ LS +++R+ IA
Sbjct: 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDG---YDTIVGERGLK-LSGGEKQRVAIA 149
Query: 857 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
++ NP I+ +DE TS LD + +R V GRT + H
Sbjct: 150 RAILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKK---HE 774
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P++ E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL----FDGIPREEIPRE 549
Query: 775 TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR- 833
A +Q DI TV ++L W P+ D R I +++ P
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNLTL--WDPTIPDADLV-RACKDAAIHDVITSRPGGY 605
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+ + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 606 DAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 57/183 (31%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH- 773
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +GS+ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 774 --ETFARISGYCEQN-DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
+ R G QN + S ++ E++A A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 831 PLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 882 IVM 884
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 13/193 (6%)
Query: 723 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISG---YPKKHETF 776
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 777 A--RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
A R G Q P ++V +++ A L+LA D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVD 892
+ P GLS Q++RL IA L P I+ MDEPTS LD + A + + T V
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 893 TGRTVVCTIHQPS 905
T V +HQ +
Sbjct: 199 TIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---YPK 771
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G+I G
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 772 KHETFARISGYCE-QNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF-----IEEIME 825
+ + AR + Q P V+ E L + R + + E + ++ +
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLKAKLA 128
Query: 826 LVELNP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
L+ ++ L +S VN G S ++KR I + P + +DE SGLD A I
Sbjct: 129 LLGMDEEFLNRS------VNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 883 VMRTVRNTVDTGRTVVCTIHQPSI 906
V + + R+ + H +
Sbjct: 183 VAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+ VG G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R +
Sbjct: 584 NTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICR 641
Query: 894 GRTVVCTIHQPS 905
GRTV+ H+ S
Sbjct: 642 GRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 40/209 (19%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPKKHET- 775
+N ++ G L+G SG+GKTT M + I G I I G + +
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 776 --FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP---EVDSETRKMFIEEIMELVELN 830
R GY Q P +TV E++A L P + E + +E++ LV L+
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIA------LVPKLLKWPKEKIRERADELLALVGLD 124
Query: 831 PLRQSLVG-LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--- 886
P P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 125 P--AEFADRYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQ 175
Query: 887 ---VRNTVDTGRTVVCTIHQPSIDIFESF 912
R + G+T+V H DI E+F
Sbjct: 176 EEFKRLQQELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFA----RISGYCEQN 786
G + A+MG SGAGK+TL++++AG +GSIK++ + H A +S ++N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVND--QSHTGLAPYQRPVSMLFQEN 79
Query: 787 DIHSPFVTVHESLAFSAWLRLAPEVD-SETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845
++ +TV +++ L L P + + ++ + + + V + L LP L
Sbjct: 80 NLF-AHLTVRQNIG----LGLHPGLKLNAEQQEKVVDAAQQVGIADY---LDRLP--EQL 129
Query: 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 904
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 905 S 905
S
Sbjct: 190 S 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 45/240 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ +LGP +GK+T L AL+G+L SG VT NG + + P+ A H
Sbjct: 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA-------RHRA 78
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+ +LAF Q V +++ R +G +P+ D + +A+A
Sbjct: 79 VLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAAQALAATD------- 124
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM------VGPALAMFMDEISTG 174
+ GL R +SGG+++RV ++ V +F+DE ++
Sbjct: 125 -----LSGLAG--------RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 175 LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
LD + + RQ AV+++L D I+LL G+++ G + VL
Sbjct: 172 LDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKH 773
+L G+ + G + ++G SG+GK+TL+ + G I +K++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP-EVDSETRKMFIEEIMELVELNPL 832
+ G Q P +TV E++ LAP +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENIT------LAPIKVKGMSKAEAEERALELLEK--- 122
Query: 833 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 888 RNTVDTGRTVVCTIHQ 903
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 51/241 (21%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+T L+GP +GK+T L A+ G L S SG + G + + + Y+ Q +
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+TV++ + G + L +++K + EA
Sbjct: 89 SFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE------------------KVDEA-- 123
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
L+ +G+++ D +G+ +SGGQK+RV + + +DE TG+D +
Sbjct: 124 -----LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 179 TTFQIVNCLRQNIHINSE--TAVISL--LQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
+I + L+ + E T ++ L FD +I L + ++ GP E VL
Sbjct: 174 GQKEIYDLLK---ELRQEGKTVLMVTHDLGLVMA---YFDRVICL-NRHLIASGPPEEVL 226
Query: 235 E 235
Sbjct: 227 T 227
|
Length = 254 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 62/228 (27%), Positives = 91/228 (39%), Gaps = 47/228 (20%)
Query: 3 LLLGPPASGKTTFLLALAGKLDS----SLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNH 58
+L GP SGKTT LL L G L S SLKV G+ Y +R YI Q N
Sbjct: 35 ILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL 93
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+G +T R Q V M +EL QEA
Sbjct: 94 LGFLTAR---------QNV----QMALELQPN--------------------LSYQEARE 120
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLDS 177
L+ +GL + D + +SGGQK+RV +V P L + DE + LDS
Sbjct: 121 RARAMLEAVGLGDHLDYYPHN-----LSGGQKQRVAIARALVHRPKL-VLADEPTAALDS 174
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225
+ +V +++ T I ++ ++ D I+ + DG+++
Sbjct: 175 KSGRDVVELMQKLAREQGCT--ILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSIKISGY-------PKKHE 774
VS PG + ++G SG+GKTTL+ ++GR G +T ++ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 775 TFARIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIE--EIMELVELNP 831
R G+ QN + V S + RL + E + +E VE++
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQV--SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL 142
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R V
Sbjct: 143 DR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198
Query: 892 -DTGRTVVCTIH 902
+ G VV H
Sbjct: 199 RELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 727 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR--ISGYCE 784
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 785 QNDIHSPFVTVHESLAF--SAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842
+N++ + +TV +++ S L+L ++E R+ +E V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGF---LKRLPGE 129
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 898
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 899 CTIHQPS 905
H P
Sbjct: 185 MVTHHPE 191
|
Length = 231 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-09
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 44/196 (22%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY-IS---QHDN 57
L+GP +GKTT ++G L + SG V ++G ++ P A I Q
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
E+TV E + +A+ + T +L+ ARRE+ EA
Sbjct: 86 LFPELTVLENVMVAAQAR---TGSGLLLARARREER---------------------EAR 121
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE----MMVGPALAMFMDEIST 173
+ L+ +GL + AD G+ +S GQ++R+ E + P L + +DE +
Sbjct: 122 ERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARALATDPKLLL-LDEPAA 172
Query: 174 GLDSSTTFQIVNCLRQ 189
GL+ T ++ +R+
Sbjct: 173 GLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 62/249 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA---YIS-QHDNHI 59
++GP SGK+T +AG S SG + + G ++ E P A +++ Q+ I
Sbjct: 31 IMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
++ E L + ARR + + +D + +
Sbjct: 90 PGVSNLEFLRSALN--------------ARRSA----RGEEPLD--LLDFLKLLKAK--- 126
Query: 120 TDYYLKVLGLDNCADILVGDEMIR-----GISGGQKKRVTTGEMMV-GPALAMFMDEIST 173
L +LG+D +E + G SGG+KKR +M + P LA+ +DEI +
Sbjct: 127 ----LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI-LDEIDS 173
Query: 174 GLDSSTTFQIVNCL-------RQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVY 226
GLD + + R + I +++ ++P D + +L DG+IV
Sbjct: 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DYVHVLLDGRIVK 225
Query: 227 QGPRELVLE 235
G EL E
Sbjct: 226 SGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 67/240 (27%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDNH 58
M LLGP +GKTT + LA S SG + +G ++ + +R Y+ Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
TVRE L + A +G+ P ++ V
Sbjct: 84 YPNFTVREFLDYIAWLKGI--------------------PSKEVK---ARVD-------- 112
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLDS 177
+VL L N D + I +SGG ++RV + +VG P++ + DE + GLD
Sbjct: 113 ------EVLELVNLGD--RAKKKIGSLSGGMRRRVGIAQALVGDPSILIV-DEPTAGLDP 163
Query: 178 STTFQIVNCLRQ---------NIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ N L + + HI + +L + + +L+ G++V++G
Sbjct: 164 EERIRFRNLLSELGEDRIVILSTHIVEDVE------------SLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKM----FIEEIMELVELNPLRQ 834
G Q P +TV E++ LAP +K+ E+ +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 835 SLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
VGL LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 890 TVDTGRTVVCTIHQ 903
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 34/201 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH---ET 775
L+ VS RPG A++G G+GK+TL+ +L G + T G S+ + G +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL------ 829
R GY Q D + T+ +++A A P D E EI+ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDE-------EILRAAELAGVTEF 583
Query: 830 -NPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 886 TVRNTVDTGRTVVCTIHQPSI 906
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 59/252 (23%), Positives = 96/252 (38%), Gaps = 109/252 (43%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQ---HDN 57
+ ++GP SGK++ L AL G+L+ K+SG V+ G + AY+SQ N
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG----------SIAYVSQEPWIQN 79
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
T+RE + F G +D
Sbjct: 80 ----GTIRENILF-------GKPFDE---------------------------------- 94
Query: 118 VITDYYLKVLGLDNCA-----DILV-GDEMI---RGI--SGGQKKRVTTGEMMVGPALA- 165
+ Y KV+ CA +IL GD +GI SGGQK+R+ +LA
Sbjct: 95 ---ERYEKVI--KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRI---------SLAR 140
Query: 166 --------MFMDEISTGLDSSTTFQIV-NCLRQNIHINSETAV-----ISLLQPAPETYN 211
+D+ + +D+ I NC+ + +N++T + + LL A
Sbjct: 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLPHA----- 194
Query: 212 LFDDIILLSDGQ 223
D I++L +G+
Sbjct: 195 --DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 722 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISG 781
VS PG + ++G SG+GK+TL+ LAGR G+ Y + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTA---TYIMRSGAELELYQ 74
Query: 782 YCEQND---IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI------------EEIMEL 826
E + + + VH++ +R++ + R M I ++ +E
Sbjct: 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134
Query: 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
VE++P R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 135 VEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 887 VRNTV-DTGRTVVCTIH 902
+R V D G V+ H
Sbjct: 191 LRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP----KKHETF 776
L+G++ RPG AL+G SGAGK+TL +L + +G I + G E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
AR++ + + + +V E++ + EV++ R E + L +
Sbjct: 414 ARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDTY 469
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT
Sbjct: 470 LGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRT 527
Query: 897 VVCTIHQ 903
+ H+
Sbjct: 528 TLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YP 770
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 771 KKHETFA---RISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
KK + R+ G Q +PF +++++++A+ RL D K ++EI+E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 827 VELNPLRQSL--VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
+SL L GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 876 DARAAA 881
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 68/284 (23%), Positives = 116/284 (40%), Gaps = 64/284 (22%)
Query: 2 TLLLGPPASGKTTFLLALAGKL------DSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH 55
T L+G SGK+T + G L +S + V G +T + + + ++
Sbjct: 36 TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVWD-IREKVGIVFQNP 93
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
DN TV + +AF + V R + I D DV M
Sbjct: 94 DNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRDVLADVGM--------- 133
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT-TGEMMVGPALAMFMDEISTG 174
DY D +SGGQK+RV G + V P + + +DE ++
Sbjct: 134 ----LDYI---------------DSEPANLSGGQKQRVAIAGILAVEPKI-IILDESTSM 173
Query: 175 LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELV 233
LD + QI+ +R+ + + VIS+ E N+ D +++L DG+++ QG P E+
Sbjct: 174 LDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231
Query: 234 --LEFFESMGFKCP---------QRKGVADFLQEVTSKKDQQQY 266
+E + +G P + KG++ QE+ +++ QY
Sbjct: 232 SKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 49/194 (25%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 780 SGYCEQNDIHSPFVTVHES------LAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
DI + E LAF PE+ F LR
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY----PPEIPGVKNADF------------LR 99
Query: 834 QSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
VN G S ++KR I L+ P + +DEP SGLD A +V + +
Sbjct: 100 -------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE 152
Query: 893 TGRTVVCTIHQPSI 906
G++V+ H +
Sbjct: 153 EGKSVLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 46/178 (25%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGE 61
+L GP SGKTT L +AG L +G + +G ++ + Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
+TV E L F A G + DI ++AV
Sbjct: 88 LTVAENLEFWAAFLG--------------------GEELDIAAALEAV------------ 115
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
GL A + G +S GQK+RV ++V +DE + LD++
Sbjct: 116 ------GLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP------KKH 773
+L VS + G L+G SG GK+TL +L G + G++ G K+
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 774 ETFARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
F R Q+ + P +TV + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP--LRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L VS + G A++G +G+GK+TL +L G G+I + G ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 779 IS---GYCEQNDIHSP---FV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
+ G QN P FV TV + +AF P R+ +E + + +
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGLENIGVP------REEMVERVDQALRQV 128
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
+ L P + LS Q++R+ IA L P II +DE TS LD R V+ TVR
Sbjct: 129 GMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 891 VDTGRTVVCTI 901
+ V +I
Sbjct: 187 KEQKGITVLSI 197
|
Length = 279 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 61/266 (22%), Positives = 96/266 (36%), Gaps = 83/266 (31%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKV-SGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEM 62
++GP SGK+T + G +V G + ++G + I E+
Sbjct: 35 IMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED-------------------ILEL 73
Query: 63 TVRE------TLAFS--ARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ 114
+ E LAF GV + A + P+ +K A
Sbjct: 74 SPDERARAGIFLAFQYPVEIPGVTNS--DFLRAAMNARRGARGILPEFIKELKEKA---- 127
Query: 115 EANVITDYYLKVLGLDNCADILVGDEMIR-----GISGGQKKRVTTGEMMV-GPALAMFM 168
++LGLD +E + G SGG+KKR ++++ P LA+ +
Sbjct: 128 ----------ELLGLD--------EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI-L 168
Query: 169 DEISTGLDSSTTFQI---VNCLRQNIHINSETAVISLLQPAPETYN--LFDDII-----L 218
DE +GLD + +N LR V+ + T+ L D I +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALR-----EEGRGVLII------THYQRLLDYIKPDKVHV 217
Query: 219 LSDGQIVYQGPRELVLEFFESMGFKC 244
L DG+IV G EL E E G+
Sbjct: 218 LYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 774 ETFARISGYCEQNDIHSPFVTV-HESLAFSAWLRLAPEVDSETRKMFIEEIMELV----- 827
IS Y E +HS V E + F+ L+ ++ E + E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 828 -----ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
EL + VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 883 VMRTVRNTVDTGRTVVCTIHQ 903
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 49/177 (27%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-DNHIG 60
L G +GKTT LAG + S SG + NG + +++ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+VRE EL K N
Sbjct: 86 TDSVRE-------------------ELLLGLKELD-------------------AGNEQA 107
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG-EMMVGPALAMFMDEISTGLD 176
+ LK L L + +SGGQK+R+ ++ G L + DE ++GLD
Sbjct: 108 ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 55/242 (22%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYIS 53
++GP +GK+T L + ++ S SG + G ++ + + +R I
Sbjct: 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRI-GMIF 85
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
QH N I +TV E + R T +L + +K +A+
Sbjct: 86 QHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------------ERAL---- 127
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMDEIS 172
L+ +GL + A D++ SGGQ++RV + P L + DE
Sbjct: 128 --------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARALAQQPDL-ILADEPI 173
Query: 173 TGLDSSTTFQIVNCLRQNIHINSE---TAVISL--LQPAPETYNLFDDIILLSDGQIVYQ 227
LD T+ Q+++ L++ IN E T +I+L + A + D I+ L G+IV+
Sbjct: 174 ASLDPKTSKQVMDYLKR---INKEDGITVIINLHQVDLAKK---YADRIVGLKAGEIVFD 227
Query: 228 GP 229
G
Sbjct: 228 GA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 67/249 (26%)
Query: 2 TLLLGPPASGKTTFLLALAG--KLDSSLKVSGRVTYNGHN---MGEFVPQ--RTAAYISQ 54
T L+GP GK+T L L L G V +G + + V + R + Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 55 HDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ 114
N ++ + +A+ R G+ + EL R + A
Sbjct: 89 KPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA-------------------- 123
Query: 115 EANVITDYYLKVLGL-DNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FM 168
L+ L D D L G+SGGQ++R+ + ALA +
Sbjct: 124 ---------LRKAALWDEVKDRLHA----LGLSGGQQQRLC-----LARALANEPEVLLL 165
Query: 169 DEISTGLDSSTTFQIVNCLRQNIHINSETAVI----SLLQPAPETYNLFDDIILLSDGQI 224
DE ++ LD +T +I + + + E ++ ++ Q A + D L +G++
Sbjct: 166 DEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA----RVADRTAFLLNGRL 218
Query: 225 VYQGPRELV 233
V GP E +
Sbjct: 219 VEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 56/252 (22%), Positives = 110/252 (43%), Gaps = 52/252 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEM 62
+LGP SGK+ L +AG + SG++ NG ++ P+ R +Y+ Q+ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV + +A+ ++ + +K +I+ + +A
Sbjct: 87 TVYKNIAYG-------------LKKRKVDK-------KEIERKVLEIA------------ 114
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
++LG+D+ +L + +SGG+++RV +V + +DE + LD T +
Sbjct: 115 --EMLGIDH---LL--NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
+ L++ I V+ + E + L D + ++ +G+++ G E V F
Sbjct: 168 LREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--------F 218
Query: 243 KCPQRKGVADFL 254
K P+ + VA+FL
Sbjct: 219 KKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L GV+ + G +L+G SG GK+TL+++++G G + + G R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
+ QN P++TV E++A A R+ P++ R+ +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 44/221 (19%)
Query: 710 LQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG- 768
L +EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G+++ G
Sbjct: 7 LHVSVEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 769 --------------------YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA 808
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 809 PEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSI 865
+D + +EE + L+++ L +S VN G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPEL 166
Query: 866 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
+DE SGLD A IV V + D R+ + H I
Sbjct: 167 CILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGSIKISG---YPKKH 773
L+G+S F LTAL+G SG GK+T + L R ITG IK G Y K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 774 ETFA--RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
+ + G Q PF +V++++A+ L++A D E +EE ++ +
Sbjct: 79 DLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI-- 133
Query: 832 LRQSLVGLP-GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+++ L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-------KK 772
+L+ VS + G + A++G SG+GK+TL+ +L G T +G + +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
E + G+ Q P T E++A + + +R + + + L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH 141
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
R S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 142 RPS--------ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 56/168 (33%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L V+ PG + AL+G +GAGK+TLM VL+G T G IT I Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT--INNINYNKLDHKLAA 78
Query: 779 ISG----YCEQNDIHSPFVTVHESLAFSAWLRL-------APEVDSETRKMFIEEIMELV 827
G Y E + I +TV E+L R +D R+M + M L+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIID--WREMRVRAAMMLL 131
Query: 828 ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
+ L+ L V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 132 RVG-LKVDLDEK--VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISG 781
VS R G A++G +G+GK+TL +LAG T G I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRSK 87
Query: 782 -----YCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
+ + N +P + + + L F LRL +++ E R+ I E + +V L P +
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 146 Y----PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 55/233 (23%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIG 60
++G SGK+T L LAG + SG V +G ++ + P R Y+ Q D +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
T+R+ + A P D + ++A G +T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAG-----VT 120
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
D+ V N D+ +G E RG+SGGQ++ V ++ + +DE ++ +D ++
Sbjct: 121 DF---VNKHPNGLDLQIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 181 FQIVNCLRQNIHINSETAVI-----SLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ LRQ + +T +I SLL L D II++ G+IV G
Sbjct: 177 ERLKERLRQ--LLGDKTLIIITHRPSLLD-------LVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 58/245 (23%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYIS--QHDNH 58
+T ++GP +GK+T LL++ +L K SG +T +G + + A +S + +NH
Sbjct: 29 ITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENH 85
Query: 59 IG-EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
I +TVR+ + F R+ P Y + T+ E
Sbjct: 86 INSRLTVRDLVGFG--------RF----------------P------YSQGRLTK--EDR 113
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEIS 172
I + ++ L L++ + D + +SGGQ++R + LA + +DE
Sbjct: 114 RIINEAIEYLHLEDLS-----DRYLDELSGGQRQRA-----FIAMVLAQDTDYVLLDEPL 163
Query: 173 TGLDSSTTFQIVNCLRQNIHINSETAVISL--LQPAPETYNLFDDIILLSDGQIVYQGPR 230
LD + QI+ LR+ +T V+ L + A Y+ D I+ L +G++V QG
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA-SCYS--DHIVALKNGKVVKQGSP 220
Query: 231 ELVLE 235
+ +++
Sbjct: 221 DEIIQ 225
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 8e-08
Identities = 50/247 (20%), Positives = 94/247 (38%), Gaps = 76/247 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ------RTAAYISQHD- 56
L+G SGK+T A+ G L SG + ++G ++ + + + + Q D
Sbjct: 36 LVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ-DP 91
Query: 57 ----NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
N MT+ E +A R G ++ + AR+E
Sbjct: 92 MSSLNPR--MTIGEQIAEPLRIHGKLSKKE-----ARKEAVL------------------ 126
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----F 167
L +GL ++L + +SGGQ++RV + ALA+
Sbjct: 127 ---------LLLVGVGLP--EEVL--NRYPHELSGGQRQRV-----AIARALALNPKLLI 168
Query: 168 MDEISTGLDSSTTFQIVNCLRQNIHINSETAVI------SLLQPAPETYNLFDDIILLSD 221
DE ++ LD S QI++ L++ + ++ ++ + D + ++
Sbjct: 169 ADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFITHDLGVVA------KIADRVAVMYA 221
Query: 222 GQIVYQG 228
G+IV +G
Sbjct: 222 GKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSIKISGYPKKHETFARISGYCEQN 786
G L L+G +GAGKTTL+ R G I G++K++G R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 787 DIHS-----PFVTVHESLAFSA----WLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
H P H ++ WLR D + + + V L L V
Sbjct: 58 --HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPV 111
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
G LS QR+R+ +A L PS++ +DEP +GLD ++ G +
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 898 VCTIH 902
+ T H
Sbjct: 167 LMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 9e-08
Identities = 58/256 (22%), Positives = 90/256 (35%), Gaps = 75/256 (29%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ------RTAAYISQH 55
++GP SGK+T L + G L SG V +G ++ R + Q
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDID--VYMKAVATEG 113
+TV E +AF L RE + +I V K
Sbjct: 86 GALFDSLTVFENVAF------------PL-----REH--TRLSEEEIREIVLEK------ 120
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-------- 165
L+ +GL D+ + +SGG KKRV ALA
Sbjct: 121 ----------LEAVGLRGAEDLYPAE-----LSGGMKKRV---------ALARALALDPE 156
Query: 166 -MFMDEISTGLDSSTTFQIVNCLRQ-NIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223
+ DE + GLD + I + +R + + +++ + + D I +L DG+
Sbjct: 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT--HDLDTAFAIADRIAVLYDGK 214
Query: 224 IVYQGPRELVLEFFES 239
IV +G E E S
Sbjct: 215 IVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGSIKISGYPK 771
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
E F R G Q P + LA +L P E R + + E+ +
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 892 DTGRTVVCT 900
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 9e-08
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITGSIKISGYPKK- 772
+N A G + +MG+SG+GK+T + +L AG+ +I G + P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
E + G Q P +T+ ++ + L + RK E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLG--PELL-GWPEQERK---EKALELLKL--- 116
Query: 833 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
VGL + LS ++R+ +A L A P I+ MDE S LD
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP---KKHET 775
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 776 FARISGYCEQ 785
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM----GEFVPQ--RTAAYISQ 54
M ++GP +GK+T L +L G +D + SG + +NG + G+ + + R I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 HDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGI-----KPDPDIDVYMKAV 109
N + ++V E + +L L + K D KA
Sbjct: 89 QFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLFSKED-------KAQ 127
Query: 110 ATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMD 169
A + E I D + A L SGGQ++RV +V + D
Sbjct: 128 ALDALERVGILDKAYQR------ASTL---------SGGQQQRVAIARALVQQPKIILAD 172
Query: 170 EISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229
E LD + ++++ L+ I+ VI L D II L G+IV+ GP
Sbjct: 173 EPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
Query: 230 -RELVLEFFE 238
EL E +
Sbjct: 232 ASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEM 62
++GP +GK+T L +AG ++ SG + N + P QR + + Q +N +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TVR+ + G+ P +K A + ++
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEKVVDAA-- 113
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+ +G+ + D L +SGGQ++RV +V P + +DE + LD +
Sbjct: 114 --QQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ ++Q T ++ + + + I ++S G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 44/227 (19%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEM 62
+LGP +GK+T L +AG SG + NG + P +R + + Q +N +
Sbjct: 30 ILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV + + G+ P +K A + ++
Sbjct: 87 TVAQNIGL------------------------GLSPG------LKLNAEQREKVEAA--- 113
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+GL L G+ +SGGQ++RV +V + +DE + LD + +
Sbjct: 114 -AAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229
++ + Q + + ++ + + + D ++ L +G+I QG
Sbjct: 168 MLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 35/197 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GSIKISGYPKKHETF 776
L +S + +PG ++G +G+GK++L+ L R + G I + IS H+
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIG-LHDLR 77
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLR--LAPE---VDSETRKMFIEEIMELVELNP 831
+RIS Q+ P + FS +R L P D E + + +E V L
Sbjct: 78 SRISI-IPQD----PVL-------FSGTIRSNLDPFGEYSDEE-----LWQALERVGLKE 120
Query: 832 LRQSLV-GLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
+SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++ +
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 886 TVRNTVDTGRTVVCTIH 902
T+R TV+ H
Sbjct: 181 TIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YP 770
L G+S + A +G SG GK+T + D++ + + G I+I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 771 KKHET--FARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV 827
K + + G Q +PF ++ E++A+ LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 828 EL-----NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 883 V 883
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 733 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YPKKHETFARIS-G 781
+TAL+G SG GK+TL+ D++ G K ITG + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 782 YCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
Q +PF ++++E++A+ LR D + +E + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 44/180 (24%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
L ++ +TAL+G SG GK+T + D++ K I G + + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDIYK 74
Query: 774 ETFARIS-----GYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV 827
G Q +PF +++++++A+ P K ++EI+E
Sbjct: 75 SDIDVNQLRKRVGMVFQQP--NPFPMSIYDNVAY------GPRTHGIKDKKKLDEIVE-- 124
Query: 828 ELNPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L+ + + L GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 125 --KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI----TGSIKISGYPKKHE 774
LN VS + + G AL+G SG GK+TL +L G + G + K++ +K
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRK-- 85
Query: 775 TFARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
F R Q+ I + P TV E + LR +D R E++ V+L+
Sbjct: 86 AFRRDIQMVFQDSISAVNPRKTVREIIREP--LRHLLSLDKAERLARASEMLRAVDLDD- 142
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 143 -SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 2e-07
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMG---EFVPQRTAAYISQHDNHIG 60
LLGP +GKTT + + G L SG + G ++ E V +R Y+ + +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYE 86
Query: 61 EMTVRETLAFS 71
+TVRE L S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 58/247 (23%), Positives = 95/247 (38%), Gaps = 53/247 (21%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY-IS---QHDN 57
L+GP +GKTT + G S SG V + G ++ P R A I+ Q
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITR 89
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+TV E +A A + L+ R K + +E
Sbjct: 90 LFPGLTVLENVAVGAHAR---LGLSGLLGRPRARKE------------EREARERAREL- 133
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE----MMVGPALAMFMDEIST 173
L+ +GL AD G+ +S GQ++R+ E + P L + +DE +
Sbjct: 134 ------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARALATQPKL-LLLDEPAA 178
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPE-----TYNLFDDIILLSDGQIVYQG 228
GL+ T ++ +R+ + V LL E L D I++L+ G+++ +G
Sbjct: 179 GLNPEETEELAELIRE---LRDRGGVTILLI---EHDMKLVMGLADRIVVLNYGEVIAEG 232
Query: 229 PRELVLE 235
E V
Sbjct: 233 TPEEVRN 239
|
Length = 250 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 65/245 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIG 60
++G SGK+T L L G + G V +G ++ + P +R Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAG----IKPDPDIDVYMKAVATEGQEA 116
T+R+ +A A + ++ A AG ++ PD
Sbjct: 552 YGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD--------------- 589
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGL 175
GLD + +G E R +SGGQ++ V ++ P + + +DE ++ +
Sbjct: 590 -----------GLD----MQIG-ERGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAM 632
Query: 176 DSSTTFQIVNCLRQNIHINSETAVI-----SLLQPAPETYNLFDDIILLSDGQIVYQGPR 230
D+ + + + L++ + +T V+ SLL L D II++ +G+IV GP+
Sbjct: 633 DNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLD-------LVDRIIVMDNGRIVADGPK 683
Query: 231 ELVLE 235
+ VLE
Sbjct: 684 DQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 44/210 (20%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
L ++ G L A++G G+GK++L+ L G K G S+ + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG----SVSVPG--------- 66
Query: 778 RISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LR 833
I+ Y Q P++ T+ E++ F D E E++++ L P L
Sbjct: 67 SIA-YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 834 ------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 886
+ +G G+N LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 887 VRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916
+ + +T + HQ + + D+ +
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIV 198
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
L ++ + +TAL+G SG GK+TL+ D++ G + ITG I +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGEN-IM 76
Query: 774 ETFA------RISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
++ A R G Q +PF +++E++A+ R+ E + +T +E+ ++
Sbjct: 77 DSGADVVALRRKIGMVFQRP--NPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKG 132
Query: 827 VEL-----NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
L + L S + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 133 AALWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 30/208 (14%)
Query: 708 MKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKIS 767
M+L V L +S R G + L+G +GAGK+TL+ +AG G +GSI+ +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 768 G-----YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE 822
G + AR Y Q + V + L L + +E + E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 823 IMELVELNPLRQSLVGLPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSG 874
+ E + L +G VN LS E QR RL AV L NP+ ++ +DEP +
Sbjct: 110 VAEALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 875 LDARAAAIVMRTVRNTVDTGRTVVCTIH 902
LD A + R + G VV + H
Sbjct: 164 LDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 33/171 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSIKISGYPKKHETFA 777
+N S G + +MG+SG+GK+TL+ R I G I + G + A
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDG-----KDIA 93
Query: 778 RIS------------GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
++S Q+ P TV E++AF ++ P+ + E R E +E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALE 150
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
LV L N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 151 LVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 67/247 (27%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA----AYISQHDN 57
LLG +GKTT L + G L SG + ++G ++ P A Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HIGEMTVRETL--AFSARCQGVGTR-----YDMLMELARREKAAGIKPDPDIDVYMKAVA 110
E+TV E L AR + Y++ L R K
Sbjct: 86 IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLA--------------- 130
Query: 111 TEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMD 169
G +SGG+++ + +M P L + +D
Sbjct: 131 --GT------------------------------LSGGEQQMLAIARALMSRPKLLL-LD 157
Query: 170 EISTGLDSSTTFQIVNCLRQNIHINSE-TAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
E S GL +I +R+ + E ++ + Q A + D +L G++V +G
Sbjct: 158 EPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214
Query: 229 PRELVLE 235
+L
Sbjct: 215 TAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 67/276 (24%), Positives = 103/276 (37%), Gaps = 85/276 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTA----AYISQHDN 57
++G +GK+T LL L L+ SG V +G ++ R I QH N
Sbjct: 37 IIGYSGAGKST-LLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ TV E +AF +ELA KA +K E
Sbjct: 94 LLSSRTVFENVAFP-------------LELAGVPKAE-----------IKQRVAE----- 124
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEIS 172
L+++GL + AD +SGGQK+RV + ALA + DE +
Sbjct: 125 -----LLELVGLSDKAD-----RYPAQLSGGQKQRVA-----IARALANNPKILLCDEAT 169
Query: 173 TGLDSSTTFQIVNCLRQNIH---------INSETAVISLLQPAPETYNLFDDIILLSDGQ 223
+ LD TT I+ L+ I+ I E V+ + D + +L G+
Sbjct: 170 SALDPETTQSILELLKD-INRELGLTIVLITHEMEVVK---------RICDRVAVLDQGR 219
Query: 224 IVYQGPRELVLEFFESMGFKCPQRKGVADFLQEVTS 259
+V +G V E F + P+ +F+ E
Sbjct: 220 LVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 44/223 (19%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEM 62
LLGP GKTT L +AG + + SGR+ G ++ + P R A + Q+ M
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM 87
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV + +AF + + V P +ID ++ VA
Sbjct: 88 TVYDNIAFGLKLRKV--------------------PKDEIDERVREVA------------ 115
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
++L +++ + D + +SGGQ++RV G +V MDE + LD+ Q
Sbjct: 116 --ELLQIEH-----LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225
+ L+ + T I + E + D I +++DGQI
Sbjct: 169 MRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPKK---H 773
L ++ G AL+G SGAGKT+L++ L G ++ GS+KI+G +
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
E++ + + QN P T+ +++ L S+ E++ + +E +
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVL------LGNPDASD------EQLQQALENAWVS 465
Query: 834 QSLVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
+ L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM
Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
Query: 885 RTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914
+ + N +T + HQ ++ +D+
Sbjct: 526 QAL-NAASRRQTTLMVTHQ--LEDLAQWDQ 552
|
Length = 588 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 61/236 (25%), Positives = 90/236 (38%), Gaps = 54/236 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM----GEFVPQRTAAYISQHDNHI 59
LLGP +GKTT + L L + SGR T GH++ E +R + Q +
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV--RRRIGIVFQDLSVD 85
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
E+T E L AR GV E R
Sbjct: 86 DELTGWENLYIHARLYGVPGA-----ERRER----------------------------- 111
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
D L +GL AD LV + SGG ++R+ +V +F+DE + GLD T
Sbjct: 112 IDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
Query: 180 TFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQIVYQG-PREL 232
+ + + + E + LL E L D + ++ G+I+ +G P EL
Sbjct: 167 RAHVWEYIEK---LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 52/171 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
L+GP GK+T L +AG + SG V +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V + +A QGV RE+A ++ V G E + Y
Sbjct: 90 VLDNVALGLELQGVPKA-------EARERAEE---------LLELVGLSGFE-----NAY 128
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRV----TTGEMMVGPALAMFMDE 170
L SGG ++RV + V P + + +DE
Sbjct: 129 PHQL------------------SGGMRQRVALARA---LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 53/242 (21%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNG---HNMGEFVPQRTAAYISQHDN 57
+T LLGP SGK+T L LAG L +G V G H + R A + Q +
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+TVR+ +A G P + A +
Sbjct: 86 TAVPLTVRDVVAL------------------------GRIP------HRSLWAGDSPHDA 115
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEIS 172
+ D L L + AD + +SGG+++RV V ALA + +DE +
Sbjct: 116 AVVDRALARTELSHLAD-----RDMSTLSGGERQRVH-----VARALAQEPKLLLLDEPT 165
Query: 173 TGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232
LD + + +R+ + V++ L + D +++L G++V GP
Sbjct: 166 NHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223
Query: 233 VL 234
VL
Sbjct: 224 VL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 63/253 (24%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHI 59
+ LLGP SGKTT L +AG L+ SG + + G + + Q R ++ QH
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
MTV + +AF R + R E R K +
Sbjct: 87 RHMTVFDNVAFGLRVKPRSERPP---EAEIRAKVHEL----------------------- 120
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEISTG 174
LK++ LD AD +SGGQ++RV ALA+ +DE
Sbjct: 121 ----LKLVQLDWLADRYPAQ-----LSGGQRQRVALAR-----ALAVEPKVLLLDEPFGA 166
Query: 175 LDSSTTFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQI-------- 224
LD+ ++ LR+ ++ E V ++ E + D +++++ G+I
Sbjct: 167 LDAKVRKELRRWLRR---LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223
Query: 225 VYQGPR-ELVLEF 236
VY P V F
Sbjct: 224 VYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 713 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGSIKI 766
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG + +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 767 SGYP 770
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (127), Expect = 4e-07
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGSIKISGYPKKHET--FARISGYC 783
+ G TAL+G +G+GK+TL+ L G + T G + G I +S K+ E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 784 EQNDIHSPFV-TVHESLAFSAWLRLAPE---VDSETRKMFIEEIMELVELNPLRQSLVGL 839
Q F TV + +AF P+ + E + E +E+V L +
Sbjct: 90 FQFPESQLFEETVLKDVAF------GPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKS 141
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
P LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 142 P--FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 900 TIH 902
H
Sbjct: 200 VTH 202
|
Length = 288 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-07
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 728 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET---FARIS-GYC 783
F +TA +G +GAGKTT + +L G +G++ + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 784 EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
Q++I +TV E + F A L+ E ++ +E ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 900
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 901 IHQ 903
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 48/188 (25%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L+GV+ +TALMG SG+GK+TL+ V + I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 780 SG--YCEQNDIHS--------------------PFVTVHESLAFSAWL-RLAPEVDSETR 816
SG Y + DI P +++ E++A L RL +++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV-----KSK 116
Query: 817 KMFIEEIMELVELNPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873
K E + +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 117 KELQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 874 GLDARAAA 881
LD A
Sbjct: 176 NLDPENTA 183
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSIKISG---YPKKHE 774
L G+ F +TAL+G SG GK+T + L G ITG++ + G Y +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 775 T--FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL--- 829
+ G Q PF +++E++ + LRLA D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 830 --NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
LL +S G L L G +GAGKTTL+ ++AG G I K +
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 780 SGYC---EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
C ++ I +P++T+ E+ + ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 897 VVCTIHQ 903
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 59/202 (29%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L + + VL + GVSG+GK+TL+ G Y +G ++ + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN----PLRQSL 836
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 895 RTVVCTIHQPSIDIFESFDEAI 916
TV+ H D+ S D I
Sbjct: 140 NTVILIEHNL--DVLSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 39/215 (18%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKK 772
+ L VS G A++G +G+GK+T+ +L G + G IKI G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 773 HETFARIS---GYCEQN-DIHSPFV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
E I G QN D + F+ TV + +AF + V + K I+++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 827 VELNPL--RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 883
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 884 --MRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916
M +R T +T+ I I DEAI
Sbjct: 183 KIMVDLRKTRK--KTL--------ISITHDMDEAI 207
|
Length = 271 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH--E 774
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P + +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRD 70
Query: 775 TFARISGYC-EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 834 QSL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 887 VRNTVDTGRTVVCTIHQP 904
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 51/208 (24%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH----- 55
L+GP +GK+T L + + L SG + NG ++ + R Y+ +
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRAIPYLRRKIGVVF 84
Query: 56 -DNH-IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
D + + V E +AF+ GV R E+ +R AA
Sbjct: 85 QDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------------------- 120
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIST 173
L+++GL + + +SGG+++RV +V + DE +
Sbjct: 121 ----------LELVGLSHKH-----RALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVIS 201
LD TT++I+N L++ I+ T V++
Sbjct: 166 NLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIK-ISGYPKKHETF 776
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R G+ Q+ +TV +++AF L + P + ++ +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 45/188 (23%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YP 770
L V +TA +G SG GK+T + D + G + +TG I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 771 KKH---ETFARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETR-KMFIEEIME 825
+ E AR+ G Q +PF +++E++A+ P + R K ++EI+E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAY------GPRIHGLARSKAELDEIVE 141
Query: 826 LVELNPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
LR++ GL PG GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 876 DARAAAIV 883
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-07
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 35/186 (18%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI-EEIM------------ELV 827
E+ I +H+ LA L E+ S +F+ EI
Sbjct: 78 D-TERAGI----AIIHQELA------LVKEL-SVLENIFLGNEITPGGIMDYDAMYLRAQ 125
Query: 828 ELNPLRQ-SL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+L L Q L P V L Q++ + IA L ++ +DEPT+ L A++
Sbjct: 126 KL--LAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182
Query: 884 MRTVRN 889
+ +R+
Sbjct: 183 LDIIRD 188
|
Length = 506 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-07
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 32/210 (15%)
Query: 695 FDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754
FD+V++S D QGV VS +PG A++G +GAGK+TL+++L +
Sbjct: 337 FDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL--Q 382
Query: 755 KTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAF----SAWLRLAPE 810
+ +G I I G I + + V ++ F +R+
Sbjct: 383 RVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434
Query: 811 --VDSETRKMF-IEEIMELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 866
D E R + + +E P ++VG G LS +R+RL IA L+ +P I+
Sbjct: 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPIL 493
Query: 867 FMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
+DE TS LD A V + + + GRT
Sbjct: 494 ILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIK-ISGYPKKH 773
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I K I+ +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-L 832
++ E + S +TV E+LA + R F E I + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 893 TGRTVVCTI 901
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 781 GYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR-QSLV 837
D+ T+ ++A+ A + E R + + V+ PL + +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR-TEQADRAEIE-RALAAAYAQDFVDKLPLGLDTPI 463
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
G GV LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 464 GENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 36/230 (15%)
Query: 704 MPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 761
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 762 GSIK-ISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
+ +S K E + + YC Q TV ++L F +R R +
Sbjct: 62 FEGEDVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAAL 114
Query: 821 EEIMELVELNPLRQSLVGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
+ + LP + LS +++R+ + L P I+ +DE TS
Sbjct: 115 DLLAR-----------FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163
Query: 875 LDARAA----AIVMRTVRNTVDTGRTVVCTIHQP--SIDIFESFDEAIPG 918
LD ++ R VR + V+ H +I + PG
Sbjct: 164 LDESNKRNIEEMIHRYVR---EQNVAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-07
Identities = 64/260 (24%), Positives = 95/260 (36%), Gaps = 88/260 (33%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM----GEFVPQR-TAAYISQH--- 55
L+G SGK+T LAG L S SG + ++G ++ GE R + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 56 --DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
+ MTV + LA R G A R + ++ V
Sbjct: 379 SLNPR---MTVGDILAEPLRIHG-------GGSGAERRAR--------VAELLELV---- 416
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FM 168
GL + L D +SGGQ++RV + ALA+ +
Sbjct: 417 --------------GLP--PEFL--DRYPHELSGGQRQRVA-----IARALALEPKLLIL 453
Query: 169 DEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLF------------DDI 216
DE + LD S Q++N L+ + E + TY LF D +
Sbjct: 454 DEPVSALDVSVQAQVLNLLKD---LQEELGL---------TY-LFISHDLAVVRYIADRV 500
Query: 217 ILLSDGQIVYQGPRELVLEF 236
++ DG+IV +GP E V E
Sbjct: 501 AVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSIKISGYPKKHET 775
V +N VS R G + +MG+SG+GK+TL+ R I +G + I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDG-----QD 87
Query: 776 FARIS------------GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI 823
A +S Q+ P TV E++AF L + V R+ E
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQ-GVPRAEREERAAEA 144
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ELV L + LS ++R+ +A L +P I+ MDE S LD
Sbjct: 145 LELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 141 MIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAV 199
+ +SGGQ++RV ++ P L + +DE ++GLD ++ +++ LR+ V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 200 ISLLQPAPETYNLFDDIILLSDGQ 223
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 52/214 (24%)
Query: 698 VTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 757
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 758 GYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLA--------FSAWLRLAP 809
G I+I G + P + SL FS +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 810 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869
+ E EEI + ++ G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 870 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
E T+ +D A++ +T+R T T++ H+
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDI 788
G LT ++G G GK++L+ + G + G + S K P T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 789 HSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIE--EIMELVELNPL-RQSLVGLPGV 842
P++ TV E++ F + + + K + + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 900
N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 901 IHQ 903
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 733 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHS-- 790
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 791 ------PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844
P +TV E++AF ++ P + R + E + +V+L Q +
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQR-----KPHQ 144
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 71/247 (28%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNH 58
T L+G +GK+T L L G L + G + NG ++ + P ++ +++SQ+ +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQN-PY 405
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ T+RE + + +PD D + A +A +
Sbjct: 406 LFAGTIRENILLA-------------------------RPD-ASDEEIIAAL---DQAGL 436
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
++ K GLD V E G+SGGQ +R+ ++ PA + +DE + LD
Sbjct: 437 -LEFVPKPDGLD-----TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD-- 488
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLF------------DDIILLSDGQIVY 226
+E ++ LQ + + D I++L +G++V
Sbjct: 489 --------------AETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVE 534
Query: 227 QG-PREL 232
QG EL
Sbjct: 535 QGTHEEL 541
|
Length = 559 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 66/237 (27%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNG-----------HNMGEFVPQRTAAYI 52
LLGP +GKTT L LAG L+ +G T +G +G FV T Y
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLG-FVSDSTGLY- 90
Query: 53 SQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
+T RE L + A G+ +
Sbjct: 91 -------DRLTARENLEYFAGLYGL----------------------------------K 109
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
G E + LG++ D VG G S G +++V +V + +DE +
Sbjct: 110 GDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPT 164
Query: 173 TGLDSSTTFQIVNCLRQNIHINSE-TAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
TGLD T + +R + + ++ E L D +++L G++VY+G
Sbjct: 165 TGLDVMATRALREFIR---QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 43/189 (22%), Positives = 63/189 (33%), Gaps = 48/189 (25%)
Query: 6 GPPASGKTTFLLALAGKLDSSLKVSGRVTYNG--HNMGEFVPQRTAAYISQHDNHIGEMT 63
GP GKTT L LAG L SG V +NG P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
E L F A G G + + LA
Sbjct: 90 ALENLHFWAAIHG-GAQRTIEDALAA---------------------------------- 114
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQI 183
+GL D+ +S GQ++R+ + + A +DE +T LD + +
Sbjct: 115 ---VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 184 VNCLRQNIH 192
LR ++
Sbjct: 167 AGLLRAHLA 175
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 63/245 (25%)
Query: 1 MTLLLGPPASGKTTFLLALAGKL---DSSLKVSGR-VTYNGHNMGEFVPQRTAAYISQH- 55
M LLGP +GK+T L G L + + G + Y+ ++ E ++T + Q+
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV--RKTVGIVFQNP 87
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
D+ + TV E +AF G+ E+ +R K A +KAV EG E
Sbjct: 88 DDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA-----------LKAVGMEGFE 131
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT-TGEMMVGPALAMFMDEISTG 174
++ +SGGQKKRV G + + P + + +DE ++G
Sbjct: 132 -----------------------NKPPHHLSGGQKKRVAIAGILAMKPEI-IVLDEPTSG 167
Query: 175 LDSSTTFQIVNCLRQNIHINSE--TAVISL----LQPAPETYNLFDDIILLSDGQIVYQG 228
LD QI+ L +N E T +IS L P Y D + ++SDG+I+ +G
Sbjct: 168 LDPMGASQIMKLLYD---LNKEGITIIISTHDVDLVP---VYA--DKVYVMSDGKIIKEG 219
Query: 229 -PREL 232
P+E+
Sbjct: 220 TPKEV 224
|
Length = 275 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 27/158 (17%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQND 787
G TA++G +G GK+TL+ L+ T G + + G +H + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 788 IHSPFVTVHESLA---------FSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
+TV E +A F+ W + + ++ T+ M I L QS
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS--- 140
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 ---VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 738 GVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGY------PKKHETFARISGYCEQNDIHS 790
G SG GK+TL+ ++AG + IT G + I P + R G Q+
Sbjct: 36 GPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE-----RGVGMVFQSYALY 87
Query: 791 PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL--RQSLVGLPGVNGLSTE 848
P ++V E+++F L+LA E + ++ E+++L L R+ LS
Sbjct: 88 PHLSVAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGG 137
Query: 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
QR+R+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR--ISGYCEQN 786
G A++G SGAGK+TL++++AG T +GS+ ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 787 DIHSPFVTVHESLAFSAWLRLAP--EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844
++ +TV +++ L L P ++++ R+ + I + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIG----LGLNPGLKLNAAQREK-LHAIARQMGIEDL---LARLPG--Q 129
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHS----- 790
L+G SGAGK++L+ VL + +G++ I+G H F++ D+
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAG---NHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 791 -------PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
P +TV E+L A R+ + +L++ L+ P
Sbjct: 88 FQQYNLWPHLTVQENL-IEAPCRVLGLSKDQAL----ARAEKLLKRLRLKPYADRYP--L 140
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 51/232 (21%)
Query: 2 TLLLGPPASGKTTFLLALAG--KLDS-SLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNH 58
++GP +GK+T L A+ G K S S++V G+ +VPQR + +
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI------DR 81
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
++VR+ ++ + + KA + EA
Sbjct: 82 DFPISVRD-----------------VVLMGLYGHKGLFRR------LSKADKAKVDEA-- 116
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
L+ +GL AD I +SGGQ++RV +V + +DE G+D
Sbjct: 117 -----LERVGLSELAD-----RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 179 TTFQIVNCLRQNIHINSETAVISL--LQPAPETYNLFDDIILLSDGQIVYQG 228
T I LR+ + T ++ L E FD ++LL + +V G
Sbjct: 167 TQEDIYELLRE-LRREGMTILVVTHDLGLVLE---YFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 45/238 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
++G SGK+T L L G GR+ +G ++ + R Y+ Q D
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DP 556
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ ++RE +A + ++E A+ AG
Sbjct: 557 FLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF------------------ 591
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ L D VG E +SGGQ++R+ ++ + +DE ++ LD
Sbjct: 592 --------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
T I+ L Q + + +I+ T D II+L G+IV QG E +L
Sbjct: 643 ETEAIILQNLLQILQGRT-VIIIA---HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 67/260 (25%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQ------H 55
LLGP GKTT L +AG S SG + +G ++ + VP +R + Q H
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPPEKRPIGMVFQSYALFPH 91
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
MTV E +AF +++ ++ K A IK +
Sbjct: 92 ------MTVEENVAFG-------------LKVRKKLKKAEIKA--------RVEE----- 119
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGL 175
L+++GL+ D +SGGQ++RV +V + +DE + L
Sbjct: 120 -------ALELVGLEG-----FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 176 DSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVL 234
D+ Q+ L++ + + + E + D I +++DG+I G P E+
Sbjct: 168 DAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI-- 224
Query: 235 EFFESMGFKCPQRKGVADFL 254
++ P + VADF+
Sbjct: 225 -------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 4 LLGPPASGKTTFLLAL--AGKLDSSLKVSGRVTYNGHNMGE-----FVPQRTAAYISQHD 56
L+GP GKTTFL A+ L +V+GR+ +G ++ +R + Q
Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
N M+V + + + G+ R D LME+A R D ++ +K AT
Sbjct: 95 NPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-EVKDRLKTPAT----- 147
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
G+SGGQ++R+ + + MDE ++ LD
Sbjct: 148 ---------------------------GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
++T +I + + + T +I + + + D G +V GP + +
Sbjct: 181 PASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Query: 732 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISG---YPKKHETFA--RISGYC 783
+ ALMG SG GK+TL+ + L + G +++ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 784 EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL--------NPLRQS 835
Q P +T+++++A ++L V S+ +E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
L P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 896 TVVCTIHQPS 905
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+E VE++ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 884 MRTVRNTV-DTGRTVVCTIH 902
+ +R V + G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 34/173 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSIKISGYPKKHETFAR 778
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 779 ISGYCEQNDIHS-PFVT--VHESLAFSAWLR----LA-PEVDSETRKMFIEEIMELVELN 830
I+ Y E + V+ VH FSA LR LA P E + E+++ V L
Sbjct: 404 IADYSEAALRQAISVVSQRVH---LFSATLRDNLLLAAPNASDEA----LIEVLQQVGLE 456
Query: 831 PLRQSLVGLP---GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
L + GL G G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 457 KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 733 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGY----PKKHETFARIS- 780
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLRQSLVGL 839
G Q P +++++++AF R+ +EE ++ L + ++ L
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 143 PGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 86/257 (33%)
Query: 10 SGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEFVPQRTA-------AYISQHD---- 56
SGK+ A+ G L V G + ++G ++ + A I Q D
Sbjct: 42 SGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTS 100
Query: 57 -NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
N + MT+ + +A R G G E A
Sbjct: 101 LNPV--MTIGDQIAEVLRLHGKGLSKKEAKERAIE------------------------- 133
Query: 116 ANVITDYYLKVLGLDNCADILVGD----EMIRGISGGQKKRVTTGEMMVGPALAM----- 166
L+++G+ + L E+ SGG ++RV M+ ALA+
Sbjct: 134 -------LLELVGIPDPERRL--KSYPHEL----SGGMRQRV-----MIAMALALNPKLL 175
Query: 167 FMDEISTGLDSSTTFQIVNCLRQNIHINSE--TAVI------SLLQPAPETYNLFDDIIL 218
DE +T LD + QI++ L+ + E TA+I ++ + D + +
Sbjct: 176 IADEPTTALDVTVQAQILDLLK---ELQREKGTALILITHDLGVV------AEIADRVAV 226
Query: 219 LSDGQIVYQGPRELVLE 235
+ G+IV +GP E + +
Sbjct: 227 MYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 60/257 (23%), Positives = 89/257 (34%), Gaps = 56/257 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEM 62
LLGP GKTT L LAG SG + +G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPRA-----EIKPRVLEA---------------------------- 84
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV-GPALAMFMDEISTGLDSSTTF 181
L L + D +SGGQ++RV +V P + + +DE + LD
Sbjct: 85 ----LRLVQLEEF--ADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESM 240
Q+ L+ I + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 241 GFKCPQRKGVADFLQEV 257
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL------ 832
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---YPKKHETF 776
+L G++ + G + A+MG +G+GK+TL V+AG + G I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 777 ARISGYCE-QNDIHSPFVTVHESLAFSAWLRLA----------PEVDSETRKMFIEEIME 825
A + + Q I P V+ + +LRLA PE+D I E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 826 LVELNP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
LV ++P L ++ VN G S ++KR I + + + +DE SGLD A I
Sbjct: 136 LVGMDPSFLSRN------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 883 VMRTVRNTVDTGRTVVCTIH 902
+ + + + +++ H
Sbjct: 190 IAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 46/226 (20%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGS-IK----- 765
+LNG+S G A++G SGAGK+T++ DV +G T I G I+
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDVTQQ 333
Query: 766 -----ISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
I P+ F ND T+ ++ + A EV + I
Sbjct: 334 SLRRAIGIVPQDTVLF---------ND------TIAYNIKYGRPDATAEEVGAAAEAAQI 378
Query: 821 EEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
+ ++ L + VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 379 HDFIQ--SLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTE 435
Query: 881 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAIPGIEKIKNGY 926
+ +R V GRT + H+ S I DE I + NG
Sbjct: 436 QAIQAALRE-VSAGRTTLVIAHRLSTII--DADEII----VLDNGR 474
|
Length = 497 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
LL+ ++ RPG + G SGAGKT+L+ LAG + GS +I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-- 459
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
+ Q + P T+ E+L + AP+ + ++ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 839 L-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 898 VCTIHQPSIDIFES 911
+ H+P++ F S
Sbjct: 568 ISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGY 782
VS G + AL+G SG GK+TL+ +LAG + G I + G H + R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINM 95
Query: 783 CEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842
Q+ P +TV +++AF P+ + +R + E++ LV + +
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKR-----KP 147
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 27/177 (15%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKH- 773
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 774 ------ETFARISGYCEQNDIHSPFVTVHESL--AFSAWLRLAP-----EVDSETRKMFI 820
TF + + E I + V H+ L + L P E ++ R
Sbjct: 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 821 EEIMELVEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 138 LERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 59/266 (22%), Positives = 96/266 (36%), Gaps = 89/266 (33%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG--- 60
+LG SGK+T L + G L G + +G + +PQ + + + +G
Sbjct: 39 ILGGSGSGKSTLLRLILGLL---RPDKGEILIDGED----IPQLSEEELYEIRKRMGVLF 91
Query: 61 -------EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDID--VYMKAVAT 111
+TV E +AF L E + P+ I V MK
Sbjct: 92 QQGALFSSLTVFENVAF------------PLREHTK-------LPESLIRELVLMK---- 128
Query: 112 EGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA------ 165
L+++GL D +SGG +KRV ALA
Sbjct: 129 ------------LELVGLR--GA--AADLYPSELSGGMRKRV---------ALARAIALD 163
Query: 166 ---MFMDEISTGLDSSTTFQIVNCLRQNIHINSE--TAVISLLQPAPETYNLFDDIILLS 220
+F+DE ++GLD + I +R +N VI + + D + +L+
Sbjct: 164 PELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLDSLLTIADRVAVLA 220
Query: 221 DGQIVYQGPRE--------LVLEFFE 238
DG+++ +G E V +FF
Sbjct: 221 DGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
+L G+ G + AL+G +GAGK+TLM ++AG +G+++I G P T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 779 ISGY----CEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL-VELNPLR 833
Q + P ++V E++ F L S +KM + + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDL-- 134
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
S G L R+ + I L+ + I+ +DEPT+ L
Sbjct: 135 DSSAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 31/183 (16%)
Query: 711 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGS 763
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 764 IKISGYPKKHETFARISGYCEQ--------NDIHSPFVTVHESLAFSAWLRL-APEVDSE 814
I G P + ++ + N +P + V + + LR+ P + +
Sbjct: 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE--EGLRVHQPTLSAA 399
Query: 815 TRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873
R+ + +ME V L+P R P S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 874 GLD 876
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 55/264 (20%), Positives = 90/264 (34%), Gaps = 91/264 (34%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKV-SGRVTYNGHNMGE---------------FVPQR 47
++G SGK+T LAL G L ++ SG V +G ++ + Q
Sbjct: 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99
Query: 48 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMK 107
++ MT+ D + E R
Sbjct: 100 PMTSLN------PVMTIG----------------DQIREALRLHGKG------------- 124
Query: 108 AVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-- 165
EA L+ +GL + D +SGG ++RV M+ ALA
Sbjct: 125 ----SRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRV-----MIAMALALK 172
Query: 166 ---MFMDEISTGLDSSTTFQIVNCLRQNIHINSET-----------AVISLLQPAPETYN 211
+ DE +T LD +T QI++ L+ + E V++
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKD---LQRELGMAVLFITHDLGVVA---------E 220
Query: 212 LFDDIILLSDGQIVYQGPRELVLE 235
L D ++++ G+IV GP E +L
Sbjct: 221 LADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----E 774
+L +S F G + ++G SGAGK+TL+ ++ + GSI I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 775 TFARISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
+I +Q P + TV +++ + L+ VD +E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVD-------VEYYLSIVGLN- 121
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 44/206 (21%), Positives = 68/206 (33%), Gaps = 49/206 (23%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM-----GEFVPQRTAAYISQH- 55
LLG +GK+T LL L G L SG V +G + G ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
D+ + V + +AF G+ E
Sbjct: 78 DDQLFAADVDQDVAFGPLNLGL----------------------------------SEAE 103
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGL 175
L +G + +SGG+KKRV + + +DE + GL
Sbjct: 104 VERRVREALTAVGASGLRE-----RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 176 DSSTTFQIVNCLRQNIHINSETAVIS 201
D + Q++ LR + T VIS
Sbjct: 159 DPAGREQMLAILR-RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 39/203 (19%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGSIKISGYPKK 772
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLR--LAPEVDSETRKMFIEEIMELVELN 830
H +R+S + + + + FS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 831 PLRQSLVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
+ +SL G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 883 VMRTVRNTVDTGRTVVCTIHQPS 905
+ + V T RTVV H+ S
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 69/254 (27%), Positives = 107/254 (42%), Gaps = 50/254 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+ V+ RP + ALMG +GAGK+TL+ L G +K +GSI G ++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKS--- 66
Query: 779 ISGYCEQNDIHSPFVTVHESLAF--------SAWLRLAPE----VD-----SETRKMFIE 821
S +N I VH+ L + WL P VD +T+ +F
Sbjct: 67 -SKEALENGIS----MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF-- 119
Query: 822 EIMEL-VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
EL ++++P + V LS Q + + IA N I+ MDEPTS L +
Sbjct: 120 --DELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170
Query: 881 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAIPGIEKIKNGYNPATWMLEVTAASQ 940
+ +R + G +V H+ +IF+ DE I +++G AT L +
Sbjct: 171 NHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE----ITILRDGQWIATQPLAGLTMDK 225
Query: 941 EVAL--GVDFTDIF 952
+A+ G T F
Sbjct: 226 IIAMMVGRSLTQRF 239
|
Length = 491 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 32/162 (19%)
Query: 733 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGSIKISG---YPKKHETFA--RISGYCE 784
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 785 QNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV--------EL-NPLRQ 834
Q +PF +++++++A+ P + K +++I+E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAY------GPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 33/162 (20%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA 777
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 778 RISGYCEQN---DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 49/234 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMG----EFVPQRTAAYIS--QHDN 57
++GP +GKTT L L G+ S SG VT G G F ++ +S H+
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118
Query: 58 HIGEMTVRETL--AFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
TVR+ + F A I +Y + T
Sbjct: 119 FRVRETVRDVVLSGFFA----------------------------SIGIY-QEDLTAEDL 149
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTG 174
A L++LG + AD G +S G+++RV +V P L + +DE + G
Sbjct: 150 AAAQW--LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPEL-LILDEPAQG 201
Query: 175 LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
LD Q++N L + A++ + A E F +LL +G++V QG
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIH 789
G + G +GAGKTTL+ VLAG +G I+I G +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 790 SPFVTVHESLAFSAWL--RLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847
++ E+L F L R A ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 10/190 (5%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISGYPKKH 773
+L+ + G + ++G SG+GK+TL+ + L +G I +K++
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
+ +G Q P +T E++ F LR+ E K EL+ L
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGLA 127
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+ P + LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 128 ERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185
Query: 894 GRTVVCTIHQ 903
G T+V H+
Sbjct: 186 GMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 55/241 (22%), Positives = 87/241 (36%), Gaps = 65/241 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE----------FVPQRTAAYIS 53
LGP +GKTT + L L + SG G+++ VPQ +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
++T RE L R G L + E+A +
Sbjct: 80 -------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL----------------- 108
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIST 173
L++ L AD VG SGG ++R+ ++ +F+DE +T
Sbjct: 109 ----------LELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSSTTFQIVNCLRQNIHINSE-TAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRE 231
GLD T I + +R + E ++ E L D I ++ G+I+ +G P E
Sbjct: 154 GLDPRTRRAIWDYIRA---LKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE 210
Query: 232 L 232
L
Sbjct: 211 L 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 52/242 (21%), Positives = 87/242 (35%), Gaps = 65/242 (26%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA----AYISQHD 56
+ LLG +GKTT L + G + SGR+ ++G ++ P A AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
+TV E L L+ R + D + +VY
Sbjct: 88 RIFPRLTVEENL---------------LLGAYARRDKEAQERDLE-EVY----------- 120
Query: 117 NVITDYY--LKVLGLDNCADILVGDEMIRG----ISGGQKKRVTTGE-MMVGPALAMFMD 169
+ + LK E +SGG+++ + +M P L + D
Sbjct: 121 ----ELFPRLK--------------ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL-D 161
Query: 170 EISTGLDSSTTFQIVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLSDGQIVYQ 227
E S GL +I +++ + E + LL Q A + D +L +G+IV
Sbjct: 162 EPSEGLAPKIVEEIFEAIKE---LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218
Query: 228 GP 229
G
Sbjct: 219 GT 220
|
Length = 237 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 53/233 (22%)
Query: 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 751
S+ F+ V Y M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 752 AGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEV 811
+G+I I+GY ET G + SL F PE
Sbjct: 54 NALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----PEA 96
Query: 812 DSETRKMFIEEIMELVELNPLR----------QSLVGLPGVNGLSTE------------Q 849
++F +++ VE P ++L L V GLS + Q
Sbjct: 97 -----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQ 150
Query: 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGSIKISGYPKKHET 775
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 776 F-ARISGYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R QN + P T+ + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 41/209 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGSIKISGYPK-----KH 773
L+G + PG + AL+G +GAGK+T+M VL TG Y GSI G K
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVL----TGIYTRDAGSILYLGKEVTFNGPKS 75
Query: 774 ETFARISGYCEQNDIHS-----PFVTVHESLAF-----SAWLRLAPEVDSETRKMFIEEI 823
A I IH P +T+ E++ + + R+ + +KM+ E
Sbjct: 76 SQEAGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEAD 123
Query: 824 MELVELNPLRQS--LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
L LN S LVG LS +++ + IA L +I MDEPT L
Sbjct: 124 KLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE 178
Query: 882 IVMRTVRNTVDTGRTVVCTIHQPSIDIFE 910
+ R +R GR +V H+ +IFE
Sbjct: 179 SLFRVIRELKSQGRGIVYISHRLK-EIFE 206
|
Length = 501 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 24/203 (11%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGSIKI 766
+L +L VS G AL G SGAGK+TL+ L +GR + G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 767 SGYPKKHETFA---RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI 823
S E + GY Q P V+ E +A R P R+
Sbjct: 80 S----PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP------REAARARA 129
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
EL+ + + L LP S +++R+ IA +A+ I+ +DEPT+ LDA +V
Sbjct: 130 RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 884 MRTVRNTVDTGRTVVCTIHQPSI 906
+ + G ++ H +
Sbjct: 189 VELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYITGSIKISG---YPKKHETF 776
V+ P +TA +G SG GK+T++ L R G + G + + G Y +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 777 A--RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLR 833
A R G Q P +++ +++ A L+L + + +E+ + L N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
LN ++ +TAL+G SG GK+T + D++ G K G + K + Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK-NIYSNNF 81
Query: 774 ETFA--RISGYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL-VEL 829
+ R G Q +PF+ ++++++++ P++ K ++EI+E ++
Sbjct: 82 DILELRRKIGMVFQTP--NPFLMSIYDNISY------GPKIHGTKDKKKLDEIVEQSLKK 133
Query: 830 NPLRQSLVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
+ L + N LS Q++RL IA L P++I MDEPTS LD + + +
Sbjct: 134 SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI 193
Query: 888 RNTVDTGRTVVCT 900
N ++ ++ T
Sbjct: 194 INLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 61/241 (25%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYIS---QHDNH 58
LLGP +GK+T L + G+++ GH++ P+ A + Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+++VR+ L + A G L+R E A I
Sbjct: 86 DLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------------------- 116
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV-GPALAMFMDEISTGLDS 177
L LGL AD + +R ++GG ++RV ++ PAL + +DE + GLD
Sbjct: 117 -----LARLGLAERAD-----DKVRELNGGHRRRVEIARALLHRPAL-LLLDEPTVGLDP 165
Query: 178 STTFQIVN-----CLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRE 231
++ I Q + + T ++ ++ D +++L G+++ G E
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
Query: 232 L 232
L
Sbjct: 219 L 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQ 54
+ L+GP SGK+T L A+AG L + SG + +G ++ + + R Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 41/178 (23%), Positives = 59/178 (33%), Gaps = 47/178 (26%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNH 58
+ GP +GKTT L LAG L +G V + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
E+T E L F R G G + E +
Sbjct: 87 KTELTALENLHFWQRFHGSGNA-ATIWEALAQ---------------------------- 117
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
+GL D+ VG +S GQ++RV + + PA +DE T LD
Sbjct: 118 --------VGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 49/253 (19%), Positives = 95/253 (37%), Gaps = 51/253 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEM 62
L+G GKTT L A+AG + ++ ++GR+ ++ P +R A + Q+ +
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
V + +AF R A++ A I A + D
Sbjct: 95 KVEDNVAFGLR--------------AQKMPKADI-------------------AERVAD- 120
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
LK++GL + + +SGG ++R+ + + +DE + LD++
Sbjct: 121 ALKLVGLGD-----AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESMG 241
+ + E ++ + + L D ++ DG++ G P+ L
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL--------- 226
Query: 242 FKCPQRKGVADFL 254
+ P A+FL
Sbjct: 227 YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 722 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKK-HETFA 777
+S + G + G+ G+G+T LM+ L G R G IS P+ +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVK 337
Query: 778 RISGYCEQNDIHSPF---------VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
+ Y ++ + F + + SL + + E EL+
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 829 L--NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
L + + Q++ L G N Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 398 LKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 887 VRNTVDTGRTVV 898
+R D G+ ++
Sbjct: 452 MRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSS-----LKVSGRVTYNGHNMGEFVPQRTA---AYI 52
+T LLG +GK+T L ALAG L +V+G VT NG + R A A +
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88
Query: 53 SQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
Q + AFSAR + RY ARR A + D ++ +A+A
Sbjct: 89 PQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGALTHR---DGEIAWQALALA 133
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM---------VGPA 163
G A LVG + + +SGG+ RV ++ P
Sbjct: 134 G-------------------ATALVGRD-VTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 164 LAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223
+ +DE + LD + ++++ +R+ + + V++++ D I +L+DG
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
Query: 224 IVYQGPRELVL 234
IV G VL
Sbjct: 233 IVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 16/188 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGSIKISGYPKKHETFA 777
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ + F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 778 RIS-GYCEQNDIHSPFV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R G Q+ H + TV++++A L +A + R+ + ++ L+ +
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIP--LIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
+ L G +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 134 FPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 895 RTVVCTIH 902
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 47/191 (24%), Positives = 67/191 (35%), Gaps = 60/191 (31%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGY---- 769
D L ++G+S R G L+G SG+GK+TL L G I G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 770 --PKKHE----------------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEV 811
P + T +I E +H P ++
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIE--EGLRVHEPKLS----------------- 398
Query: 812 DSETRKMFIEEIMELVELNPLRQSLVGLPGV------NGLSTEQRKRLTIAVELVANPSI 865
+E + IE + E VGL + S QR+R+ IA L+ P +
Sbjct: 399 AAERDQRVIEALEE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL 447
Query: 866 IFMDEPTSGLD 876
I +DEPTS LD
Sbjct: 448 ILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGY--PKKHETFAR 778
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 779 ISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP--LRQS 835
G Q H F TV + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
L G Q +R+ IA L P ++ +DEPT+GLD +
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 693 LIFDEV--TYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 750
+I D V TY+ P E K LN S F+ +T ++G +G+GK+T++ +
Sbjct: 7 IILDNVSYTYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQL 56
Query: 751 LAG---RKTGGYITGSIKISGYPKKHETFARIS---GYCEQNDIHSPFV-TVHESLAFSA 803
G +TG I G I KK + R+ G Q + F T+ + +AF
Sbjct: 57 TNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF-- 114
Query: 804 WLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 863
P E ++ +++ EL++L L + V LS Q++R+ +A + +
Sbjct: 115 ----GPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDG 169
Query: 864 SIIFMDEPTSGLDARA 879
+ + +DEPT GLD +
Sbjct: 170 NTLVLDEPTGGLDPKG 185
|
Length = 289 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGSIKISGYPKKHE--T 775
L V+ G TA +G +G+GK+T+M +L G G I+ K +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 776 FARISGYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETR---KMFIEEIME-LVELN 830
+ G Q F TV + +AF + ++E K+ + I E L E N
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN 142
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
P LS Q +R+ IA L P I+ +DEPT+GLD + +M +
Sbjct: 143 PFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191
Query: 891 VDTGRTVVCTIH 902
+G T+V H
Sbjct: 192 HQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFA 777
L +L+G++ + G AL+G SG+GK+T++ +L + G I++ G H
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMP-G 69
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAW-----------LRLAP-EVDSETRKMFIEEIME 825
R ++ H + + F ++ + AP V R + ME
Sbjct: 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME 129
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
L+++ L +P LS Q++R+ IA L P ++ DE TS LD V+
Sbjct: 130 LLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 886 TVRN-TVDTGRTVVCTIHQ 903
+R + T++ H+
Sbjct: 188 VIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L ++ + G ++G +G+GK+TL L G R G + S +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 779 ISGYCEQNDIHSPFV--TVHESLAFSAW-LRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
+ G QN + FV TV E LAF L L P E RK + E + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAE-IGLEKYRHR 132
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 896 TVVCTIH 902
T+V H
Sbjct: 188 TIVYITH 194
|
Length = 274 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNG---HNMGEFVPQRTAAYISQHDNH 58
+LGP SGK+T L LAG LD G VT +G ++ + +R + +Q D H
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAH 419
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ + TVRE L + T ++ L R G+
Sbjct: 420 LFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR----------------- 455
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
L + D ++G E +SGG+++R+ ++ A + +DE + LD+
Sbjct: 456 ---------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 179 TTFQIVNCLRQ 189
T +++ L
Sbjct: 506 TADELLEDLLA 516
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 49/187 (26%), Positives = 66/187 (35%), Gaps = 68/187 (36%)
Query: 4 LLGPPASGKTT---FLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRT------AAYISQ 54
LLGP +GKTT LL L S+ + GE VP R + Q
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLC----------GEPVPSRARHARQRVGVVPQ 87
Query: 55 HDNHIGEMTVRETLAFSARCQGVGT-----RYDMLMELARREKAAGIKPDPDIDVYMKAV 109
DN + TVRE L R G+ L+E A+
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------------------- 127
Query: 110 ATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMD 169
L+N AD VG+ +SGG K+R+T +V + +D
Sbjct: 128 -------------------LENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLD 163
Query: 170 EISTGLD 176
E +TGLD
Sbjct: 164 EPTTGLD 170
|
Length = 306 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/247 (23%), Positives = 93/247 (37%), Gaps = 54/247 (21%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ LG +GK+T L L G L L SG+V NG P R + +
Sbjct: 52 IVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNG-----KDPFRRREEYLRSIGLV- 102
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
M + L + L L E I PD D + + +
Sbjct: 103 -MGQKLQLWWD------------LPALDSLEVLKLIYEIPD-DEFAERL----------- 137
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
D+ ++L L+ + + R +S GQ+ R ++ P +F+DE + GLD +
Sbjct: 138 DFLTEILDLEG----FLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDI-------ILLSDGQIVYQGPRELV 233
I L++ N E LL T ++FDDI +L+ GQ+V+ G +
Sbjct: 193 ANIREFLKE---YNEERQATVLL-----TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
Query: 234 LEFFESM 240
E F
Sbjct: 245 QEQFGPY 251
|
Length = 325 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 144 GISGGQKKRVTTGEMMV-GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISL 202
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 203 LQPAPETYNLFDDII-----LLSDGQIVYQGPRELVLEFFE 238
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 733 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGSIKISGYPKKHETFA----RISGYCEQND 787
+TAL+G SG GK+T + I G ++I G K++ + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 788 IHSPFV-TVHESLAFSAWLR-LAPEVDSETRKMFIEEIMELVEL-----NPLRQSLVGLP 840
+ FV +++E+++++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K A
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK----ASNI 72
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAP------EVDSETRKMFIEEIMELVELNPLRQ 834
E+ I V +H+ L L +A E+ +M M L N LR+
Sbjct: 73 RDTERAGI----VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA-MYLRAKNLLRE 127
Query: 835 -SLVGLP---GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISGYPKKH 773
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 774 ETFARIS-GYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
T AR G Q N + S TV ++A L P+ + + + + E++ LV L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNVALPLELDNTPKDEIKRK---VTELLALVGLG 131
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
S P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 132 DKHDS---YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 718 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGSIKI 766
LVL ++ S G + LMG+SG+GK+TL+ V G K G GS+ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 767 SGYPK---KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI 823
+ + R+S +Q + P+ TV E++AF L + +E RK ++E
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 824 MELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GSIKISGYPKK 772
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 773 HETFARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-- 829
R G Q +PF ++ E++A+ LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 830 ---NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
+ L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKDRLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-05
Identities = 55/264 (20%), Positives = 89/264 (33%), Gaps = 94/264 (35%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA---AYISQHDN 57
+ +LGP +GK+T L AL+G+L SG V NG + ++ P A A + QH
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQH-- 84
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAV--ATEGQE 115
+L+F + V V M E
Sbjct: 85 --------SSLSFPFTVEEV--------------------------VAMGRAPHGLSRAE 110
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA---------- 165
+ + L + L + A +SGG+++RV LA
Sbjct: 111 DDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV---------QLARVLAQLWEPD 156
Query: 166 -----MFMDEISTGLDSS---TTFQIVN--CLRQNIHINSETAVISLL----QPAPETYN 211
+ +DE ++ LD + ++ + AVI +L A
Sbjct: 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG------LAVIVVLHDLNLAA----- 205
Query: 212 LF-DDIILLSDGQIVYQGPRELVL 234
+ D I+LL G++V G VL
Sbjct: 206 RYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIG 60
T ++GP SGK+T L +AG SGRV NG ++ P R + + Q +N
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+TV + + G+G + + R+ + K + E
Sbjct: 84 HLTVEQNV-------GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE-------- 128
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
+SGG+++RV ++V + +DE LD +
Sbjct: 129 ------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++++ L ++H ++ V+ + + L ++ L +G+I QG
Sbjct: 165 AEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 58/266 (21%)
Query: 4 LLGPPASGKTTFL---LALAGKLDSSLKVSGRVTYN--GHNMGEFVPQRTAAYISQHDNH 58
L+GP SGK+T L + L + ++V G Y+ G N G VP ++ Q N
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN-GPLVPA-DEKHLRQMRNK 88
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
IG M + F + + + V + +A E
Sbjct: 89 IG-MVFQSFNLFPHKTV--------------------LDNVTEAPVLVLGMARAEAEKRA 127
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ L ++GL AD D M +SGGQ++RV + M DE+++ LD
Sbjct: 128 ME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNL-----FDDIILLSD-GQIVYQG-PRE 231
+++N +R+ + SE + LL T+ + F D + D G+IV QG P E
Sbjct: 181 LVGEVLNVIRR---LASEHDLTMLLV----THEMGFAREFADRVCFFDKGRIVEQGKPDE 233
Query: 232 LVLEFFESMGFKCPQRKGVADFLQEV 257
+ F+ P+ + +FL +V
Sbjct: 234 I---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 23/198 (11%)
Query: 704 MPQEMKLQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 756
MPQ+++L+ L+ L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 757 GGYITGSIKISGYPKKHETF-ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSET 815
G + + G P R QN S F +H + LA ++
Sbjct: 61 AGRVL----LDGKPVAPCALRGRKIATIMQNP-RSAFNPLHTMHTHARETCLALGKPADD 115
Query: 816 RKMFIEEIMELVEL-NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
+ +E V L N R ++ L +S +R+ IA+ L+ I DEPT+
Sbjct: 116 ATLT--AALEAVGLENAAR--VLKLYPFE-MSGGMLQRMMIALALLCEAPFIIADEPTTD 170
Query: 875 LDARAAA----IVMRTVR 888
LD A A ++ V+
Sbjct: 171 LDVVAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 37/179 (20%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
+ VS R G + + G+ G G+T L + L G + +G I + G P +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRD-- 71
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELNPLRQSLVGL 839
A A + PE D + + ++ + E + L+ L L
Sbjct: 72 -------------------AIRAGIAYVPE-DRKREGLVLDLSVAENIALSSL------L 105
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
G N Q+K + +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 106 SGGN-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 16/200 (8%)
Query: 714 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG----- 768
+ DK +L + ++ + +MG SG+GK+TL+ VL R Y IK+ G
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYF 76
Query: 769 ----YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIM 824
+ + G Q P +++++++A+ L+ + K +EE +
Sbjct: 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECL 134
Query: 825 ELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 885 RTVRNTVDTGRTVVCTIHQP 904
+ + + +V H P
Sbjct: 194 KLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 65/185 (35%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIH 789
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 790 SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 850 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 901
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 902 HQPSI 906
+
Sbjct: 124 NDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 48/238 (20%)
Query: 2 TLLLGPPASGKTTFLLALAG--KLDSS-LKVSGRVTYNGHNMGEFVP--QRTAAYISQHD 56
T + G SGKTT + +AG + D + ++GR ++ G F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK-GIFLPPEKRRIGYVFQEA 84
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
++VR L RY M +R E
Sbjct: 85 RLFPHLSVRGNL-----------RYGM-----KR--------------------ARPSER 108
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
+ + +++LG+ + L G +SGG+K+RV G ++ + MDE LD
Sbjct: 109 RISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
++I+ L + +H ++ + E L D +++L DG++ GP V
Sbjct: 164 DPRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 33/228 (14%)
Query: 687 PFEPHSLIFDEV-------TYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGV 739
P EPH I D + + V P ++ + VS + R G + + G+
Sbjct: 247 PHEPHE-IGDVILEARNLTCWDVINPHRKRV-----------DDVSFSLRRGEILGVAGL 294
Query: 740 SGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI--SGYC---EQNDIHS--PF 792
GAG+T L+ L G G + G++ I+G P A+ +G E H P
Sbjct: 295 VGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353
Query: 793 VTVHESLAFSAWLRLA--PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850
+ V +++ S +D+ I ++ +++ + + LP + LS +
Sbjct: 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV---KTASPFLP-IGRLSGGNQ 409
Query: 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
++ +A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 52/184 (28%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSI----------KIS 767
+ G+ F +TAL+G SG+GK+T + L +TG I +I+
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 768 GYP-KKH--ETFARISGYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEI 823
Y +KH F R +PF +++E++ F A E K ++EI
Sbjct: 96 VYEMRKHIGMVFQR----------PNPFAKSIYENITF------ALERAGVKDKKVLDEI 139
Query: 824 MELVELNPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872
+E L+Q+ + L LS Q++RL IA + P I+ MDEP
Sbjct: 140 VE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEPA 191
Query: 873 SGLD 876
S LD
Sbjct: 192 SALD 195
|
Length = 267 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 7e-05
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
++GP SGK+T L L D + SG + +G ++ + + + AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIGEMTVRE 66
+ T+RE
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYIS---QHDNH 58
T L+GP GK+T L A L SG V + ++ A ++ QH
Sbjct: 31 TALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+TVRE +A+ G P ++ E N
Sbjct: 88 PEGITVRELVAY------------------------GRSP------WLSLWGRLSAEDNA 117
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ ++ +++ AD + D +SGGQ++R ++ + +DE +T LD +
Sbjct: 118 RVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
+++ +R+ ++ +T V+++L + D +++L++G ++ QG E V+
Sbjct: 173 HQVELMRLMRE-LNTQGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 77/319 (24%), Positives = 113/319 (35%), Gaps = 93/319 (29%)
Query: 4 LLGPPASGKTTFLLALAG--KLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIG 60
LLGP GKTT L +AG D SGR+ +G ++ R + Q
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
MTV E +AF R Q E+ R A
Sbjct: 100 HMTVFENVAFGLRMQKTPAA-----EITPRVMEA-------------------------- 128
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
L+++ L+ A +SGGQ++RV +V + +DE + LD
Sbjct: 129 ---LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 181 FQIVNCLRQ-----NI------HINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG- 228
Q+ N L+ I H E +S D I+++ DG+I G
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMS------------DRIVVMRDGRIEQDGT 228
Query: 229 PRELVLEFFESMGFKCPQRKGVADFLQE-------VTSKKDQQQYWAHKEIPYRFITVQE 281
PRE+ ++ P+ VA F+ E V + D+Q+ A+ E I V
Sbjct: 229 PREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNIYVN- 278
Query: 282 FAEAFKSFHVGQKLADELR 300
+ GQKL LR
Sbjct: 279 -----FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 903 QPSI 906
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 48/171 (28%)
Query: 731 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YPKK---HETFA 777
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 778 RISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
RI +Q + PF +++E++AF A + + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGARI-----------NGYTGDMDELVE-RSLRKAA 139
Query: 837 V-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
V G LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESG----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHET 775
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 776 FARISGYCEQNDIHSPFV---TVHESLAFSAWLR-LAPEVDSETRKMFIEEIMEL-VELN 830
+ + YC Q +P + TV+++L F +R P+ +F++++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L ++ + LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 62/184 (33%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA------YISQHDN 57
LLGP +GK+T + G +G++T +G VP R + Q DN
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPARARLARARIGVVPQFDN 124
Query: 58 HIGEMTVRETLAFSARCQGVGTR-----YDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
E TVRE L R G+ TR L+E AR
Sbjct: 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR----------------------- 161
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
L++ AD V D +SGG K+R+T ++ + +DE +
Sbjct: 162 ----------------LESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPT 200
Query: 173 TGLD 176
TGLD
Sbjct: 201 TGLD 204
|
Length = 340 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 52/242 (21%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
L+G SGK+T + + + SG++ +GH++ ++ R A +SQ D
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ-DV 415
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ T+ +A+ Q D A E+A A
Sbjct: 416 VLFNDTIANNIAYGRTEQ-----ADR----AEIERAL-------------------AAAY 447
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
D+ V L D +G+ + +SGGQ++R+ ++ A + +DE ++ LD+
Sbjct: 448 -AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 178 STTFQIVNCLRQNIHINSETAVI----SLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233
+ + L + + T VI S ++ A D I+++ DG+IV +G +
Sbjct: 503 ESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDDGRIVERGTHNEL 554
Query: 234 LE 235
L
Sbjct: 555 LA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 53/253 (20%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYI---SQHDNH 58
T ++GP GK+T L L+ + G V +G ++ + + A I +Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 59 IGEMTVRETLAFSARC--QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
G++TV+E +A R Q + TR+ R+E D + KA+ G
Sbjct: 93 PGDITVQELVA-RGRYPHQPLFTRW-------RKE---------DEEAVTKAMQATG--- 132
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
IT + D+ + +SGGQ++R ++ M +DE +T LD
Sbjct: 133 --ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
Query: 177 SSTTFQIVNCLRQNIHINSETA--VISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELV 233
S ++ L + +N E + ++L + +I L +G+IV QG P+E+V
Sbjct: 176 ISHQIDLLELLSE---LNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
Query: 234 L-EFFESM-GFKC 244
E E + G +C
Sbjct: 233 TAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 55/199 (27%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDN 57
L+GP +GK+T L L G +D + G + NG + + + A++ QH
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ T+ E + LAR + A E +EA
Sbjct: 406 FLFAGTIAENIR-----------------LARPD----------------ASDAEIREA- 431
Query: 118 VITDYYLKVLGLDNCA-------DILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDE 170
L+ GLD D +G+ G+SGGQ +R+ + A + +DE
Sbjct: 432 ------LERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDE 484
Query: 171 ISTGLDSSTTFQIVNCLRQ 189
+ LD+ T +++ LR
Sbjct: 485 PTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 49/184 (26%), Positives = 69/184 (37%), Gaps = 62/184 (33%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA------YISQHDN 57
LLGP +GK+T L G + G++T +GE VP R + Q DN
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSRARLARVAIGVVPQFDN 87
Query: 58 HIGEMTVRETLAFSARCQGVGTR-----YDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
E TVRE L R G+ TR L+E AR
Sbjct: 88 LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR----------------------- 124
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
L++ AD+ V +SGG K+R+T ++ + +DE +
Sbjct: 125 ----------------LESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPT 163
Query: 173 TGLD 176
TGLD
Sbjct: 164 TGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 57/237 (24%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
L+GP SGK+T + + D SGR+ +GH++ ++ R +SQ D
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DV 85
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ TV E +A+ G E+AA A A E
Sbjct: 86 FLFNDTVAENIAYGRP--GA--------TREEVEEAARA-----------ANAHE----- 119
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGI--SGGQKKRVTTGEMMVGPALAMFMDEISTGL 175
I + L D ++G+ RG+ SGGQ++R+ ++ + +DE ++ L
Sbjct: 120 FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 176 DSSTTFQIVNCLRQNIHINSETAVI----SLLQPAPETYNLFDDIILLSDGQIVYQG 228
D+ + + L + + N T VI S ++ A D I++L DG+IV +G
Sbjct: 170 DTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 46/192 (23%)
Query: 1 MTLLLGPPASGKTTFLLAL--AGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAY 51
+T L+GP SGK+T L ++ L+ + ++G + YNGHN+ + P ++
Sbjct: 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPRTDTVDLRKEIGM 90
Query: 52 ISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVAT 111
+ Q N M++ E + + R +G+ ++K V +AV
Sbjct: 91 VFQQPNPF-PMSIYENVVYGLRLKGI------------KDKQ----------VLDEAVEK 127
Query: 112 EGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEI 171
+ A++ D D L + G+SGGQ++RV ++ + +DE
Sbjct: 128 SLKGASI----------WDEVKDRLHDSAL--GLSGGQQQRVCIARVLATSPKIILLDEP 175
Query: 172 STGLDSSTTFQI 183
++ LD + +I
Sbjct: 176 TSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 61/277 (22%), Positives = 102/277 (36%), Gaps = 88/277 (31%)
Query: 2 TLLLGPPASGKTTFL--LALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-------RTAAYI 52
T L+GP GK+T L L L +V G V +G N+ + P+ R +
Sbjct: 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI--YDPKVDVVELRRRVGMV 93
Query: 53 SQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARR-EKAAGIKPDPDIDVYMKAVAT 111
Q N M++ + +A+ R G+ + L E+ K A +
Sbjct: 94 FQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKAAL--------------- 135
Query: 112 EGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM----- 166
D D L + G+SGGQ++R+ + ALA+
Sbjct: 136 -----------------WDEVKDRL--HKSALGLSGGQQQRLC-----IARALAVKPEVL 171
Query: 167 FMDEISTGLDSSTTFQI---VNCLRQNIHINSETAVISLLQPAPETYNL------FDDII 217
MDE ++ LD +T +I + L++ T VI T+N+ D
Sbjct: 172 LMDEPTSALDPISTLKIEELITELKKKY-----TIVIV-------THNMQQAARVSDYTA 219
Query: 218 LLSDGQIVYQGPRELVLEFFESMGFKCPQRKGVADFL 254
G++V GP + + F + P+ K D++
Sbjct: 220 FFYLGELVEFGPTD---KIFTN-----PKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 58/242 (23%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM-----GEFVP--QRTAAYISQ 54
T L GP SGKT+ + +AG GR+ NG + G F+P +R Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 HDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ 114
TVR L +
Sbjct: 84 DARLFPHYTVRGNLRYGM------------------------------------------ 101
Query: 115 EANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMDEIST 173
+ + +++ L +L D +SGG+K+RV G ++ P L + MDE
Sbjct: 102 -WKSMRAQFDQLVALLGIEHLL--DRYPGTLSGGEKQRVAIGRALLTAPEL-LLMDEPLA 157
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233
LD +I+ L + + ++ + E L D +++L +G++ GP E V
Sbjct: 158 SLDLPRKREILPYL-ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216
Query: 234 LE 235
Sbjct: 217 WG 218
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 74/250 (29%)
Query: 5 LGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP------QRTAAYISQHDNH 58
+G +GK+T L+ L+ SG V +G ++ +R I QH N
Sbjct: 37 IGRSGAGKST-LIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNL 93
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ TV E +A +E+A KA E V
Sbjct: 94 LSSRTVFENVALP-------------LEIAGVPKAE-------------------IEERV 121
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEIST 173
L+++GL++ AD +SGGQK+RV + ALA DE ++
Sbjct: 122 --LELLELVGLEDKADA-----YPAQLSGGQKQRVG-----IARALANNPKVLLCDEATS 169
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETY------NLFDDIILLSDGQIVYQ 227
LD TT I+ LR IN E + +L T+ + D + ++ G++V +
Sbjct: 170 ALDPETTQSILALLRD---INRELGLTIVLI----THEMEVVKRICDRVAVMEKGEVVEE 222
Query: 228 GPRELVLEFF 237
G V E F
Sbjct: 223 GT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 47/175 (26%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEM 62
L+ G +GKTT L LAG L SG++ +G R AY+ H+
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG----HLP-- 91
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAV-ATEGQEANVITD 121
G+K D + + G+ A +
Sbjct: 92 --------------------------------GLKADLSTLENLHFLCGLHGRRAKQMPG 119
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
L ++GL D LV R +S GQKKR+ + + PA +DE LD
Sbjct: 120 SALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 731 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDI-- 788
G + L+G SG GKTT++ ++AG + G I I G H + +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSI-------QQRDICM 82
Query: 789 --HS----PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842
S P +++ E++ + L++ V E RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 45/214 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGSIKISGYPKKHETFA 777
L+ VS G A++G +G+GKTT ++ L TG T K +T
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG---TIEWIFKDEKNKKKT-K 78
Query: 778 RISGYCEQNDIHSPFV---------------------------TVHESLAFSAWLRLAPE 810
E+ I T+ + + F ++
Sbjct: 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VSMG 135
Query: 811 VDSETRKMFIEEIMELVEL--NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFLVF 189
Query: 869 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
DEPT+GLD + ++ N G+T++ H
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGSIKISGYPKKHE- 774
VS F +TA++G SG GK+T++ + + R TG + I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 775 -TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPL 832
+ R G Q P +++++++ A +L V+ +E ++ V L + +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
+ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 139 KDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 40/189 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGSIKISGYPKKH---- 773
L GVS +TAL+G SG GK+T + L R I GS+++ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 774 --ETFARISGYCEQNDIHSPF-VTVHESLAFSA----------WLRLAPEVDSETRKMFI 820
E R+ G Q+ +PF ++ E++++ RL D +
Sbjct: 121 LVELRKRV-GMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED--- 174
Query: 821 EEIMELVELNPLRQSLVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPT 872
ELVE LRQ+ + VN GLS Q++RL IA L +P +I MDEP
Sbjct: 175 ----ELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 873 SGLDARAAA 881
S LD A +
Sbjct: 229 SALDPIATS 237
|
Length = 305 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET---FA 777
LNGVS + G +++G +G+GK+T ++ G G +KI G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 778 RISGYCEQN-DIHSPFVTVHESLAFSAWLRLAPEVDSETR---KMFIEEIMELVELNPLR 833
R G QN D TV + +AF + P + R + +++ P R
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
LS Q++R+ +A + P II +DE TS LD +MR + +
Sbjct: 141 -----------LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189
Query: 894 GRTVVCTI 901
+ V +I
Sbjct: 190 YQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET 775
D L VS G T+++G +G+GK+T+ ++ G + +G I + +
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDN 77
Query: 776 FARIS---GYCEQNDIHSPFV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
F ++ G QN + FV V +AF P + + E ++ V++
Sbjct: 78 FEKLRKHIGIVFQNP-DNQFVGSIVKYDVAFGLENHAVP---YDEMHRRVSEALKQVDML 133
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 134 ERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 733 LTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGSIKISGYPKKHETFARISGYCE 784
+TAL+G SG GK+T + D++ G R G + I + G
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVF 90
Query: 785 QNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-----NPLRQSLVG 838
Q +PF ++ +++A+ LR+ E D + + +EE ++ L + L +S +G
Sbjct: 91 QKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG 146
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L G Q++RL IA + +P +I MDEP S LD
Sbjct: 147 LSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 810 EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869
EV ++K+ I + + L ++LVG + LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 870 EPTSGLDARAAAIVMRTVRN 889
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 46/244 (18%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGE 61
T ++G SGK+T L G + SG + NG ++ + R + Q N++ +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DRHT--LRQFINYLPQ 555
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
E FS G+ + L+ G K + D A A + D
Sbjct: 556 ----EPYIFS------GSILENLL--------LGAKENVSQDEIWAACEI----AEIKDD 593
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
LG ++ E ISGGQK+R+ ++ + + +DE ++ LD+ T
Sbjct: 594 IENMPLGYQT--EL---SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
Query: 182 QIVNCLRQNIHINSETA--VISLLQPAPETYNLFDDIILLSDGQIVYQGP-RELVLE--F 236
+IVN L +++ +T V L A ++ D II+L G+I+ QG EL+ F
Sbjct: 649 KIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKIIEQGSHDELLDRNGF 701
Query: 237 FESM 240
+ S+
Sbjct: 702 YASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL----LDGVP-------- 544
Query: 779 ISGYCEQNDIHSPFVTV-HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
+ Y + + +H V E + FS +R + EEIM + ++
Sbjct: 545 LVQY-DHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 838 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
P NG TE Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 602 EFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 887 VRNTVDT-GRTVVCTIHQPSI 906
++ + RTV+ H+ S
Sbjct: 656 LQESRSRASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISG---YP 770
L +S +TA +G SG GK+TL+ D++ + I G I++ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 771 KKHE--TFARISGYCEQNDIHSPF-VTVHESLAFSAWLRLA---------PEVDSETRKM 818
KK + R G Q +PF +++E++ + LRL V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 819 FI-EEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
+ +E+ + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 878 RAAAIV 883
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 53/229 (23%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
LLGP +GKTT + + G + SG V ++G + + Y+ + +M
Sbjct: 31 LLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAARNRIGYLPEERGLYPKMK 86
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V + L + A+ +G+ ARR D +
Sbjct: 87 VIDQLVYLAQLKGLKKEE------ARRR----------------------------IDEW 112
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVT-TGEMMVGPALAMFMDEISTGLDSSTT-- 180
L+ L L A+ V +E+ S G +++V ++ P L + +DE +GLD
Sbjct: 113 LERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPEL-LILDEPFSGLDPVNVEL 166
Query: 181 -FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ L + VI L D ++LL+ G+ V G
Sbjct: 167 LKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 60/241 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIG 60
L+G GK+T + L D + SG + +G ++ + + +SQ + +
Sbjct: 34 LVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLF 89
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+ T+ E + + KPD + +A +AN I
Sbjct: 90 DGTIAENIRYG-------------------------KPDATDEEVEEAAK----KAN-IH 119
Query: 121 DYYLKVLGLDNCADILVGDEMIRG--ISGGQKKRVTTGEMMV-GPALAMFMDEISTGLDS 177
D+ ++ L + D LVG+ RG +SGGQK+R+ ++ P + + +DE ++ LD+
Sbjct: 120 DF---IMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDA 172
Query: 178 STTFQIVNCLRQNIHINSETAVI----SLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 232
+ + L T VI S ++ A D I +L +GQ+V QG EL
Sbjct: 173 ESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQGTHDEL 224
Query: 233 V 233
+
Sbjct: 225 M 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 110 ATEGQ--EANVITDYYLKVLGLDNCADILVGDEMIRG--ISGGQKKRVTTGEMMVGPALA 165
AT+ + EA + K++ + D +VG+ RG +SGG+K+RV ++
Sbjct: 102 ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPI 158
Query: 166 MFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLF-----DDIILLS 220
+ +DE ++ LD+ T +I LR T ++ + L D II+L
Sbjct: 159 LLLDEATSALDTHTEREIQAALRDVS--KGRTTIVI-------AHRLSTIVNADKIIVLK 209
Query: 221 DGQIVYQG-PRELVLE 235
DG+IV +G EL+ +
Sbjct: 210 DGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 734 TALMGVSGAGKTTLMDVLAG--RKTGGYIT--GSI------KISGYPKKHETFARISGYC 783
TA+ G SGAGKT+L++ ++G R G I G + I P+K RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 784 EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843
Q+ P V +L + + F ++I+ L+ + PL L PG
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG-- 127
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 33/169 (19%)
Query: 725 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSIKISGYPKKHETFARISG 781
G G V+ + G +G GKTT +LAG G + +KIS P+ I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ------YIKP 411
Query: 782 YCEQNDIHSPFVTVHESLAFSAWLR-LAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
TV LR + ++ S + EI++ ++L L V
Sbjct: 412 --------DYDGTV------EDLLRSITDDLGSS---YYKSEIIKPLQLERLLDKNV--- 451
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 --KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY-----P 770
D +L GVS +TA++G SG GK+T + L + +++ G
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 771 KKHETFARISGYCEQNDIHSPF-----VTVHESLAFSAWL---RLAPEVDSETRKMFIEE 822
+E ++ Q + P ++V++++A+ + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 823 IMELVEL-----NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
++ +L + + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 878 RAAAIVMRTVRN 889
A+ V +++
Sbjct: 184 IASMKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGYPKKHETFARI 779
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 780 SGYCE----------QNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829
E QN P ++V E++A+ +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 830 NPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 882
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 883 VMR 885
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
++ V+ F G A++G +G+GK+TL+ + + T TG++ + H+T +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT----TGTVTVDDITITHKTKDK 78
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME-----LVELNPLR 833
+ I F ES F + + KM ++E+ L++L R
Sbjct: 79 YIRPVRKR-IGMVF-QFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR 136
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 892
+ P +S Q +++ I L NP II +DEPT+GLD ++ VMR +++ D
Sbjct: 137 DVMSQSP--FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 893 TGRTVVCTIH 902
+T++ H
Sbjct: 195 ENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
++E+++ +EL + ++ LS + +R+ IA L + F DEP+S LD +
Sbjct: 119 KLDELVDQLELRHVLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
R +R + V+ H ++
Sbjct: 174 QRLNAARLIRELAEDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 903
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 904 PSIDIFESFDEAI 916
P + I + D+AI
Sbjct: 229 PEV-IEDLSDKAI 240
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 68/260 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEM 62
LLGP GKTT L +AG + SG + +G ++ P +R + Q+ +
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHL 87
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV E +AF R + + E+ R A + V EG
Sbjct: 88 TVFENIAFGLRLKKLPKA-----EIKERVAEA-----------LDLVQLEGYA------- 124
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+ +SGGQ++RV +V + +DE LD
Sbjct: 125 ----------------NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 183 IVNCLRQ-------NIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVL 234
LR+ + + + E + D I +++ G+I G P E+
Sbjct: 165 ----LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220
Query: 235 EFFESMGFKCPQRKGVADFL 254
E P + VADF+
Sbjct: 221 E---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIG 60
+LG SGK+T L LAG D G +T NG + Q T + ++Q H+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
T+R+ L + PD D + A + ++
Sbjct: 425 SGTLRDNLRLA-------------------------NPDAS-DEELWAALQQVGLEKLLE 458
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
GL+ E R +SGG+++R+ ++ A +DE + GLD T
Sbjct: 459 S---APDGLNTWLG-----EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNL-----FDDIILLSDGQIVYQGPRELVLE 235
Q++ L + H +T ++ T+ L D II+L +G+I+ +G +L
Sbjct: 511 RQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 44/191 (23%)
Query: 1 MTLLLGPPASGKTTFLLAL--AGKLDSSLKVSGRVTYNGHNMGE-----FVPQRTAAYIS 53
+T L+GP GK+TFL L L S++K+ G V +G N+ + ++ +
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
Q N M++ + +A+ R G+ +
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHGIKDK--------------------------------- 117
Query: 114 QEANVITDYYLKVLGL-DNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
+E + I ++ LK L D D L + +SGGQ++R+ + + MDE +
Sbjct: 118 KELDKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 173 TGLDSSTTFQI 183
+ LD +T +I
Sbjct: 176 SALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 892 DTGRTVVCTIHQPSIDIFES 911
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKFHD 155
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE 774
E + +L +S + G AL+G SG+GK+TL+ +L G G I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---- 65
Query: 775 TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
+S + S ++V L P + T LR
Sbjct: 66 ----VSDLEKA---LSSLISV---------LNQRPYLFDTT----------------LRN 93
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 894
+L G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 94 NL-GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKD 147
Query: 895 RTVVCTIH 902
+T++ H
Sbjct: 148 KTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 47/225 (20%)
Query: 702 VDMPQEMKLQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 754
V++P+E LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 755 KT---GGYITGSIKISGYPKKHETFARISGYCEQN-----------DIHSPFVTVHESLA 800
G Y P E R G QN +H P
Sbjct: 124 LKPNLGRY-------EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176
Query: 801 FSAWLR-LAPEVDSETRKMFIEEIMELVELNPL--RQSLVGLPGVNGLSTEQRKRLTIAV 857
+ L +VD + +E++E + L + R V+ LS + +R+ IA
Sbjct: 177 VKGKVGELLKKVDERGKF---DEVVERLGLENVLDRD-------VSELSGGELQRVAIAA 226
Query: 858 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 52/260 (20%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-VPQRTAAYISQHDNHI 59
M LLGP SGKTT L +AG L+ + SG + ++G ++ R ++ QH
Sbjct: 30 MVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF 86
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
MTV + +AF L L RRE+ P+ V
Sbjct: 87 RHMTVFDNIAFG------------LTVLPRRER-------PNAAAIKAKVTQ-------- 119
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM-VGPALAMFMDEISTGLDSS 178
L+++ L + A D +SGGQK+RV + V P + + +DE LD+
Sbjct: 120 ---LLEMVQLAHLA-----DRYPAQLSGGQKQRVALARALAVEPQI-LLLDEPFGALDAQ 170
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFF 237
++ LRQ +H + + + E + D ++++S G I G P ++ E
Sbjct: 171 VRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE-- 227
Query: 238 ESMGFKCPQRKGVADFLQEV 257
P + V +F+ EV
Sbjct: 228 -------PATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 146 SGGQKKRVTTGEMMV-GPALAMFMDEISTGLDSSTTFQIVNCLR--QNIH------INSE 196
SGGQ++R+ ++ P L + +DE ++ LD S Q+++ LR Q H I+ +
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 197 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGSIKISGYPKKHETF 776
+ G+S G AL+G SG+GK+ +++ +L + +GSI G E
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG-----EDL 79
Query: 777 ARIS------------GYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEE 822
S G Q + S P T+ + LA LRL + + E
Sbjct: 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARALE 137
Query: 823 IMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
++ELV + + L P + LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 LLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 57/305 (18%), Positives = 111/305 (36%), Gaps = 62/305 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHD 56
++G SGK+T + L ++ + +G++ +G N+ + V ++ + Q
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
MT+ + + G E R+EKA E
Sbjct: 81 ALFPHMTILQNTSLGPELLGWP-------EQERKEKA--------------------LEL 113
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
LK++GL+ DE+ SGG ++RV + + MDE + LD
Sbjct: 114 -------LKLVGLEEYEH-RYPDEL----SGGMQQRVGLARALAAEPDILLMDEAFSALD 161
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236
+ + L++ + + ++ + E + D I+++ G+IV G + +L
Sbjct: 162 PLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL-- 218
Query: 237 FESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLA 296
R ++++E K D Q + + I R T A K +L
Sbjct: 219 ----------RNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLM 268
Query: 297 DELRI 301
+ R+
Sbjct: 269 RDERV 273
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 733 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGSIKISGYPKKHETFARISGYC 783
+TA +G SG GK+T + D++ G G Y G+ S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 784 EQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIME-----LVELNPLRQSLV 837
++ +PF +++ +++A+ P + + +E+I+E + ++ L
Sbjct: 170 QKP---TPFEMSIFDNVAY------GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD 220
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
N LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 --KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 39/196 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGSIKISGYPKKHETF 776
L VS G L+G +GAGK+TL+ +LAG I +G++ + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 777 ARISGYCEQNDIHSPFVTVHESLAFSA-WLRLAPEVDSETRKMFIEEIMELVELN----- 830
R+S +P +T E++ + L L+ + E I+EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFIDL 138
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
P++ S+ + RL A+ P I+ +DE + DA R +R
Sbjct: 139 PVKT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL 188
Query: 891 VDTGRTVVCTIHQPSI 906
+ G+TV+ H PS
Sbjct: 189 LKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQ 204
+SGGQK+RV ++ + +DE + GLD +I+N + +H +I +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSH 203
Query: 205 PAPETYNLFDDIILLSDGQIVYQG-PRELV--LEFFESMGFKCPQ 246
+ L D II+++ G+ QG PRE+ +E ES+G PQ
Sbjct: 204 SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 62/176 (35%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
+LGP GK+T L +AG + SG V +G + P Y+ Q D + +T
Sbjct: 34 ILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLT 88
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V + +A +G RE+A
Sbjct: 89 VLDNVALGLELRGKSKA-------EARERA---------------------------KEL 114
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA---------MFMDE 170
L+++GL D +SGG ++RV A+A + +DE
Sbjct: 115 LELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 13 TTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA----AYISQHDNHIGEMTVRETL 68
+T L + G L SG + +G + ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 AFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLG 128
F R D A A E L+ +G
Sbjct: 58 FFGLR-----------------------------DKEADARAEE----------ALERVG 78
Query: 129 LDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDE 170
L + D + SGGQK+RV ++ + +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 66/242 (27%)
Query: 4 LLGPPASGKTTFL---LALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH----D 56
LLGP +GKTT L L L ++KV+G G +VPQR H D
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
I +V T+ S R +G RR A
Sbjct: 64 FPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------------ 93
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEI 171
L+ +GL AD VG+ +SGGQ++RV +V ALA + +DE
Sbjct: 94 ---VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSVLLLDEP 140
Query: 172 STGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PR 230
TGLD T + + + TA++ + D ++LL +G+++ G P+
Sbjct: 141 FTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQ 197
Query: 231 EL 232
+L
Sbjct: 198 QL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 50/203 (24%)
Query: 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 751
++ ++V+YS +L D +S + T ++G+SG+GK+TL +L
Sbjct: 473 DIVINDVSYSYGYGSN-----ILSD-------ISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 752 AGRKTGGYITGSIKISGYP----KKHETFARISGYCEQNDIHSPFV---TVHESLAFSAW 804
G +G I ++G+ +H I+ Y Q P++ ++ E+L A
Sbjct: 521 VGFFQAR--SGEILLNGFSLKDIDRHTLRQFIN-YLPQE----PYIFSGSILENLLLGA- 572
Query: 805 LRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE-----------QRKRL 853
+ +EI E+ ++ + +P G TE Q++R+
Sbjct: 573 ----------KENVSQDEIWAACEIAEIKDDIENMP--LGYQTELSEEGSSISGGQKQRI 620
Query: 854 TIAVELVANPSIIFMDEPTSGLD 876
+A L+ + ++ +DE TS LD
Sbjct: 621 ALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGSIKISGYPKKHET 775
++ VS + G + ++G SGAGKTTL ++AG T G + G + +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 776 FARISGYC----EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP 831
R Y ++ D++ P TV ++L + L L E+ K I M +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
+ L P + LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 892 DTGR 895
R
Sbjct: 471 LKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 38/175 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGSIKISGYPKKHETF 776
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 777 ARIS-GYCEQNDIHS--PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
R QN S P V + L L + + + R+ +M V
Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKVGQILE--EPLLINTSLSAAERREKALAMMAKV------ 141
Query: 834 QSLVGLPGVNGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 876
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ----------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSIKISGYPKKHETFAR 778
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 779 ISGYC---EQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL------ 829
+ QN +H T+ ++A++ T + E+I E +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----------TEQYSREQIEEAARMAYAMDF 462
Query: 830 -NPLRQSLVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
N + L + G NG LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 463 INKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 53/227 (23%), Positives = 87/227 (38%), Gaps = 53/227 (23%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
+LGP GKTT L +AG + S G + NG + P + Q++ + +
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLN 90
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V + +AF + +G+ RRE A
Sbjct: 91 VIDNVAFGLQLRGIEKA-------QRREIA---------------------------HQM 116
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE-MMVGPALAMFMDEISTGLDSSTTFQ 182
L ++GL+ + I +SGG ++RV + V P L + +DE LD+ T Q
Sbjct: 117 LALVGLEG-----AEHKYIWQLSGGMRQRVGIARALAVEPQL-LLLDEPFGALDALTREQ 170
Query: 183 IVNCLRQNIHINSETAVISLL--QPAPETYNLFDDIILLS--DGQIV 225
+ L + + ET LL E L +++LS G++V
Sbjct: 171 MQELL---LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 27/176 (15%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
L+G +GK+T L LAG+L+ SG VT G V Y+SQ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRPK---GLRV-----GYLSQEPPLDPEKT 82
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ---EANVIT 120
V + + +G G ++L EL D + + EA
Sbjct: 83 VLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
L LG + D + +SGG ++RV ++ + +DE + LD
Sbjct: 138 A--LLGLGFPD------EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 1 MTLLLGPPASGKTTFLLAL--------AGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYI 52
+T L+GP SGKTTFL L + + + GR +N ++ EF +R +
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF--RRRVGML 106
Query: 53 SQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATE 112
Q N M++ + + R +L R++ G+ +A TE
Sbjct: 107 FQRPNPF-PMSIMDNVLAGVRAH----------KLVPRKEFRGVA---------QARLTE 146
Query: 113 GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIS 172
+GL + + D R +SGGQ++ + + + +DE +
Sbjct: 147 --------------VGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPT 191
Query: 173 TGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231
+ LD +TT +I +R + VI + + + D L DG++V +GP E
Sbjct: 192 SALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTE 247
|
Length = 276 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 704 MPQEMKLQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGG 758
M ++K++GV K +L ++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 759 YITGSIKISG---YPKKHETF---ARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEV 811
+ G++ + Y + R+ +Q + PF ++ +++AF P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAF------GPRM 111
Query: 812 DSETRKMFIEEIMELVELNPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELV 860
T + ++E++E LRQ+ + GL LS Q++RL IA L
Sbjct: 112 LGTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLA 163
Query: 861 ANPSIIFMDEPTSGLD 876
P +I MDEP S LD
Sbjct: 164 IEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG---------YPK 771
+ G+S +TA++G SG GK+T + L + G +K+ G Y
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 772 KHET--FARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
+ R G Q +PF ++++E++A+ +R++ ++ +E ++
Sbjct: 80 RININRLRRQIGMVFQRP--NPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAA 135
Query: 829 L-----NPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
L + L +S +GL G Q++RL IA L P ++ MDEP S LD A V
Sbjct: 136 LWQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-04
Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 24/204 (11%)
Query: 710 LQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGSIKISG 768
L + + VS R G + + GV+G G++ L++ ++G RK +G I ++G
Sbjct: 263 LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNG 319
Query: 769 YPKKHETFARIS-----GYCEQNDIH---SPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
R Y ++ +++ E+L P R F+
Sbjct: 320 KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFS----RGGFL 374
Query: 821 --EEIM----ELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874
I EL+E +R P LS +++L +A EL P ++ +PT G
Sbjct: 375 DRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433
Query: 875 LDARAAAIVMRTVRNTVDTGRTVV 898
LD A + + D G+ V+
Sbjct: 434 LDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 9e-04
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 714 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773
LE K VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------------------- 708
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAF---SAWLRLAPEVDS-----ETRKMFIEEIME 825
Q +I V S+A+ AW+ A + E + + +
Sbjct: 709 -----------QFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVR 757
Query: 826 LVELNPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ +L L +G GVN LS Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGGGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816
Query: 879 AAAIVMRTVRNTVDTGRTVVCTIHQ 903
V+ G+T V HQ
Sbjct: 817 VGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 24/114 (21%)
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEISTGLDSS 178
L++LGL + AD +SGG+++RV ++ ALA + +DE ++ LD +
Sbjct: 82 LELLGLAHLAD-----RPFNELSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNL----FDDIILLSDGQIVYQG 228
+++ LR+ +T V+ L NL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHN---MGEFVPQ--RTAAYISQH 55
+ LLGP SGK+T L +AG L+ SG + +G + + + +P R + Q
Sbjct: 28 IVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQD 84
Query: 56 DNHIGEMTVRETLAF 70
+TV E +A
Sbjct: 85 FALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 115 EANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTG 174
E NV +YYL ++GL+ + D ++ +SGG+ +RV+ + + +DE ++
Sbjct: 106 EKNVDVEYYLSIVGLNK--EYATRD--VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161
Query: 175 LDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234
LD ++T +I+ L + VI + + + D L+ G +V
Sbjct: 162 LDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK---TY 217
Query: 235 EFFES 239
+FF +
Sbjct: 218 DFFTN 222
|
Length = 241 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 47/233 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSL-KVSGRVTYNGHNMGE-FVPQRTAAYISQHDNHIGE 61
L+G SGK+ LA+ G L L + SG + +G + + R A I Q N
Sbjct: 17 LVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ--NPRTA 74
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
T+ A + L L + K A +A+ E EA
Sbjct: 75 FNPLFTMGNHAI--------ETLRSLGKLSKQA------------RALILEALEA----- 109
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEISTGLD 176
+GL + ++L + +SGG +R +M+ AL + DE +T LD
Sbjct: 110 -----VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEPPFLIADEPTTDLD 157
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229
+++ LR+ + T ++ + + D++ ++ DG+IV +G
Sbjct: 158 VVNQARVLKLLRE-LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 26/171 (15%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFA 777
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 778 RISGYCEQNDIHSPFV-TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN------ 830
+ G Q + F T+ + +AF + E + ++ M +V L+
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG--PINLGLSEEEI-ENRVKRAMNIVGLDYEDYKD 139
Query: 831 --PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
P LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 140 KSPFE-----------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 844 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 899
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 900 TIHQPSIDIFESFDEAIPGIEKIKNG 925
H P ++ E D+ I I+K+ G
Sbjct: 137 ITHLP--ELAELADKLI-HIKKVITG 159
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQ 54
+ +LGP +GK+T L LAG L S SG + +G ++ P+ R AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 137 VGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEISTGLDSSTTFQIVNCLRQNI 191
V + + G+SGGQ++RV + ALAM +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVA-----LARALAMDPDVLLLDEPTSALDPITRREVRALLKS-L 146
Query: 192 HINSETAVISLLQPAPETYNLFDDIILLSDGQ 223
V+ + E L D +++L DG+
Sbjct: 147 QAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 59/209 (28%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
+ VS R G + + G+ GAG+T L L G + +G I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDG------------ 320
Query: 781 GYCEQNDIHSP---------FVT-------------VHESLAFSAWLRLAPEVDSETRKM 818
+ I SP +V + E++ ++ R + R+
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFS-------RRG 370
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQR---------KRLTIAVELVANPSIIFMD 869
I+ E + L + S EQ +++ +A L +P ++ +D
Sbjct: 371 LIDRRKERALAERYIRRL----RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILD 426
Query: 870 EPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
EPT G+D A A + R +R G+ ++
Sbjct: 427 EPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 50/191 (26%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDNH 58
+ GP SGKTT L LAG S ++GRV NG + R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
++V E L F D + +A+A
Sbjct: 85 KTTLSVLENLRFWH-------------------------ADHSDEQVEEALAR------- 112
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+GL+ D V +S GQ++RV +++ +DE +T LD +
Sbjct: 113 --------VGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
Query: 179 TTFQIVNCLRQ 189
+ +
Sbjct: 160 GVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGS-IKISGYPKKHETFARI 779
LN +S + G TAL+G +G+GK+T+ ++ G S I + G +T I
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 780 S---GYCEQNDIHSPFV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
G QN + FV TV + +AF E R + E++++V + L
Sbjct: 83 REKVGIVFQNP-DNQFVGATVGDDVAFGL----------ENRAVPRPEMIKIVR-DVLAD 130
Query: 835 SLVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 887
VG+ P LS Q++R+ IA L P II +DE TS LD +++ +
Sbjct: 131 --VGMLDYIDSEPA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI 186
Query: 888 RN-TVDTGRTVVCTIHQPSIDIFES 911
R TV+ H DI E+
Sbjct: 187 RKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 43/256 (16%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDS--SLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNH 58
+T L+GP GK+TFL L D ++K++G + + G N+ Y S+ D
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI----------YGSKMD-- 79
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ E+ + F + YD +A K AG+K D ++ + V ++A +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYD---NVAYGLKIAGVK---DKELIDQRVEESLKQAAI 133
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
+ DN D + SGGQ++R+ + + +DE ++ LD
Sbjct: 134 WKETK------DNL------DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFE 238
++ +I L + H + V LQ A + D L +G ++ GP E +
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIEAGPTEEM----- 233
Query: 239 SMGFKCPQRKGVADFL 254
F P+++ +D+L
Sbjct: 234 ---FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 48/226 (21%), Positives = 82/226 (36%), Gaps = 50/226 (22%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHI 59
+ GP GK+T L +A L S SG + + G ++ P+ + +Y +Q
Sbjct: 33 AITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
G+ TV + L F + R +PD A+
Sbjct: 90 GD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-----ALD--------- 115
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT-TGEMMVGPALAMFMDEISTGLDSS 178
L L IL + I +SGG+K+R+ + P + + +DEI++ LD S
Sbjct: 116 ---LLARFALP--DSIL--TKNITELSGGEKQRIALIRNLQFMPKI-LLLDEITSALDES 167
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224
I + + + AV+ + + D +I L G
Sbjct: 168 NKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 51/252 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
++GP SGK+T +AG + + G + + G ++ + P+ A H+G
Sbjct: 38 IMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEERA--------HLGIF- 87
Query: 64 VRETLAFSARCQ--GVGTRYDMLMELA--RREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
LAF + GV + D L LA + K G P++D E E +I
Sbjct: 88 ----LAFQYPIEIPGV-SNADFLR-LAYNSKRKFQG---LPELD------PLEFLE--II 130
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM-MVGPALAMFMDEISTGLDSS 178
+ LK++G+D + + G SGG+KKR +M ++ LA+ +DE +GLD
Sbjct: 131 NEK-LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAI-LDETDSGLDID 185
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETY-NLFDDII-----LLSDGQIVYQGPREL 232
I + N + SE ++I + Y L D I ++ +G+I+ G EL
Sbjct: 186 ALKIIAEGI--NKLMTSENSIILITH-----YQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238
Query: 233 VLEFFESMGFKC 244
E E G+
Sbjct: 239 AKE-LEKKGYDW 249
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 49/191 (25%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYITGSIKISGYPKKHETFARISGY 782
+S R G + L GV GAG+T L + L G R G G I ++G I+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNG--------KEINAL 330
Query: 783 CEQNDIHSPFVTVHE------------------SLAF---SAWLRLAPE---VDSETRKM 818
+ V + E +L W++ A E ++ R +
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL 390
Query: 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
I+ N Q+ L G N Q+K L IA L A+P ++ +DEPT G+D
Sbjct: 391 NIK-------FNHAEQAARTLSGGN-----QQKVL-IAKCLEASPQLLIVDEPTRGVDVS 437
Query: 879 AAAIVMRTVRN 889
A + + +R+
Sbjct: 438 ARNDIYQLIRS 448
|
Length = 510 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 823 IMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 882
I E +E P + P LS Q++R+ IA L+ P I+ +DE TS LD+ + +
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 883 VMRTVRNTVDTG-RTVVCTIHQ 903
+ +T+ + D +T++ H+
Sbjct: 1397 IEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 1 MTLLLGPPASGKTTFLLAL--AGKLDSSLKVSGRVTYNGHNMGEFVP-----QRTAAYIS 53
+T ++GP GK+TFL L +L+S ++V GRV + N+ E +R + +
Sbjct: 35 VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVH 94
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
N + M+V + +A+ GV K G +P +ID +++ +
Sbjct: 95 PKPN-LFPMSVYDNVAY-----GV--------------KIVGWRPKLEIDDIVESALKDA 134
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEIST 173
+ I K LD +SGGQ++R+ + + MDE
Sbjct: 135 DLWDEIKHKIHKS-ALD--------------LSGGQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFD 214
GLD + ++ + L Q++ + SE ++ + + L D
Sbjct: 180 GLDPIASMKVES-LIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 143 RGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISL 202
R +SGG+K+RV + DE + LD T + N L + + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 203 LQPAPETY-NLFDDIILLSDGQIVYQG-PRELVLEFFES 239
PE +L D I L +G+I +G P E+V F E
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 733 LTALMGVSGAGKTTLM---DVLAGRKTGGYITGSIKISGYPKKH----------ETFARI 779
+TAL+G SG GK+T + + + G + G I + +P E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 780 SGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV- 837
S ++ + PF ++ E++A+ +R R+ +EE +E N LR + +
Sbjct: 102 SMVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALW 148
Query: 838 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
G N LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 149 DEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFA----RI 779
+S R G A++G +G+GK+TL +LAG +G + I +P ++ RI
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDYSYRSQRI 89
Query: 780 SG-YCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
+ + + +P + + L F LRL +++ E R+ I E + V L P S
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDHASY-- 145
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 146 YP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/111 (18%), Positives = 43/111 (38%)
Query: 1097 IPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAA 1156
+ + + +++ + G + L + G + ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1157 IVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDL 1207
+V ++ L + F G L P P +P + +W + P + GL+ +GDL
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 27/165 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSIKISGYPKKHETFAR 778
LNG++ + G L A++G G GK++L+ L K G++ ++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL---RQS 835
I QND ++ E++ F L + + + +E L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880
+G GVN LS Q++R+++A + +N I D+P S +DA
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY---------PKKHETFARISGYCEQN 786
L+G SGAGK++L+ VL + +G++ I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 787 DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN------PLRQSLVGLP 840
P +TV ++L A R+ + + E+++E + L PL
Sbjct: 91 YNLWPHLTVQQNL-IEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 901 IHQ 903
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
+L+G+S P ++G +GAGK+++++ L + G I I A+
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC-----DVAKF 1303
Query: 780 SGYCEQNDIHSPFVTVHES-LAFSAWLRLAPEVDSETRKMFIEEIMELVEL-NPLRQSLV 837
D+ + +S + FS +R + SE + E +E + + + ++
Sbjct: 1304 G----LTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 838 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 73/238 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGE 61
LGP +GKTT + + G + SG +T++G + + +R A I +
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFY-PN 86
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
+T RE L AR +G R + E+
Sbjct: 87 LTARENLRLLAR--LLGIRKKRIDEV---------------------------------- 110
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLDSSTT 180
L V+GL + + ++G S G K+R+ ++G P L + +DE + GLD
Sbjct: 111 --LDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPDL-LILDEPTNGLDPDGI 162
Query: 181 FQIVNCLR----QNI------HINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
++ + Q I H+ SE ++ D I +++ G+++ +G
Sbjct: 163 KELRELILSLRDQGITVLISSHLLSEIQKVA------------DRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 51/189 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP--QRTAAYISQHDNHIGE 61
L+GP GK+T L + G L +G + N + + +P QR + Q
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAAQRQIGILFQDALLFPH 91
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
++V + L F+ A +K G +
Sbjct: 92 LSVGQNLLFAL--------------------PATLK---------------GNARRNAAN 116
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
L+ GLD + +SGGQ+ RV ++ A+ +DE + LD +
Sbjct: 117 AALERSGLDGAF-----HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA--- 168
Query: 182 QIVNCLRQN 190
LR
Sbjct: 169 -----LRDQ 172
|
Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 68/312 (21%), Positives = 114/312 (36%), Gaps = 99/312 (31%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH------ 55
T LLGP +GK+T LL L G L GRV MG V ++
Sbjct: 34 TALLGPNGAGKSTLLLHLNG---IYLPQRGRVKV----MGREVNAENEKWVRSKVGLVFQ 86
Query: 56 --DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
D+ + TV + +AF G+ E+ RR + A
Sbjct: 87 DPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------------------- 122
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FM 168
LK + + + D+ +S GQKKRV + LAM +
Sbjct: 123 ----------LKAVRMWDFR-----DKPPYHLSYGQKKRVA-----IAGVLAMDPDVIVL 162
Query: 169 DEISTGLDSS---TTFQIVNCLRQNIHINSETAVISLLQPAPETYNL------FDDIILL 219
DE LD T +I++ L H +T +++ T+++ D +I+L
Sbjct: 163 DEPMAYLDPRGQETLMEILDRL----HNQGKTVIVA-------THDVDLAAEWADQVIVL 211
Query: 220 SDGQIVYQGPRELVL--EFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFI 277
+G+++ +G + L+ + E G + P + + L E+ K +P
Sbjct: 212 KEGRVLAEGDKSLLTDEDIVEQAGLRLPLVAQIFEDLPELGQSK----------LPL--- 258
Query: 278 TVQEFAEAFKSF 289
TV+E + +
Sbjct: 259 TVKEAVQIIRKL 270
|
Length = 274 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 35/197 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGSIKISGYPKKHETFA 777
LN VS + G +++G +G+GK+T + R G + +G I I G E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 778 RIS---GYCEQNDIHSPFV--TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV----- 827
I G QN + FV TV + +AF + P + + R + E +ELV
Sbjct: 78 DIRHKIGMVFQNP-DNQFVGATVEDDVAFGLENKGIPHEEMKER---VNEALELVGMQDF 133
Query: 828 -ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
E P R LS Q++R+ IA + P II +DE TS LD +++T
Sbjct: 134 KEREPAR-----------LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 887 VRNTVDT-GRTVVCTIH 902
++ D TV+ H
Sbjct: 183 IKGIRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 56/218 (25%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKIS-GYPKKHETFAR 778
+L +S +F PG ++G++GAGK+TL+ ++AG G + + G +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGI--------K 69
Query: 779 ISGYCEQNDIHSPFVTVHE-------------------SLAFSAWLRLAPEVDSETRKMF 819
+ GY Q P TV E S F+ E D++ +
Sbjct: 70 V-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA-------EPDADMDALL 121
Query: 820 -----IEEIMELVELNPLRQSL------VGLPG----VNGLSTEQRKRLTIAVELVANPS 864
++EI++ + L + L + P V LS +R+R+ + L++ P
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 865 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHN---MGEFVPQRTAAYISQHDN 57
++GP SGK+T + L D + SG + +G + + ++ +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ T+RE +A G D ++ E
Sbjct: 413 LLFSGTIRENIAL------------------------GRPDATDEEIEEALKLANAHEF- 447
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ L + D +VG E +SGGQ++R+ ++ + +DE ++ LD+
Sbjct: 448 --------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231
T I + L+ + T +I+ T D II+L +G+IV +G E
Sbjct: 499 ETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 60/258 (23%), Positives = 95/258 (36%), Gaps = 61/258 (23%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE------FVPQRTAAYISQ 54
+T L+G GK+T + L+G L G V + G + + Q+ A
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 HDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQ 114
+ I + +AFS R GV E+ RR +D + V +
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPEA-----EITRR-----------VDEALTLVDAQH- 128
Query: 115 EANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTG 174
+ I+ +S GQKKRV +V A + +DE + G
Sbjct: 129 ----------------------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTFQIVNCLR----QNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-P 229
LD + Q++ +R Q H+ + I L+ Y + D + +L GQI+ G P
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQILTHGAP 220
Query: 230 RELVL--EFFESMGFKCP 245
E+ E E G P
Sbjct: 221 GEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 38/134 (28%)
Query: 111 TEGQEANVITDYYLKVLGLDNCADILVGDEMIR----GISGGQKKRVTTGEMMVGPALAM 166
+EA Y++++GLD + ++ +SGGQK+RV + LAM
Sbjct: 136 VSKEEAKKRAAKYIELVGLD--------ESYLQRSPFELSGGQKRRVALAGI-----LAM 182
Query: 167 -----FMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDI----- 216
DE + GLD +I+ N++ +T ++ T++L D++
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILV-------THDL-DNVLEWTK 233
Query: 217 --ILLSDGQIVYQG 228
I DG+I+ G
Sbjct: 234 RTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
L+QS GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 145 LKQS--GL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 47/198 (23%)
Query: 721 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GS 763
++ VS A+R VL AL+G +G+GK+TL +L G Y G
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 764 IKISGYPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFI 820
I++ G P H + +Q+ P V F A + L ++ E +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD----PVVLAD---TFLANVTLGRDISEEQ----V 446
Query: 821 EEIMELVELNPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873
+ +E V+L L +SL +G G N LS Q++ L +A LV P I+ +DE T+
Sbjct: 447 WQALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 874 GLDA---RAAAIVMRTVR 888
+D+ +A + VR
Sbjct: 506 NIDSGTEQAIQQALAAVR 523
|
Length = 592 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1262 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.98 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.98 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.98 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.98 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.98 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.98 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.98 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.98 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.98 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.98 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.98 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.98 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.98 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.98 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.98 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.98 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.98 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.98 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.98 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.98 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.98 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.98 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.98 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.98 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.98 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.98 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-189 Score=1722.48 Aligned_cols=1181 Identities=54% Similarity=0.934 Sum_probs=1065.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
|+.++||+||||||||++|+|.++......|+|.+||++.++...++.++|++|+|.|+|.+||||+|.|+++|++++.+
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58899999999999999999999876666889999999998877788999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
++ +..++++. ...+|.+++.+||++|+||+|||+..||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~-----------------------~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKL-----------------------AAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHH-----------------------HHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 76 22222221 12578899999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHhC
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~~ 240 (1262)
++|+++++||+|+|||+.++.+++++|+++++..+.|.++.++|++++++++||+|++|.+|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchhhHhhhhcccccc
Q 000838 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQSHRAALAKKVYGV 320 (1262)
Q Consensus 241 g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1262)
||.||++++++||+.++++..++.+.|.....++...+..++.+.|.+++.+.++..+++.+.++.+.++.....+.|.+
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888888877888888899999999999999999999998888888888888899999
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHHHHHHHHHHHh
Q 000838 321 GKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMT 400 (1262)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 400 (1262)
+.++|++.|+.|.+.+++||.++++...++.+++++++|++|+++.. ++..+...+.|.+|+++++.++++++++...
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999998763 4455677899999999999999999999999
Q ss_pred hhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000838 401 IVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480 (1262)
Q Consensus 401 ~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 480 (1262)
++++|+++|||+..+|+||++.++.+++++|+.++.+.+|.+|.||++|+.+++++||.+++++++.++++.++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCcccccC------------CC
Q 000838 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSWRKFT------------PD 548 (1262)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~~~~~------------~~ 548 (1262)
+++++.+|+.++++..++...++||+++..+||+||+|++|++|+.|++++++.|||++++|.|.. ..
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~ 674 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKV 674 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999872 11
Q ss_pred ---CCCcchHHHhhhcCcc-----CCCcchhHhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCcccc
Q 000838 549 ---SNEPLGVQVLKSRGFF-----PDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYLYHLHFNYFKSKFDKPQAVIT 620 (1262)
Q Consensus 549 ---~~~~~g~~~L~~~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1262)
...+.|.++++..++. +...|+|+++|+++++.++|.+...+++.|.... +....++.
T Consensus 675 c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~--------------~~~~~~l~ 740 (1391)
T KOG0065|consen 675 CAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL--------------KKSGAILV 740 (1391)
T ss_pred chhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc--------------ccccceee
Confidence 2345678888877766 7788999999999999999999999999887642 12222221
Q ss_pred cccccchhhhcccccccccccCCCCCcccccCCCCCccCCCCCCcccchhcccCCCcccccCCCCCCCCCcEEEEeeeEE
Q 000838 621 EDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTY 700 (1262)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1262)
.+...+.......+. +.. . +........++.++..|..+..+.++|+.+
T Consensus 741 ~~~~~~~~~~~~~~~--------~~~--------------------~---~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~ 789 (1391)
T KOG0065|consen 741 FKKGKEKKKVKSAGS--------SSE--------------------I---EKLDDSSHQEKNKMVLPFTPLSLTFKDVFY 789 (1391)
T ss_pred eccchhhhcchhccc--------ccc--------------------c---cccccccccccccccCCCccccccccceEE
Confidence 111111100000000 000 0 000000011234455666667777888887
Q ss_pred EEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceE
Q 000838 701 SVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780 (1262)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~ 780 (1262)
.++++-..+.+| +++++|+|||+.++||.++||||+|||||||||++|+||...|.++|+|++||.|.+.+.++|.+
T Consensus 790 w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 790 WVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred EEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 777776665555 57889999999999999999999999999999999999998889999999999998878899999
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000838 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 860 (1262)
Q Consensus 781 ~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~ 860 (1262)
|||.|+|.|.|.+||+|.|.|++.+|.+.+.+.+++.++||++++.++|++++|.+||.++ +|||.+||||++||.+|+
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred hCC-CCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh------------------------
Q 000838 861 ANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA------------------------ 915 (1262)
Q Consensus 861 ~~p-~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~------------------------ 915 (1262)
.|| .||+|||||||||+.++..|++.+|++++.|+||+||+||||.+||+.||+.
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~ 1025 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIE 1025 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHH
Confidence 999 8999999999999999999999999999999999999999999999999991
Q ss_pred ----cCCcccCCCCCCchhhHHHhcchhhhhhccccHHHHHHhhHHHHhhHHHHhhhcCCCCC-CCCCCCCCccCCchHH
Q 000838 916 ----IPGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPG-SKDLYFPTQYSQSAFT 990 (1262)
Q Consensus 916 ----~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 990 (1262)
+++. .|++..|||||+||+++...+.....||++.|++|++|+++++++++++++.++ ..+..++++|++|+|.
T Consensus 1026 YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~ 1104 (1391)
T KOG0065|consen 1026 YFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWY 1104 (1391)
T ss_pred HHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHH
Confidence 1222 577777999999999998877777889999999999999999999999988877 6667778889999999
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhh
Q 000838 991 QFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVE 1070 (1262)
Q Consensus 991 q~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~ 1070 (1262)
|++.+++|+++.+||+|.|+++|++..++.||++|+.||++|+ +++|+++.+|++|.++++.+..++..+.+.+..|
T Consensus 1105 Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e 1181 (1391)
T KOG0065|consen 1105 QFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATE 1181 (1391)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Confidence 9999999999999999999999999999999999999999984 6899999999999999999888777677777889
Q ss_pred hhHHHhhccCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000838 1071 RTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTP 1150 (1262)
Q Consensus 1071 r~v~~re~~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1150 (1262)
|.+++||+.+|+||+.+|++|++++|+|+.++++++|.+++|+++||.+++.+|++|++.+++..++.+++|+|+.+++|
T Consensus 1182 ~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tP 1261 (1391)
T KOG0065|consen 1182 RLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTP 1261 (1391)
T ss_pred hhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCcccc----------CCCCcHHHH
Q 000838 1151 NHHIAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKL----------ESGETVKQF 1220 (1262)
Q Consensus 1151 ~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~----------~~g~~~~~~ 1220 (1262)
|.++|+.+.+.+++++.+|||+++|++.||.||+|+||+||+.|.+++++..++||.+..| |+|.|+++|
T Consensus 1262 n~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~ 1341 (1391)
T KOG0065|consen 1262 NLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEF 1341 (1391)
T ss_pred ChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887 246799999
Q ss_pred HHhhcC----CcccchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000838 1221 LRSYFG----YKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262 (1262)
Q Consensus 1221 ~~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1262 (1262)
+.+.+| |.++..-....+.++|.+++.++..+..+|.+++||
T Consensus 1342 m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1342 MEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 999999 766655555566778999999999999999999986
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-185 Score=1820.80 Aligned_cols=1243 Identities=62% Similarity=1.086 Sum_probs=1052.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|+++|+.+++|+|.+||+++.+...++.++||+|+|.+++.+||+|||.|++++++.+.+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886677999999999987655567899999999999999999999999998876555
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
+++..+..++++..+..++.+.+.+++....++.+.+..++.+++.+||++++||.||++.+++|||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 44433444444444444444444444444444455566788999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHhC
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~~ 240 (1262)
++|+++||||||+|||+.++.++++.|+++++..++|+|+++||+.++++++||+|++|++|+++|+||.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999877567788888888899999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchhhHhhhhcccccc
Q 000838 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQSHRAALAKKVYGV 320 (1262)
Q Consensus 241 g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1262)
||.||++.+++||+.++.+..+++++|.....|+...++++++++|+++..+++..++++.+.++.+.++.......|..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999998766666655555656678899999999998877776665544433322333334456889
Q ss_pred cHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHHHHHHHHHHHh
Q 000838 321 GKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISMT 400 (1262)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 400 (1262)
++++|++.+++|.++..+||+..++.++++.+++|+++|++||+.+.+.....+...+.|.+|+++++.+++++.++..+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765444344556778999999888888999999999
Q ss_pred hhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000838 401 IVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRFIAA 480 (1262)
Q Consensus 401 ~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 480 (1262)
+.+||+|+|||+.++|++++|++++++.++|+.++.+++|++|+|||+|+++++++|+.|++++++..+++.++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCccccc-CCCCCCcchHHHhh
Q 000838 481 TGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSWRKF-TPDSNEPLGVQVLK 559 (1262)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~~~~-~~~~~~~~g~~~L~ 559 (1262)
+++++.+|+.+++++.+++++++||+++.++||+||+|++|+||+.|++++++.|||.+..|.+. +.+.....|..+|+
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776532 23345678999999
Q ss_pred hcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCcccccccccchhhhccccccccc
Q 000838 560 SRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELS 639 (1262)
Q Consensus 560 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1262)
.+++.....|+|++++++++++++|.++.+++|.+....... .....++............... .
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~ 817 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKK--------------QAIISEETAEEMEGEEDSIPRS-L 817 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCC--------------Cccccccchhhhhccccccccc-c
Confidence 999988888999999999999999999999999887632110 0110000000000000000000 0
Q ss_pred ccCCCCCcccccCCCCCccCCCCCCcccchhcc-cCCCcccccCCCCCCCCCcEEEEeeeEEEEecchhhhhccccCCce
Q 000838 640 TLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEA-AGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKL 718 (1262)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1262)
+........ ..+ .. -+............. ........+.++..|.++..+.|+|++|.++.+...+..+..++++
T Consensus 818 ~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~ 893 (1470)
T PLN03140 818 SSADGNNTR-EVA-IQ--RMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893 (1470)
T ss_pred ccccccccc-ccc-cc--ccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCc
Confidence 000000000 000 00 000000000000000 0000011223445677888999999999998765543333344566
Q ss_pred EEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHH
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHES 798 (1262)
Q Consensus 719 ~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 798 (1262)
.+|+|||++++|||+++|+|||||||||||++|+|+.+++..+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 89999999999999999999999999999999999877666789999999886544566789999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHH
Q 000838 799 LAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878 (1262)
Q Consensus 799 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~ 878 (1262)
+.|++.++.+...+.++++++++++++.+||.+++|+.+|.+.+++|||||||||+||++|+.+|+||||||||+|||+.
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 99998887655556666677899999999999999999998877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc----------------------------CCcccCCCCCCchh
Q 000838 879 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI----------------------------PGIEKIKNGYNPAT 930 (1262)
Q Consensus 879 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~----------------------------~~~~~~~~~~npad 930 (1262)
++..+++.|++++++|+|||+++|||+.++++.||+.+ .+.+.||+++||||
T Consensus 1054 ~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd 1133 (1470)
T PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133 (1470)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchh
Confidence 99999999999998899999999999999999999821 12335899999999
Q ss_pred hHHHhcchhhhhhccccHHHHHHhhHHHHhhHHHHhhhcCCCCCCCCCCCCCccCCchHHHHHHHHHHHHHHHhcChhhH
Q 000838 931 WMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPYT 1010 (1262)
Q Consensus 931 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~ 1010 (1262)
|++|+++.+.+.....||++.|++|++++++++.++++..+.++.....+.++|+.|+++|+++|++|+++++||||.++
T Consensus 1134 ~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~ 1213 (1470)
T PLN03140 1134 WMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYN 1213 (1470)
T ss_pred hhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHH
Confidence 99999876655455578999999999999888777776655444443344567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHhhccCCCCChHHHHH
Q 000838 1011 AVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWAL 1090 (1262)
Q Consensus 1011 ~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~~re~~~~~Y~~~~~~~ 1090 (1262)
++|+++.+++|+++|++||+++++..+++++++++|++|++++++++.++.+++|.+..||+||+||+++|+|++++|++
T Consensus 1214 ~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~l 1293 (1470)
T PLN03140 1214 LVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAI 1293 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 99999999999999999999998766778999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 000838 1091 AQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170 (1262)
Q Consensus 1091 a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1170 (1262)
|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|..+++++++++++|+
T Consensus 1294 a~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~ 1373 (1470)
T PLN03140 1294 AQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS 1373 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCccccC-C----CCcHHHHHHhhcCCcccchhHHHHHHHHHHHH
Q 000838 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE-S----GETVKQFLRSYFGYKHDFLGVVAVVVAGFAAV 1245 (1262)
Q Consensus 1171 G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~-~----g~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 1245 (1262)
||++|+++||+||+|+||+||++|+++|+++|||+|.+..|+ + +.++++|+++.|||+++++|++++|+++|+++
T Consensus 1374 Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~ 1453 (1470)
T PLN03140 1374 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453 (1470)
T ss_pred eeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHH
Confidence 999999999999999999999999999999999999887653 2 36789999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCC
Q 000838 1246 FGFLFALGIKQFNFQRR 1262 (1262)
Q Consensus 1246 ~~~~~~~~l~~~~~~~r 1262 (1262)
|+++++++++++|||||
T Consensus 1454 f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1454 FAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHHHhhcccC
Confidence 99999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-165 Score=1637.40 Aligned_cols=1180 Identities=31% Similarity=0.530 Sum_probs=959.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC-CceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS-LKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~-~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||||+|+|+.++. ...+|+|.+||.++.+. ..++.++||+|+|.+++.+||+|||.|+++++.+
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 12499999999987532 2345699999999999999999999999877632
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccc-hhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE-ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
....+.. ..++ .++.++.+++.+||++++||.||++.+++|||||||||+||
T Consensus 169 ~~~~~~~---------------------------~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA 221 (1394)
T TIGR00956 169 QNRPDGV---------------------------SREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221 (1394)
T ss_pred CCCCCCC---------------------------CHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence 1100000 0001 12234678999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1262)
++|+.+|+|++|||||+|||+.++.++++.|+++++..++++|+++||+++++.++||++++|++|+++++|+++++.+|
T Consensus 222 ~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 222 EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 99999999999999999999999999999999987655778888888888999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCc---hh-----
Q 000838 237 FESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKS---QS----- 308 (1262)
Q Consensus 237 ~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 308 (1262)
|+++|+.||++.+++||+.++.++.++.. +...+. ....+.+++++.|+++..+++..++++...++. ..
T Consensus 302 F~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 302 FEKMGFKCPDRQTTADFLTSLTSPAERQI-KPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred HHHcCCCCCCCCChHHHHHhccChhhhhc-cccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 99999999999999999999987654321 111011 122567899999999887666555443221110 00
Q ss_pred --hH-----hhhhcccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhH
Q 000838 309 --HR-----AALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGV 381 (1262)
Q Consensus 309 --~~-----~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~ 381 (1262)
.. .......+..++++|++.+++|.++..+||+..+..++++.+++++++|++||+.+.+ ..+.+.+.|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~ 456 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TSDFYSRGGA 456 (1394)
T ss_pred HHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHH
Confidence 00 0112345778999999999999999999999999999999999999999999976543 2346678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHH
Q 000838 382 MFFAIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQY 461 (1262)
Q Consensus 382 lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~ 461 (1262)
+|+++.+..+.++..+...+.+|++++|||..++|++++|++++.++++|+.++.+++|.+|+|||+|+++++++|+.++
T Consensus 457 lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~ 536 (1394)
T TIGR00956 457 LFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH
Confidence 99999998888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCc
Q 000838 462 FLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHS 541 (1262)
Q Consensus 462 ~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~ 541 (1262)
+++++..+++.++++++++++++..+|+.+++++.+++++++||+++..+||+||+|++|+||+.|++++++.|||.+..
T Consensus 537 l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccC--C----------------------CCCCcchHHHhhhcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 000838 542 WRKFT--P----------------------DSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNR 597 (1262)
Q Consensus 542 ~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~~ 597 (1262)
+.|.. | +.....|.++|+. .+.....|.|++++++++++++|.++.++++.+...
T Consensus 617 ~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 617 FECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 87741 1 1123478899985 444456789999999999999999999999988763
Q ss_pred cccccccccccccCCCCCCcccccccccchhhhcccccccccccCCCCCcccccCCCCCccCCCCCCcccchhcccCCCc
Q 000838 598 GYLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAGGVI 677 (1262)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1262)
....+....+.+. ..+.......+.+.+....++...+.. ... .. + .....
T Consensus 696 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~----------------~~-----~-~~~~~ 746 (1394)
T TIGR00956 696 AKQKGEILVFRRG---SLKRAKKAGETSASNKNDIEAGEVLGS----TDL----------------TD-----E-SDDVN 746 (1394)
T ss_pred cCCCCceEeeccc---cccchhhcccccccccccccccccCCC----Ccc----------------cc-----c-ccccc
Confidence 2111110000000 000000000000000000000000000 000 00 0 00000
Q ss_pred ccccCCCCCCCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC
Q 000838 678 QPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 757 (1262)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~ 757 (1262)
.......+.....+.|+|++++++.. ++++.+|+|||++++|||++||+|||||||||||++|+|+.++
T Consensus 747 --~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~ 815 (1394)
T TIGR00956 747 --DEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT 815 (1394)
T ss_pred --ccccccccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000000112357899999987532 1346799999999999999999999999999999999998764
Q ss_pred C-eeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000838 758 G-YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836 (1262)
Q Consensus 758 ~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 836 (1262)
+ +.+|+|.+||.+... .+++.+|||+|+|.+++.+||+|++.|++.++.+...+.++++++++++++.++|.+++|+.
T Consensus 816 g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~ 894 (1394)
T TIGR00956 816 GVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV 894 (1394)
T ss_pred CCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCe
Confidence 3 457999999998743 46778999999999999999999999998888665556666777899999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCC-CcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 837 VGLPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 837 ~~~~~~~~lSgGqrqrl~ia~al~~~p~-illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+|.++ .+||||||||++||+||+.+|+ ||+|||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+.
T Consensus 895 v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~v 973 (1394)
T TIGR00956 895 VGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973 (1394)
T ss_pred eCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEE
Confidence 88653 3899999999999999999997 999999999999999999999999998889999999999998889999982
Q ss_pred c---------------------------CCcccCCCCCCchhhHHHhcchhhhhhccccHHHHHHhhHHHHhhHHHHhhh
Q 000838 916 I---------------------------PGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYRGNKALIEDL 968 (1262)
Q Consensus 916 ~---------------------------~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 968 (1262)
+ .|.+.||+++|||||++|+++.+.+.....++.+.|+.|+++++..+.++..
T Consensus 974 l~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1053 (1394)
T TIGR00956 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRL 1053 (1394)
T ss_pred EEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHh
Confidence 1 1223699999999999999876544334468999999999988776655544
Q ss_pred cCCCCCC---CCCCCCCccCCchHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhH
Q 000838 969 SKPTPGS---KDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAM 1045 (1262)
Q Consensus 969 ~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~ 1045 (1262)
..+.... .......+++.|+++|+++|++|+++++||||.++++|+++++++|+++|++||++++ +++++++|+
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~ 1130 (1394)
T TIGR00956 1054 EAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQM 1130 (1394)
T ss_pred hcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHH
Confidence 3221111 1111124688999999999999999999999999999999999999999999999975 478999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHhhhhHH-HhhccCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhH-
Q 000838 1046 GSMYIAVLFIGVQYCFSVQPIVSVERTIF-YRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAK- 1123 (1262)
Q Consensus 1046 g~lf~~~~~~~~~~~~~~~~~~~~~r~v~-~re~~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~- 1123 (1262)
|++|+++++.++. +..++|.++.+|.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1131 g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~ 1209 (1394)
T TIGR00956 1131 FAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209 (1394)
T ss_pred HHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccc
Confidence 9999988877765 345567788888886 8999999999999999999999999999999999999999999988766
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHHHHHHH
Q 000838 1124 ------FFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLY 1197 (1262)
Q Consensus 1124 ------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~ 1197 (1262)
|++|++++++..++++++|+++++++||.++|+.+++++++++++|+||++|+++||+||+|++|+||++|+++
T Consensus 1210 ~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~ 1289 (1394)
T TIGR00956 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQ 1289 (1394)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccccC----------CCCcHH--------------------------------HHHHhhcCCcccchhHH
Q 000838 1198 GLVVSQFGDLEDKLE----------SGETVK--------------------------------QFLRSYFGYKHDFLGVV 1235 (1262)
Q Consensus 1198 ~l~~nef~~~~~~~~----------~g~~~~--------------------------------~~~~~~~~~~~~~~~~~ 1235 (1262)
|++.|||++.+..|+ +|.+|+ +|+. .+|++.+++|+|
T Consensus 1290 ~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~ 1368 (1394)
T TIGR00956 1290 ALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRN 1368 (1394)
T ss_pred HHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccc
Confidence 999999999887662 244444 3433 568889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC
Q 000838 1236 AVVVAGFAAVFGFLFALGIKQFNFQR 1261 (1262)
Q Consensus 1236 ~~il~~~~~~~~~~~~~~l~~~~~~~ 1261 (1262)
++|+++|++++ +++++++.|....+
T Consensus 1369 ~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1369 FGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred hhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 99999999988 88888888875544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-89 Score=839.80 Aligned_cols=559 Identities=32% Similarity=0.562 Sum_probs=482.0
Q ss_pred CCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEC
Q 000838 689 EPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKIS 767 (1262)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~ 767 (1262)
.+..+.|+|+++....+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567889999988764321 3578999999999999999999999999999999999998763 689999999
Q ss_pred CccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 768 GYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 768 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
|++...+.+++.+|||.|+|.++|.+||+|++.|++.+|.+...+.++++++|+++++.+||.+++|+.+|+...+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877778899999999999999999999999999999999888889999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc-----------
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI----------- 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~----------- 916 (1262)
||||||+||.+|++||+||++||||||||+.++.++++.|++++++|+|||+++|||+.++|++||+.+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred -----------CCcccCCCCCCchhhHHHhcchhhhhhccccHHHHHHhhHHHH--hh-HHHHhhhcCCCCCCCCCCCCC
Q 000838 917 -----------PGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYR--GN-KALIEDLSKPTPGSKDLYFPT 982 (1262)
Q Consensus 917 -----------~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 982 (1262)
.|. +||+..|||||++|+.+.+.......+..+.++....++ +. .+.............. .+.
T Consensus 254 ~~~~~~~ff~~~G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 330 (613)
T KOG0061|consen 254 SPRELLEFFSSLGF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK--VEI 330 (613)
T ss_pred CHHHHHHHHHhCCC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc--ccc
Confidence 122 599999999999999884310000111112222111111 00 0000000100000011 111
Q ss_pred ccCCchHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhh
Q 000838 983 QYSQSAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFS 1062 (1262)
Q Consensus 983 ~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 1062 (1262)
....+||.|++.|++|.+++.+|||.+...|+++.+++|+++|++||+++. +..++++|.|++||.+.+..+..+..
T Consensus 331 ~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~~~f~~~~~ 407 (613)
T KOG0061|consen 331 GTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSFMTFLSMFG 407 (613)
T ss_pred ccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 126899999999999999999999999999999999999999999999965 45677899999999999998888888
Q ss_pred hhhhhHhhhhHHHhhccCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000838 1063 VQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYG 1142 (1262)
Q Consensus 1063 ~~~~~~~~r~v~~re~~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~ 1142 (1262)
.++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|.+|+|||+|++++..+|++|++++++..+++++++
T Consensus 408 ~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~ 487 (613)
T KOG0061|consen 408 AVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLG 487 (613)
T ss_pred HHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCccccC-C-----CCc
Q 000838 1143 MMAVAMTPNHHIAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE-S-----GET 1216 (1262)
Q Consensus 1143 ~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~-~-----g~~ 1216 (1262)
.+++++.||...|..+++++++++++|+||+++.++||+||+|++|+|+++|++||+++|||.+....|. . ..+
T Consensus 488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~ 567 (613)
T KOG0061|consen 488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCEST 567 (613)
T ss_pred HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987333331 1 124
Q ss_pred HHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000838 1217 VKQFLRSYFGYKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQRR 1262 (1262)
Q Consensus 1217 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1262 (1262)
+.+++ ...++...+.|.|+.+++++.++|++++|++|++....+|
T Consensus 568 ~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 568 GEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 55554 4589999999999999999999999999999998876654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-89 Score=852.77 Aligned_cols=544 Identities=29% Similarity=0.488 Sum_probs=475.4
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCccCCcccccceEEEecCCCCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVT 794 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 794 (1262)
+++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987543 357999999998765567788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCC
Q 000838 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873 (1262)
Q Consensus 795 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGqrqrl~ia~al~~~p~illlDEPts 873 (1262)
|+||+.|++.++.+...+.++++++++++++.+||.+++|+.+|+++ .++||||||||++||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666667777889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc---C------C------------cccCCCCCCchhhH
Q 000838 874 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI---P------G------------IEKIKNGYNPATWM 932 (1262)
Q Consensus 874 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~---~------~------------~~~~~~~~npad~~ 932 (1262)
|||+.++..+++.|++++++|+|||+++|||+.++++.||+++ . | ...||++.|||||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 9999999999999999988899999999999999999999932 0 1 02589999999999
Q ss_pred HHhcchhhhhh-----ccccHHHHHHhhHHHHhhHHHHhhhcCCCCC---CCCCCCCCccCCchHHHHHHHHHHHHHHHh
Q 000838 933 LEVTAASQEVA-----LGVDFTDIFKRSELYRGNKALIEDLSKPTPG---SKDLYFPTQYSQSAFTQFIACLWKQHWSYW 1004 (1262)
Q Consensus 933 l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 1004 (1262)
+|+++.+.+.. ...++.+.|+.|+.+++..+.......+.++ ........++..++++|+.+|++|+++..|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 355 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVL 355 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 99986543211 1234566777777666554433321111111 111112235678999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHhhccCCCCC
Q 000838 1005 RNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYS 1084 (1262)
Q Consensus 1005 r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~~re~~~~~Y~ 1084 (1262)
|||.++..|+++.+++|+++|++||+++. +++++++|.|++|++++++++.+++++.+.++.||++|+||+.+|+|+
T Consensus 356 R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~ 432 (617)
T TIGR00955 356 RDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 99999999999999999999999999875 467899999999999999888887788888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000838 1085 GQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFG 1164 (1262)
Q Consensus 1085 ~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 1164 (1262)
+++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++||..+|+.+++++++
T Consensus 433 ~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~ 512 (617)
T TIGR00955 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCcc-ccCCC------CcHHHHHHhhcCCcccchhHHHH
Q 000838 1165 LWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLED-KLESG------ETVKQFLRSYFGYKHDFLGVVAV 1237 (1262)
Q Consensus 1165 ~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~-~~~~g------~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1262)
++++|+||++++++||+||+|++|+||++|++||++.|||.+.++ +|+++ +..++++++.||++.++.|++++
T Consensus 513 ~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~ 592 (617)
T TIGR00955 513 PFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLI 592 (617)
T ss_pred HHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999998775 56421 11136667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Q 000838 1238 VVAGFAAVFGFLFALGIKQFNFQRR 1262 (1262)
Q Consensus 1238 il~~~~~~~~~~~~~~l~~~~~~~r 1262 (1262)
++++++++|++++|++|++-...+|
T Consensus 593 il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 593 GLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999777766
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-89 Score=845.50 Aligned_cols=559 Identities=24% Similarity=0.391 Sum_probs=459.6
Q ss_pred CCcEEEEeeeEEEEecchhhh--------------hc--cccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 000838 689 EPHSLIFDEVTYSVDMPQEMK--------------LQ--GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~ 752 (1262)
.+..+.|.|++|.+....... .. ....+++.+|+|+|+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 357889999999986542100 00 11224578999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 000838 753 GRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832 (1262)
Q Consensus 753 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 832 (1262)
|+.++...+|+|.+||.+... ..++.+|||+|++.+++.+||+|++.|.+.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999987643 2345689999999999999999999998877655444555666779999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHh
Q 000838 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 912 (1262)
Q Consensus 833 ~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~f 912 (1262)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999887788999999999999999999999999999999999999999999999998889999999999998899999
Q ss_pred hhhc----------------------CCcccCCCCCCchhhHHHhcchhhhh------hc---cccHHHHHHhhHHHHhh
Q 000838 913 DEAI----------------------PGIEKIKNGYNPATWMLEVTAASQEV------AL---GVDFTDIFKRSELYRGN 961 (1262)
Q Consensus 913 d~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~------~~---~~~~~~~~~~s~~~~~~ 961 (1262)
|+.+ .|. .||.++|||||++|+.+.+.+. .. ..+..+.|+... .++.
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 352 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKV 352 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHH
Confidence 9832 121 5999999999999998753210 00 011233443211 1111
Q ss_pred HHHHhh--hcC-CCC-----CCCCC-CCCCccCCchHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCC
Q 000838 962 KALIED--LSK-PTP-----GSKDL-YFPTQYSQSAFTQFIACLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLG 1032 (1262)
Q Consensus 962 ~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~ 1032 (1262)
.+.++. ..+ ..+ ..... .....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111111 000 000 00000 011224578999999999999988 89999999999999999999999999974
Q ss_pred CCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHhhccCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 000838 1033 TKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVY 1112 (1262)
Q Consensus 1033 ~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~~re~~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y 1112 (1262)
..++++|.|++||++++.++.+++.+++.++.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 432 -----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 -----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 467999999999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHH
Q 000838 1113 AMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPM 1192 (1262)
Q Consensus 1113 ~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~ 1192 (1262)
||+||++++.+||+|+++++++.++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHHhhCCCcc-----ccCCC----CcHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000838 1193 AWTLYGLVVSQFGDLED-----KLESG----ETVKQFLRSYFGYKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNF 1259 (1262)
Q Consensus 1193 ~y~~~~l~~nef~~~~~-----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1259 (1262)
+|++||+++|||++.+. .|+.. .....++ ...+++..+.|.++++|++++++|++++|++|++.+|
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999986542 45311 0111122 2234445578999999999999999999999998875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-88 Score=897.22 Aligned_cols=568 Identities=23% Similarity=0.380 Sum_probs=486.2
Q ss_pred CCCCcEEEEeeeEEEEecchh-------------hh-h-----ccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 000838 687 PFEPHSLIFDEVTYSVDMPQE-------------MK-L-----QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 747 (1262)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~-------------~~-~-----~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTL 747 (1262)
|.+...+.|+|+++....... .. . .+..+.++++|+|||+.+++||+++|+||||||||||
T Consensus 24 ~~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTL 103 (1394)
T TIGR00956 24 KPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTL 103 (1394)
T ss_pred CCCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 334567899999877632111 00 0 0122345789999999999999999999999999999
Q ss_pred HHHHHCCCCC--CeeEEEEEECCccCCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCC----CCCHHHHHH-
Q 000838 748 MDVLAGRKTG--GYITGSIKISGYPKKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP----EVDSETRKM- 818 (1262)
Q Consensus 748 l~~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~- 818 (1262)
||+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+|++.|++.++.+. +.++++.++
T Consensus 104 Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 183 (1394)
T TIGR00956 104 LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH 183 (1394)
T ss_pred HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 9999998532 2468999999987642 234567999999999999999999999998876532 223333333
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 000838 819 FIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 897 (1262)
Q Consensus 819 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tv 897 (1262)
.++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+||
T Consensus 184 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tv 263 (1394)
T TIGR00956 184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP 263 (1394)
T ss_pred HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEE
Confidence 356789999999999999998888999999999999999999999999999999999999999999999999875 9999
Q ss_pred EEEecCCCHHHHHHhhhhc----------------------CCcccCCCCCCchhhHHHhcchhhhh----------hcc
Q 000838 898 VCTIHQPSIDIFESFDEAI----------------------PGIEKIKNGYNPATWMLEVTAASQEV----------ALG 945 (1262)
Q Consensus 898 i~~~H~~~~~~~~~fd~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~----------~~~ 945 (1262)
|+++|||+.++++.||+++ .|. .||++.|||||++|+++.+.+. ...
T Consensus 264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~ 342 (1394)
T TIGR00956 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTP 342 (1394)
T ss_pred EEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHHHhccChhhhhccccccccCCCCH
Confidence 9999999999999999832 122 6999999999999998654311 123
Q ss_pred ccHHHHHHhhHHHHhhHHHHhhhcCCC---------------CCCCCCCCCCccCCchHHHHHHHHHHHHHHHhcChhhH
Q 000838 946 VDFTDIFKRSELYRGNKALIEDLSKPT---------------PGSKDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPYT 1010 (1262)
Q Consensus 946 ~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~r~~~~~ 1010 (1262)
.+++++|++|+.+++..+.++...... ..++.....+.+..|+++|+++|++|++++.||||.++
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 422 (1394)
T TIGR00956 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFT 422 (1394)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 579999999999887766554322110 00111122345788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHhhccCCCCChHHHHH
Q 000838 1011 AVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRESAAGMYSGQPWAL 1090 (1262)
Q Consensus 1011 ~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~~re~~~~~Y~~~~~~~ 1090 (1262)
++|+++++++|+++|++||+++. +++++++|.|++||++++.++.++.++ +.++.||+||+||+.+|+|++++|++
T Consensus 423 ~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~l 498 (1394)
T TIGR00956 423 LFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAI 498 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHH
Confidence 99999999999999999999975 457899999999999999999887776 44668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 000838 1091 AQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIVSTLFFGLWNVFT 1170 (1262)
Q Consensus 1091 a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1170 (1262)
|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||.++|+.+++++++++++|+
T Consensus 499 a~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~ 578 (1394)
T TIGR00956 499 ASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYT 578 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCccccC----C---------------------C---CcHHHHHH
Q 000838 1171 GFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE----S---------------------G---ETVKQFLR 1222 (1262)
Q Consensus 1171 G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~----~---------------------g---~~~~~~~~ 1222 (1262)
||++|+++||+||+|++|+||++|+|||+++|||++..++|+ . | .++.+|+.
T Consensus 579 Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~ 658 (1394)
T TIGR00956 579 GFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLK 658 (1394)
T ss_pred ccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHH
Confidence 999999999999999999999999999999999999888772 1 1 15678888
Q ss_pred hhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000838 1223 SYFGYKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNF 1259 (1262)
Q Consensus 1223 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1259 (1262)
..||++.+|.|+|++|+++|+++|+++++++++|+++
T Consensus 659 ~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 659 LSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-87 Score=880.86 Aligned_cols=570 Identities=23% Similarity=0.360 Sum_probs=478.5
Q ss_pred CCCCcEEEEeeeEEEEecchh-------h----------h-hcc---ccCCceEEeeceEEEEeCCeEEEEEcCCCCcHH
Q 000838 687 PFEPHSLIFDEVTYSVDMPQE-------M----------K-LQG---VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 745 (1262)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~-------~----------~-~~~---~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKS 745 (1262)
+.+...+.|+|+++..+.... . . ..+ .++.++.+|+|+|+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 344668999999987762110 0 0 001 123457899999999999999999999999999
Q ss_pred HHHHHHHCCCCCC-eeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCC-------CCHHHH-
Q 000838 746 TLMDVLAGRKTGG-YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE-------VDSETR- 816 (1262)
Q Consensus 746 TLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~- 816 (1262)
||||+|+|+.++. ..+|+|.+||++......++.++||+|+|.+++.+||+|++.|++.++.... ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 9999999987532 3589999999887544446789999999999999999999999987763211 111111
Q ss_pred -----------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCC
Q 000838 817 -----------------------KMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873 (1262)
Q Consensus 817 -----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 873 (1262)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999998889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCCCchh
Q 000838 874 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI----------------------PGIEKIKNGYNPAT 930 (1262)
Q Consensus 874 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~----------------------~~~~~~~~~~npad 930 (1262)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+++ .|+ .||+++||||
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf-~cP~~~n~AD 444 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGF-KCPERKGTAD 444 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCC-CCCCCCChHH
Confidence 9999999999999999986 489999999999999999999832 122 6999999999
Q ss_pred hHHHhcchhhh-h-----------hccccHHHHHHhhHHHHhhHHHHhhhcCCCCCCCCCCCCCccCCchHHHHHHHHHH
Q 000838 931 WMLEVTAASQE-V-----------ALGVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQFIACLWK 998 (1262)
Q Consensus 931 ~~l~~~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 998 (1262)
|++|+++..+. . ....++++.|++|+.+++..+.++.........+.....++|..|++.|++.|++|
T Consensus 445 Fl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R 524 (1470)
T PLN03140 445 FLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDK 524 (1470)
T ss_pred HHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHH
Confidence 99999875332 1 12346889999999888766544321111111111112346889999999999999
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHHHhhc
Q 000838 999 QHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIFYRES 1078 (1262)
Q Consensus 999 ~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~~re~ 1078 (1262)
++++.+||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.+|+||+||+
T Consensus 525 ~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker 603 (1470)
T PLN03140 525 EWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQR 603 (1470)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhh
Confidence 99999999999999999999999999999999986554455667788999999988888776554 66789999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000838 1079 AAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHIAAIV 1158 (1262)
Q Consensus 1079 ~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 1158 (1262)
++++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+
T Consensus 604 ~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~ 683 (1470)
T PLN03140 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTG 683 (1470)
T ss_pred hccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCccc---cC-CCC-cHHHHHHhhcCCccc--c
Q 000838 1159 STLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDK---LE-SGE-TVKQFLRSYFGYKHD--F 1231 (1262)
Q Consensus 1159 ~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~---~~-~g~-~~~~~~~~~~~~~~~--~ 1231 (1262)
++++++++++|+||++|+++||+||+|++|+||++|++||+++|||.+..+. |. ++. ++.+++ +.+|++.+ |
T Consensus 684 ~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~ 762 (1470)
T PLN03140 684 GALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNW 762 (1470)
T ss_pred HHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCccccc
Confidence 9999999999999999999999999999999999999999999999876543 21 122 455555 78999754 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000838 1232 LGVVAVVVAGFAAVFGFLFALGIKQFNF 1259 (1262)
Q Consensus 1232 ~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1259 (1262)
.|+++++|++|+++|+++++++|+|++.
T Consensus 763 ~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 763 YWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=799.27 Aligned_cols=542 Identities=25% Similarity=0.443 Sum_probs=481.7
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCccCCcccccceEEEecCCCCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYPKKHETFARISGYCEQNDIHSPFVT 794 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 794 (1262)
.+..+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999975532 235799999998776545788999999999999999
Q ss_pred HHHHHHHHHHhhcCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCccee
Q 000838 795 VHESLAFSAWLRLAPE----VDSETRK-MFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869 (1262)
Q Consensus 795 v~e~l~~~~~~~~~~~----~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 869 (1262)
|+|+|.|+++++.+.. .++.+.. +..+.+++.+||++++|+++|++..||+||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999987632 2222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc----------------------CCcccCCCCC
Q 000838 870 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI----------------------PGIEKIKNGY 926 (1262)
Q Consensus 870 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~----------------------~~~~~~~~~~ 926 (1262)
|+|+|||+.++.++++.||++++. +.|++++.|||+++++++||+++ .|+ .||+..
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf-~cP~r~ 364 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGF-KCPPRK 364 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCc-cCCCcc
Confidence 999999999999999999999875 89999999999999999999932 112 699999
Q ss_pred CchhhHHHhcchhhhh-----------hc-cccHHHHHHhhHHHHhhHHHHhhhcCCCCCCCCCCCCCccCCchHHHHHH
Q 000838 927 NPATWMLEVTAASQEV-----------AL-GVDFTDIFKRSELYRGNKALIEDLSKPTPGSKDLYFPTQYSQSAFTQFIA 994 (1262)
Q Consensus 927 npad~~l~~~~~~~~~-----------~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 994 (1262)
++|||+.++++...+. .. ..++++.|.+|+.+++.+..++........++.....++|..|+|.|++.
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~ 444 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKA 444 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHH
Confidence 9999999998732211 11 25799999999999987765544322233334445566899999999999
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHhHhHHHHHHHHHHHhhhhhhhhhhHhhhhHH
Q 000838 995 CLWKQHWSYWRNPPYTAVRFFFTTLISLMFGTLFWDLGTKTGKNQDLFNAMGSMYIAVLFIGVQYCFSVQPIVSVERTIF 1074 (1262)
Q Consensus 995 l~~R~~~~~~r~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~r~v~ 1074 (1262)
|++|.++.+.||..++..++++.+++|+++|++||+++. .+..+.+.|.|++||++++.+++.+.++ +..++.||||
T Consensus 445 c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~ 521 (1391)
T KOG0065|consen 445 CTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchH
Confidence 999999999999999999999999999999999999983 4567889999999999999999888887 5566899999
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 000838 1075 YRESAAGMYSGQPWALAQAAIEIPYIFIQSSLYGVLVYAMIGFDWTAAKFFWYIFFMFFTLLYFTFYGMMAVAMTPNHHI 1154 (1262)
Q Consensus 1075 ~re~~~~~Y~~~~~~~a~~l~~~P~~~~~~~~f~~~~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1154 (1262)
+|||+..+|+|+||.++.+++++|+.++.+++|.+|+||++||.+++++||+|++++++.++|++++++++++++|+...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcchhhHHHHhhCHHHHHHHHHHHHhhCCCccccC-CCC------------------
Q 000838 1155 AAIVSTLFFGLWNVFTGFLIPRPRIPIWWRWYYWADPMAWTLYGLVVSQFGDLEDKLE-SGE------------------ 1215 (1262)
Q Consensus 1155 a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~-~g~------------------ 1215 (1262)
|+.+|++.++++.+++||+||.++||+||+|++|+||+.|++|++++|||+++++.|+ .|+
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999884 221
Q ss_pred ------cHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000838 1216 ------TVKQFLRSYFGYKHDFLGVVAVVVAGFAAVFGFLFALGIKQFNFQR 1261 (1262)
Q Consensus 1216 ------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1261 (1262)
.+.+|+...|++++.|.|||+||++||.++|.++..+++.|+++.+
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3567788888999999999999999999999999999999999653
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=697.82 Aligned_cols=546 Identities=29% Similarity=0.494 Sum_probs=459.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
++||||||||||||||++|+|+.+.+..++|+|++||++......++.+|||.|+|.++|++||+|+|.|++.+|-+..
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987557899999999887777778899999999999999999999999999875321
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
...++++++|+++++.|||.+|+||+||+...+++||||||||+||..|+
T Consensus 137 ------------------------------~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 137 ------------------------------LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred ------------------------------CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 12234567899999999999999999999888999999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHhC
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~~ 240 (1262)
.||+||+|||||||||+.++.++++.|+++|+. |+|+|++||||+.+++++||++++|++|+++|.|+++++.++|++.
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCch--hhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchhhHhhhhcccc
Q 000838 241 GFKCPQRKGVADFLQEVTSKK--DQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQSHRAALAKKVY 318 (1262)
Q Consensus 241 g~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1262)
|++||++.||+||+.++.+.+ .+...... ......+.++..+...+..+.......+. ...+...
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 332 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGT 332 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhcccc-----ccccccc
Confidence 999999999999999987632 11100000 00000011100000000000000000000 0001111
Q ss_pred cccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHHHHHHH-HH
Q 000838 319 GVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYA-EI 397 (1262)
Q Consensus 319 ~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~ 397 (1262)
..+++.|+..+.+|.++...|++.+...+.++.+++++++|.+||+.+.+. .....+.|++|+.+.+..+.... .+
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~---~~~~~~~g~~~~~~~~~~f~~~~~~i 409 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA---KGIQNRLGLFFFILSFMTFLSMFGAV 409 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 678999999999999999999999999999999999999999999764332 23336788888888777665554 68
Q ss_pred HHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 000838 398 SMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALFRF 477 (1262)
Q Consensus 398 ~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~ 477 (1262)
..+..+++++.||+.+++|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.++.++..+++.+++.+
T Consensus 410 ~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~ 489 (613)
T KOG0061|consen 410 PVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF 489 (613)
T ss_pred HHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCcccccCC--CCCCcchH
Q 000838 478 IAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSWRKFTP--DSNEPLGV 555 (1262)
Q Consensus 478 i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~~~~~~--~~~~~~g~ 555 (1262)
+++..++...|..++++..+.+++++||+++.+++|.||.|+.|+|+++|++|+++.|+|.+....|... ..+...+.
T Consensus 490 i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~ 569 (613)
T KOG0061|consen 490 ISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGE 569 (613)
T ss_pred HHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999744444332 34567788
Q ss_pred HHhhhcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhc
Q 000838 556 QVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLN 596 (1262)
Q Consensus 556 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~ 596 (1262)
+++++.++...+ .|.++.+++++.++++++.+++|++..
T Consensus 570 ~~l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 570 DVLKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988886554 468889999999999999999987654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-72 Score=702.74 Aligned_cols=552 Identities=23% Similarity=0.391 Sum_probs=457.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++.+||+|||.|++.++.....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998875456899999999886555567899999999999999999999999877632110
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCc-ccccccccchhhHHHHHH
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEM-IRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqkqRvsiA~al 159 (1262)
..++.+++++++++.+||.+++||.||++. .++|||||||||+|||+|
T Consensus 133 -------------------------------~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 -------------------------------TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred -------------------------------CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 011234568899999999999999999853 689999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHh
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 239 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~ 239 (1262)
+.+|+|++|||||||||+.++.++++.|+++++ +++|+|+++||++.++.++||++++|++|+++++|+++++.++|++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999875 4778888888888899999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCch---hhHhhhhcc
Q 000838 240 MGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQ---SHRAALAKK 316 (1262)
Q Consensus 240 ~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1262)
+|++||++.|++|++.++.+..+..+.. .....+++.+.++.++..++..++......... .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSENE-------SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCcccccc-------hHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 9999999999999999887643221100 001223445555554443333222211110000 000001123
Q ss_pred cccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHHHHHH-H
Q 000838 317 VYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGY-A 395 (1262)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~ 395 (1262)
.+..+++.|+..+++|.++..+|++..+..++++.+++++++|++|++.+.+ ..+...+.|++|+.+.+..+.+. .
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999975433 23455677888888877766654 4
Q ss_pred HHHHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHHHHHHH
Q 000838 396 EISMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQMACALF 475 (1262)
Q Consensus 396 ~~~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~ 475 (1262)
.+..+..++++++||+..++|++.+|++++.+.++|+.++.+++|.+++|||+|+++++.+|+.+++++.+...++.+++
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCcc-cccCCCC---CC
Q 000838 476 RFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSW-RKFTPDS---NE 551 (1262)
Q Consensus 476 ~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~-~~~~~~~---~~ 551 (1262)
.++++++++..+|..++++..+++++++||+++..++|.||+|++|+||++|++++++.|||.+..+ .|...+. +.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998775 3432111 23
Q ss_pred cchHHHhhhcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhc
Q 000838 552 PLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLN 596 (1262)
Q Consensus 552 ~~g~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~ 596 (1262)
..|..+++.+++..+ +.|.++++++++.++|.++.+++|++..
T Consensus 571 ~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 571 SSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred cChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999998888654 4588999999999999999999987643
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-72 Score=696.49 Aligned_cols=547 Identities=21% Similarity=0.357 Sum_probs=431.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.....
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~ 173 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL 173 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999998874 3589999999987543 235699999999999999999999998765421100
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
..++.+++++++++.+||++++||++|++.+++|||||||||+||++|+
T Consensus 174 -------------------------------~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 174 -------------------------------TKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred -------------------------------CHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 0112334578899999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHhC
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 240 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~~ 240 (1262)
.+|+|++|||||+|||+.++.++++.|+++++ +++|+|+++||+..++.++||++++|++|++++.|+++++.++|+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999865 46777777776666899999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcC---CCCCchh-----hHh-
Q 000838 241 GFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRI---PFDKSQS-----HRA- 311 (1262)
Q Consensus 241 g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~- 311 (1262)
|++||++.||+||+.++.+...........+.+ ...+...+.|++... .+..++.+. .....+. ...
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhccccccc
Confidence 999999999999999988653211000000000 112233344432111 111111000 0000000 000
Q ss_pred hhhcccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHHH
Q 000838 312 ALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMF 391 (1262)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 391 (1262)
...+..+..+++.|+..+++|.++. +|++.+...++++.+++++++|++||+.+ ..+.+.+.|++|+.+++..+
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 0011224567899999999999888 78888888999999999999999999642 23456788999988777554
Q ss_pred -HHHHHHHHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHH
Q 000838 392 -NGYAEISMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQM 470 (1262)
Q Consensus 392 -~~~~~~~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~ 470 (1262)
..+..+..+..+|++++|||.+++|++.+|++++.+.++|+.++.+++|.+|+|||+|+++++++|+.|++++++..++
T Consensus 452 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCcc-----ccc
Q 000838 471 ACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSW-----RKF 545 (1262)
Q Consensus 471 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~-----~~~ 545 (1262)
+.+++.+++++++++.+|+.+++++.+++++|+||+++ ++|+||+|++|+||++|++++++.|||.+... .|.
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~ 609 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCS 609 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCC
Confidence 99999999999999999999999999999999999997 79999999999999999999999999976432 332
Q ss_pred CCCCCCcchHHHhhhcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhh
Q 000838 546 TPDSNEPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFL 595 (1262)
Q Consensus 546 ~~~~~~~~g~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~ 595 (1262)
.+......+..++....+. ....|.+++++++++++++++.+++|++.
T Consensus 610 ~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 610 LPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111011111122222222 22467888999999999999999888653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-71 Score=680.34 Aligned_cols=760 Identities=22% Similarity=0.273 Sum_probs=396.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.+||+|||||||||++++|.++++|+ +|+|.+||.|+.+.+. +.++|.|.|+|.+| ..||+|||.|+....
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~da-- 454 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKPDA-- 454 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCCcc--
Confidence 37999999999999999999999998 9999999999987654 57899999999766 679999999965321
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
..+...+++ +.++..--...|++.+||.||++.+. ||||||||++|||
T Consensus 455 --t~~~i~~a~-----------------------------k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 455 --TREEIEEAA-----------------------------KAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIAR 502 (1228)
T ss_pred --cHHHHHHHH-----------------------------HHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHH
Confidence 111111111 11223334556899999999987764 9999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~ 237 (1262)
||+.||+|||||||||+||+++.+.|.+.|.+.. .|+|+|+ ++|..+.+.+ +|+|++|++|+|++.|+++|+.+.
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~- 577 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL- 577 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc-
Confidence 9999999999999999999999999999998753 4667665 6777777665 999999999999999999999752
Q ss_pred HhCCCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchh--hHhhhhc
Q 000838 238 ESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQS--HRAALAK 315 (1262)
Q Consensus 238 ~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 315 (1262)
. +...-+.........++. .+.+.. ..++.....+.+. .............. .......
T Consensus 578 ---------~-G~Y~~lv~~Q~~~~~~~~-~~~~~~----~~~~~~~s~~~s~----~~~~~~~~~~~~~~~~~~~~~e~ 638 (1228)
T KOG0055|consen 578 ---------G-GIYSSLVRLQELEKAAED-EEEEES----LKEERSRSLKSSS----SSPSLSRGSNRSNLLSVKPEGED 638 (1228)
T ss_pred ---------c-chHHHHHHHHhhhhhhhc-cccccc----hhhhhhhcccccc----ccccccCCccccccccccccccc
Confidence 1 222212211111100000 000000 0000000000000 00000000000000 0000000
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-------HHHh---hccccCCCCcccCccchhhHHHHH
Q 000838 316 KVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALV-------TMTL---FFRTKMKKDSVADGGVYAGVMFFA 385 (1262)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~-------~g~l---f~~~~~~~~~~~~~~~~~g~lf~~ 385 (1262)
..... ..+..+..+.|-++..++++.++++..+.+++.|.. ++.+ |+..+. +........++++|..
T Consensus 639 ~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~--~~~~~~~~~~al~f~~ 715 (1228)
T KOG0055|consen 639 PEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD--DELKREVRAWALIFLG 715 (1228)
T ss_pred ccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHH
Confidence 00000 000022334455566667777777766655554432 2222 221111 1111112224454444
Q ss_pred HHHHHHHH--HHHHHHhhhccceeeec----------ccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccC
Q 000838 386 IVIVMFNG--YAEISMTIVKIPVFYKQ----------RDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPN 453 (1262)
Q Consensus 386 ~~~~~~~~--~~~~~~~~~~~~v~~re----------r~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~ 453 (1262)
+....+.. ............+..|- ++..||.-.-.. +....++. .+
T Consensus 716 l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa--------------------~D 774 (1228)
T KOG0055|consen 716 LGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLA--------------------TD 774 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHh--------------------cc
Confidence 43322211 11111111111111111 112222111111 11111110 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH------HHHhccccCcCCcccchhhhhhhC---H
Q 000838 454 AGRFFKQYFLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVL------FALGGFLLSREDIKKWWIWGYWCS---P 524 (1262)
Q Consensus 454 ~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~------~l~~G~~i~~~~i~~~~~w~~~~s---p 524 (1262)
+.. +--++......+...+++......+|..++|-+.++. +..+++... +++...+ -
T Consensus 775 a~~------vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~--------~~~~~~~~~~~ 840 (1228)
T KOG0055|consen 775 ASN------VRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQK--------KFLKGFSKDDK 840 (1228)
T ss_pred hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHH
Confidence 000 0001111112222223333333334444443332222 222222110 0000000 0
Q ss_pred HHHHHHHHHHhhcCCCcccccCCCCCCcchHHHhhhcCc-----cCCCc--chhHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 000838 525 LMYAQNAIVANEFLGHSWRKFTPDSNEPLGVQVLKSRGF-----FPDAY--WYWLGLGALFGFVLLLHIAFTLALTFLNR 597 (1262)
Q Consensus 525 ~~y~~~~~~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~-----~~~~~--~~~~~~~~l~~~~~~~~i~~~~~l~~~~~ 597 (1262)
-.|.-.+.+.+|-...-.+... .+....+++.+.- ..... -.|.++ .+++...+... ..++.|+..
T Consensus 841 ~~~~ea~~iA~eai~NIrTV~a----l~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl--~f~~sqs~~~~-~~A~~f~~G 913 (1228)
T KOG0055|consen 841 KAYEEASKIAIEAVSNIRTVAA----LCAEEKFMELYKEELEKPRKSSFKRGLISGL--GFGFSQSLLFF-VYALSFWYG 913 (1228)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHh
Confidence 0111112222221110000000 0000111111000 00000 112222 22222111111 111222221
Q ss_pred cccccccccccccCCCCCCcccccccccchhhhcccccccccccCCCCCcccccCCCCCccCCCCCCcccchhcccCCCc
Q 000838 598 GYLYHLHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAGGVI 677 (1262)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1262)
..+.......+...+.......... ..... ..+..+.......+++.++... ++ ....
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta-------~~~~~-----~~s~~Pd~~ka~~Aa~~iF~i~------dr----~~~i 971 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTA-------MALGQ-----ASSYAPDISKAKIAAGSIFEIL------DR----KPTI 971 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHH-------HHHHH-----HHhhCcHHHHHHHHHHHHHHHh------cC----CCCC
Confidence 1111100000000000000000000 00000 0000000000000000000000 00 0001
Q ss_pred ccc-cCCCCCCCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC
Q 000838 678 QPK-KRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 678 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~ 756 (1262)
+.+ ..+...|.-...++++|+++.|+.. ++..||+|+|+++++|+.+||+|||||||||.+.+|-+...
T Consensus 972 ~~~~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 972 DPDSTSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred CCCCCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 111 1122233344679999999999754 35679999999999999999999999999999999998765
Q ss_pred CCeeEEEEEECCccCCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-------
Q 000838 757 GGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL------- 826 (1262)
Q Consensus 757 ~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 826 (1262)
+..|.|.+||.+++. ...|+++|.|.|+|.++. -|++||+.|+. .+.+.++ +.++++.
T Consensus 1042 --p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~Aak~ANaH~FI 1109 (1228)
T KOG0055|consen 1042 --PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIEAAKLANAHNFI 1109 (1228)
T ss_pred --CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHHHHHHhhhHHHH
Confidence 568999999998754 467889999999999986 79999999971 1234333 3344443
Q ss_pred cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000838 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906 (1262)
Q Consensus 827 l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 906 (1262)
.+|.+-.|+.+|..+ .+||||||||++||||+++||+||||||+||.||+++.+.+++.|++.. .|+|.|+++|+++
T Consensus 1110 ~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS- 1186 (1228)
T KOG0055|consen 1110 SSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS- 1186 (1228)
T ss_pred hcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh-
Confidence 356677899999754 4799999999999999999999999999999999999999999999874 6899999999876
Q ss_pred HHHHHhhhh
Q 000838 907 DIFESFDEA 915 (1262)
Q Consensus 907 ~~~~~fd~~ 915 (1262)
.....|..
T Consensus 1187 -TIqnaD~I 1194 (1228)
T KOG0055|consen 1187 -TIQNADVI 1194 (1228)
T ss_pred -hhhcCCEE
Confidence 56666763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=682.14 Aligned_cols=763 Identities=21% Similarity=0.259 Sum_probs=443.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
++||+||.||||||||.+|.|+++.. +|+|.++| .++||+|++++ .+.||||||.||..+. .++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI-~ngTvreNILFG~~~d--~~r 612 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWI-QNGTVRENILFGSPYD--EER 612 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHh-hCCcHHHhhhcCcccc--HHH
Confidence 48999999999999999999999865 99999999 59999999955 5789999999998765 368
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
|+.+.++|..+++.+.+|.+| .|.||++++ +||||||||+++|||++
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NLSGGQKQRISLARAVY 659 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CCcHhHHHHHHHHHHHh
Confidence 999999998888877666655 466887665 79999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHH-HHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH---H
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVN-CLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE---F 236 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~---~ 236 (1262)
+|++|++||+|.|++|+++..++++ +++.. .+++|+| .+|| ..+..+.+|+|++|++|+|.+.|+.+++.+ .
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~~--L~~KT~I-LVTH-ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~ 735 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRGL--LRGKTVI-LVTH-QLQFLPHADQIIVLKDGKIVESGTYEELLKSGGD 735 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--hcCCEEE-EEeC-chhhhhhCCEEEEecCCeEecccCHHHHHhcchh
Confidence 9999999999999999999999995 77654 2345544 4666 577888999999999999999999999874 1
Q ss_pred HHhCCCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchhhH-hhhhc
Q 000838 237 FESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQSHR-AALAK 315 (1262)
Q Consensus 237 ~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 315 (1262)
|+++ ..+... +.+.. ...+.+......... +. +... ..+..++.....+..+.+. ....+
T Consensus 736 ~~~l-------------~~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ee~ 796 (1381)
T KOG0054|consen 736 FAEL-------------AHEEES--EQEEE-ASEKDLESGESSRES-ES-RSLE-SLSSEEEKSKDEKEEEDKLVQEEER 796 (1381)
T ss_pred HHHH-------------hhccch--hhccc-cccccccccccccch-hh-hhhh-hhcccccccccccchhhHHHHHHHH
Confidence 2221 000000 00000 000000000000000 00 0000 0000000000000000000 00001
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHhhc---cccCCCCcc---cCcc----chhhHHHH
Q 000838 316 KVYGVGKRELLKACFSREFLLMKRNSF-VYIFKLVQIAITALVTMTLFF---RTKMKKDSV---ADGG----VYAGVMFF 384 (1262)
Q Consensus 316 ~~~~~~~~~~~~~l~~r~~~~~~r~~~-~~~~~~~~~~i~~l~~g~lf~---~~~~~~~~~---~~~~----~~~g~lf~ 384 (1262)
+.-.+++ ..++ ++++. ..... ..++-+...+..+..+++-|| +++...... .+.. .|..+.+.
T Consensus 797 ~~G~v~~-~vY~----~Y~~a-~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~ 870 (1381)
T KOG0054|consen 797 ETGKVSW-SVYK----KYIKA-AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVA 870 (1381)
T ss_pred hcCEeeH-HHHH----HHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHH
Confidence 1112222 1111 11111 11111 111112222222222222222 222111111 1222 22222222
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHH---
Q 000838 385 AIVIVMFNGYAEISMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQY--- 461 (1262)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~--- 461 (1262)
..++..+.++.....++.....++. -+.+.+.+.|+.|++.. ..+|.++.+
T Consensus 871 ~~~~~~~rs~~~~~~~l~aS~~Lh~------------~ml~~Ilrapm~FFdtT--------------P~GRILNRFSkD 924 (1381)
T KOG0054|consen 871 SSLLTLLRSFLFAKGGLKASRKLHD------------KLLNSILRAPMSFFDTT--------------PTGRILNRFSKD 924 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhCcchhcCCC--------------Cccchhhhcccc
Confidence 2233333333222222222111111 13344555666665542 223333322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHH
Q 000838 462 ----------FLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNA 531 (1262)
Q Consensus 462 ----------~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~ 531 (1262)
.+...+......++.++.....++.+.....++..+.+++..-|....+++++ .--...||+.-.+..
T Consensus 925 ~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR--LesitRSPi~sh~~E 1002 (1381)
T KOG0054|consen 925 IDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR--LESITRSPIYSHFSE 1002 (1381)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hhhcccchHHHhHHH
Confidence 11112222222222333333445566666666666666666666666666554 334456888877776
Q ss_pred HHHhhcCCCcccccCCCCCCcchHHHhhhcC------c--cCCCcchhHhHHHHHHHHHHHHHHHHHHHHhh-ccccccc
Q 000838 532 IVANEFLGHSWRKFTPDSNEPLGVQVLKSRG------F--FPDAYWYWLGLGALFGFVLLLHIAFTLALTFL-NRGYLYH 602 (1262)
Q Consensus 532 ~~~nef~~~~~~~~~~~~~~~~g~~~L~~~~------~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~-~~~~~~~ 602 (1262)
-+..--..+.+.... ..-..+....+ | .....|....+..+..+++++..+..+...-. ......+
T Consensus 1003 tl~GlsTIRAf~~~~-----rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vG 1077 (1381)
T KOG0054|consen 1003 TLQGLSTIRAFGKEE-----RFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVG 1077 (1381)
T ss_pred HhcCcceeeeccccH-----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHH
Confidence 664433333222110 00000000000 0 00112333333333333222222222111111 1123444
Q ss_pred ccccccccCCCCCCcccccccccchhhhcccccccccccCCCCCcccccCCCCCccCCCCCCcccchhcccCCCcccccC
Q 000838 603 LHFNYFKSKFDKPQAVITEDSERDEQDTKIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAGGVIQPKKR 682 (1262)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1262)
+...|...-.+..++.+....+.++++.+.++..++.+.+.+.+.......++.
T Consensus 1078 Lslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~-------------------------- 1131 (1381)
T KOG0054|consen 1078 LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPP-------------------------- 1131 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCC--------------------------
Confidence 444444444444455555555666667777777777665433111100000111
Q ss_pred CCCCCCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEE
Q 000838 683 GMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 762 (1262)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G 762 (1262)
..| ....++|+|++.+|+. +...+|||||++|+|||.+||+|++|||||||+++|.+..+ +.+|
T Consensus 1132 --~WP-~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G 1195 (1381)
T KOG0054|consen 1132 --SWP-SKGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEG 1195 (1381)
T ss_pred --CCC-CCCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCC
Confidence 122 2358999999988853 23469999999999999999999999999999999999876 4589
Q ss_pred EEEECCccCCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccccccc-
Q 000838 763 SIKISGYPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG- 838 (1262)
Q Consensus 763 ~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~- 838 (1262)
+|.|||.++.. .+.|++++.+||||.++. -|+|.||. +..+..++.++++|+..+|.+...+..+
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD----------Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD----------PFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceec-CccccccC----------cccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999998754 467889999999999986 58888774 3334455668999999888765433322
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhh
Q 000838 839 -----LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 913 (1262)
Q Consensus 839 -----~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd 913 (1262)
.+++.++|-||||.+|+||||+++++||+|||+|+++|++|...|+++||+..+ ++|||.+.|+.+ ..-..|
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~D 1341 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSD 1341 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcC
Confidence 235678999999999999999999999999999999999999999999999764 799999999876 444677
Q ss_pred hhc-CCcccCCCCCCchh
Q 000838 914 EAI-PGIEKIKNGYNPAT 930 (1262)
Q Consensus 914 ~~~-~~~~~~~~~~npad 930 (1262)
+++ -.-.++.+...|++
T Consensus 1342 rVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred eEEEeeCCeEeecCChHH
Confidence 753 11124556666654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=683.35 Aligned_cols=203 Identities=27% Similarity=0.400 Sum_probs=174.9
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++. +.+.+|+|||+.|++||++||+||||||||||+|+|+|... +.+|+|.++|.+
T Consensus 1936 ~~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~ 2002 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKS 2002 (2272)
T ss_pred ceEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEE
Confidence 35789999887741 12579999999999999999999999999999999999877 458999999988
Q ss_pred CCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
... ...++.+|||+|++.+++.+|++|++.+.+.++. .+.++.++.++++++.+||.+.+|+.++ .||||
T Consensus 2003 i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGG 2074 (2272)
T TIGR01257 2003 ILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGG 2074 (2272)
T ss_pred CcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHH
Confidence 642 2345679999999999999999999998776653 2334445668899999999988888754 79999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++||+||+.+|+|++|||||+|||+.+++.+++.|++++++|+|||++||++. ++...+|++
T Consensus 2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV 2140 (2272)
T TIGR01257 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRL 2140 (2272)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999878999999999975 566778874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=660.89 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=165.3
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..++|+|++++|+. +.+.+|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999999852 12359999999999999999999999999999999999877 458999999998
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
+.. ..+|+.+++|||++.++.. |++|||.+.. ..+ ++.++++++..++.+. .|+.+|.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 753 4678899999999999875 9999997531 122 2336777887777543 4555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|+|+++|+++ ....+|+++
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIl 1443 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRIL 1443 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEE
Confidence 345799999999999999999999999999999999999999999999875 4899999999875 556789854
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=561.35 Aligned_cols=445 Identities=26% Similarity=0.324 Sum_probs=335.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC-CceeEEEEECCccCCCCcc-------cceEEeecccc--CCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS-LKVSGRVTYNGHNMGEFVP-------QRTAAYISQHD--NHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~-~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTv~e~l~f 70 (1262)
+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++ .+-|.+||.+.|.-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999876 3468999999997754322 36899999995 46677899999987
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
..+.++.. ..+++++++.++|+.+||++.... +++++.||||||
T Consensus 117 ~~~~h~~~---------------------------------~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~r 160 (539)
T COG1123 117 ALRLHGKG---------------------------------SRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMR 160 (539)
T ss_pred HHHHhccc---------------------------------cHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHH
Confidence 76654311 123355677889999999986653 579999999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
|||.||+||+.+|++|++||||++||+.++.+|++.|+++.+ +.++.++++|||...+.++||||+||++|++++.|++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999875 4567888899999999999999999999999999999
Q ss_pred chHHHHHHhCCCCCCCCCChhhHHhhhcCchhhhhhhhhcCCCCCcCCHHHHHHHHhchhhhHHHHHHhcCCCCCchhhH
Q 000838 231 ELVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQEFAEAFKSFHVGQKLADELRIPFDKSQSHR 310 (1262)
Q Consensus 231 ~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1262)
+++.+. |.+..+...+..+.
T Consensus 240 ~~i~~~--------p~hpYT~~Ll~a~p---------------------------------------------------- 259 (539)
T COG1123 240 EEILSN--------PQHPYTRGLLAAVP---------------------------------------------------- 259 (539)
T ss_pred HHHHhc--------cCCcccHHHHhhCC----------------------------------------------------
Confidence 987541 11110000000000
Q ss_pred hhhhcccccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCcccCccchhhHHHHHHHHHH
Q 000838 311 AALAKKVYGVGKRELLKACFSREFLLMKRNSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVM 390 (1262)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~r~~~~~~~~~~~~~i~~l~~g~lf~~~~~~~~~~~~~~~~~g~lf~~~~~~~ 390 (1262)
.........
T Consensus 260 -------------------------------------------------------~~~~~~~~~---------------- 268 (539)
T COG1123 260 -------------------------------------------------------RLGDEKIIR---------------- 268 (539)
T ss_pred -------------------------------------------------------Ccccccccc----------------
Confidence 000000000
Q ss_pred HHHHHHHHHhhhccceeeecccCCCCCchhHHHHHHHHHhhHHHHHHHHhhheeeeeeccccChhhHHHHHHHHHHHHHH
Q 000838 391 FNGYAEISMTIVKIPVFYKQRDLQFFPPWAYALPTWILKIPISFVEVVVWVFVSYYVIGYDPNAGRFFKQYFLLLAVNQM 470 (1262)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~rer~~~~y~~~~~~l~~~l~~lp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~ 470 (1262)
T Consensus 269 -------------------------------------------------------------------------------- 268 (539)
T COG1123 269 -------------------------------------------------------------------------------- 268 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccCcCCcccchhhhhhhCHHHHHHHHHHHhhcCCCcccccCCCCC
Q 000838 471 ACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSREDIKKWWIWGYWCSPLMYAQNAIVANEFLGHSWRKFTPDSN 550 (1262)
Q Consensus 471 ~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~i~~~~~w~~~~sp~~y~~~~~~~nef~~~~~~~~~~~~~ 550 (1262)
T Consensus 269 -------------------------------------------------------------------------------- 268 (539)
T COG1123 269 -------------------------------------------------------------------------------- 268 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHhhhcCccCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCCcccccccccchhhh
Q 000838 551 EPLGVQVLKSRGFFPDAYWYWLGLGALFGFVLLLHIAFTLALTFLNRGYLYHLHFNYFKSKFDKPQAVITEDSERDEQDT 630 (1262)
Q Consensus 551 ~~~g~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1262)
.. .
T Consensus 269 -----------------------------------------------------------------------~~-~----- 271 (539)
T COG1123 269 -----------------------------------------------------------------------LP-R----- 271 (539)
T ss_pred -----------------------------------------------------------------------cc-c-----
Confidence 00 0
Q ss_pred cccccccccccCCCCCcccccCCCCCccCCCCCCcccchhcccCCCcccccCCCCCCCCCcEEEEeeeEEEEecchhhhh
Q 000838 631 KIRGTVELSTLGSSSSLTTRSESGGDIWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKL 710 (1262)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1262)
. .. .+ ....+.++|++..+..++.+-
T Consensus 272 --~-----------~~---------------------------------------~~-~~~ll~V~~l~k~y~~~~~~~- 297 (539)
T COG1123 272 --R-----------GP---------------------------------------LR-AEPLLSVRNLSKRYGSRKGLF- 297 (539)
T ss_pred --c-----------cc---------------------------------------cc-cCceeEeeeeeeeeccccccc-
Confidence 0 00 00 001233444444443221110
Q ss_pred ccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC--Cc---ccccceEEEecC
Q 000838 711 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK--KH---ETFARISGYCEQ 785 (1262)
Q Consensus 711 ~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q 785 (1262)
+...+...+++||||++++||++||+|+||||||||.++|+|...+ .+|.|.++|.+. +. ...++.+-+++|
T Consensus 298 -~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQ 374 (539)
T COG1123 298 -VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374 (539)
T ss_pred -cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEe
Confidence 0012345689999999999999999999999999999999998874 589999999762 11 223456667777
Q ss_pred CC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000838 786 ND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862 (1262)
Q Consensus 786 ~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 862 (1262)
++ .+.|.+||++.+.-........ ...++++++.++++.+||.+ ..+++ +.+||||||||++|||||+.+
T Consensus 375 dp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~ 447 (539)
T COG1123 375 DPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALE 447 (539)
T ss_pred CcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcC
Confidence 75 5789999999998876554332 24566778999999999986 34544 568999999999999999999
Q ss_pred CCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 863 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|++|++|||||.||+..+.++.+.|+++.++ |.|.|++|||.+ -+-...|++
T Consensus 448 P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv 500 (539)
T COG1123 448 PKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRV 500 (539)
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceE
Confidence 9999999999999999999999999999876 999999999975 244566664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=647.99 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=165.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..++|+|++++|+. +.+.+|+|+|++|+|||.+||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999842 12469999999999999999999999999999999999877 458999999998
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
+.. ..+|+.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 643 4678899999999999874 9999997531 122 2336778887777643 3455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|+|+++|+++ ....+|+++
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIl 1440 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKIL 1440 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEE
Confidence 345799999999999999999999999999999999999999999999875 4899999999874 566789864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=648.14 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=165.3
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..++|+|++++|+.. ...+|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 479999999998531 2359999999999999999999999999999999999876 458999999998
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
+.. ..+|+.+++|||++.+++. |++|||.... +.++ +.++++++..++.+. .|+.+|.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 753 4678899999999999985 9999996211 1222 336778888877643 3555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+++
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIl 1490 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVI 1490 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEE
Confidence 345799999999999999999999999999999999999999999999875 4899999999874 567789864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=632.16 Aligned_cols=203 Identities=19% Similarity=0.294 Sum_probs=168.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC------------
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 758 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~------------ 758 (1262)
..++|+|++++|+.. +++.+|+|+||+++||+.+||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999998531 1246999999999999999999999999999999999976641
Q ss_pred ----------------------------------------eeEEEEEECCccCC---cccccceEEEecCCCCCCCCCCH
Q 000838 759 ----------------------------------------YITGSIKISGYPKK---HETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 759 ----------------------------------------~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
+.+|+|++||.++. ...+++.+|||+|++.+++ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 14899999999864 3467889999999999985 899
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+|||.++. ++.+.+ .++++++..++.+ -.|+.+|. ....||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATRE----DVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999852 223332 3666777666543 45777874 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ....+|+++
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Iv 1429 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIV 1429 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEE
Confidence 99999999999999999999986 35899999999874 667888864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-60 Score=578.50 Aligned_cols=192 Identities=23% Similarity=0.369 Sum_probs=156.2
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCC---CCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQND---IHS 790 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 790 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.++|++|++ .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3589999999999999999999999999999999998652 247999999976532 12345689999985 467
Q ss_pred CCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 000838 791 PFVTVHESLAFSAWLRLAP--EVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 867 (1262)
Q Consensus 791 ~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 867 (1262)
+.+|+.||+.+........ ..+.+..++.++++++.+++. +..++.+ ..||||||||++||+||+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 8899999998753211110 012233445688999999996 4666654 4799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 868 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 868 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+|||+.++..+++.|++++++|+|||++|||+. ++.+.+|+++
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~ 476 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVL 476 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEE
Confidence 99999999999999999999999888999999999975 5667788753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=584.01 Aligned_cols=212 Identities=20% Similarity=0.194 Sum_probs=167.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+...... .......+.+|+||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 46788888777421000 0000012469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 772 KH------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
.. ..+++.++|++|++ .+++.+||.|++.+....+. ....++.++++.++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12356799999997 57889999999987654321 112334456688999999996 455665 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ .+....|++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri 534 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRV 534 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 579999999999999999999999999999999999999999999999765 899999999975 456677874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-60 Score=578.58 Aligned_cols=189 Identities=22% Similarity=0.338 Sum_probs=154.7
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCC---CCCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQN---DIHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 792 (1262)
+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 7999999999999999999999999999999999876 358999999976532 1234578999998 457888
Q ss_pred CCHHHHHHHHHHhhc---CC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 000838 793 VTVHESLAFSAWLRL---AP--E-VDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 865 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~---~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 865 (1262)
+||.||+.+....+. .. . ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+|
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 999999987532110 00 0 11222335578899999996 6667664 47999999999999999999999
Q ss_pred cceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 866 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 866 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+..|+++
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~ 480 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIA 480 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEE
Confidence 9999999999999999999999999877999999999975 5666777753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=575.11 Aligned_cols=189 Identities=21% Similarity=0.347 Sum_probs=154.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCC---CCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQND---IHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 792 (1262)
+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 6899999999999999999999999999999999876 458999999977532 12345699999996 57788
Q ss_pred CCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 793 VTVHESLAFSAWLRLA---PEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+|+.||+.+....... .....++.++.++++++.+++. +..++.+ ..||||||||++||+||+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875311100 0012233345688999999995 5666654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||+|||+.++..+.+.|++++++|+|||++|||+. ++.+..|+++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~ 466 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRIL 466 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEE
Confidence 9999999999999999999999878999999999975 5666777753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-59 Score=572.90 Aligned_cols=187 Identities=24% Similarity=0.349 Sum_probs=153.7
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEC-Ccc---CCc------ccccceEEEecCCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKIS-GYP---KKH------ETFARISGYCEQND 787 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~-g~~---~~~------~~~~~~~~~v~q~~ 787 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ ... ...++.++|++|++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 469999999999999999999999999999999999876 458999996 532 111 12345689999999
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000838 788 IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-----LRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862 (1262)
Q Consensus 788 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 862 (1262)
.+++.+||.||+.+...+. ...+..+++++++++.++|.+ ..++. +..|||||||||+|||||+.+
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcC
Confidence 8889999999998754321 122333456788999999975 34554 457999999999999999999
Q ss_pred CCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 863 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. .+.+.+|+.+
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999765 899999999975 4666778753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=627.82 Aligned_cols=197 Identities=20% Similarity=0.261 Sum_probs=165.2
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.|+|++++|+. +.+.+|+||||+|+|||.+||+|+||||||||+++|+|... .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 47999999999853 12469999999999999999999999999999999999864 37999999998
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
+.. ..+|+.++||||++.+++. |++|||.... ..+ ++.++++++.++|.+. .|+.++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 753 4577899999999999974 9999995321 112 3347888888888643 3555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIl 1422 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFL 1422 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEE
Confidence 345799999999999999999999999999999999999999999999875 4799999999874 666799854
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-59 Score=573.18 Aligned_cols=189 Identities=24% Similarity=0.309 Sum_probs=155.9
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---c---cccceEEEecCCC--CC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---E---TFARISGYCEQND--IH 789 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~~~~~~~~v~q~~--~~ 789 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++.. . .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999863 47999999976532 1 1245689999996 47
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 790 SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 790 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
++.+||.||+.+....+.. ..+..+.+++++++++.+++. +..++. +..|||||||||+|||||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 7889999999886533211 122334455688999999997 455665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||+|||+.++..+++.|++++++ |+|||++||++. .+.+..|+.+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~ 497 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVI 497 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEE
Confidence 9999999999999999999999865 899999999975 4556777753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-59 Score=569.41 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=152.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEecCCC---CCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE----TFARISGYCEQND---IHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 792 (1262)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999999999999999999999999876 3579999999865321 1245689999984 47788
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 871 (1262)
+|+.|++......+..........++.++++++.+|+. +..++.+ ..||||||||++||+||+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111000011222345578999999997 6667664 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 872 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 872 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|+|||+.++..+.+.|++++++|.|||++|||+. ++.+..|+.+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~ 474 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVL 474 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 9999999999999999999878999999999985 5667778753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=567.94 Aligned_cols=192 Identities=19% Similarity=0.341 Sum_probs=156.4
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCC---CCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQND---IHS 790 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 790 (1262)
+.+|+|+||++++||+++|+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998752 247999999987532 22356789999995 578
Q ss_pred CCCCHHHHHHHHHH--hhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 000838 791 PFVTVHESLAFSAW--LRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 867 (1262)
Q Consensus 791 ~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 867 (1262)
+.+||+||+.+... ............++.++++++.+++.+ ..++.+ ..||||||||++|||||+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 88999999987532 111001122334456889999999964 456654 4799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 868 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 868 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+++
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~ 474 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVL 474 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 99999999999999999999999888999999999985 5666777753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=621.69 Aligned_cols=198 Identities=24% Similarity=0.284 Sum_probs=166.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.|+|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999999852 12359999999999999999999999999999999999877 458999999998
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
+.. ..+++.++||||++.++.. |++|||... ...+ ++.++++++..++.+. .|+.+|.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 753 4678899999999999874 999999531 1222 2347888888888654 3555654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..+||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|++ +....+|+++
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIl 1515 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKII 1515 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEE
Confidence 3457999999999999999996 89999999999999999999999999864 479999999987 4677899864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=564.90 Aligned_cols=189 Identities=20% Similarity=0.345 Sum_probs=154.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCC---CCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQND---IHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 792 (1262)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 7999999999999999999999999999999999876 458999999976532 12346789999986 47888
Q ss_pred CCHHHHHHHHHHhhcCC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 793 VTVHESLAFSAWLRLAP-E--VDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+|+.||+.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 99999998753211100 0 11223345678999999994 5667664 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+.+
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~ 467 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIV 467 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEE
Confidence 9999999999999999999999888999999999975 4666777753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=554.94 Aligned_cols=190 Identities=16% Similarity=0.274 Sum_probs=150.8
Q ss_pred EEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEecCCC---CCCC
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE----TFARISGYCEQND---IHSP 791 (1262)
Q Consensus 719 ~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~ 791 (1262)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|+. .+++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 48999999999999999999999999999999999876 4589999999775421 1245689999985 3678
Q ss_pred CCCHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcc
Q 000838 792 FVTVHESLAFSAW--LRLAPE-VDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 867 (1262)
Q Consensus 792 ~lTv~e~l~~~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 867 (1262)
.+|+.+|..+... ...... ......++.++++++.+++. +..++. +.+||||||||++||++++.+|+||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8888877433210 000001 12223345678899999985 445655 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 868 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 868 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+|||+.++..+++.|+++.++|+|||++|||+. ++.+..|+++
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~ 462 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRIL 462 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEE
Confidence 99999999999999999999999888999999999985 4666778753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=545.47 Aligned_cols=203 Identities=18% Similarity=0.304 Sum_probs=155.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 467788887763 24699999999999999999999999999999999996531 1479999999764
Q ss_pred Cc----ccccceEEEecCCCCCCC--CCCHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000838 772 KH----ETFARISGYCEQNDIHSP--FVTVHESLAFSAWL--RLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~----~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 842 (1262)
.. ...++.++|++|++.+.+ ..|+.+++.+...- ....... ...++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123467999999876543 25777766543210 0011112 223456889999999987 666654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHH-hhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFES-FDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~-fd~~ 915 (1262)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||++. ++.+. .|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v 473 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRL 473 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeE
Confidence 4799999999999999999999999999999999999999999999998775 47999999975 33333 4543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=469.03 Aligned_cols=191 Identities=27% Similarity=0.342 Sum_probs=162.8
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEecCCCC--
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH------ETFARISGYCEQNDI-- 788 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~-- 788 (1262)
...++++||+++++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ...++.+-.|+|||.
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 35689999999999999999999999999999999998763 5999999998753 235677889999984
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 789 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+.|.+||.|-+.-+...+.+ ..+..++++++.++|+.+||++..-.. .+.++|||||||++||||++.+|++++|
T Consensus 376 LsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~R----YPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNR----YPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhc----CCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 78999999999888766543 457788999999999999998643221 3678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||.||..-+.+|+++|+++.++ |.+-++++||.. -+-.+.|+++
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~vi 498 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVI 498 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEE
Confidence 9999999999999999999999754 999999999975 3455666643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=526.87 Aligned_cols=185 Identities=19% Similarity=0.251 Sum_probs=151.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 578899988763 2459999999999999999999999999999999999876 45899999873
Q ss_pred CcccccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000838 772 KHETFARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 848 (1262)
+.+||++|++. +.+.+|+.|++.+.. . .. ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999864 456799999986421 1 11 1124478899999994 5566654 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||+. .+....|+++
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~ 506 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRII 506 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999876 459999999975 4555667643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=525.69 Aligned_cols=188 Identities=22% Similarity=0.292 Sum_probs=152.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 578889988763 3469999999999999999999999999999999999876 45899998542
Q ss_pred CcccccceEEEecCCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000838 772 KHETFARISGYCEQND-IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 849 (1262)
..+||++|+. .+++.+||.|++.+....... ... +...+++++.+++.+ ..++.+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999996 677889999999876422211 111 122457899999964 445553 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+....|+++
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~ 513 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHIL 513 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999862 4 8999999975 4556677753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=519.79 Aligned_cols=188 Identities=20% Similarity=0.276 Sum_probs=151.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 477889887763 2469999999999999999999999999999999999876 45899998542
Q ss_pred CcccccceEEEecCCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000838 772 KHETFARISGYCEQND-IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 849 (1262)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..++.+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 47788999999987642211 1111 123557899999964 445553 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|||++|||+. .+....|+++
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~ 511 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHIL 511 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999872 48999999974 4555667753
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=518.53 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=154.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. + ..|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 466778876652 1 24899999999999999999999999999999999876 458999886
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875211 111 124678999999988777764 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++|||+. .+....|+++
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvi 525 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLM 525 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999764 899999999975 3555677743
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=506.24 Aligned_cols=184 Identities=22% Similarity=0.324 Sum_probs=147.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 577889988763 3569999999999999999999999999999999999876 45899998741
Q ss_pred CcccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000838 772 KHETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgG 848 (1262)
..+||++|+. .+.+..|+.+++.- . .. ...+..+.++++.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 112345788999999963 556654 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...+|+++
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~ 498 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLY 498 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999987 3 49999999974 4555677643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=503.28 Aligned_cols=187 Identities=24% Similarity=0.317 Sum_probs=150.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-
Confidence 477889988763 3569999999999999999999999999999999999876 45899998 432
Q ss_pred CcccccceEEEecCCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000838 772 KHETFARISGYCEQND-IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGq 849 (1262)
-.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1489999975 5788899999998753210 011 1123477889999985 3456554 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+....|+.
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i 507 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTEC 507 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEE
Confidence 99999999999999999999999999999999999999875 459999999964 344566664
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=455.62 Aligned_cols=189 Identities=20% Similarity=0.376 Sum_probs=157.7
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCC---CCCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQN---DIHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 792 (1262)
.++|+||++++||++||-|-=|||+|-|+++|.|..+ ..+|+|.+||++... +..+.-++|||.| +-+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 4789999999999999999999999999999999654 348999999997643 2345678999987 457888
Q ss_pred CCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCccee
Q 000838 793 VTVHESLAFSAWLRLAP--EVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 869 (1262)
+++.+|+.++...+... -.+....++.+++..+.+++... .+.. +..||||.+|||.|||.|..+|++|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999998873222111 24455556678889999988643 2233 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 870 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 870 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||.|+|..++.+|.++|++++++|++||++|-+. +|+....|+++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIl 472 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRIL 472 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEE
Confidence 99999999999999999999999999999999987 48999999964
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-49 Score=466.37 Aligned_cols=200 Identities=25% Similarity=0.284 Sum_probs=152.9
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcch
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRY 81 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~ 81 (1262)
++|||+|||||||||++|+|...|+ +|+|...+ .-.++|++|++...+..||.+.+.-+..- .+
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~ 95 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTVLDYVIEGFGE-----LR 95 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccHHHHHHhhhHH-----HH
Confidence 6899999999999999999999998 99998865 22699999999898889999999875431 11
Q ss_pred hhhHHHHHHHHhcCCCCCCch---hHHH-HHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 82 DMLMELARREKAAGIKPDPDI---DVYM-KAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
+...+..... ...++.+. ..+. ......+.+.+.++..++..+|+.+. ++.+ .+||||||.||+||+
T Consensus 96 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~ 166 (530)
T COG0488 96 ELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV-----SSLSGGWRRRVALAR 166 (530)
T ss_pred HHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch-----hhcCHHHHHHHHHHH
Confidence 1111111111 00111111 1111 12223456677889999999999876 5444 569999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEE-EecCcc
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV-YQGPRE 231 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~-~~G~~~ 231 (1262)
||+.+|++|+|||||++||..+..++.+.|++. . + ++++++||+..+.+.|++|+-++.|++. |.|..+
T Consensus 167 aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~-g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---P-G-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---C-C-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 999999999999999999999999999999852 3 3 6777999999999999999999999875 555444
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=480.96 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=144.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ +.+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 578899988773 12358999999999999999999999999999999999876 45799998752
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 850 (1262)
..+||++|+. .+.+++.++..+...... .... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~-~~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCF-PGVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhc-CCCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 244566666432211111 1111 234778999999974 44554 357999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++||++|+.+|++|+|||||+|||+.+...+.+.|++. . .|||++|||+. .+....|+.
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv 694 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDEL 694 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999998888764 3 49999999975 355566764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=408.60 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=165.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..-+. +...+++|||++++||++||.|-.|-|-+-|+.+|+|..++ .+|+|.++|.+.
T Consensus 257 vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEec
Confidence 5667777754321 23579999999999999999999999999999999998653 359999999985
Q ss_pred -C---c-ccccceEEEecCCC---CCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 000838 772 -K---H-ETFARISGYCEQND---IHSPFVTVHESLAFSAWLRL----APEVDSETRKMFIEEIMELVELNPLRQSLVGL 839 (1262)
Q Consensus 772 -~---~-~~~~~~~~~v~q~~---~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 839 (1262)
. . ..++.-++|||+|- -+.+.+|+.||+.+...-+. ..-.+....++...++++.++.......
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 2 2 23345689999986 35678999999987643211 1123456667778899999988632211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.+++|+.|++++-+.. |++++.|+.
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrI 473 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRI 473 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhhee
Confidence 124679999999999999999999999999999999999999999999999999999999999986 799999984
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=362.14 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=176.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC----cccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+|||||||||||+||+|+.+++ +|+|.++|.++... ..|+.+|+|+|+.++||.+||-||+..+..--.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 47899999999999999999999998 99999999776422 236789999999999999999999998653210
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
..+.+++++++.++|+.+||.+.+| .++.+|||||||||+||
T Consensus 107 ---------------------------------~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 107 ---------------------------------KLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIA 148 (240)
T ss_pred ---------------------------------CCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHH
Confidence 1233456677889999999999988 67889999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~ 236 (1262)
|||+.+|+++++|||||+|||+...++.+.++++++. +.|.+++||.+..+.+.+|||+.|++|+++++|++++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~--- 223 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF--- 223 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH---
Confidence 9999999999999999999999999999999998753 46667789999999999999999999999999998876
Q ss_pred HHhCCCCCCCCCChhhHHhh
Q 000838 237 FESMGFKCPQRKGVADFLQE 256 (1262)
Q Consensus 237 ~~~~g~~~p~~~~~~~~~~~ 256 (1262)
|..|++....+|+..
T Consensus 224 -----f~~p~~~R~~~FL~~ 238 (240)
T COG1126 224 -----FDNPKSERTRQFLSK 238 (240)
T ss_pred -----hcCCCCHHHHHHHHh
Confidence 345666666666654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=349.50 Aligned_cols=200 Identities=25% Similarity=0.345 Sum_probs=174.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++.++ ++.++|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5678887776 45789999999999999999999999999999999999876 45899999996542
Q ss_pred ----cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 773 ----HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 773 ----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
....|+.+|+|+|+.++||++||.||+.++...- ...++++.++.+.++|+.+||.+.+|.+ +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2356789999999999999999999999875432 2456677788899999999999999887 4589999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||+|||||+.+|+++++|||||.|||+...++.+.+++++++|.|.|++||+... .-+..|++
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~Vadrv 206 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRV 206 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheE
Confidence 9999999999999999999999999999999999999999999999999999998652 23344554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=362.74 Aligned_cols=207 Identities=24% Similarity=0.341 Sum_probs=180.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+.+|+|+||||||||+++|.++..|+ +|+|.++|.++.... .|+.||+++|+..++.+.||+||+.|+.++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 47899999999999999999999999 999999998886543 257899999999999999999999999887
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+. ++++++++|.++|+.+||++.+| .++.+|||||||||+
T Consensus 111 ag~----------------------------------~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVa 151 (339)
T COG1135 111 AGV----------------------------------PKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVA 151 (339)
T ss_pred cCC----------------------------------CHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHH
Confidence 642 22345678999999999999887 788899999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|+||++|||||+|||.+...|+++|++..++ -+.||+++||.++.+.+.|||+.||++|++++.|+..++.
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~-lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998664 4677788999999999999999999999999999998873
Q ss_pred HHHHhCCCCCCCCCChhhHHhhhc
Q 000838 235 EFFESMGFKCPQRKGVADFLQEVT 258 (1262)
Q Consensus 235 ~~~~~~g~~~p~~~~~~~~~~~~~ 258 (1262)
..|++.-..+|+.+..
T Consensus 231 --------~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 --------ANPKHAITQEFIGETL 246 (339)
T ss_pred --------cCcchHHHHHHHHhhc
Confidence 3466555555655443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=348.86 Aligned_cols=199 Identities=26% Similarity=0.367 Sum_probs=173.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++++++.+. ...+|+|+|++|++||+++|+||||||||||||+|+|... +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 456778877763 3579999999999999999999999999999999999887 4589999999887
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
. ...+.+|||+|++.++|.+||.||+.++...+. .++++++++++++++.+||.+..|.+ +.+|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 234678999999999999999999999887653 34456667899999999999999887 5689999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||+|||||+.+|+||+||||+++||+.|+..+++.|.++.++ ++||+++|||... ...+-|+++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRiv 202 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVV 202 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEE
Confidence 999999999999999999999999999999999999998754 8999999999864 445778753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=347.78 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=169.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|++..+.... ....+|+++|++|++||+++|+|||||||||||++|.|...+ .+|.|.++|.+...
T Consensus 3 ~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCc
Confidence 3566765554221 225799999999999999999999999999999999998874 68999999976532
Q ss_pred -------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCC
Q 000838 774 -------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ-SLVGLPGVNGL 845 (1262)
Q Consensus 774 -------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~l 845 (1262)
.-+++.+|||+|+..+.|.+||.||+.+...+.... ....++.++++++.+||.+..+ +. +.+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 124567999999999999999999999877654322 2245666889999999997666 44 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||||+|||||+.+|++++.||||.+||+.+...|++.++++.++ |+|||++|||| ++.+.+|+.+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999866 99999999997 4778888864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.32 Aligned_cols=192 Identities=25% Similarity=0.382 Sum_probs=170.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++++|||||||||+|++|.+++.|+ +|+|.+||+++.+.+ .||.+|||-|+-.+||++||.|||.+-..+.+-
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999999 999999999987654 468999999999999999999999997766542
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc--cccccccCCcccccccccchhhHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN--CADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
..++++++++++++.+||+. .++ ++++.|||||+|||.+
T Consensus 106 ----------------------------------~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv 146 (309)
T COG1125 106 ----------------------------------DKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGV 146 (309)
T ss_pred ----------------------------------CHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHH
Confidence 11234567899999999974 444 8999999999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
||||+.+|+|++||||+++|||.++.++.+.++++.++- ++||+.+|||.+|+.+++|||++|++|+++..+++++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999998875544 4567779999999999999999999999999999999864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=348.11 Aligned_cols=203 Identities=27% Similarity=0.413 Sum_probs=172.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+.. ..+|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~-------------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN-------------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC-------------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5789999998852 259999999999999999999999999999999999877 4689999999886
Q ss_pred CcccccceEEEecCCCCC--CCCCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KHETFARISGYCEQNDIH--SPFVTVHESLAFSAWLRL--APEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~--~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
....-+..+|||||...+ -..+||+|.+..+..-+. ....++ +.++.++++|+.+|+.+.+|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 554445789999996422 223899999987643222 112222 336679999999999999999876 6999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+++
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi 210 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVI 210 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEE
Confidence 9999999999999999999999999999999999999999999988999999999997 5888999964
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=339.85 Aligned_cols=199 Identities=27% Similarity=0.376 Sum_probs=177.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++|+|++..+. ++.+++|+|++|++||++.++|||||||||+||+|.+... +.+|+|++||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 46788876653 4679999999999999999999999999999999999887 46899999999875
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVNGLST 847 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 847 (1262)
. ...||.+|||-|.-.+||++||.||+.+...+. ..++++.+++++|+++.+||.+ +.+++ +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457899999999999999999999999876654 4677888899999999999985 56665 578999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||+|||.+||||+.+|+||+||||+++|||.++..+++.++++.++ |+|||++|||.. |.+.+-|+.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri 206 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRI 206 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceE
Confidence 9999999999999999999999999999999999999999999876 999999999976 677888984
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=325.16 Aligned_cols=198 Identities=26% Similarity=0.331 Sum_probs=173.3
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.|+|++..|.. .+.+|+||||++++||++-|+||||||||||||+|.+... ++.|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 467788766642 3569999999999999999999999999999999999766 46899999999864
Q ss_pred c------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. .-.+|.+|.|+||..+.+..||.||+.|+..... .+..+.++++.++|+.+||.+.++.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 2357899999999999999999999999887653 34567778899999999999988776 56899
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
|||+||++||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||+++|||. ++.+...+
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~ 205 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRH 205 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccC
Confidence 9999999999999999999999999999999999999999999998999999999984 45555544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=367.38 Aligned_cols=204 Identities=27% Similarity=0.405 Sum_probs=180.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++++|||||||||||++|+|+.+|+ +|+|.++|+++++..+ +|.+++|+|+..++|.+||+||+.|+.++++.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-- 105 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV-- 105 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC--
Confidence 36899999999999999999999998 9999999999998765 48999999999999999999999999987653
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..++++++|+++.+.|+|++..| +++++|||||||||+|||||
T Consensus 106 --------------------------------~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 106 --------------------------------PKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred --------------------------------chHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHH
Confidence 12345677899999999999887 67789999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHh
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 239 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~ 239 (1262)
+.+|++++||||+|.||+..+..+...|+++.+ +-+++++.+|||..|+..++|||+||++|++...|++.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely----- 222 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY----- 222 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh-----
Confidence 999999999999999999999999999998644 45577778999999999999999999999999999999984
Q ss_pred CCCCCCCCCChhhHHh
Q 000838 240 MGFKCPQRKGVADFLQ 255 (1262)
Q Consensus 240 ~g~~~p~~~~~~~~~~ 255 (1262)
..|.+.-.++|+.
T Consensus 223 ---~~P~n~fVA~FiG 235 (338)
T COG3839 223 ---ERPANLFVAGFIG 235 (338)
T ss_pred ---hCccchhhhhhcC
Confidence 3455555555543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=347.14 Aligned_cols=203 Identities=26% Similarity=0.312 Sum_probs=175.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.+++++..+... ..+...+|+|||++|++||++||+|+||||||||++++.++.. |.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 4677777655421 1134579999999999999999999999999999999999877 46899999997653
Q ss_pred c------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. +..|+.+|+++|+..++...||.||+.|...+.. .+++++++++.++++.+||.+.++.+ +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3467899999999999999999999999987764 56788899999999999999988886 45899
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
|||||||+|||||+.+|+|||.|||||.|||.+.+.|.+.|+++.++ |.||+++||++. -+-..+|+
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~r 211 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDR 211 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhh
Confidence 99999999999999999999999999999999999999999999765 999999999864 23445555
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=343.95 Aligned_cols=177 Identities=25% Similarity=0.368 Sum_probs=156.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+||+.++.+.++..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~-- 103 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS-- 103 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccc--
Confidence 47999999999999999999999998 999999999883 34567999999999999999999999998765421
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
..+.+.+++++|+.+||.+..| +++++|||||||||+|||||+
T Consensus 104 --------------------------------~~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 104 --------------------------------KAEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred --------------------------------hHhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHh
Confidence 1223446788999999999887 788999999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCC
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDG 222 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G 222 (1262)
.+|+||+||||+++||+.|+.++.+.|.++.++ .+.+|+++||+.+|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998887654 4567778999999999999999999984
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=347.82 Aligned_cols=193 Identities=25% Similarity=0.418 Sum_probs=169.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCc---cCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGH---NMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~---~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
++|++|||||||||||++|+|+..|+ .|.|.+||+ |.+... ..|+||||+|+..+|+.+||.+||.||.+.+.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999999 999999999 555432 34789999999999999999999999987652
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .+..+++.++.++|+.++|++.++ +++.+|||||||||++|
T Consensus 107 ~~--------------------------------p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALA 149 (345)
T COG1118 107 ER--------------------------------PSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALA 149 (345)
T ss_pred cC--------------------------------CChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHH
Confidence 10 012234667889999999999776 88999999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+..|++|+||||+++||+..+.++.+.|++... +-+.+.+.+|||.+|+.++||||++|++|+|...||++++.
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~-~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD-RLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH-hhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999998754 33556667999999999999999999999999999999884
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=362.93 Aligned_cols=201 Identities=32% Similarity=0.447 Sum_probs=175.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..+. .++.+|+||||++++||++||+||||||||||+|+|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 345677776663 13679999999999999999999999999999999999887 4689999999876
Q ss_pred Cc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 772 KH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
.. ...++.+||++|++.+++.+||+|++.|.+.++.... ...+++++++++.+||.+..++. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 53 4567889999999999999999999999999886543 34556799999999999855554 45799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHhhhh
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||++||+||+++|+++||||||+||||.++..+++.|++++++| +||+++||+++ ++...+|++
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v 207 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRV 207 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999887 89999999986 677789974
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=327.64 Aligned_cols=206 Identities=25% Similarity=0.423 Sum_probs=169.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD--SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+||+||||||||||||+++.++.. |..+++|+|.++|+++.+. ..|+++|+|+|.|+-|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999998865 3457899999999998543 24688999999999998 899999999998
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCC-cccccccccCCcccccccccchh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGL-DNCADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~LSGGqkqR 152 (1262)
+++... .+.+++|+..|+.-.| ++..|.+ ++...+|||||+||
T Consensus 114 ~~g~~~----------------------------------~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD----------------------------------KELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQR 157 (253)
T ss_pred hhccch----------------------------------HHHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHH
Confidence 876421 1123345555666666 3344433 13455799999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++|||||+.+|+|||||||||+|||.+...|.+++.++. .+-+|+++||++.++.+..|++..+..|++++.|++++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999999999863 35677779999999999999999999999999999998
Q ss_pred HHHHHHhCCCCCCCCCChhhHH
Q 000838 233 VLEFFESMGFKCPQRKGVADFL 254 (1262)
Q Consensus 233 ~~~~~~~~g~~~p~~~~~~~~~ 254 (1262)
+ |..|+++...||+
T Consensus 235 i--------F~~P~~~~TedYi 248 (253)
T COG1117 235 I--------FTNPKHKRTEDYI 248 (253)
T ss_pred h--------hcCccHHHHHHHh
Confidence 7 3457666666654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=366.11 Aligned_cols=207 Identities=28% Similarity=0.409 Sum_probs=182.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++++|||||||||||++|+|+..|+ +|+|.++|++++...+ +|.+|+|+|+..+||.|||+||+.|+.+.++..
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~- 108 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL- 108 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC-
Confidence 46899999999999999999999999 9999999999987765 588999999999999999999999998744310
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..++++++++++++.++|++.++ +++.+|||||||||+|||||
T Consensus 109 --------------------------------~~~~i~~rv~e~L~lV~L~~~~~-----R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 109 --------------------------------KKAEIKARVEEALELVGLEGFAD-----RKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred --------------------------------CHHHHHHHHHHHHHHcCchhhhh-----hChhhhChHHHHHHHHHHHh
Confidence 11235668999999999999776 77889999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHHHh
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFES 239 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~~~ 239 (1262)
+.+|++||||||.|+||..-+.++...|+++.+.. +++.+.+|||-+|+..++|||+||++|+|...|+++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei------ 224 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI------ 224 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH------
Confidence 99999999999999999999999999999887654 56677799999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHhhh
Q 000838 240 MGFKCPQRKGVADFLQEV 257 (1262)
Q Consensus 240 ~g~~~p~~~~~~~~~~~~ 257 (1262)
|..|...-.++|+.+.
T Consensus 225 --Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 225 --YERPATRFVADFIGES 240 (352)
T ss_pred --hhCcchHHHHHHhCcc
Confidence 3456666677776643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=359.49 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=133.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.+.|+++.++. +-.++++++|-+.+++.++++||||+|||||||++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 46778888877652 1258999999999999999999999999999999999877 446776533221
Q ss_pred CCcccccceEEEecCC--CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKHETFARISGYCEQN--DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
.+++..|+ +.+.-..++-|++.=.. .++.+.+.+..++..+||....+.. ..++||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 12233333 22223356666654211 1123445588899999998554433 24689999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||.++||-.
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR 567 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh
Confidence 999999999999999999999999999999999988888765 458999999854
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=330.97 Aligned_cols=193 Identities=24% Similarity=0.351 Sum_probs=166.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+|||||||||||++|.|+++|+ +|+|.++|.++.... .++++|+++|+-.+|.++||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999999 999999999986543 246799999999999999999999997653
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCccc-ccccccCCcccccccccchhh
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNC-ADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqkqRv 153 (1262)
+.. .+....++.+..-|+.+||... +| .++..||||||||+
T Consensus 113 ~~~---------------------------------lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRv 154 (263)
T COG1127 113 HTK---------------------------------LPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRV 154 (263)
T ss_pred hcc---------------------------------CCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchHHHHH
Confidence 210 1122344556677899999875 44 78889999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+||||++.||+++++|||||||||.++..+.++++++.+. -+.|++++|||.+++...|||+++|.+|+|+..|+++++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987654 455667799999999999999999999999999999998
Q ss_pred HH
Q 000838 234 LE 235 (1262)
Q Consensus 234 ~~ 235 (1262)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 64
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=328.40 Aligned_cols=203 Identities=28% Similarity=0.360 Sum_probs=178.1
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.+++++.+. +.++|++|||++|++||+++|+||||+||||||++|.|... +.+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 467888988765 46789999999999999999999999999999999999887 458999999988
Q ss_pred CCc------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCC
Q 000838 771 KKH------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVN 843 (1262)
Q Consensus 771 ~~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~ 843 (1262)
+.. ...++.+|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 642 2456789999999999999999999999754 33456677778888888999999887 5554 56
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||++||++||||++.+|+|+++||||+||||.++..+-++|+++.+. |.|++++|||.. +++...|++.
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~ 217 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVA 217 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEE
Confidence 89999999999999999999999999999999999999999999999877 999999999986 6888888853
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.05 Aligned_cols=200 Identities=28% Similarity=0.375 Sum_probs=179.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..+. +..+++|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467888887763 1228999999999999999999999999999999999877 4689999999987
Q ss_pred Cc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+. .++++.+++++++.+.|+|.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 65 3456889999999999999999999999987764 35677888899999999999999987 458999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+++|+++|||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.+.|+.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri 204 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRI 204 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEE
Confidence 9999999999999999999999999999999999999999876 899999999974 788899984
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=320.39 Aligned_cols=196 Identities=22% Similarity=0.303 Sum_probs=166.7
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~~~ 767 (1262)
..+.++|+++.|. ++++|+|||+.|++++++|++|||||||||||+++.... ++...+|+|.++
T Consensus 6 ~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 3567788887773 567999999999999999999999999999999999853 233678999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
|+++-. ...|+.+|.|+|.+..|| +|++||+.|+.++....+ ++.++.|++.|+...|++........ ..
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~-sa 147 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHK-SA 147 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhC-Cc
Confidence 988632 356889999999999999 999999999988875443 56778899999999998644333222 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
.+|||||+||+||||||+.+|+|||||||||+|||.+...|-++|.+++ +.-|||++||.+.
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq 209 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ 209 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH
Confidence 5799999999999999999999999999999999999999999999997 4689999999764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=342.26 Aligned_cols=204 Identities=27% Similarity=0.372 Sum_probs=173.3
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+..+|+++.|. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367889998884 4689999999999999999999999999999999999877 4589999999986
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ..+.|.++|+||.......+||+|.+.++..-+... ....++.++.++++++.+|+.+.+++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 457789999999998888999999999875432211 1112334446899999999999999875 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+.|||||+++|+||+||||||+||...+.++++.++++.+ +|+|||+++||++. .....|+.+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i 210 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLI 210 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEE
Confidence 999999999999999999999999999999999999999999985 49999999999874 455667643
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=354.58 Aligned_cols=202 Identities=28% Similarity=0.392 Sum_probs=179.9
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++..+. +..+++|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEE
Confidence 3678889887763 4679999999999999999999999999999999999887 458999999999
Q ss_pred CCc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 771 KKH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 771 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
+.. ...+|.+|+|+|+-.+||+|||.||+.|+.+++. ...+++.+++++++++.++|.+..+.+ +.+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHH
Confidence 765 3457889999999999999999999999987442 334566778899999999999998886 45899999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. |.+.+-|++
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI 207 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRI 207 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccce
Confidence 99999999999999999999999999999999999999999765 999999999975 678888984
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=311.47 Aligned_cols=191 Identities=22% Similarity=0.372 Sum_probs=165.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
++||+||||||||||||+|+|+..|. +|+|++||.+.+...+ .|-+++++||+++|..+||.+|+.++..- +-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P---~L 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP---GL 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc---cc
Confidence 48999999999999999999999998 9999999999865543 57899999999999999999999987531 10
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
+ -.++.+++++.++..+||..+.+ +.+.+|||||||||++||+|
T Consensus 101 k-------------------------------L~a~~r~~v~~aa~~vGl~~~~~-----RLP~~LSGGqRQRvALARcl 144 (231)
T COG3840 101 K-------------------------------LNAEQREKVEAAAAQVGLAGFLK-----RLPGELSGGQRQRVALARCL 144 (231)
T ss_pred c-------------------------------cCHHHHHHHHHHHHHhChhhHhh-----hCccccCchHHHHHHHHHHH
Confidence 0 11223456788999999999877 55668999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+-+|++||||+|+|||.-+.++.+++.+++.++ +.|++++||+.+++.+.+|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999987654 556677888889999999999999999999999988764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=323.88 Aligned_cols=205 Identities=26% Similarity=0.292 Sum_probs=171.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..++ +++++|+|||++|++||+++|+|||||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 577889887774 35789999999999999999999999999999999999766 5689999999765
Q ss_pred Cc------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000838 772 KH------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLR-----LAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840 (1262)
Q Consensus 772 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 840 (1262)
.. +.+++.+||++|+..+.+.+||.+|+..+..-+ ..-+...++.+..+-+.|+.+|+.+.+-++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 346788999999999999999999998763211 11122334445567789999999998877644
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.|||||+|||+|||||+.+|+|+|.|||+++|||.+++.+|+.|+++.++ |.|||++.||... ..+.+|+++
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Rii 219 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRII 219 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhhe
Confidence 69999999999999999999999999999999999999999999999865 9999999999753 345677754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=342.33 Aligned_cols=195 Identities=30% Similarity=0.445 Sum_probs=166.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.++||||++...+.+||+|-+.+|..-+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~- 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL- 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc-
Confidence 48999999999999999999999998 9999999999876544 3789999999888889999999999753210
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
.++. ...++.++.+++.|+.+|+.+.++ +.+..|||||||||.|||
T Consensus 106 -~~~~----------------------------~~~~~D~~~v~~aL~~~~~~~la~-----r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 106 -GLFG----------------------------RPSKEDEEIVEEALELLGLEHLAD-----RPVDELSGGERQRVLIAR 151 (258)
T ss_pred -cccc----------------------------CCCHhHHHHHHHHHHHhCcHHHhc-----CcccccChhHHHHHHHHH
Confidence 0100 011222346888999999999988 556689999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||+++|+||+||||||+||...+.++++.++++++++ +.+|+++.||...+.++||++++|++|+++.+|++++++
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999999987654 456677899999999999999999999999999998765
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=336.60 Aligned_cols=191 Identities=30% Similarity=0.455 Sum_probs=172.0
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc---cCCc-ccccceEEEecCCCCCCCC
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY---PKKH-ETFARISGYCEQNDIHSPF 792 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~~~ 792 (1262)
...+++|||++|+.||++|++|||||||||||++|+|... +..|.|.+||. +.+. ....|.+|||+|+..+++.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999887 45899999998 5443 3456889999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 872 (1262)
|||.||+.|+..++ ....++.+.+.+++++|+.+.|++..+.+ +.+|||||||||++||||+..|++||||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998777 33455667788899999999999998886 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 873 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 873 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
++||..-+.++.+.|+++.++ |.|++++|||+. ++++.+|++.
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvv 209 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVV 209 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEE
Confidence 999999999999999999876 999999999985 7999999953
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=330.84 Aligned_cols=181 Identities=27% Similarity=0.414 Sum_probs=154.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-------ccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|.|+..|+ +|.|.++|.++.... +++.+|||+|+..++|++||.||+..++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 48999999999999999999999998 999999998886543 24679999999999999999999999876
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
+.+.... +.++.++.+++.+||++..+ +.++..|||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRV 151 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRV 151 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHH
Confidence 6542100 12345678899999987654 245778999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
+|||||+.+|++++.||||.+||+.++..|++.++++.+. .+++|+++||| +++...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd-~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHD-PELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCC-HHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999998764 35667778998 566779999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=354.42 Aligned_cols=194 Identities=31% Similarity=0.469 Sum_probs=169.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--CcccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE--FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++++||||||||||+|+|+|++.|+ +|+|.++|.+... ...++.+||++|++.+++.+||+|||.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 47999999999999999999999998 9999999988765 234578999999999999999999999999887531
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
. .+.+++++++++.+||.+.++ +.+++||+|||||++||+|
T Consensus 110 ~----------------------------------~~~~~~~~~~l~~~~L~~~~~-----~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 110 K----------------------------------EEAEERIEELLELFGLEDKAN-----KKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred h----------------------------------hHHHHHHHHHHHHcCCchhhC-----cchhhcCHHHHHHHHHHHH
Confidence 0 112346788999999998554 4556899999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~ 237 (1262)
|+++|+++||||||+||||.++.++++.|+++++. ++++|+++||..+++..+||+|++|++|++++.|+.+++...+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 99999999999999999999999999999998753 4467778999999999999999999999999999988876654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=316.16 Aligned_cols=187 Identities=29% Similarity=0.354 Sum_probs=170.4
Q ss_pred EEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEecCCCCCCCCCCHH
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH--ETFARISGYCEQNDIHSPFVTVH 796 (1262)
Q Consensus 719 ~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~ 796 (1262)
.+++||||+++.||++||+|||||||||+|++|++... |.+|.|.+||.+... ...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999887 458999999988533 45788999999888899999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCC
Q 000838 797 ESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876 (1262)
Q Consensus 797 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 876 (1262)
|||.|.+++.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|+++++||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998864 4456677889999999999999999876 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 877 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 877 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+.+.+.+.++++.++|++||++||... |+..++|+++
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvi 204 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVI 204 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEE
Confidence 99999999999999888999999999874 7888999854
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=314.91 Aligned_cols=191 Identities=29% Similarity=0.345 Sum_probs=168.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+|||||||||+|++|++++.|+ +|+|+++|.+.... ..++.+|.++.+..++..||++|||.|-+++.+.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l- 105 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL- 105 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh-
Confidence 58999999999999999999999999 99999999987543 3367899999888899999999999998877542
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.+.+.+.+++++.+.|+|.++.|+.+| ++|-||||||+||||
T Consensus 106 ---------------------------------~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARA 147 (245)
T COG4555 106 ---------------------------------SRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147 (245)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHH
Confidence 123345678889999999999998877 599999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||||||..+++.+.+.++++. ..+.+|+..+|.++|+.++||++++|++|++++.|+.+++..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999998752 335677789999999999999999999999999999987754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=317.40 Aligned_cols=200 Identities=25% Similarity=0.367 Sum_probs=166.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+|||||||||||++|+|..+|+ +|+|.+||.++.... .++.+||++|++.+.+.+||.+|+..+...
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999998 999999998876543 247899999999999999999999987654
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
+. +.+. ...++.+ .+.+..+-+.|+.+|+.+.+.++.+ +|||||+|||+
T Consensus 109 ~~--s~~~---------slfglfs---------------k~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVa 157 (258)
T COG3638 109 YT--STWR---------SLFGLFS---------------KEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVA 157 (258)
T ss_pred cc--hHHH---------HHhCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHH
Confidence 32 1111 1111111 1223445678999999998886654 69999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+++|+|+|.|||+++|||.+++++++.|++.++..+. |+++..|+.+.+.++||||+-|++|+++|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~-Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGI-TVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCC-EEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 999999999999999999999999999999999998876554 4555778899999999999999999999999998865
Q ss_pred H
Q 000838 235 E 235 (1262)
Q Consensus 235 ~ 235 (1262)
+
T Consensus 237 ~ 237 (258)
T COG3638 237 D 237 (258)
T ss_pred H
Confidence 4
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=344.26 Aligned_cols=201 Identities=27% Similarity=0.386 Sum_probs=174.1
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++..+. ++.+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 4688999988773 3569999999999999999999999999999999999876 458999999988
Q ss_pred CCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
... ...++.+||++|++.+++.+||+||+.|.+.++. .+..+.+++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765542 233444556889999999998888765 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i 208 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRL 208 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999877999999999985 577778885
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=300.89 Aligned_cols=185 Identities=23% Similarity=0.368 Sum_probs=164.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
++.|+||||||||||||+|.+...|+ .|+|++||.++.... .+|+||.|+||..+++..||.||+.|+.+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999998 999999999986543 258999999999999999999999999877
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+++++|.++|+.+||.+.++ ..+.+|||||||||+
T Consensus 107 ~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~-----~lP~~LSGGEQQRva 147 (223)
T COG2884 107 IGKP----------------------------------PREIRRRVSEVLDLVGLKHKAR-----ALPSQLSGGEQQRVA 147 (223)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHhccchhhh-----cCccccCchHHHHHH
Confidence 6531 2345677899999999999887 567789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
||||++.+|++|+.||||..|||..+.+|++++.++.+ .+|+|++.||+..-+...-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999998754 46788889999999999999999999999987654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=328.87 Aligned_cols=191 Identities=25% Similarity=0.389 Sum_probs=167.4
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCC----CCcccceEEeecccc-CCCCCCCHHHHHHHHHhccC
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMG----EFVPQRTAAYISQHD-NHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~----~~~~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~~~~~ 76 (1262)
++|+||||||||||+++|+|+++|. +|+|.++|.++. ....++.+|||+|++ ..+..-||.|.+.|+.++.+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999998 899999999865 233467899999994 56677899999999988765
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++.+++++++++.+||.+.++ +.+..|||||||||+||
T Consensus 110 ~~----------------------------------~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 110 LP----------------------------------REEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIA 150 (235)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhh
Confidence 31 1234567889999999999876 67788999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
.+|+.+|++++|||||||||+..+.++++.++++.+ .++.++++++|+.+.+..+||++++|++|+++++|++.++.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999999864 445667779999999999999999999999999999877654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=324.51 Aligned_cols=206 Identities=24% Similarity=0.359 Sum_probs=180.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+..|||-||||||||+++|.++.+|+ .|+|+++|.++...+. ++.+++|+|+..++|..||-||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 46899999999999999999999998 9999999999865532 4679999999999999999999999999
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.+|.. .+|+++++.++|+.+||+...+ .++++|||||||||
T Consensus 133 v~Gv~----------------------------------~~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRV 173 (386)
T COG4175 133 VQGVP----------------------------------KAEREERALEALELVGLEGYAD-----KYPNELSGGMQQRV 173 (386)
T ss_pred ecCCC----------------------------------HHHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHH
Confidence 88752 2234567788999999999887 67789999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.+.. ++||+.+|||.+|+.++.|||.+|++|+|+..|+++++
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999888776544 45677799999999999999999999999999999998
Q ss_pred HHHHHhCCCCCCCCCChhhHHhhh
Q 000838 234 LEFFESMGFKCPQRKGVADFLQEV 257 (1262)
Q Consensus 234 ~~~~~~~g~~~p~~~~~~~~~~~~ 257 (1262)
+. .|.+..+++|...+
T Consensus 253 l~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 253 LL--------NPANDYVRDFVRNV 268 (386)
T ss_pred Hc--------CccHHHHHHHHhcC
Confidence 64 46665666666554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=313.95 Aligned_cols=189 Identities=25% Similarity=0.315 Sum_probs=163.6
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeecccc--CCCCCCCHHHHHHHHHhcc
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHD--NHIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~ 75 (1262)
.+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+.+|+||+ .+-|..||++.|.-+....
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 6899999999999999999999998 999999998876543 357899999996 5778899999998876543
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCcccccccccchhhH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
+.. +.++++.++++.+||++ .++ +++..||||||||++
T Consensus 113 ~~~------------------------------------~~~~~i~~~L~~VgL~~~~l~-----R~P~eLSGGQ~QRia 151 (252)
T COG1124 113 GLS------------------------------------KSQQRIAELLDQVGLPPSFLD-----RRPHELSGGQRQRIA 151 (252)
T ss_pred Ccc------------------------------------HHHHHHHHHHHHcCCCHHHHh-----cCchhcChhHHHHHH
Confidence 221 11223678999999976 444 788899999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++|+||||||+||+..+.+|+++|.++.+ ..+.+.++++||...+..+||||+||++|++++.++.+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999998755 45677888999999999999999999999999999999875
Q ss_pred H
Q 000838 235 E 235 (1262)
Q Consensus 235 ~ 235 (1262)
.
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 4
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=342.48 Aligned_cols=204 Identities=24% Similarity=0.287 Sum_probs=172.8
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... ...+.+|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5688998877421 012469999999999999999999999999999999999877 45899999998764
Q ss_pred cc------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 HE------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
.. ..++.+||++|+..+++.+||.||+.+..... ..+.++.++++.++++.+||.+..|..+ .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23668999999999999999999999876543 2344555667899999999998887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||+|||||+.+|++|++|||||+||+.++..+++.|+++.++ |.|||++||++. .+.+.+|++.
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~ 212 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVA 212 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999865 999999999975 4667788853
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=322.28 Aligned_cols=192 Identities=26% Similarity=0.397 Sum_probs=159.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccc---cCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH---DNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~---~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+|+|+|+++|. +|+|.++|.+......+..||||||. |+-| ..||+|.+..+..-+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~f-P~tV~d~V~~g~~~~~- 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSF-PITVKDVVLLGRYGKK- 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCC-CcCHHHHHHccCcccc-
Confidence 58999999999999999999999998 99999999988766556789999995 3344 4799999998743221
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
.++.. ...+.++.++++|+.+|+.+.+|..+| .|||||+|||-|||
T Consensus 107 -g~~~~----------------------------~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lAR 152 (254)
T COG1121 107 -GWFRR----------------------------LNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLAR 152 (254)
T ss_pred -ccccc----------------------------ccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHH
Confidence 01100 011224568899999999999986555 69999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||+++|++|+|||||+|+|+.++..+.++|+++.++ +.+|+++|||...+.++||+|+.|+ +++++.|+++++.
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999999999999999998653 5667789999999999999999885 4677899988764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=307.38 Aligned_cols=192 Identities=28% Similarity=0.352 Sum_probs=169.1
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEecCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE----TFARISGYCEQNDIHSP 791 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 791 (1262)
+++.+++|||+.+++||++|++|||||||||.+.++.|... +.+|+|.+||.+++.. ..+.-+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 46789999999999999999999999999999999999887 4589999999987642 23446899999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCC
Q 000838 792 FVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871 (1262)
Q Consensus 792 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 871 (1262)
.+||+||+......+.. +....+++.+++++|+.+++.|.++++. ..||||||||+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999887766542 2233456667889999999999999874 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 872 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 872 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
++|+||.+..+|+++++.++++|..|++|-|+.+ |.....|+++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaY 210 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAY 210 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEE
Confidence 9999999999999999999999999999999986 6788889863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=349.60 Aligned_cols=191 Identities=25% Similarity=0.352 Sum_probs=165.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.... .++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999998 999999999886543 2468999999999999999999999986533210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..+ +++++|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ---------------------------------KAEIEERVAEAARILELEPLLD-----RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHH
Confidence 1112345778999999988776 56678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++++||||||+||+.++.++.+.|+++.+. .+++++++||+..++..+||+|++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999999999987543 3566777999999999999999999999999999998874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=345.63 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=173.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 367888887762 12469999999999999999999999999999999999876 4689999999876
Q ss_pred Cc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.+||.+..+..+ .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223478999999999999999999999986543 2344555677899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++.+..|++
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i 205 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRV 205 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999775 999999999984 678888985
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=324.57 Aligned_cols=201 Identities=23% Similarity=0.299 Sum_probs=167.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 467888877631 12469999999999999999999999999999999999876 45899999998753
Q ss_pred c------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ..+++.++|++|++.+++.+||.||+.+....+. ...++.+++++++++.+|+.+..++.+ .+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999998754321 223344556889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+...+|+.
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i 208 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRT 208 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEE
Confidence 99999999999999999999999999999999999999999999777999999999975 455566764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=342.80 Aligned_cols=200 Identities=25% Similarity=0.385 Sum_probs=174.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578899988773 3468999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KHE-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
... ..++.+|||+|+..++|.+||.||+.|+...+. .+..+.+++++++++.++|.+..++. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 235789999999999999999999999865432 34455667799999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++++..|++
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i 207 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTV 207 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999765 899999999985 677888985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=346.55 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=165.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++..... ++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~- 109 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP- 109 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC-
Confidence 47999999999999999999999998 9999999998865433 478999999999999999999999987543210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||.+..+ ++++.|||||||||+|||||
T Consensus 110 ---------------------------------~~~~~~~v~~~l~~~gl~~~~~-----r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 110 ---------------------------------KEERKQRVKEALELVDLAGFED-----RYVDQISGGQQQRVALARAL 151 (351)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHH
Confidence 1122345788999999988766 56678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|+++||||||||||+.++.++.+.|+++.+. .+++++++||+..++..++|+|++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999987543 3456777999999999999999999999999999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=347.62 Aligned_cols=192 Identities=22% Similarity=0.354 Sum_probs=166.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .+|.++||+|+..+||.+||+||+.|+.+.++..
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999998 999999999886533 2468999999999999999999999986533210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..| +.+++|||||||||+|||||
T Consensus 108 ---------------------------------~~~~~~~~~~~l~~l~L~~~~~-----~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 ---------------------------------RAEVAERVAELLDLVGLPGSER-----KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCCchhh-----CChhhCCHHHHHHHHHHHHH
Confidence 1122345788999999998776 56678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
+.+|+++|||||||+||+.++.++.+.|+++.+. .+++++++||+..++..++|+|++|++|+++..|+++++.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999987543 34567779999999999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.13 Aligned_cols=200 Identities=27% Similarity=0.345 Sum_probs=167.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4678877763 2469999999999999999999999999999999999876 458999999987532
Q ss_pred ------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 774 ------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 774 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
..+++.++|++|++.+++.+||.||+.+...... ..+.++.+++++++++.+++.+..++.+ .+|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 1233444566888999999987776654 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|+++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~ 208 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIA 208 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEE
Confidence 9999999999999999999999999999999999999999999864 899999999975 4666778753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=347.55 Aligned_cols=192 Identities=21% Similarity=0.341 Sum_probs=165.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCcee--EEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVS--GRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~--G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+|||||||||||++|+|+.+|+ + |+|.++|.++..... ++.++||+|++.++|.+||+||+.|+.+.++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999998 8 999999998864332 46799999999999999999999998754321
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
. ..+.+++++++++.+||++..| +.+++|||||||||+|||
T Consensus 110 ~----------------------------------~~~~~~~v~~~l~~~gL~~~~~-----~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P----------------------------------KADIAERVADALKLVGLGDAAA-----HLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred C----------------------------------HHHHHHHHHHHHHhcCCCchhh-----CChhhCCHHHHHHHHHHH
Confidence 0 0112345788999999998776 556789999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||+.+|++++|||||||||+.++.++.+.|+++.+..++++++++||+.+++..++|+|++|++|+++..|+++++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998754322566778999999999999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=343.32 Aligned_cols=200 Identities=26% Similarity=0.366 Sum_probs=174.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 477889988763 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ...+|.+|||+|+..++|.+||.||+.|+...+ ..+..+.+++++++++.++|.+..+.. +.+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 224578999999999999999999999986543 234455667799999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+.+|++||||||+++||+.++..+.+.|+++.++ |.|+|++|||+. +++...|++
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i 205 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRI 205 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999998765 899999999985 678888985
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=343.31 Aligned_cols=191 Identities=21% Similarity=0.322 Sum_probs=164.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++..||+||+.++...
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999998 999999999886542 245799999999999999999999997653
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+.++++.++++.+||++..| +++..|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~-----~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP----------------------------------KDEIKRKVTELLALVGLGDKHD-----SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHH
Confidence 3210 0112345778899999998776 556789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++|+|||||||||+.++..+++.|+++.+.. +.+|+++||+.+.+.+.||+|++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999876533 456777999999999999999999999999999988764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.00 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=174.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeE--EEEEECCc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GSIKISGY 769 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 769 (1262)
.+.++|+++++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 577889988773 24699999999999999999999999999999999998763 47 99999998
Q ss_pred cCCc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 770 PKKH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 770 ~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
+... ...++.+||++|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223577999999999999999999999986543 2344556667999999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++....|+++
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~ 210 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAG 210 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 5778888853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=343.91 Aligned_cols=192 Identities=20% Similarity=0.318 Sum_probs=165.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.++|.+||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999998 9999999999875432 4689999999999999999999999865
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
+.+.. .++.++++.++++.+||++..+ +++..|||||||||
T Consensus 98 ~~~~~----------------------------------~~~~~~~~~~~l~~vgL~~~~~-----~~p~~LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWP----------------------------------EQERKEKALELLKLVGLEEYEH-----RYPDELSGGMQQRV 138 (363)
T ss_pred HcCCC----------------------------------HHHHHHHHHHHHHhcCCchhhh-----CChhhCCHHHHHHH
Confidence 43210 0112345778899999987766 55668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|+|+||||||+|||+.++.++.+.++++.+. .+.+|++++|+.+++.++||+|++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999887543 345677799999999999999999999999999998887
Q ss_pred HH
Q 000838 234 LE 235 (1262)
Q Consensus 234 ~~ 235 (1262)
..
T Consensus 218 ~~ 219 (363)
T TIGR01186 218 LR 219 (363)
T ss_pred Hh
Confidence 53
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=337.72 Aligned_cols=202 Identities=25% Similarity=0.350 Sum_probs=173.7
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++..+. ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 4688999998773 3569999999999999999999999999999999999877 458999999987
Q ss_pred CCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
... ...++.+||++|++.+++.+|+.||+.+.+..+. .+..+.+++++++++.++|.+..++.+ ++||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 642 2346789999999999999999999987665442 233334456788999999998888775 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++.
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~ 243 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC 243 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999877999999999975 6777888853
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.45 Aligned_cols=202 Identities=27% Similarity=0.316 Sum_probs=165.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+..+|++..++... ....+|+||||++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 467888888775322 11269999999999999999999999999999999999877 4589999999775
Q ss_pred Ccc----cccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCC
Q 000838 772 KHE----TFARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVNG 844 (1262)
Q Consensus 772 ~~~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 844 (1262)
... .+.+.+.+|+||+. +.|..||++.|.-+.... ..++ .++++.++++.+||.+.. +.. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 46788999999974 678999999987665432 2222 233389999999998643 333 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||||++|||||+.+|++|++|||||+||+..+.+|++.|.++.++ |.|.|++|||.+ -+..++|++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi 212 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRI 212 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhhe
Confidence 9999999999999999999999999999999999999999999999865 889999999976 355667764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=346.61 Aligned_cols=191 Identities=26% Similarity=0.350 Sum_probs=164.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++..... ++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999998 9999999998865432 467999999999999999999999986533210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..+ +++.+|||||||||+|||||
T Consensus 118 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 ---------------------------------AAEITPRVMEALRMVQLEEFAQ-----RKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0112345678899999998776 55678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|+++||||||||||+.++.++.+.|+++.+.. +++++.+||+..++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876533 456677999999999999999999999999999998874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=292.20 Aligned_cols=183 Identities=27% Similarity=0.344 Sum_probs=158.1
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEecCCCCCCCCCCHHHHHH
Q 000838 722 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVTVHESLA 800 (1262)
Q Consensus 722 ~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~ 800 (1262)
=..++.|++||++||+||||||||||||.|+|... +.+|+|++||.+... ....|-++.++|+.++|..+||.+|+.
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 35778999999999999999999999999999877 458999999998654 345677899999999999999999998
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHH
Q 000838 801 FSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880 (1262)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~ 880 (1262)
++..-.+ ..+ .+.++.++.++..+||..+.+++. .+|||||||||++||+|+++-+||+||||+|.|||.-+
T Consensus 94 LGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 94 LGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (231)
T ss_pred ccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence 8643221 122 345566999999999999998874 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 881 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 881 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.++...+.+++++ +.|++++||+|+ +.....|+.
T Consensus 166 ~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~ 200 (231)
T COG3840 166 AEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRV 200 (231)
T ss_pred HHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhce
Confidence 9999999999865 899999999996 566666764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=320.20 Aligned_cols=198 Identities=29% Similarity=0.395 Sum_probs=165.1
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677777663 2469999999999999999999999999999999999876 458999999987642
Q ss_pred -ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 -ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 -~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
...++.++|++|++.+++.+|++||+.+..... ....+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223467999999998888999999998764332 1223344556889999999988777654 4799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v 201 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRI 201 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEE
Confidence 99999999999999999999999999999999999998764 899999999975 455667764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=320.90 Aligned_cols=201 Identities=29% Similarity=0.397 Sum_probs=165.1
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++.. +..+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 467887766310 011569999999999999999999999999999999999876 458999999987532
Q ss_pred c-------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 774 E-------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 774 ~-------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ..++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 1 124579999999999999999999998754432 222334456889999999987776653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++.. + +.+|++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v 210 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRI 210 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEE
Confidence 9999999999999999999999999999999999999999999987 58999999999863 3 366764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=340.07 Aligned_cols=200 Identities=24% Similarity=0.331 Sum_probs=174.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 578899988773 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ...++.+||++|+..++|.+||.||+.|+...+ ..+..+.+++++++++.++|.+..++.+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999986543 2344455667899999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+. +++...|++
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri 215 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRI 215 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999865 999999999975 678888985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=317.76 Aligned_cols=197 Identities=25% Similarity=0.380 Sum_probs=165.9
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4677777652 2469999999999999999999999999999999999876 458999999987643
Q ss_pred ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000838 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRL 853 (1262)
Q Consensus 774 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 853 (1262)
..++.++|++|++.+++.+|+.||+.+....+. ......++.++++++.+++.+..++.+ .+||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345679999999999999999999988654432 223344556889999999987776653 47999999999
Q ss_pred HHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 854 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 854 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i 198 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRV 198 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEE
Confidence 9999999999999999999999999999999999998877899999999975 455567764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=338.97 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=172.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66788887763 3469999999999999999999999999999999999876 45899999998764
Q ss_pred c-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ...++.++|++|++.++|.+||.||+.|....+.. ...+.++.+++++++++.++|.+..++.+ .+||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 3 22346799999999999999999999997653211 12344555667899999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++....|+++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~ 208 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVV 208 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999876 899999999985 6777888853
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=318.85 Aligned_cols=201 Identities=27% Similarity=0.385 Sum_probs=165.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-
Confidence 467777766310 011569999999999999999999999999999999999876 45899999998764
Q ss_pred ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000838 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRL 853 (1262)
Q Consensus 774 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 853 (1262)
..++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.+++.+..++.+ ..||||||||+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 235679999999998888999999988654332 223344556889999999987776653 47999999999
Q ss_pred HHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc
Q 000838 854 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 854 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.+|+.+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 203 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVV 203 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999865 4899999999975 4556677643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=338.28 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=174.1
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~ 82 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVD 82 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 3588999988763 2468999999999999999999999999999999999876 458999999987
Q ss_pred CCc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 771 KKH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 771 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
... ...++.+||++|+..++|.+||.||+.|+...+ ..+..+.+++++++++.++|.+..+.. +.+|||||
T Consensus 83 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq 154 (377)
T PRK11607 83 LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQ 154 (377)
T ss_pred CCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHH
Confidence 643 234678999999999999999999999976543 224455667789999999999887776 45799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. +++...|+.
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri 220 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRI 220 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEE
Confidence 99999999999999999999999999999999999999998764 899999999975 678888985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=318.81 Aligned_cols=198 Identities=28% Similarity=0.350 Sum_probs=166.5
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4677877663 3469999999999999999999999999999999999876 458999999976532
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2345679999999999999999999988754432 223334556889999999988777664 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|++||+|++.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+..|++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i 202 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRV 202 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999876 899999999975 455667774
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=317.78 Aligned_cols=200 Identities=26% Similarity=0.314 Sum_probs=166.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 45778887662 12469999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 HE------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..+++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 245679999999999989999999988754321 223334556889999999987666653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i 207 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRV 207 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEE
Confidence 99999999999999999999999999999999999999999998777999999999975 455567764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=311.38 Aligned_cols=186 Identities=26% Similarity=0.408 Sum_probs=164.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-------ccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+|||-|+||||||||+|+|+|+..|+ +|.|.+||+.+.+.. .+|.+|||+||-.+||.+||+.||.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999999 999999998764321 25789999999999999999999999763
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.. .....+++.+.||++|..+ +++..|||||||||
T Consensus 103 ~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P~~LSGGEkQRV 137 (352)
T COG4148 103 KS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYPGTLSGGEKQRV 137 (352)
T ss_pred cc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCCCccCcchhhHH
Confidence 21 0112467889999999887 77889999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|+|||++.|++|+||||.+.||-.-..+++-.|+++.++ -+.-|+.++|..+|+.+++|+|++|++|+|...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 9999999999999999999999999999999999988653 456788899999999999999999999999999999987
Q ss_pred HH
Q 000838 234 LE 235 (1262)
Q Consensus 234 ~~ 235 (1262)
.+
T Consensus 217 ~~ 218 (352)
T COG4148 217 WG 218 (352)
T ss_pred hc
Confidence 53
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=283.28 Aligned_cols=189 Identities=27% Similarity=0.389 Sum_probs=163.8
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEecCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-------ETFARISGYCEQNDI 788 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 788 (1262)
+...||++|++.|++||-+||+|||||||||||-+++|... +.+|+|.+.|++... .-+.+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45789999999999999999999999999999999999877 458999999988532 124578999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 789 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+.|+||..||+.....++.... .+.++...+.++.+||.+..+.+ +.+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999999888875322 22344577899999999888776 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||-+||..+...|.+++-.+.++ |.|.|++||||. +...+|+.+
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~ 217 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQL 217 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhhee
Confidence 9999999999999999999888654 999999999986 666777654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=342.38 Aligned_cols=191 Identities=20% Similarity=0.289 Sum_probs=164.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|++.+||.+||.||+.|+.+.++..
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999998 999999999886433 3568999999999999999999999986533210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||.+..+ +++.+|||||||||+|||||
T Consensus 123 ---------------------------------~~~~~~~v~~~l~~l~L~~~~~-----~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 ---------------------------------KAEIASRVNEMLGLVHMQEFAK-----RKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHH
Confidence 0122345778899999988766 56678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++||||||||+||+.++.++.+.|+++.+.. +.+++.+||+..++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999998876533 466777999999999999999999999999999998874
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=332.16 Aligned_cols=201 Identities=26% Similarity=0.344 Sum_probs=170.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477889988763 3469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 772 KH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
.. ...++.+||++|++.+++.+|+.||+.+....+. .+..+.+++++++++.+++.+..++.+ .+|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2345679999999999999999999987554321 233334456788999999988777764 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+++
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~ 206 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLC 206 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999877999999999985 5667788753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=334.87 Aligned_cols=188 Identities=28% Similarity=0.394 Sum_probs=163.0
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEecCCCCCCCCCC
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH--ETFARISGYCEQNDIHSPFVT 794 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 794 (1262)
++.+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3579999999999999999999999999999999999876 458999999987642 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCC
Q 000838 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874 (1262)
Q Consensus 795 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 874 (1262)
|+||+.+.+.++. .+..+.+++++++++.++|.+..++.+ +.||||||||++||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 233344556889999999988877764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 875 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 875 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||+.++..+++.|++++++|+|||++||++. ++.+.+|++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v 194 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRI 194 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEE
Confidence 9999999999999999877999999999975 566778875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=309.41 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=172.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCccc----ceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ----RTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++....+ ..++--+|...+|++|||-||+..++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 47999999999999999999999999 99999999999876543 467888999999999999999999876442
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
. +... ... .....+..+..+++.++|+.+||.+.+|...| +||+|||||+.||
T Consensus 109 ~---~~~~---------l~~----------~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LSGL---------LGR----------PRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIA 161 (250)
T ss_pred h---hhhh---------hcc----------ccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHH
Confidence 1 0000 000 00011223455678899999999999997776 4999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|||+.+|++|+||||.+||.+....++.+.|+++.+ +++.+|++|.|++..+..+||||+||+.|+++.+|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999754 456788889999999999999999999999999999998853
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=289.32 Aligned_cols=191 Identities=23% Similarity=0.368 Sum_probs=164.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
.++++||||||||||||+++|+.+|. .|+|.+||++++.-.. .-|.|+|++.++|.+|+.||+.|+.+++|..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k- 106 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK- 106 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCCCH-
Confidence 37899999999999999999999998 9999999998864322 34899999999999999999999999987632
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
.++.+++.+.+..+||++..+ +++-+|||||||||.|||||.
T Consensus 107 ---------------------------------~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 107 ---------------------------------AQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALA 148 (259)
T ss_pred ---------------------------------HHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhh
Confidence 123456778899999998765 677889999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEec--CCeEEEecCcchHHHH
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLS--DGQIVYQGPRELVLEF 236 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~~~~~~ 236 (1262)
.+|+.|+||||+++||.-+++++.++|.++.+..++ -++.+||+.+|+.-++++++||+ .|+|+..=+++-...|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999999999999887665544 55669999999999999999997 6899987777654444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=316.24 Aligned_cols=198 Identities=26% Similarity=0.372 Sum_probs=165.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677877663 2469999999999999999999999999999999999876 458999999987642
Q ss_pred c-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 E-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
. ..++.++|++|++.+++..|++||+.+....+ ....++.+++++++++.+|+.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 22457999999998888999999998865432 1233444556888999999987777664 4799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i 201 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRI 201 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeE
Confidence 99999999999999999999999999999999999999864 899999999974 455666764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=317.06 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=165.2
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777663 12469999999999999999999999999999999999876 458999999987532
Q ss_pred ------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 774 ------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 774 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
...++.++|++|++.+++.+|+.||+.+....+. ...++.+++++++++.+|+.+..++.+ .+|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999988754332 233344556889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+.
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i 206 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRV 206 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999777999999999974 444556764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=316.44 Aligned_cols=202 Identities=25% Similarity=0.338 Sum_probs=174.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++|.++. .+.+|+|+|+++++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3568899988742 1479999999999999999999999999999999999887 4579999999885
Q ss_pred C----cccccceEEEecCCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 772 K----HETFARISGYCEQNDIH-SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 772 ~----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ....++.+|||+|++.. +-.-||.|.+.|+..- ...+.++.+++++++++.+|+.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 34578899999999854 3457999999998643 2445667888899999999999998776 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.. .+.+..|+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~ 210 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVV 210 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999877 799999999974 4666677754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=340.08 Aligned_cols=195 Identities=26% Similarity=0.386 Sum_probs=164.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.++|.+||+||+.|+........
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999998 9999999998864332 4679999999999999999999999764321000
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
. ....+.+++++++++.+||++..| +++..|||||||||+|||||
T Consensus 107 ~------------------------------~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 107 R------------------------------PNAAAIKAKVTQLLEMVQLAHLAD-----RYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred C------------------------------CCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHH
Confidence 0 001122345778899999988766 55678999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|+++||||||+|||+.++.++.+.|+++.+ +.+.+++++||+..++..+||+|++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999998754 33456777999999999999999999999999999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=317.66 Aligned_cols=203 Identities=26% Similarity=0.384 Sum_probs=168.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... .....+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4578888776311 011269999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ..+++.++|++|++.+++.+|+.||+.+....+. ...++..+.++++++.+|+.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 2 2345679999999999999999999987654331 233444566889999999988777654 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+..|+.
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i 206 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRV 206 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEE
Confidence 9999999999999999999999999999999999999999777999999999975 456667764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.49 Aligned_cols=200 Identities=26% Similarity=0.367 Sum_probs=171.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887763 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ...++.+||++|+..+++.+||.||+.|....+. .+.++.+++++++++.+||.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 2234679999999999999999999998765432 233445567899999999988777764 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++....|++
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i 204 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKI 204 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999998765 899999999985 577788874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=297.99 Aligned_cols=193 Identities=20% Similarity=0.339 Sum_probs=167.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCccc----ceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ----RTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++...+. ..+||+||++..|..+||+|||+-..+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47999999999999999999999999 99999999999876543 468999999999999999999998776542
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. ....+.+.+.+.+|+.|+|.|.++. ...+||||||||+.||
T Consensus 109 ~d--------------------------------~~~~~~~~~l~~LL~ef~i~hlr~~-----~a~sLSGGERRR~EIA 151 (243)
T COG1137 109 KD--------------------------------LKKAERKEELDALLEEFHITHLRDS-----KAYSLSGGERRRVEIA 151 (243)
T ss_pred cc--------------------------------hhHHHHHHHHHHHHHHhchHHHhcC-----cccccccchHHHHHHH
Confidence 10 0011234457889999999999984 3457999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|||+.+|+.++||||++|+||.+..+|.+.++.+.. ++.-|+++-|+..|....|||.+++++|++..+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999998743 35667778999999999999999999999999999998753
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=334.28 Aligned_cols=191 Identities=27% Similarity=0.379 Sum_probs=163.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc--ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|.+.+++..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999998 999999999875432 3467999999999999999999999866543210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+.+++++++++.++|.+.+++.+ ++||||||||++||+|
T Consensus 112 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 152 (306)
T PRK13537 112 ----------------------------------AAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARA 152 (306)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHH
Confidence 0112234677899999998887554 5799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++.++++.|+++.+ . +++|++++|+.+++.++||||++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998743 3 4667779999999999999999999999999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=335.61 Aligned_cols=189 Identities=24% Similarity=0.276 Sum_probs=164.7
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---cc----cceEEEecCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE---TF----ARISGYCEQNDI 788 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~ 788 (1262)
+.+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .. ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34669999999999999999999999999999999999887 4689999999886431 22 578999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 789 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
++|.+||+||+.|..... ..+.++.++++.++++.+||.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2344556677899999999988877764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++||+.++..+++.++++.++ |+|||++|||.. ++....|++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI 200 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRI 200 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999754 899999999975 467778885
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=289.12 Aligned_cols=184 Identities=28% Similarity=0.406 Sum_probs=162.9
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHH
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHE 797 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 797 (1262)
..+|+|+|+++.+||.++++||||||||||||+++|..+ +..|+|.+||.+++... ...|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 458999999999999999999999999999999999887 45899999999876432 23488999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCH
Q 000838 798 SLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877 (1262)
Q Consensus 798 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 877 (1262)
|+.|+.+++. .++.++.+.+.+.+..+||.+..++.+ -+||||||||+.|||||+.+|++|+||||.+.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998874 567788888999999999999887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhh
Q 000838 878 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 878 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
-++++++++|-++.+ .|+.++++||+....+| +-++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf-latr 202 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALF-LATR 202 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh-hhhe
Confidence 999999999999875 49999999999765544 3344
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=315.86 Aligned_cols=183 Identities=29% Similarity=0.372 Sum_probs=154.3
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCC-CCCCCCHH
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDI-HSPFVTVH 796 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~lTv~ 796 (1262)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.++|++|++. .+..+|+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999876 458999999987644445567999999974 33467999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCC
Q 000838 797 ESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876 (1262)
Q Consensus 797 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 876 (1262)
||+.+..... . . .+++++++++.+|+.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D-A---GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C-c---cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1234788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 877 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 877 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+.++..+.+.|++++++|+|||++||++. ++.+..|+.
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i 196 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRV 196 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEE
Confidence 99999999999999777999999999975 355567764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=319.59 Aligned_cols=203 Identities=28% Similarity=0.383 Sum_probs=167.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67888888763 2469999999999999999999999999999999999876 45899999998754
Q ss_pred cc-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 HE-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ..++.++|++|++.+++.+||.||+.+....+.. ......+.++.++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 21 2245799999999998899999999886543211 00122334456788999999987776653 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|+++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~ 208 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVV 208 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999865 899999999975 4566778753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=316.63 Aligned_cols=210 Identities=36% Similarity=0.589 Sum_probs=171.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEECCccC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSIKISGYPK 771 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 771 (1262)
+.|+|+++.+.... ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45788887764210 135799999999999999999999999999999999997651 13589999999876
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.....++.++|++|++.+++.+|+.||+.+..................+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544556789999999999999999999998755432221122222233555 88889988776654 357999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|+.+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999887789999999998777888999853
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=335.15 Aligned_cols=204 Identities=24% Similarity=0.276 Sum_probs=170.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++++++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888877411 013579999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 HE------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
.. ..++.+||++|++.+++.+||.||+.+....+. .+.++.+++++++++.+||.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 21 235679999999999999999999998754432 233445566889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~ 212 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVA 212 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5666788753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.32 Aligned_cols=202 Identities=28% Similarity=0.342 Sum_probs=166.0
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4567776653 2469999999999999999999999999999999999876 458999999987543
Q ss_pred c---c-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 774 E---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPE-------VDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 774 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
. . .++.++|++|++.+++.+||+||+.+....+.... ......++.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 23568999999999999999999988654321110 012334456889999999987776653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+++
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~ 214 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVT 214 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999877999999999985 4566778753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.13 Aligned_cols=194 Identities=29% Similarity=0.387 Sum_probs=163.0
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4677777663 2469999999999999999999999999999999999876 458999999987532
Q ss_pred -ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 -ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 -~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
...++.++|++|++.+++.+|+.||+.+....+. . .+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999999999999999999988654321 1 1234788999999988777654 4799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
++||+|++.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+..|++
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v 196 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRI 196 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEE
Confidence 99999999999999999999999999999999999998877899999999975 344556664
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=314.64 Aligned_cols=199 Identities=24% Similarity=0.324 Sum_probs=165.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4677877663 2469999999999999999999999999999999999876 458999999987531
Q ss_pred -----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 774 -----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 774 -----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
...++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+|+.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345779999999999999999999987642111 1223344556888999999987766653 579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+.
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i 205 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRV 205 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999877899999999975 455667764
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=318.50 Aligned_cols=199 Identities=27% Similarity=0.352 Sum_probs=166.1
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677777663 3469999999999999999999999999999999999876 458999999987532
Q ss_pred c---c-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 774 E---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 774 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
. . .++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23568999999999999999999987643321 223334456788999999987776653 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+..|+++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 204 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAY 204 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999877999999999975 5677778753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=339.97 Aligned_cols=191 Identities=24% Similarity=0.355 Sum_probs=162.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|+...++..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999998 999999999876432 2467999999999999999999999976533210
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..+ +.+.+|||||||||+|||||
T Consensus 107 ---------------------------------~~~~~~~~~~~l~~lgL~~~~~-----~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 ---------------------------------KEEINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHH
Confidence 0112345678899999988776 45568999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|+++||||||+|||+.++..+.+.|+++.+.. +++++++||+.+++..+||+|++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999875432 456777899999999999999999999999999988774
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=333.12 Aligned_cols=191 Identities=25% Similarity=0.348 Sum_probs=162.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+||++|++.+++.+||+||+.+.+.+++..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999998 99999999887542 12457999999999999999999999876543210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+.+++++++++.+||++..++. ++.|||||||||+||+|
T Consensus 98 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 ----------------------------------KDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAAS 138 (302)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHH
Confidence 001123467889999998877744 45799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++..+++.|+++.+ + +++|++++|+.+++.+.||++++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999998753 3 4567779999999999999999999999999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=336.86 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=170.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 467889988763 3579999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.+||++|++.+++.+||+|++.++...+.. .....+..+++++++++.+|+.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567899999999998999999999875422110 01012234456899999999998887764 57999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|+++ ++.+.+|+.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adri 209 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDEL 209 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999877999999999975 566778885
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=316.18 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=166.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+... ...+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47789998877421 012469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cc-cceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000838 772 KHE------TF-ARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 772 ~~~------~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 844 (1262)
... .. ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 421 12 256999999998899999999998865432 122334456688999999998776665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++.. .+.+|+.
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~--~~~~~~~ 215 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL--AKRMSRQ 215 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhhCEE
Confidence 999999999999999999999999999999999999999999999875 58999999999753 3345653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=327.91 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=170.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++.++. ++.+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887763 3569999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ...++.+||++|++.+++.+|+.||+.+.+.++. ...++.+++++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998765542 223344556889999999998887764 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+..|++
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i 202 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRV 202 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999864 799999999985 577788885
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=321.06 Aligned_cols=191 Identities=27% Similarity=0.359 Sum_probs=158.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999998 999999998875432 245799999999899999999999986532
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
... . ..++..++++++++.+||.+..+ +.+..|||||||||+
T Consensus 105 ~~~-~--------------------------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ 146 (235)
T cd03261 105 HTR-L--------------------------------SEEEIREIVLEKLEAVGLRGAED-----LYPAELSGGMKKRVA 146 (235)
T ss_pred ccC-C--------------------------------CHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHH
Confidence 100 0 00011234677899999987666 445679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||++++|++|++++.|+++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999987542 245677789999999999999999999999999987765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=313.62 Aligned_cols=187 Identities=28% Similarity=0.372 Sum_probs=156.0
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEecCCCC-CCCCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDI-HSPFV 793 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 793 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999876 458999999987532 234567999999974 36678
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCC
Q 000838 794 TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873 (1262)
Q Consensus 794 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 873 (1262)
|+.||+.+....+ .......++.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456788999999987666653 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 874 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 874 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+.++..+.+.|++++++|+|||++||++. ++...+|+.
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i 204 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRV 204 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 99999999999999999877999999999975 455556764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=296.43 Aligned_cols=189 Identities=22% Similarity=0.352 Sum_probs=172.5
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCH
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
+++.+++|+||.++||+++|++|||||||||.+++|.|... +++|+|.++|.+.+. ..+.+|||.|.+--++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhh-hhhhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999987 468999999998764 345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCC
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 875 (1262)
.|.|.|.+.++. ++.++.+..++.+|+.+++......++ ..||.|++|++.+-.+++++|++++||||+|||
T Consensus 90 ~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 999999998874 566777888999999999998887764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 876 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 876 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||.+.+.+.+.+.+++++|.|||+++|+.. .+.+++|+.+
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~ll 201 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLL 201 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhh
Confidence 999999999999999999999999999975 6888999853
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=317.42 Aligned_cols=204 Identities=25% Similarity=0.293 Sum_probs=167.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4577887766310 001369999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 HE------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 21 235679999999999999999999988654332 233344556889999999987777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|+.+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~ 212 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVA 212 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 4566778753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=318.13 Aligned_cols=197 Identities=27% Similarity=0.364 Sum_probs=165.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 46788887663 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 773 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
. ..+.++|++|++.+++.+||.||+.+....+. ....+.+++++++++.+|+.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 2 23458999999998888999999987644321 23334455688999999998776665 35799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++...+|+.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i 199 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATEL 199 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999854 5899999999985 556677774
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=313.28 Aligned_cols=202 Identities=24% Similarity=0.312 Sum_probs=164.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4577888776311 012469999999999999999999999999999999999876 45899999998753
Q ss_pred cc---c---cc-ceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000838 773 HE---T---FA-RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 773 ~~---~---~~-~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 845 (1262)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 579999999988889999999988654321 222333456788999999987766653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v 211 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRV 211 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEE
Confidence 999999999999999999999999999999999999999999999764 899999999985 33 445664
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=312.82 Aligned_cols=200 Identities=25% Similarity=0.295 Sum_probs=165.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 45788887762 12469999999999999999999999999999999999876 45899999998653
Q ss_pred c---c---cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H---E---TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~---~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. . .+++.++|++|++.+++.+|+.||+.+....+ ..+.++.++.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 24567999999998888899999998865432 123334445678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|+|++||+++ ++.+..|+.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i 207 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRM 207 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEE
Confidence 99999999999999999999999999999999999999999999777899999999975 344556664
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=314.54 Aligned_cols=188 Identities=27% Similarity=0.410 Sum_probs=154.6
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCC--CCCCH
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHS--PFVTV 795 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~lTv 795 (1262)
+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. ..+|+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 45899999998653 3456799999998763 33899
Q ss_pred HHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCC
Q 000838 796 HESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874 (1262)
Q Consensus 796 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 874 (1262)
.||+.+....... .....+..+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875422110 00111233456889999999987766653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 875 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 875 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||+.++..+.+.|++++++|+|||++||++. ++.+..|+.
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i 202 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRV 202 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 9999999999999999877899999999975 455666764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=306.48 Aligned_cols=179 Identities=27% Similarity=0.347 Sum_probs=150.8
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEecCCCC-CC
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-----ETFARISGYCEQNDI-HS 790 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 790 (1262)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999876 458999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeC
Q 000838 791 PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 870 (1262)
Q Consensus 791 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 870 (1262)
...|+.||+.+..... ..+.++.++.++++++.+|+.+..++.+ ..||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1233344456889999999988777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 871 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 871 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=361.98 Aligned_cols=201 Identities=23% Similarity=0.350 Sum_probs=172.6
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++..++. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 47889999887731 23579999999999999999999999999999999999876 458999999988
Q ss_pred CCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. ...++.+++++++++.+||.+..++.+ ++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2346779999999999999999999999876653 223344566899999999998887764 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
||||++||+||+.+|+|++|||||+|||+.+++.+++.|++++ +|+|||++||++. ++....|+
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999985 5999999999975 45556776
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=316.20 Aligned_cols=200 Identities=23% Similarity=0.253 Sum_probs=163.6
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC-----CCCeeEEEEEECC
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGSIKISG 768 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~-----~~~~~~G~i~~~g 768 (1262)
.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4677777653 246999999999999999999999999999999999987 4 4689999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ..+++.++|++|++.++ .+||+||+.+....+.. ...++.+++++++++.+|+.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998887 79999999886543311 1222234568889999999876655420 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. ++.+.+|+++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~ 211 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTA 211 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEE
Confidence 79999999999999999999999999999999999999999999999876 99999999975 4566778753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=319.44 Aligned_cols=203 Identities=27% Similarity=0.282 Sum_probs=163.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 46777766531 1469999999999999999999999999999999999876 458999999987542
Q ss_pred ------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 774 ------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLR-----LAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 774 ------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
...++.++|++|++.+++.+||.||+.+..... ..........+++++++++.+++.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 124567999999999999999999998753210 000111123345678899999998776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++....|+++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~ 216 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIV 216 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999764 899999999986 4566777753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=309.93 Aligned_cols=185 Identities=24% Similarity=0.385 Sum_probs=156.9
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC---c----ccccceEEEecCCCCCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK---H----ETFARISGYCEQNDIHS 790 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~~ 790 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 45899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeC
Q 000838 791 PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 870 (1262)
Q Consensus 791 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 870 (1262)
+.+|++||+.+....+ ........+.++++++.+|+.+..++.+ .+||||||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 1233344556889999999987777654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 871 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 871 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
||+|||+.++..+.+.|+++.++|.|+|++||++. +.+..|+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~ 202 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADR 202 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCE
Confidence 99999999999999999998877999999999985 3345554
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=313.19 Aligned_cols=200 Identities=26% Similarity=0.392 Sum_probs=165.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46777776631 11469999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
..+++.++|++|++.+++.+|++||+.+....+. ......++.++++++.++|.+..++.+ ..||+||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345679999999999889999999988654432 223334456889999999987776653 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~ 203 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIA 203 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEE
Confidence 99999999999999999999999999999999999999875 699999999986 4555677753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=315.85 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=166.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 45778887663 2469999999999999999999999999999999999876 45899999998754
Q ss_pred c-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 773 H-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 773 ~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
. ...++.++|++|++.+++.+||.||+.+..... ......+.++.+.++++.+|+.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 234567999999999999999999998754211 11233444556889999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i 206 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRL 206 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999877999999999975 455667774
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=297.19 Aligned_cols=190 Identities=22% Similarity=0.352 Sum_probs=157.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc----cceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||+||||||++|+|..++. +|+|.++|+|++.... ++.++||||....||.+||+|||..++..+.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999987 9999999999986644 3679999999999999999999998865432
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhC-CcccccccccCCcccccccccchhhHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLG-LDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
... ..+...+++.+.|= |.+.++.+.| +|||||||.++|
T Consensus 108 ~~~-----------------------------------~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAi 147 (237)
T COG0410 108 DKE-----------------------------------AQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAI 147 (237)
T ss_pred ccc-----------------------------------cccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHH
Confidence 100 00001233344432 4444554444 699999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||||+++|++|+|||||.||-|.-..+|++.++++.+. ++.+|+.+.|+...+.+.+||.+||.+|++++.|+.+++.
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998653 4578888999999999999999999999999999998875
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=333.38 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=161.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999998 999999999876432 145799999999999999999999987643
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+.+++++++++.+||++..+ +.+++|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP----------------------------------KAEIKARVTELLELVGLSDKAD-----RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHH
Confidence 3210 0012234677899999988776 445679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999987543 3456777899999999999999999999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=317.47 Aligned_cols=200 Identities=27% Similarity=0.335 Sum_probs=166.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887763 2469999999999999999999999999999999999876 45899999998653
Q ss_pred c-----------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000838 773 H-----------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 841 (1262)
Q Consensus 773 ~-----------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 841 (1262)
. ...++.++|++|++.+++.+|+.||+.+...... ....+..++.++++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 1 1235679999999999989999999987543211 123334455688899999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+..|+.
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i 214 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRA 214 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999877999999999975 455667775
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=313.56 Aligned_cols=197 Identities=29% Similarity=0.404 Sum_probs=161.2
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 4677776552 2469999999999999999999999999999999999876 458999999987532
Q ss_pred c----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHH
Q 000838 774 E----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 774 ~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ..++.++|++|++.+++.+|++||+.+....+. ....++.+.++++.+ ++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHH
Confidence 1 124569999999999999999999988654321 122334466778877 466655654 3579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.+|+++
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 203 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAY 203 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEE
Confidence 999999999999999999999999999999999999999999877899999999975 4566777753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=322.37 Aligned_cols=205 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++... ...+.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 66888888764210 012469999999999999999999999999999999999876 45899999998764
Q ss_pred c-----ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000838 773 H-----ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN--PLRQSLVGLPGVNG 844 (1262)
Q Consensus 773 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 844 (1262)
. ...++.+||++|++. .+...||+||+.|..... ..+.++.+++++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134578999999863 333579999999865432 234455566789999999997 555654 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++...+|+++
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~ 216 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRII 216 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999765 899999999974 4566788853
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=316.07 Aligned_cols=200 Identities=27% Similarity=0.358 Sum_probs=165.5
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 46777776631 1459999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHH
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgG 848 (1262)
...++.++|++|++.+++.+|+.||+.+....+. .+.+..++.++++++.+++.+ ..++. +.+||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345678999999999999999999988654331 233344556889999999985 55554 3579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+++
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~ 207 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIA 207 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999765 899999999975 4566677753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=306.22 Aligned_cols=187 Identities=24% Similarity=0.316 Sum_probs=159.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45678877663 3469999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..+++++++++.+|+.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988899999999988654321 1 1234578899999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
||++||+||+++|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999975
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=321.04 Aligned_cols=190 Identities=25% Similarity=0.280 Sum_probs=160.2
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c----ccceEEEecCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE---T----FARISGYCEQNDI 788 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~ 788 (1262)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4589999999875321 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcce
Q 000838 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 868 (1262)
Q Consensus 789 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 868 (1262)
+++.+|+.||+.+...... ......+++++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988654321 223344456888999999988777764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 869 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+.+
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~ 232 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIA 232 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 9999999999999999999998754 899999999975 4566778753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=318.74 Aligned_cols=204 Identities=25% Similarity=0.264 Sum_probs=164.2
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677776652 02459999999999999999999999999999999999876 45899999998753
Q ss_pred c------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLR-----LAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 841 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 841 (1262)
. ..+++.++|++|++.+++.+|+.||+.+..... ..........+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 124567999999999999999999997642110 000111123345688899999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.+.+|+++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~ 217 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIV 217 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999975 4556778753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=343.09 Aligned_cols=193 Identities=21% Similarity=0.388 Sum_probs=157.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.||++||||+||||+.++|..+++|+ +|+|++||.|+.+.+. |++||+|.|||.+| +-||+|||.|+...
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF-s~sI~eNI~YG~~~--- 568 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF-SGSIRENIAYGLDN--- 568 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee-cccHHHHHhcCCCC---
Confidence 48999999999999999999999999 9999999999987654 58999999999887 46999999998751
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
...+.+.++++ ..+..--..++++.+||.||++ +.+||||||||++|||
T Consensus 569 -~t~e~i~~AAk-----------------------------~ANah~FI~~~p~gY~T~VGEk-G~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 569 -ATDEEIEAAAK-----------------------------MANAHEFITNFPDGYNTVVGEK-GSQLSGGQKQRIAIAR 617 (716)
T ss_pred -CCHHHHHHHHH-----------------------------HhChHHHHHhCccccccccCCc-cccccchHHHHHHHHH
Confidence 11122211111 1111123456899999999965 4579999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
||+.||+||||||.||+||+++...|.+.|.+.. +++| |++|.|. -...+.+|+|+|+++|++++.|+++++++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rT-VlvIAHR-LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRT-VLVIAHR-LSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCe-EEEEehh-hhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999998754 3444 4556664 55678899999999999999999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=329.82 Aligned_cols=191 Identities=26% Similarity=0.365 Sum_probs=162.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+||++|++.+++.+||+||+.+...+.+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999998 99999999987543 23467999999999999999999998755432210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+..++++++++.+||.+.+++.+ ++||||||||++||+|
T Consensus 146 ----------------------------------~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 ----------------------------------TREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARA 186 (340)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHH
Confidence 0011234567889999998887554 5799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++.++++.|+++.+ . +++|++++|+.+++.++||+|++|++|++++.|+++++..
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998754 3 4567779999999999999999999999999999988754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.60 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=167.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478899988763 3469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000838 772 KHE------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 772 ~~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 845 (1262)
... ..++.++|++|++.+++.+|+.||+.+...... ..+.+..++.+.++++.+|+.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 321 134679999999999999999999987643211 1223334456788999999988777654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|+++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~ 215 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAY 215 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEE
Confidence 999999999999999999999999999999999999999999998765 899999999974 4666777753
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=308.92 Aligned_cols=196 Identities=33% Similarity=0.474 Sum_probs=163.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. .+.+++|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4677777663 246999999999999 999999999999999999999876 458999999987542
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
...++.++|++|++.+++.+|+.||+.+....+. .+.++.++.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2345679999999999999999999988655432 222333456888999999987776653 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+..|+.
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i 199 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQV 199 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEE
Confidence 99999999999999999999999999999999999999876 599999999975 345566764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=313.32 Aligned_cols=189 Identities=28% Similarity=0.373 Sum_probs=157.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+....++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999876432 22357999999998999999999999865432210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+..++++++++.+||++..++ .+..||||||||++||+|
T Consensus 105 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 105 ----------------------------------GAERRERIDELLDFVGLLEAADR-----LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHhhC-----ChhhCCHHHHHHHHHHHH
Confidence 00112346778999999877664 456799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++...||++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999987543 24567779999999999999999999999999988664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=311.71 Aligned_cols=185 Identities=25% Similarity=0.376 Sum_probs=153.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC-
Confidence 47999999999999999999999988 999999999875432 2457999999988888999999998865322100
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..+. .+..||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 104 ---------------------------------KAEIRARVRELLELVGLEGLLNR-----YPHELSGGQQQRVALARAL 145 (213)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHH
Confidence 00112345678999999877664 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987543 2456777899999999999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=333.49 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=161.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999998 9999999998764321 2479999999999999999999999765
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.. ..+.+++++++++.+||.+..+ +.++.|||||||||
T Consensus 133 ~~~~~----------------------------------~~~~~~~~~e~L~~~gL~~~~~-----~~~~~LSgGq~QRv 173 (400)
T PRK10070 133 LAGIN----------------------------------AEERREKALDALRQVGLENYAH-----SYPDELSGGMRQRV 173 (400)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhh-----cCcccCCHHHHHHH
Confidence 43210 0011234677899999987766 45668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||+|++|++|+++..|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999987543 345677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 4
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=312.15 Aligned_cols=206 Identities=25% Similarity=0.282 Sum_probs=161.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4578888776310 001369999999999999999999999999999999999876 45899999998764
Q ss_pred c------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000838 773 H------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVN 843 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 843 (1262)
. ..+++.++|++|++ .+.+.+|++||+.+........ ...+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 2 23456899999998 4667899999998765433211 11111122235788999985 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|+++
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 217 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVA 217 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 79999999999999999999999999999999999999999999999876 899999999975 4555677653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=323.10 Aligned_cols=191 Identities=24% Similarity=0.378 Sum_probs=158.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----cccceEEeeccccC-CCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDN-HIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++. .+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999998 99999999988642 22467999999863 34467999999986543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc--ccccccccCCcccccccccchh
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD--NCADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqkqR 152 (1262)
.+. ..++.+++++++++.+||+ +..| +.++.||||||||
T Consensus 112 ~~~----------------------------------~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~~LSgGq~qr 152 (287)
T PRK13637 112 LGL----------------------------------SEEEIENRVKRAMNIVGLDYEDYKD-----KSPFELSGGQKRR 152 (287)
T ss_pred CCC----------------------------------CHHHHHHHHHHHHHHcCCCchhhcc-----CCcccCCHHHHHH
Confidence 211 0111234567889999997 4455 5567899999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++|||||+.+|++++|||||+|||+.++.++.+.|+++++. .+++|++++|+.+++..+||||++|++|++++.|++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999987543 35667779999999999999999999999999999887
Q ss_pred HH
Q 000838 233 VL 234 (1262)
Q Consensus 233 ~~ 234 (1262)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.65 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=167.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4678899887631 2359999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.+||++|++. .++..||.||+.|..... ..+....+++++++++.+||.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 42 234567999999963 445689999998864322 2333444556889999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i 208 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQV 208 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEE
Confidence 9999999999999999999999999999999999999999999877999999999975 455678885
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.04 Aligned_cols=201 Identities=27% Similarity=0.341 Sum_probs=167.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56778887663 2469999999999999999999999999999999999876 45899999998753
Q ss_pred c----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 773 H----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 773 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ...++.++|++|++.+++.+|+.||+.+....+. ..+.++.+..++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234679999999999998999999987643321 122334456688999999998766654 3579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++|+|||||+|||+.++..+.+.+++++++|+|||++||++. ++.+..|+++
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~ 208 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAY 208 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEE
Confidence 999999999999999999999999999999999999999998877999999999974 5667778753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.35 Aligned_cols=193 Identities=22% Similarity=0.296 Sum_probs=163.8
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEE
Confidence 3588999998773 2469999999999999999999999999999999999876 458999999876
Q ss_pred CCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 771 KKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 771 ~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
.. ..++.++|++|++.+++.+||+||+.+... . ..++++.++++.+|+.+..+..+ ..||||||
T Consensus 76 ~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqk 139 (257)
T PRK11247 76 LA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQK 139 (257)
T ss_pred HH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 43 345679999999999888999999987421 0 12345788999999987766653 57999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+.+|++
T Consensus 140 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i 204 (257)
T PRK11247 140 QRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRV 204 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999865 4899999999975 455677875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=310.41 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=163.9
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45678877663 2469999999999999999999999999999999999876 45899999998753
Q ss_pred c--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ....+.++|++|++.+++.+|+.||+.+....+ ....+...+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357899999998888999999998765432 1233334456888999999987776654 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++.. + +..|+.
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i 202 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRL 202 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEE
Confidence 999999999999999999999999999999999999999975 58999999999863 3 346764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=302.79 Aligned_cols=185 Identities=25% Similarity=0.319 Sum_probs=156.7
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4567776652 3569999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999999888888999999987643321 1 1 234778999999988777654 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
|++||||++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998777999999999974
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=296.01 Aligned_cols=193 Identities=28% Similarity=0.371 Sum_probs=166.7
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEecCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE----TFARISGYCEQNDIHSP 791 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 791 (1262)
+..++++|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+++.. ..+.-++--+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 46789999999999999999999999999999999999887 4589999999987532 23455778899999999
Q ss_pred CCCHHHHHHHHHHhhc--------CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000838 792 FVTVHESLAFSAWLRL--------AP-EVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862 (1262)
Q Consensus 792 ~lTv~e~l~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 862 (1262)
.|||.||+..+...+. +. ....++..+++.++|+.+||.+.+|...| +||+|||||+.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998754331 11 11344556778899999999999999865 6999999999999999999
Q ss_pred CCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 863 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|++|+||||.+||.+....++.+.|+++.++ |.||+++-||.. -++...|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~ 221 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIV 221 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEE
Confidence 9999999999999999999999999999875 799999999987 4788888853
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.38 Aligned_cols=204 Identities=25% Similarity=0.297 Sum_probs=166.8
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++... ...+.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889998874211 012459999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 773 H-------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 773 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
. ..+++.+||++|++ .++ ..||.||+.|+.... ..+.++.+++++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999999875432 233444456689999999996 555654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~ 217 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIV 217 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999765 899999999976 5677888854
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.80 Aligned_cols=205 Identities=24% Similarity=0.308 Sum_probs=166.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67889998874210 0123599999999999999999999999999999999998763 5799999986531
Q ss_pred ---------------------------cccccceEEEecCCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 000838 773 ---------------------------HETFARISGYCEQND-IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIM 824 (1262)
Q Consensus 773 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 824 (1262)
...+++.+||++|++ ..+...||+||+.|..... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 2344579999999875432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000838 825 ELVELN-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903 (1262)
Q Consensus 825 ~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 903 (1262)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhhc
Q 000838 904 PSIDIFESFDEAI 916 (1262)
Q Consensus 904 ~~~~~~~~fd~~~ 916 (1262)
+. .+.+..|+++
T Consensus 225 ~~-~~~~~adrv~ 236 (305)
T PRK13651 225 LD-NVLEWTKRTI 236 (305)
T ss_pred HH-HHHHhCCEEE
Confidence 75 4667788753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=338.49 Aligned_cols=204 Identities=27% Similarity=0.415 Sum_probs=169.4
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
...++|+|++++|+.. ++..+|+|+||+++|||.+||+||||+||||+.++|..... |.+|+|++||.
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 4689999999999864 34679999999999999999999999999999999998776 56899999999
Q ss_pred cCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--H-HcCCcccccccccCCCCC
Q 000838 770 PKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIM--E-LVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 770 ~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l--~-~l~l~~~~~~~~~~~~~~ 843 (1262)
|++ +..+++.+|+|.|+|.++. -|++||+.|+.. +.+.++....++..- + ..++.+-.|+.+|..+ .
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG-~ 603 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG-S 603 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc-c
Confidence 874 4567899999999999986 699999999753 334443322221110 0 1356677899999754 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+||||||||++|||||++||+||||||+||.||.++...+++.|.++.+ ++|||++.|..+ ..+.-|++
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~I 672 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQI 672 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEE
Confidence 7999999999999999999999999999999999999999999998764 699999999875 66777764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.58 Aligned_cols=186 Identities=31% Similarity=0.416 Sum_probs=157.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++..+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788887663 2469999999999999999999999999999999999876 45899999997653
Q ss_pred cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 773 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
....++.++|++|++.+++.+|+.||+.+....+. .. ++.++++++.+|+.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22255678999999888888999999987543321 11 123788999999987666553 4799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
++||||++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998777999999999975
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=291.42 Aligned_cols=198 Identities=27% Similarity=0.390 Sum_probs=163.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++..| ++.++|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5677887665 35689999999999999999999999999999999999876 34899999999875
Q ss_pred c----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000838 773 H----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 773 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSg 847 (1262)
. ...++-++||||....||.|||+|||..++..+.. ++..+...+++.+.+ .|.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 3 34567799999999999999999999987654422 111122266777776 36666777655 6999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++-++.. ...+.-|+.
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~ 207 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRG 207 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEE
Confidence 9999999999999999999999999999999999999999999976 778988888654 355566664
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=313.69 Aligned_cols=202 Identities=22% Similarity=0.249 Sum_probs=167.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 477899988763 3469999999999999999999999999999999999876 4589999999765
Q ss_pred Cc----------------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000838 772 KH----------------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR-Q 834 (1262)
Q Consensus 772 ~~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 834 (1262)
.. ..+++.++|++|++.+++.+|++||+.+...... .......++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1335679999999999999999999987542111 123344556688999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 835 ~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
.. +..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 4579999999999999999999999999999999999999999999999877999999999975 45556777
Q ss_pred hc
Q 000838 915 AI 916 (1262)
Q Consensus 915 ~~ 916 (1262)
++
T Consensus 222 i~ 223 (257)
T PRK10619 222 VI 223 (257)
T ss_pred EE
Confidence 53
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=322.00 Aligned_cols=215 Identities=21% Similarity=0.220 Sum_probs=170.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++............+...+++|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 57889999887532100000000123579999999999999999999999999999999999876 3589999999876
Q ss_pred Ccc------cccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 772 KHE------TFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
... .+++.++||+|++ .++|.+|+.|++.+...... ...+.++.+++++++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2456799999997 57889999999988654332 1234455666788999999995 344554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.+||||||||++|||||+.+|++|++||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.+..|++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri 232 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRV 232 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 579999999999999999999999999999999999999999999999765 899999999975 455567774
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=318.67 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=159.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-------ccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999988 999999998875422 13469999999989989999999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+.. ..+..++++++++.+||.+..++. ++.||||||||+
T Consensus 129 ~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 169 (269)
T cd03294 129 VQGVP----------------------------------RAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRV 169 (269)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHH
Confidence 32110 001123466789999998877644 457999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987543 345677789999999999999999999999999988766
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=312.09 Aligned_cols=201 Identities=23% Similarity=0.287 Sum_probs=164.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCc
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISGY 769 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 769 (1262)
+.++|+++.+. ++.+++|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46788887763 245999999999999999999999999999999999987632 12899999998
Q ss_pred cCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000838 770 PKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN----PLRQSLVGLP 840 (1262)
Q Consensus 770 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 840 (1262)
+... ...++.++|++|++.+++ .|+.||+.+....+. ..+..+.++.++++++.+|+. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999988654331 122334455688899999997 445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~ 214 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTA 214 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999876 489999999975 4666778753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=310.02 Aligned_cols=186 Identities=26% Similarity=0.366 Sum_probs=155.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. .++.++|++|++.+++.+|++||+.++...++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 104 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP-- 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999988 9999999988753 3457999999988888899999999865432210
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
..+..+.++++++.+||.+..+. .+..||||||||++|||||+
T Consensus 105 --------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 105 --------------------------------KAEARERAEELLELVGLSGFENA-----YPHQLSGGMRQRVALARALA 147 (220)
T ss_pred --------------------------------HHHHHHHHHHHHHHcCChhhhhC-----CcccCCHHHHHHHHHHHHHH
Confidence 00112346778999999876664 44679999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEec--CCeEEEecCcc
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLS--DGQIVYQGPRE 231 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~ 231 (1262)
.+|++++|||||+|||+.++..+++.|+++.+. .+++|++++|+.+++.+.||++++|+ +|++++.++.+
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999986443 34567778999999999999999999 79999887754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=304.25 Aligned_cols=196 Identities=24% Similarity=0.283 Sum_probs=164.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++..+. ++.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 578899987653 2469999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
.....++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 533344568999999988888999999988654321 11 2234678899999987777654 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
|++|||+++.+|++++|||||+|||+.++..+.+.|+++.++|+|+|++||++. ++.+..|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~ 206 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTR 206 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcce
Confidence 999999999999999999999999999999999999998888999999999975 45555555
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=324.07 Aligned_cols=191 Identities=26% Similarity=0.376 Sum_probs=159.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc--ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 999999998874321 2467999999998889999999998754322110
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+.+.+++++++.++|++..++. +++||||||||++||||
T Consensus 109 ----------------------------------~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 109 ----------------------------------TREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLTLARA 149 (303)
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHHHHHH
Confidence 001122456788999998877754 45799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++..+++.|+++++ . +++|++++|+.+++.++||++++|++|++++.|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998754 3 4567779999999999999999999999999999888753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=313.88 Aligned_cols=199 Identities=23% Similarity=0.336 Sum_probs=159.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc----cceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999988 9999999998764321 3469999999999999999999998754321
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
...... . . . .....+..+.++++++.+||++..+ +.++.|||||||||+||
T Consensus 105 ~~~~~~----~-----~----~-----------~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 155 (236)
T cd03219 105 GSGLLL----A-----R----A-----------RREEREARERAEELLERVGLADLAD-----RPAGELSYGQQRRLEIA 155 (236)
T ss_pred cccccc----c-----c----c-----------cccHHHHHHHHHHHHHHcCccchhh-----CChhhCCHHHHHHHHHH
Confidence 000000 0 0 0 0000112335678899999987666 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999998754 3 45677789999999999999999999999999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=311.15 Aligned_cols=180 Identities=24% Similarity=0.372 Sum_probs=150.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999988 999999998875321 245799999999899999999999987543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++.. .++.+++++++++.+||++..+. .+.+|||||||||+
T Consensus 108 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP----------------------------------PRDANERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVA 148 (216)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 2110 00112346778999999877664 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998643 3 45677789999999999999999999974
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=313.94 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=158.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++....+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999988 9999999988754322 3579999999988889999999998654321000
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
.. ...+..+.++++++.+||.+..+ +.+..|||||||||+|||||
T Consensus 107 ~~------------------------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 107 RP------------------------------PEAEIRAKVHELLKLVQLDWLAD-----RYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cC------------------------------CHHHHHHHHHHHHHHcCChhhhh-----cChhhCCHHHHHHHHHHHHH
Confidence 00 00011234567899999987666 34567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++...||++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999987543 245677789999999999999999999999999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=300.85 Aligned_cols=185 Identities=24% Similarity=0.334 Sum_probs=157.3
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 46788887763 2469999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
. ..+++.++|++|+..+++.+||.||+.+.... .. . +..++++++.+++.+..+..+ ..||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 23467799999998888899999999876421 11 1 234788999999977666543 47999999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
||++||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999975
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=327.60 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=160.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCc----cCCCCc-------ccceEEeeccccCCCCCCCHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGH----NMGEFV-------PQRTAAYISQHDNHIGEMTVRETLA 69 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~----~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~ 69 (1262)
+++|+||||||||||+++|+|+++|+ +|+|+++|. ++.... .++.++||+|++.+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999998 999999996 333221 1247999999999999999999999
Q ss_pred HHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000838 70 FSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQ 149 (1262)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1262)
++....+.. ..+.+.+++++++.+||++..| .++..|||||
T Consensus 129 ~~~~~~g~~----------------------------------~~~~~~~a~e~le~vgL~~~~~-----~~~~~LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMP----------------------------------EAERRKRVDEQLELVGLAQWAD-----KKPGELSGGM 169 (382)
T ss_pred HHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHH
Confidence 986543210 0112345678899999988776 4556799999
Q ss_pred chhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 150 KKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 150 kqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
||||+|||||+.+|+|+||||||+|||+.++.++.+.|+++.+. .+++|++++|+.+++.+++|||++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999987543 34567779999999999999999999999999999
Q ss_pred cchHH
Q 000838 230 RELVL 234 (1262)
Q Consensus 230 ~~~~~ 234 (1262)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 88764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=307.02 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=166.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++... ..+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 578899988764210 11359999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc-------cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000838 772 KHE-------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 772 ~~~-------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 844 (1262)
... ..++.++|++|++.+++.+|+.||+.+....+. ....+.+++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 321 113579999999999999999999987653321 223344566889999999987766653 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +..|+.
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i 216 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRR 216 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEE
Confidence 9999999999999999999999999999999999999999999998765 899999999986 33 446664
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.92 Aligned_cols=206 Identities=25% Similarity=0.326 Sum_probs=167.3
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++... ...+.+|+|||+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEE
Confidence 3588999999884210 012359999999999999999999999999999999999876 458999999976
Q ss_pred CCc-------------------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCC
Q 000838 771 KKH-------------------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL 829 (1262)
Q Consensus 771 ~~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 829 (1262)
... ...++.+|||+|++ .+++ .|+.||+.|+.... ..+.++..++++++++.+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL 165 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGL 165 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 532 23467899999986 3554 59999998864322 22344455668899999999
Q ss_pred c-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Q 000838 830 N-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 908 (1262)
Q Consensus 830 ~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 908 (1262)
. +..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++
T Consensus 166 ~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~ 239 (320)
T PRK13631 166 DDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HV 239 (320)
T ss_pred ChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HH
Confidence 6 455554 4579999999999999999999999999999999999999999999998877999999999975 45
Q ss_pred HHHhhhhc
Q 000838 909 FESFDEAI 916 (1262)
Q Consensus 909 ~~~fd~~~ 916 (1262)
.+..|+.+
T Consensus 240 ~~~adri~ 247 (320)
T PRK13631 240 LEVADEVI 247 (320)
T ss_pred HHhCCEEE
Confidence 67788753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=310.91 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=165.2
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 56888887763 2469999999999999999999999999999999999876 45899999998642
Q ss_pred ---------cccccceEEEecCCCCCCCCCCHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 773 ---------HETFARISGYCEQNDIHSPFVTVHESLAFSA-WLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 773 ---------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
....++.++|++|++.+++.+|+.||+.+.. ... .....+..+.+.++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 1123567999999999999999999997532 221 1223334456888999999987777653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+..|+.
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i 211 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRV 211 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEE
Confidence 479999999999999999999999999999999999999999999999777999999999975 455567774
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=307.21 Aligned_cols=156 Identities=26% Similarity=0.327 Sum_probs=125.3
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHH
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAW 804 (1262)
Q Consensus 725 s~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~ 804 (1262)
.+++..||+++++||||-||||+.++|+|-.++ .+|+ .. .-.++|=||--.--...||++.+.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 467788999999999999999999999998764 3554 11 1246777776555567899998764432
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHH
Q 000838 805 LRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884 (1262)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~ 884 (1262)
-+... .-...++.+-|+|++..++.+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+..+.
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 112457888899999888875 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCC
Q 000838 885 RTVRNTVDT-GRTVVCTIHQPS 905 (1262)
Q Consensus 885 ~~l~~~~~~-g~tvi~~~H~~~ 905 (1262)
+.||+..++ ++|.+++-||.-
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHhhcCceEEEEeccee
Confidence 999999865 899999999975
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=302.18 Aligned_cols=191 Identities=28% Similarity=0.341 Sum_probs=159.0
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677776653 2468999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
..+++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456799999999888899999999875311 1 2334788999999987766653 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|++||++. ++...+|+
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~ 194 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGAR 194 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccce
Confidence 999999999999999999999999999999999999998777999999999875 33334443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=317.75 Aligned_cols=204 Identities=25% Similarity=0.319 Sum_probs=166.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++... ...+.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56889998874210 011359999999999999999999999999999999999876 45899999998753
Q ss_pred c-------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 773 H-------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 773 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
. ...++.+||++|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23467899999986 4444 69999999875432 233455566788999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+++
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~ 215 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVY 215 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999877999999999974 5667788854
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=312.80 Aligned_cols=190 Identities=25% Similarity=0.356 Sum_probs=158.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999998 999999999875432 145799999999999899999999886543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++.. ..+..+.++++++.+||++..+ +.+..||||||||++
T Consensus 110 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 150 (233)
T cd03258 110 AGVP----------------------------------KAEIEERVLELLELVGLEDKAD-----AYPAQLSGGQKQRVG 150 (233)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHCCChhhhh-----cChhhCCHHHHHHHH
Confidence 2110 0011234567899999987766 345679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. ++++|++++|+.+++.++||++++|++|++++.|+.+++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999986543 345677789999999999999999999999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=329.87 Aligned_cols=185 Identities=23% Similarity=0.374 Sum_probs=159.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+||+||+.|+..
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999998 99999999887431 124679999999999999999999998532
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.. .+++++++++.+||++..+ +.++.|||||||||
T Consensus 103 ~~----------------------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qRv 137 (352)
T PRK11144 103 KS----------------------------------------MVAQFDKIVALLGIEPLLD-----RYPGSLSGGEKQRV 137 (352)
T ss_pred hh----------------------------------------hHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHH
Confidence 00 0123567899999987766 45568999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999987643 345677799999999999999999999999999999887
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 4
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=306.53 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=175.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC-C-CCceeEEEEECCccCCCCc-------ccceEEeecccc--CCCCCCCHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD-S-SLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHD--NHIGEMTVRETLA 69 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~-~-~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~--~~~~~lTv~e~l~ 69 (1262)
+++|+|+|||||||+.++|+|+++ + ....+|+|.++|.++.... +.+.+++++|++ .+-|.+||.+.+.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 479999999999999999999998 4 3346899999999875433 235899999994 6889999999998
Q ss_pred HHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000838 70 FSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQ 149 (1262)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1262)
-..+.+.... ..+|+++++.++|+.+||++-.. +-+.++.+|||||
T Consensus 113 E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGM 158 (316)
T COG0444 113 EVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcH
Confidence 7665431100 11234566788999999987432 2347899999999
Q ss_pred chhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 150 KKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 150 kqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ +.+++++.||||...+.++||||+||..|++++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999999999999999999999999999999999999876 456788889999999999999999999999999999
Q ss_pred cchHHHHHHhCCCCCCCCCChhhHHhhhc
Q 000838 230 RELVLEFFESMGFKCPQRKGVADFLQEVT 258 (1262)
Q Consensus 230 ~~~~~~~~~~~g~~~p~~~~~~~~~~~~~ 258 (1262)
.+++. ..|.+..+...+..+.
T Consensus 238 ~~~i~--------~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 238 VEEIF--------KNPKHPYTRGLLNSLP 258 (316)
T ss_pred HHHHh--------cCCCChHHHHHHHhCc
Confidence 99874 3466655555555443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=318.11 Aligned_cols=205 Identities=22% Similarity=0.340 Sum_probs=166.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367889998874210 012459999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000838 772 KH-------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPG 841 (1262)
Q Consensus 772 ~~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 841 (1262)
.. ..+++.+||++|++ .+++ .|+.||+.|..... ..+.++.+++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23467899999986 3444 59999999865332 234445556788999999996 556654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.+|+++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~ 217 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVI 217 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999976 4899999999975 4667788753
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=317.39 Aligned_cols=202 Identities=25% Similarity=0.300 Sum_probs=168.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 46789999887421 12359999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.+||++|++. .++..||.||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 234567999999973 667789999999865332 2344455567899999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + ...|++
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri 210 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRV 210 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEE
Confidence 9999999999999999999999999999999999999999999875 9999999999763 4 567874
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.19 Aligned_cols=190 Identities=25% Similarity=0.371 Sum_probs=162.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+||++|++.+++.+||.||+.+.+.+++..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999998 99999999887542 22457999999999999999999999876543210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.++..++++++++.+||.+..+. .++.||||||||++||+|
T Consensus 107 ----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 ----------------------------------GQLLKQRVEEMIELVGLRPEQHK-----KIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCchHhcC-----chhhCCHHHHHHHHHHHH
Confidence 01112346778999999988774 455799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++.++++.|+++. ++ ++|++++|+.+++.++||||++|++|++++.|+.+++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999863 23 667889999999999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=311.56 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=163.4
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 767 (1262)
..+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 6 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 6 AIIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred ceEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3678999988763 235899999999999999999999999999999999986532 247999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN----PLRQSLVG 838 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 838 (1262)
|.++.. ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 147 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN-- 147 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC--
Confidence 987531 234567999999988775 899999988654321 112233455678889988874 233443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||++||++. ++.+..|+.
T Consensus 148 ---~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i 219 (254)
T PRK14273 148 ---ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRT 219 (254)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999985 455667775
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=304.77 Aligned_cols=182 Identities=26% Similarity=0.345 Sum_probs=153.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEecCCCCCCCCCCHHHHHHH
Q 000838 723 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVTVHESLAF 801 (1262)
Q Consensus 723 ~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~ 801 (1262)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 458999999987642 1234679999999999999999999987
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHH
Q 000838 802 SAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881 (1262)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~ 881 (1262)
....+. .. .+..+++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 542211 11 1233456889999999987777653 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 882 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 882 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.+.+.|++++++ |+|||++||++. ++.+.+|+.
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i 199 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRV 199 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEE
Confidence 999999998764 899999999975 455667774
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=317.12 Aligned_cols=206 Identities=25% Similarity=0.301 Sum_probs=166.3
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 356888888774110 002459999999999999999999999999999999999877 4589999999875
Q ss_pred Cc-------ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 772 KH-------ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~-------~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
.. ...++.++|++|++. .+..+||.||+.+....+ ....++.+++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 134567999999963 233589999998765332 223444556688999999997 5666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ++.+..|+++
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~ 216 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVL 216 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999777999999999975 4667788753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=311.52 Aligned_cols=189 Identities=20% Similarity=0.348 Sum_probs=157.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999998 999999998875432 13469999999999999999999988643221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. ..+....++++++.+||++..++ .++.||||||||++||
T Consensus 105 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 145 (232)
T cd03218 105 LS----------------------------------KKEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIA 145 (232)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHH
Confidence 10 00112346778999999876664 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999998753 3 45677789999999999999999999999999987765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=310.56 Aligned_cols=204 Identities=23% Similarity=0.251 Sum_probs=165.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888887763 246999999999999999999999999999999999986531 3589999999
Q ss_pred ccCCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCC
Q 000838 769 YPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL----RQSLVGLPG 841 (1262)
Q Consensus 769 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~ 841 (1262)
.++.. ..+++.++|++|++.+++.+|+.||+.+....+.. .....+.++.++++++.+++.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87532 23456799999999888899999999886543211 11223344568889999998642 3333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||++. ++.+.+|+++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 216 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVA 216 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999975 4566778753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=311.81 Aligned_cols=200 Identities=25% Similarity=0.304 Sum_probs=165.9
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. .+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4678887763 2469999999999999999999999999999999999876 458999999976531
Q ss_pred ----------------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000838 774 ----------------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837 (1262)
Q Consensus 774 ----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 837 (1262)
...++.++|++|++.+++..|+.||+.+..... ........++.++++++.+|+.+..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 123567999999999999999999998753211 1123344455688999999998776665
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 838 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++....|+.+
T Consensus 144 ----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 144 ----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred ----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999975 4566778753
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.03 Aligned_cols=205 Identities=23% Similarity=0.352 Sum_probs=164.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeecccc-CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHD-NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..+...||.||+.|+.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 47999999999999999999999998 99999999987421 1246799999985 2333469999999976
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.. ..+.+.+++++++.+||. +..+ +.++.|||||||
T Consensus 111 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGqkq 151 (288)
T PRK13643 111 QNFGIP----------------------------------KEKAEKIAAEKLEMVGLADEFWE-----KSPFELSGGQMR 151 (288)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhcc-----CCcccCCHHHHH
Confidence 432210 011233567889999996 4454 456789999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++...||||++|++|+++++|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988753 3 456777999999999999999999999999999998
Q ss_pred hHHH---HHHhCCCCCCCCCC
Q 000838 232 LVLE---FFESMGFKCPQRKG 249 (1262)
Q Consensus 232 ~~~~---~~~~~g~~~p~~~~ 249 (1262)
++.. .++..|+.+|....
T Consensus 230 ~~~~~~~~~~~~~~~~p~~~~ 250 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKATH 250 (288)
T ss_pred HHHcCHHHHHHcCCCCChHHH
Confidence 8743 34455666554433
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.85 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=159.4
Q ss_pred EeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcchh
Q 000838 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYD 82 (1262)
Q Consensus 4 i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~ 82 (1262)
|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.|+.+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999998 999999999875432 2467999999999999999999999976432110
Q ss_pred hhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHhcC
Q 000838 83 MLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGP 162 (1262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~~~ 162 (1262)
..+.+++++++++.+||++..+ +.+..|||||||||+|||||+.+
T Consensus 74 ------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------------------------------RAEIKPRVLEALRLVQLEEFAD-----RKPHQLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------------------------------HHHHHHHHHHHHHHcCCcchhc-----CChhhCCHHHHHHHHHHHHHHhC
Confidence 0011234677899999988766 45668999999999999999999
Q ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 163 ALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 163 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+..++..+||++++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999987543 3456677899999999999999999999999999988764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=309.64 Aligned_cols=202 Identities=26% Similarity=0.293 Sum_probs=165.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ .+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56788887663 2469999999999999999999999999999999999876 45899999998753
Q ss_pred cc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 773 HE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-----PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 773 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.. ..++.++|++|++.+++.+|+.||+.+....... .....+..+++++++++.+|+.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1235699999999999999999999886432100 00112334456889999999987776654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|+++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~ 213 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVT 213 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEE
Confidence 7999999999999999999999999999999999999999999999875 789999999975 4666778753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=306.67 Aligned_cols=183 Identities=28% Similarity=0.427 Sum_probs=153.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc--ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999988 999999998875432 2467999999998999999999999865432110
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.++.++.++++++.+||++..++ .+..||||||||++||||
T Consensus 104 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 104 ----------------------------------SKEVKARVDEVLELVNLGDRAKK-----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHhC-----chhhCCHHHHHHHHHHHH
Confidence 00112346778999999877664 445799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|+.+|++++|||||+|||+.++..+.+.|++.++ + ++|++++|+.+++.+++||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998643 3 56778999999999999999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.01 Aligned_cols=193 Identities=22% Similarity=0.248 Sum_probs=160.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeecccc--CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHD--NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1262)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .++|.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999999886432 235799999997 5888999999999865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
.....+. ..++.++++.++++.+||. +..+ +++..|||||||
T Consensus 126 ~~~~~~~--------------------------------~~~~~~~~~~~~l~~vgl~~~~~~-----~~p~~LSgG~~Q 168 (331)
T PRK15079 126 RTYHPKL--------------------------------SRQEVKDRVKAMMLKVGLLPNLIN-----RYPHEFSGGQCQ 168 (331)
T ss_pred HHhccCC--------------------------------CHHHHHHHHHHHHHHcCCChHHhc-----CCcccCCHHHHH
Confidence 4321000 0011234567789999994 4444 567789999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+|||||+.+|+++++||||+|||+.++.++++.|+++.+. .+.++++++|+...+.++||+|++|++|++++.|+.+
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999987543 3567788999999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 248 ~i~ 250 (331)
T PRK15079 248 EVY 250 (331)
T ss_pred HHH
Confidence 764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.30 Aligned_cols=191 Identities=20% Similarity=0.314 Sum_probs=157.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccC-CCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDN-HIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++... ..++.++||+|++. .+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999998 99999999987421 12357999999852 333579999999875
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.. .++..++++++++.+||. +..+ +.++.|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (290)
T PRK13634 112 MNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLA-----RSPFELSGGQMR 152 (290)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhh-----CCcccCCHHHHH
Confidence 432110 011223567889999997 5555 456689999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+|||||+.+|+++||||||+|||+.++.++.+.|+++++. .+++|++++|+.+++.+.||||++|++|++++.|+++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987543 3456777999999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 232 ~~~ 234 (290)
T PRK13634 232 EIF 234 (290)
T ss_pred HHh
Confidence 764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=309.78 Aligned_cols=204 Identities=23% Similarity=0.249 Sum_probs=161.1
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 4678877763 246999999999999999999999999999999999984211468999999987532
Q ss_pred ---cc-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCC
Q 000838 774 ---ET-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP----EVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNG 844 (1262)
Q Consensus 774 ---~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~ 844 (1262)
.. .+..++|++|++.+++.+|++|++.+........ ..+..+..+.++++++.+++. +..++.+. .+
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 12 2334899999999999999999998764322110 012233345688899999997 34554422 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hhhh
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDEA 915 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fd~~ 915 (1262)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... .|++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i 215 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYV 215 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeE
Confidence 9999999999999999999999999999999999999999999999877899999999975 33344 4764
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=309.87 Aligned_cols=199 Identities=24% Similarity=0.345 Sum_probs=163.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. .+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 477889988763 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000838 772 KHE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 772 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lS 846 (1262)
... ..++.++|++|++.+++.+||.||+.+..... ..+..++.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 421 23567999999999999999999998754211 1122334466777777 466555544 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+.+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 208 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGY 208 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999877999999999974 5667778753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=328.20 Aligned_cols=189 Identities=23% Similarity=0.408 Sum_probs=160.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999998 99999999887432 124679999999999999999999998653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
... ..+.+++++++++.+||++..+ +.+..|||||||||
T Consensus 102 ~~~------------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGqkqRv 140 (354)
T TIGR02142 102 RAR------------------------------------PSERRISFERVIELLGIGHLLG-----RLPGRLSGGEKQRV 140 (354)
T ss_pred ccC------------------------------------hhHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHH
Confidence 210 0011234677899999988776 45568999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..++|++++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999987543 245677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 220 ~ 220 (354)
T TIGR02142 220 W 220 (354)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=311.86 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=165.3
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56788887763 2469999999999999999999999999999999999876 45899999998653
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
. ..+++.++|++|++.+++.+|++||+.+...... ...+..++.++++++.+|+.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2344678999999888888999999987542211 112233455788999999987777654 4799999
Q ss_pred HHHHHHHHHHh------hCCCCcceeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+..|+++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 212 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIV 212 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEE
Confidence 99999999999 5999999999999999999999999999987 56899999999975 4566778753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=306.55 Aligned_cols=185 Identities=28% Similarity=0.393 Sum_probs=154.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..|++||+.++....+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-
Confidence 47899999999999999999999988 999999999875432 2357999999998888899999998865432110
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
.++.+++++++++.+||.+..+. .++.||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~laral 145 (213)
T cd03301 104 ---------------------------------KDEIDERVREVAELLQIEHLLDR-----KPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHhC-----ChhhCCHHHHHHHHHHHHH
Confidence 00112346778999999877664 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
+.+|++++|||||+|||+.++..+.+.|+++++.. +++|++++|+.+++...||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999876433 456677899999999999999999999998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=306.50 Aligned_cols=183 Identities=24% Similarity=0.366 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. ..++.++|++|++.+++.+|++||+.+....++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK-- 101 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999988 9999999988754 23467999999998889999999998865432210
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
..+..+.++++++.+||++..++ .+++||||||||++||+||+
T Consensus 102 --------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 102 --------------------------------KEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred --------------------------------hHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHh
Confidence 00112346778999999877664 45679999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
.+|++++|||||+|||+.++..+.+.|++..+ + +.+|++++|+.+++.+.||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998653 3 456777999999999999999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=326.56 Aligned_cols=189 Identities=24% Similarity=0.270 Sum_probs=161.5
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c----ccceEEEecCCCCC
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE---T----FARISGYCEQNDIH 789 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~ 789 (1262)
...+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . +++.++|++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999876 4589999999876421 1 23579999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCccee
Q 000838 790 SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 869 (1262)
Q Consensus 790 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 869 (1262)
++.+||.||+.+....+. ...++.+++++++++.+||.+..++.+ .+||||||||++|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 233445566889999999988777764 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc
Q 000838 870 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 870 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||+|||+.++..+++.|+++.+ .|+|||++||++. ++.+..|+++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~ 236 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIA 236 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999999999875 4899999999975 5667788753
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=305.08 Aligned_cols=194 Identities=24% Similarity=0.326 Sum_probs=162.9
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4667776652 2469999999999999999999999999999999999876 458999999987543
Q ss_pred ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000838 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRL 853 (1262)
Q Consensus 774 ~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 853 (1262)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++.+.++++.+|+.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2578999999998888999999987654332 11 234778999999988777653 47999999999
Q ss_pred HHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 854 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 854 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+++
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 195 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIG 195 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEE
Confidence 9999999999999999999999999999999999999777899999999975 4566778753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=315.51 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=168.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~ 69 (283)
T PRK13636 4 YILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKP 69 (283)
T ss_pred ceEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEE
Confidence 35789999988731 2459999999999999999999999999999999999876 458999999987
Q ss_pred CC-----cccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000838 771 KK-----HETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 771 ~~-----~~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 844 (1262)
.. ...+++.+||++|++. .+...|++||+.+..... ..+.++.+++++++++.+||.+..++. ++.
T Consensus 70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~ 141 (283)
T PRK13636 70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THC 141 (283)
T ss_pred CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----ccc
Confidence 63 1234578999999974 234579999998864322 223444456688999999998877765 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++
T Consensus 142 LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~ 213 (283)
T PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVF 213 (283)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999865 899999999975 3556788753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.52 Aligned_cols=190 Identities=23% Similarity=0.334 Sum_probs=156.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC---------------------------CcccceEEeec
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE---------------------------FVPQRTAAYIS 53 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1262)
+++|+||||||||||+++|+|.++|+ +|+|+++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999998 8999999876421 11245799999
Q ss_pred ccc-CCCCCCCHHHHHHHHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-c
Q 000838 54 QHD-NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-N 131 (1262)
Q Consensus 54 Q~~-~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~ 131 (1262)
|++ ..+...||+|||.|+....+.. .++..++++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChh
Confidence 985 3445679999999876432210 011234567889999996 5
Q ss_pred cccccccCCcccccccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHH
Q 000838 132 CADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYN 211 (1262)
Q Consensus 132 ~~~t~vg~~~~~~LSGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 211 (1262)
..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|++++|+.+++.+
T Consensus 158 ~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 158 YLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-GKTIILVTHDLDNVLE 230 (305)
T ss_pred hhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeeCHHHHHH
Confidence 555 55678999999999999999999999999999999999999999999998753 3 4567779999999999
Q ss_pred hccceEEecCCeEEEecCcchHH
Q 000838 212 LFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 212 ~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
.||||++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=311.99 Aligned_cols=204 Identities=23% Similarity=0.224 Sum_probs=166.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 477889987763 3469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc---c-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000838 772 KHE---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLA----------P--EVDSETRKMFIEEIMELVELNPLRQS 835 (1262)
Q Consensus 772 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~ 835 (1262)
... . .+..++|++|++.+++.+|+.||+.+....... . .....+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 421 1 234589999999999999999999985321100 0 00112233457888999999877766
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000838 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 836 ~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
.+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 54 479999999999999999999999999999999999999999999999775 899999999975 45667787
Q ss_pred hc
Q 000838 915 AI 916 (1262)
Q Consensus 915 ~~ 916 (1262)
++
T Consensus 224 i~ 225 (255)
T PRK11300 224 IY 225 (255)
T ss_pred EE
Confidence 53
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=350.22 Aligned_cols=193 Identities=26% Similarity=0.391 Sum_probs=155.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.+||+|+||||||||+|+|+|+++|. +|+|.+||.|+...+. |+++|||+||+.+| +-||+||+.++...
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~--- 573 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPE--- 573 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCCC---
Confidence 37999999999999999999999998 9999999999876543 68999999998665 67999999985421
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
...+...+++ ...+ ++ -...+++..+||.+|+ ...+||||||||++|||
T Consensus 574 -~~~e~i~~A~---------------------~~ag------~~--~fI~~lP~gy~t~v~E-~G~~LSGGQrQrlalAR 622 (709)
T COG2274 574 -ATDEEIIEAA---------------------QLAG------AH--EFIENLPMGYDTPVGE-GGANLSGGQRQRLALAR 622 (709)
T ss_pred -CCHHHHHHHH---------------------HHhC------cH--HHHHhccccccccccc-CCCCCCHHHHHHHHHHH
Confidence 1111111221 1111 01 1234689999999995 56689999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
||+++|+||+||||||+||+.+...|.+.|.+.. .++|+|+ ++|. ....+.||||+||++|+++++|+++++.+
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~-IaHR-l~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVII-IAHR-LSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEE-EEcc-chHhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999999999999998863 3456555 5554 45778999999999999999999999876
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=312.22 Aligned_cols=203 Identities=27% Similarity=0.341 Sum_probs=166.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56788887763 3569999999999999999999999999999999999866 45899999998653
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRL-APEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ..+++.++|++|+..+++.+|+.||+.++..... ......+..++.++++++.+|+.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 2345679999999988888999999987521100 00111123345578899999998777765 3579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++||||++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|+++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~ 209 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLV 209 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEE
Confidence 999999999999999999999999999999999999999998777999999999975 5667788753
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=310.26 Aligned_cols=201 Identities=24% Similarity=0.281 Sum_probs=163.3
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 767 (1262)
..+.++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|..++ .+.+|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 3578899988763 24699999999999999999999999999999999997653 1358999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVG 838 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 838 (1262)
|.+... ..+++.++|++|++.+++ +|+.||+.+....+ ..+.+..++.++++++.+++.+ ..++.
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 151 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP-- 151 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--
Confidence 987532 134567999999988887 89999999865432 1233334456788999998842 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+..|+.
T Consensus 152 ---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i 223 (258)
T PRK14268 152 ---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYT 223 (258)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 455667774
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=312.17 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=158.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999988 999999999875432 245799999999889999999999875421
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.. .... ...+. ...+..++++++++.+||.+..+ ..+..|||||||||+
T Consensus 106 ~~--~~~~---------~~~~~---------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 154 (241)
T cd03256 106 RR--STWR---------SLFGL---------------FPKEEKQRALAALERVGLLDKAY-----QRADQLSGGQQQRVA 154 (241)
T ss_pred cc--hhhh---------hhccc---------------CcHHHHHHHHHHHHHcCChhhhC-----CCcccCCHHHHHHHH
Confidence 10 0000 00000 00011234677899999987665 445689999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|++++|+.+++..+||++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999999999999999999999999999999875433 45677789999999999999999999999999988765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=310.16 Aligned_cols=204 Identities=23% Similarity=0.230 Sum_probs=165.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 467889988763 246999999999999999999999999999999999987642 3589999999
Q ss_pred ccCC-----cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKK-----HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.++. ...+++.++|++|++.+++.+|+.||+.+....+.. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543211 1123334455788999998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++....|+++
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 219 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVA 219 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999975 4566778753
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=308.65 Aligned_cols=180 Identities=26% Similarity=0.383 Sum_probs=149.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-------ccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999988 999999999875432 13579999999989999999999998764
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.. ..+.++.++++++.+||++..+ +.++.||||||||+
T Consensus 109 ~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 149 (218)
T cd03255 109 LAGVP----------------------------------KKERRERAEELLERVGLGDRLN-----HYPSELSGGQQQRV 149 (218)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----cChhhcCHHHHHHH
Confidence 33210 0011234677899999987666 34567999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999987542 2456777889888886 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.68 Aligned_cols=200 Identities=22% Similarity=0.422 Sum_probs=160.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------------------cccceEEeecccc--CCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------------------VPQRTAAYISQHD--NHI 59 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999998 99999999887432 1246799999986 355
Q ss_pred CCCCHHHHHHHHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-cccccccc
Q 000838 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVG 138 (1262)
Q Consensus 60 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg 138 (1262)
+ .||+||+.|+....+. ..++..++++++++.+||+ +..+
T Consensus 131 ~-~tv~eni~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~gL~~~~~~---- 171 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGV----------------------------------KKSEAKKLAKFYLNKMGLDDSYLE---- 171 (320)
T ss_pred c-chHHHHHHhhHHhcCC----------------------------------CHHHHHHHHHHHHHHcCCChhHhc----
Confidence 4 5999999987532210 0011223567789999996 4444
Q ss_pred CCcccccccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEE
Q 000838 139 DEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIIL 218 (1262)
Q Consensus 139 ~~~~~~LSGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~v 218 (1262)
+.+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ + +++|++++|+.+++.+.||+|++
T Consensus 172 -~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 172 -RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999988653 3 45677799999999999999999
Q ss_pred ecCCeEEEecCcchHHH---HHHhCCCCCC
Q 000838 219 LSDGQIVYQGPRELVLE---FFESMGFKCP 245 (1262)
Q Consensus 219 l~~G~i~~~G~~~~~~~---~~~~~g~~~p 245 (1262)
|++|++++.|+++++.+ .++..|+..|
T Consensus 249 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999999999887642 2334454443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=313.82 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=165.1
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 45788887763 12359999999999999999999999999999999999876 45899999998763
Q ss_pred c----ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 773 H----ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 773 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
. ...++.++|++|++. .+...|+.||+.+..... ..+..+.++.++++++.+|+.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998765332 2234444566889999999988777653 57999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. + +..|++
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v 205 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRI 205 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEE
Confidence 99999999999999999999999999999999999999999998779999999999863 4 567775
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=298.37 Aligned_cols=185 Identities=30% Similarity=0.565 Sum_probs=154.3
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYP 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 770 (1262)
.+.|+|+++.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999998643 13467999999999999999999999999999999999986532 468999999987
Q ss_pred CCc--ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 771 KKH--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 771 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998753210 1222 3479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ +.|+|+++|+...++.+..|+++
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 999999999999999999999999999999999999999999765 67888887776567777888753
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=311.52 Aligned_cols=190 Identities=25% Similarity=0.379 Sum_probs=158.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999988 999999998875432 245799999999899999999999886543211
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc--cccccccCCcccccccccchhhHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN--CADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
. ..+..+.+.++++.+||++ ..+ +.++.|||||||||+|
T Consensus 106 ~----------------------------------~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~~LS~G~~qrv~l 146 (242)
T cd03295 106 P----------------------------------KEKIRERADELLALVGLDPAEFAD-----RYPHELSGGQQQRVGV 146 (242)
T ss_pred C----------------------------------HHHHHHHHHHHHHHcCCCcHHHHh-----cChhhCCHHHHHHHHH
Confidence 0 0011234667899999985 444 4567899999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.+|++++|++|++++.|+++++
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999987543 245677789999999999999999999999999987765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=312.72 Aligned_cols=205 Identities=28% Similarity=0.380 Sum_probs=167.4
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 74 (265)
T PRK10575 10 TTFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQP 74 (265)
T ss_pred ceEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEe
Confidence 3578899988763 2469999999999999999999999999999999999876 458999999986
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 149 (265)
T PRK10575 75 LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLS 149 (265)
T ss_pred hhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 532 23456799999998888889999999875321100 00111223455788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+++
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~ 219 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLV 219 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667778753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=314.66 Aligned_cols=201 Identities=26% Similarity=0.291 Sum_probs=167.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 4778999887731 12459999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.+++++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 666789999998865432 1233444566899999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + +.+|++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i 210 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRV 210 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEE
Confidence 9999999999999999999999999999999999999999999876 8999999999863 3 457874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=309.92 Aligned_cols=189 Identities=21% Similarity=0.334 Sum_probs=155.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCC-----CCCCceeEEEEECCccCCCCc-----ccceEEeeccccCCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL-----DSSLKVSGRVTYNGHNMGEFV-----PQRTAAYISQHDNHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~-----~~~~~~~G~v~~~g~~~~~~~-----~~~~~~yv~Q~~~~~~~lTv~e~l~f 70 (1262)
+++|+||||||||||+++|+|.+ +|. +|+|.++|.++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 777 999999999875432 245799999998877 7999999998
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
+....+... ..+.+++++++++.+||.+..+..+. +.+||||||
T Consensus 104 ~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIKL---------------------------------KEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCCc---------------------------------HHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 654321100 00112346678999999876553220 468999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||++|||||+.+|++++|||||+|||+.++..+++.|++.++ + ++|++++|+.+++.+.||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999998643 3 6677899999999999999999999999999987
Q ss_pred ch
Q 000838 231 EL 232 (1262)
Q Consensus 231 ~~ 232 (1262)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=309.51 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=165.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 467889988763 246999999999999999999999999999999999986532 2589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++.+|+.||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988654331 1123344556788999999842 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+++
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~ 218 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTA 218 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999864 689999999975 4666778753
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=308.00 Aligned_cols=188 Identities=30% Similarity=0.443 Sum_probs=157.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999987532 22456999999998888999999998865432210
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+..+.++++++.+||.+..++. +..||||||||++||||
T Consensus 107 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 107 ----------------------------------KSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHH
Confidence 001123456789999998777644 45799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|+.+|++++|||||+|||+.++..+.+.|++.++ + .+|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998642 3 6677799999999999999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=302.94 Aligned_cols=203 Identities=24% Similarity=0.345 Sum_probs=167.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888765310 012579999999999999999999999999999999999876 45899999998753
Q ss_pred c------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ...++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+|+.+..++. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1245779999999999998999999998654321 123344456688999999998777665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+..|++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v 211 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRI 211 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEE
Confidence 9999999999999999999999999999999999999999999876 4899999999974 45677764
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=312.73 Aligned_cols=201 Identities=26% Similarity=0.341 Sum_probs=166.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++. .+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 568888887631 2358999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 773 H---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ...++.++|++|++. .+...||.||+.+..... ..+.+..+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 234567899999974 334589999998765322 2334445566889999999988777664 579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+..|+++
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~ 209 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIY 209 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999875 899999999976 5667788753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.51 Aligned_cols=199 Identities=28% Similarity=0.428 Sum_probs=166.8
Q ss_pred CCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECC
Q 000838 689 EPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG 768 (1262)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g 768 (1262)
.+..++|+|+++++. +++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|++||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999885 23459999999999999999999999999999999998765 479999999
Q ss_pred ccCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 000838 769 YPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVG 838 (1262)
Q Consensus 769 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~ 838 (1262)
.+++ .+..|+.+||||||..++. -|+.+|+.++ ++..+.++ +-++.+..|+.+. ..+.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YG-----n~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYG-----NPSASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcC-----CCCcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 3567899999999988875 6999999985 23344333 5666777776643 345566
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.. ...|||||||||+||||++++|+|+++|||||+||..+.+++++.+.+. ..|+|+|++.|+. ++...||+++
T Consensus 483 er-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~ 556 (591)
T KOG0057|consen 483 ER-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKII 556 (591)
T ss_pred hc-ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEE
Confidence 54 4569999999999999999999999999999999999999999999984 4589999999986 4889999965
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=314.55 Aligned_cols=189 Identities=24% Similarity=0.313 Sum_probs=156.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999998 999999999875432 2357999999863 4557899999998654221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. ..+.+++++++++.+||.+..+ +.+..|||||||||+||
T Consensus 110 ~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 110 LD----------------------------------KDEVERRVEEALKAVRMWDFRD-----KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHHHhc-----CChhhCCHHHHHHHHHH
Confidence 10 0012234677899999987766 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||+.+|++++|||||+|||+.++.++.+.|+++++ . +.+|++++|+.+++.+.||||++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998754 3 45677799999999999999999999999999998653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=307.31 Aligned_cols=184 Identities=28% Similarity=0.426 Sum_probs=153.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+....++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999887532 22467999999998889899999998755432110
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.++..++++++++.+||.+..+. .++.||||||||++||||
T Consensus 110 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lara 150 (218)
T cd03266 110 ----------------------------------GDELTARLEELADRLGMEELLDR-----RVGGFSTGMRQKVAIARA 150 (218)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCCHHHHhh-----hhhhcCHHHHHHHHHHHH
Confidence 00122356778999999877663 456799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++...+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998743 3 456777899999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=313.03 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=163.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 45788887763 2458999999999999999999999999999999999876 45899999998753
Q ss_pred c-----ccccceEEEecCCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H-----ETFARISGYCEQNDIH-SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~-----~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ...++.++|++|++.. +...|+.||+.+....+ ....++.++.++++++.+|+.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1335679999999753 34568999998764332 1233344456788999999987776653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+.+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~ 207 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVY 207 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999877899999999975 4556678753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=307.99 Aligned_cols=208 Identities=23% Similarity=0.287 Sum_probs=164.1
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEE
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIKI 766 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~ 766 (1262)
|..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34688999998773 2469999999999999999999999999999999999742 1 135899999
Q ss_pred CCccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000838 767 SGYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 841 (1262)
Q Consensus 767 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 841 (1262)
+|.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..+++++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987532 134567999999988887 5999999886543311 1223344567889999998542211111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+..|+++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~ 219 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTA 219 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999975 4556778753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=309.39 Aligned_cols=207 Identities=20% Similarity=0.245 Sum_probs=166.5
Q ss_pred CCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEE
Q 000838 687 PFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGS 763 (1262)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~ 763 (1262)
|.+...+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+
T Consensus 8 ~~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred cCCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 34456788999998773 2369999999999999999999999999999999999764 1 135899
Q ss_pred EEECCccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 000838 764 IKISGYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQ 834 (1262)
Q Consensus 764 i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~ 834 (1262)
|.++|.+... ...++.++|++|++.+++ .|++||+.+...... ..+.++.+++++++++.+++.+ ..+
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999987531 234567999999988887 899999987653221 1233344456889999999853 233
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhh
Q 000838 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 835 ~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
.. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. ++.+..|+
T Consensus 152 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 152 QS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 33 45799999999999999999999999999999999999999999999986 4789999999975 45566777
Q ss_pred hc
Q 000838 915 AI 916 (1262)
Q Consensus 915 ~~ 916 (1262)
++
T Consensus 225 i~ 226 (260)
T PRK10744 225 TA 226 (260)
T ss_pred EE
Confidence 53
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=303.43 Aligned_cols=180 Identities=24% Similarity=0.368 Sum_probs=151.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-cccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999988 99999999887532 2245799999999889999999999886532110
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
.+++++++++.+||.+..+. .+..|||||||||+||||+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKK-----KVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhh-----hHhhCCHHHHHHHHHHHHH
Confidence 01235677899999877664 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
+.+|++++|||||+|||+.++..+.+.|++..+ . +.++++++|+.+++.+.+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998654 3 456777899999999999999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=270.16 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=155.9
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
++|+|||||||||||-+++|+..|+ +|+|.+.|+++..++ +.+.+|+|+|...++|++|.-||+...+++
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 7999999999999999999999998 999999999986543 237899999999999999999999998888
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++-..+ +......+.|+.+||.+..+ .++.+|||||+|||+
T Consensus 116 ~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVA 156 (228)
T COG4181 116 RGESSA----------------------------------DSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVA 156 (228)
T ss_pred cCCccc----------------------------------cHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHH
Confidence 752111 12234567899999998765 577899999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEE
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVY 226 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~ 226 (1262)
||||+...|+|||.||||-.||..+..+|.++|-.+.+. .+++.+.+||| +.+...|||++-|.+|+++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD-~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHD-PQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCC-HHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999877654 46777778998 45677899999999999874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=303.72 Aligned_cols=177 Identities=26% Similarity=0.346 Sum_probs=147.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccC-CCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDN-HIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+|++||+.++....+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--- 101 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--- 101 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC---
Confidence 47999999999999999999999998 9999999988754334567999999963 3456799999987542110
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
+..++++++++.+||.+..+. .++.||||||||++|||||
T Consensus 102 -----------------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral 141 (205)
T cd03226 102 -----------------------------------AGNEQAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred -----------------------------------ccHHHHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHH
Confidence 001245678999999887764 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1262)
+.+|++++|||||+|||+.++..+.+.|++.++ . +.+|++++|+.+++.+.||++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999998753 3 456777899999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=303.97 Aligned_cols=199 Identities=28% Similarity=0.377 Sum_probs=166.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677877663 2469999999999999999999999999999999999876 357999999987643
Q ss_pred c-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 E-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
. ..++.++|++|++.+++.+|+.||+.+....+. .+....++.++++++.+|+.+..+..+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 234679999999999888999999987654331 223334456788999999988777653 5799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|+++
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~ 202 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIA 202 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 99999999999999999999999999999999999998765 899999999984 4667788753
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=312.19 Aligned_cols=205 Identities=23% Similarity=0.284 Sum_probs=168.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEE
Confidence 3678899988773 3469999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ...++.++|++|++.+++.+|+.||+.+....... .....+..++.++++++.+|+.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 532 23345799999999988889999999864211100 0001123345678899999998776665 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~ 215 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLI 215 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999764 899999999985 5777888753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=310.71 Aligned_cols=205 Identities=26% Similarity=0.311 Sum_probs=166.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYP 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 770 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 467889887763 346999999999999999999999999999999999987643 236999999986
Q ss_pred CCc--------ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000838 771 KKH--------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-----PEVDSETRKMFIEEIMELVELNPLRQSLV 837 (1262)
Q Consensus 771 ~~~--------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 837 (1262)
... ...++.++|++|++.+++.+|+.||+.+......+ .....++.+++++++++.+|+.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345789999999999999999999875321000 01112234456889999999987777654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 838 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+..|++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i 223 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERI 223 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 479999999999999999999999999999999999999999999999764 899999999985 355667774
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=311.64 Aligned_cols=202 Identities=25% Similarity=0.312 Sum_probs=166.8
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 35788999887631 12468999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ..+++.++|++|++. .++.+|+.||+.+..... ..+.++.++.++++++.+||.+..++.+ +.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCC
Confidence 642 234667999999974 567789999998864322 1233444556889999999988777764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++.. + ...|++
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v 212 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKV 212 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEE
Confidence 99999999999999999999999999999999999999999999766 5999999999863 3 457764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=306.76 Aligned_cols=187 Identities=21% Similarity=0.375 Sum_probs=154.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc----cceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999988 9999999988754321 3569999999989999999999988653221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHh-CCcccccccccCCcccccccccchhhHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVL-GLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
. .+.+..++++++.+ ++++..+ ..++.||||||||++|
T Consensus 105 ~------------------------------------~~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~l 143 (222)
T cd03224 105 R------------------------------------AKRKARLERVYELFPRLKERRK-----QLAGTLSGGEQQMLAI 143 (222)
T ss_pred c------------------------------------hhHHHHHHHHHHHHHhhhhhhh-----CchhhCCHHHHHHHHH
Confidence 0 00112344566666 4666555 4456799999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999998753 3 45677789999999999999999999999999987764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=301.34 Aligned_cols=197 Identities=25% Similarity=0.328 Sum_probs=161.6
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ..++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 4677776652 13579999999999999999999999999999999876 458999999987542
Q ss_pred -ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 -ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 -~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
...++.++|++|++.+++.+|+.||+.+...... ... ...+++++++++.+|+.+..++. +..||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHH
Confidence 2345679999999999999999999987532211 111 22344578899999998777665 35799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+..|+.+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~ 200 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIA 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEE
Confidence 99999999999999999999999999999999999998765 899999999975 4556677753
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=309.73 Aligned_cols=210 Identities=24% Similarity=0.303 Sum_probs=165.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+......+ ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56788888774210000 0123579999999999999999999999999999999999876 45899999998754
Q ss_pred cc------cccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000838 773 HE------TFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVN 843 (1262)
Q Consensus 773 ~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 843 (1262)
.. ..++.++|++|++ .+.+.+|+.||+.+..... ........+++++++++.+|+. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 4667899999998754321 1122333445688999999996 555554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.+..|+.+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~ 222 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVA 222 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEE
Confidence 79999999999999999999999999999999999999999999998865 899999999975 4556778753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=275.96 Aligned_cols=204 Identities=24% Similarity=0.326 Sum_probs=168.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC----------c------ccceEEeeccccCCCCCCCH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF----------V------PQRTAAYISQHDNHIGEMTV 64 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~----------~------~~~~~~yv~Q~~~~~~~lTv 64 (1262)
++.|+|.|||||||+|+||.-+..|+ .|.|.+||..+.-. + .+.+.++|+|+.+++..+||
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 36899999999999999999999998 99999999876311 1 12467999999999999999
Q ss_pred HHHHHHHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccc
Q 000838 65 RETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRG 144 (1262)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 144 (1262)
-||+.-+..- ....+..++.++++.+|..+||.+.+| .++..
T Consensus 111 LeNViEaPvh---------------------------------VLg~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~ 152 (256)
T COG4598 111 LENVIEAPVH---------------------------------VLGVSKAEAIERAEKYLAKVGIAEKAD-----AYPAH 152 (256)
T ss_pred HHHHHhcchH---------------------------------hhcCCHHHHHHHHHHHHHHhCchhhhh-----cCccc
Confidence 9999764321 011123345566788999999999887 57778
Q ss_pred cccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 145 ISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 145 LSGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
|||||+||++|||||+.+|+++++|||||+|||+-.-++++.++++++. |+ +.+.+||.+..+.+...+++.|++|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-gr-TMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GR-TMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CC-eEEEEeeehhHHHhhhhheEEeeccee
Confidence 9999999999999999999999999999999999999999999999863 44 455589999999999999999999999
Q ss_pred EEecCcchHHHHHHhCCCCCCCCCChhhHHh
Q 000838 225 VYQGPRELVLEFFESMGFKCPQRKGVADFLQ 255 (1262)
Q Consensus 225 ~~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~ 255 (1262)
-++|+++++. ..|.......|+.
T Consensus 231 EE~G~P~qvf--------~nP~S~RlkqFls 253 (256)
T COG4598 231 EEEGPPEQVF--------GNPQSPRLKQFLS 253 (256)
T ss_pred cccCChHHHh--------cCCCCHHHHHHHH
Confidence 9999999873 3455444444443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=307.17 Aligned_cols=186 Identities=23% Similarity=0.311 Sum_probs=152.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+++.+|++||+.++..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999988 9999999998764321 2469999999888899999999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+.. ..+.+++++++++.+||++..+. .+..||||||||+
T Consensus 114 ~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl 154 (233)
T PRK11629 114 IGKKK----------------------------------PAEINSRALEMLAAVGLEHRANH-----RPSELSGGERQRV 154 (233)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 32110 00112346778999999876663 4567999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
+||||++.+|+++||||||+|||+.++..+.+.|+++.+. ++++|++++|+.+++.. +|++++|++|++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999986543 34566778899888766 579999999999988764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=315.06 Aligned_cols=190 Identities=21% Similarity=0.338 Sum_probs=157.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeecccc-CCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHD-NHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ ..++..||+|||.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999998 999999999885432 245799999996 36778899999998654321
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++..++++++++.+||++..+ +.+..||||||||++||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP----------------------------------HEEMKERVNEALELVGMQDFKE-----REPARLSGGQKQRVAIA 152 (279)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHhHhh-----CCcccCCHHHHHHHHHH
Confidence 10 0112334678899999987766 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++|+|||||+|||+.++..+++.|+++++. .+++|++++|+.+++ ..||++++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999987543 345667788998888 589999999999999999988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=321.07 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=162.1
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc----cCCc---c---c-ccceEEEec
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY----PKKH---E---T-FARISGYCE 784 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~-~~~~~~~v~ 784 (1262)
+...+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|. +... . . .++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 45899999995 2211 1 1 125799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000838 785 QNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 864 (1262)
Q Consensus 785 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ 864 (1262)
|++.++|.+||.||+.++...+ ..+.++++++++++++.+||.+..+..+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 2334555667899999999998877764 4799999999999999999999
Q ss_pred CcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 865 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 865 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+..|++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI 235 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRI 235 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 99999999999999999999999999765 899999999976 567788885
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=326.51 Aligned_cols=194 Identities=23% Similarity=0.409 Sum_probs=161.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++||+|++.+++.+||+||+.++.....
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~- 106 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR- 106 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc-
Confidence 47999999999999999999999998 999999999876533 24679999999988889999999998642110
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
..+.. ...+.+++++++++.+||.+..+ +.++.||||||||++|||
T Consensus 107 -~~~~~----------------------------~~~~~~~~v~~~le~vgl~~~~~-----~~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 107 -SRFDT----------------------------WTETDRAAVERAMERTGVAQFAD-----RPVTSLSGGERQRVLLAR 152 (402)
T ss_pred -ccccC----------------------------CCHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHH
Confidence 00000 00112345788899999988776 445689999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||+++|++|+|||||+|||+.++.++++.|+++++ . +++|++++|+.+++.++|||+++|++|++++.|+++++.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999864 3 456777999999999999999999999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=313.13 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=163.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 66888888774210 001359999999999999999999999999999999999876 45899999998753
Q ss_pred c-------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000838 773 H-------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 842 (1262)
Q Consensus 773 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 842 (1262)
. ..+++.++|++|++ .+++ .|++||+.+..... ..+.++.++.++++++.++|.+ ..++. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999996 3444 69999998764332 1233444556788999999973 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+++
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 216 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVY 216 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999877899999999975 4556678753
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=309.53 Aligned_cols=203 Identities=29% Similarity=0.403 Sum_probs=165.3
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 45778887663 3469999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAW-LRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ...++.++|++|++.+++.+|+.||+.+... .+........+..+++.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 2334568999999877788999999987531 110000111223446788999999987777654 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|+++
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 208 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVV 208 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999877899999999986 5667788753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=305.58 Aligned_cols=196 Identities=26% Similarity=0.286 Sum_probs=159.1
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677877663 2469999999999999999999999999999999999876 458999999987532
Q ss_pred c----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHH
Q 000838 774 E----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE-LNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 774 ~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSgG 848 (1262)
. ..++.++|++|++.+++.+|+.||+.+....+. .. .++..+++++.++ +.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124579999999999999999999988654321 11 1223566777776 45555554 4579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+++
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~ 203 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYY 203 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999998864 899999999975 4555677753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.22 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=162.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887763 246999999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+..+.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87632 234567999999988887 6999999876543311 1223344567889999998643211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~ 216 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTA 216 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEE
Confidence 799999999999999999999999999999999999999999999985 4799999999986 4667788854
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=311.53 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=157.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999988 999999998875421 245799999999889999999999875321
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.. ..+. .. .. ....+.+++++++++.+||.+..+ +.+..|||||||||+
T Consensus 107 ~~--~~~~---~~------~~---------------~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 107 YK--PTWR---SL------LG---------------RFSEEDKERALSALERVGLADKAY-----QRADQLSGGQQQRVA 155 (243)
T ss_pred cc--cchh---hh------hc---------------cccHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHH
Confidence 00 0000 00 00 000112335677899999987666 445679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999987543 345677789999999999999999999999999987764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=304.99 Aligned_cols=185 Identities=25% Similarity=0.376 Sum_probs=154.4
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCHHHHHH
Q 000838 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLA 800 (1262)
Q Consensus 721 l~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 800 (1262)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764321 12489999999999999999998
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHH
Q 000838 801 FSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 880 (1262)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~ 880 (1262)
+...... ...+.++.++.++++++.+|+.+..++.+ .+||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7632111 12233444556789999999987777653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 881 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 881 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+.+.|++++++ |+|||++||++. ++.+..|+++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~ 186 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVV 186 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 9999999998765 899999999975 4666788753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=304.39 Aligned_cols=190 Identities=29% Similarity=0.369 Sum_probs=158.2
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEec-CCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH--ETFARISGYCE-QNDIHSPF 792 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ 792 (1262)
+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999876 458999999976422 23456789997 55677788
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 872 (1262)
+|++|++.+....+. ...++.++.++++++.+|+.+..++.+ ..||||||||++||+||+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654432 223344456788999999988777764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 873 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 873 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+.+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 225 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVL 225 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999999999998765 899999999975 4556677643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=309.40 Aligned_cols=179 Identities=21% Similarity=0.228 Sum_probs=133.8
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
+..+.+.++++.+... .-.++.+++..++.-+..+++|+||+||||++|++.|... +..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 4567788887665421 1157899999999999999999999999999999999665 3456665543
Q ss_pred cCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHH
Q 000838 770 PKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 770 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgG 848 (1262)
+.+++|-.|..+-+-.+.|.+- .+....+ ++..+ +.+++-+..+||... +... +.+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKTE----EEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCCH----HHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 4568898887655444444432 2222222 22222 236778889999753 2222 4579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 904 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 904 (1262)
||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +..||++|||.
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~ 539 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE 539 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH
Confidence 999999999999999999999999999999999999888775 45799999984
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=293.52 Aligned_cols=178 Identities=58% Similarity=0.912 Sum_probs=150.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++... .++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 467889988774210 12469999999999999999999999999999999999743224689999999876
Q ss_pred CcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 34456799999999899999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++.++.+.+|+.+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEE
Confidence 99999999999999999999999999999999999999887799999999998755677788753
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=313.24 Aligned_cols=192 Identities=20% Similarity=0.335 Sum_probs=158.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999988 999999998875422 235699999998888999999999886431
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
... ++ ..+.+..+.++++.+||.+..+. .+..||||||||++
T Consensus 112 ~~~---~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~ 153 (269)
T PRK11831 112 HTQ---LP------------------------------APLLHSTVMMKLEAVGLRGAAKL-----MPSELSGGMARRAA 153 (269)
T ss_pred ccC---CC------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 100 00 00112345678999999887764 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987543 3456777899999999999999999999999999987653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=314.45 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=166.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-C-eeEEEEEECCc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGSIKISGY 769 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~-~-~~~G~i~~~g~ 769 (1262)
.+.++|+++.+... .+...+|+||||++++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 36788998877421 1125699999999999999999999999999999999997652 1 36899999998
Q ss_pred cCCc---cc----ccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc---ccccc
Q 000838 770 PKKH---ET----FARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL---RQSLV 837 (1262)
Q Consensus 770 ~~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~ 837 (1262)
++.. .. +++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+. .+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 7632 11 224699999998 47888999998876543321 22445556778999999999753 3333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 838 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+.+|||||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ .|.|+|++|||.+ .+.+..|++
T Consensus 151 ----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri 224 (326)
T PRK11022 151 ----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKI 224 (326)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 468999999999999999999999999999999999999999999999976 4899999999976 355677874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=310.63 Aligned_cols=201 Identities=29% Similarity=0.350 Sum_probs=165.0
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. +.+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 46788887763 12358999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 773 H-----ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
. ...++.++|++|++. .+...||.||+.+..... ....++.++++.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 333479999998764321 2233444566889999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~ 208 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVY 208 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 4556778753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=324.42 Aligned_cols=186 Identities=26% Similarity=0.407 Sum_probs=152.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+..+.. ++++++||+|++.+++ -|+||||.++....
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~-- 422 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDA-- 422 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcC--
Confidence 37999999999999999999999998 999999999876654 5689999999997664 69999999854210
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCC------cccccccccCCcccccccccch
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGL------DNCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqkq 151 (1262)
. ++.+.++++..|| ++..||.+|+ ..++|||||+|
T Consensus 423 --s------------------------------------~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~Q 463 (559)
T COG4988 423 --S------------------------------------DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQ 463 (559)
T ss_pred --C------------------------------------HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHH
Confidence 0 1112233333333 4567899985 56789999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||++||||+.+++++++||||++||.++.+.|.+.|.++++ + +++++++|. .+....+|+|++|++|++++.|.++
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~-ktvl~itHr-l~~~~~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--Q-KTVLVITHR-LEDAADADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--C-CeEEEEEcC-hHHHhcCCEEEEecCCceeccCCHH
Confidence 99999999999999999999999999999999999998754 3 455557775 4566789999999999999999999
Q ss_pred hHHH
Q 000838 232 LVLE 235 (1262)
Q Consensus 232 ~~~~ 235 (1262)
++.+
T Consensus 540 ~L~~ 543 (559)
T COG4988 540 ELSE 543 (559)
T ss_pred HHhh
Confidence 8853
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=314.43 Aligned_cols=211 Identities=24% Similarity=0.251 Sum_probs=169.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 578899998875321000 00123579999999999999999999999999999999999876 3589999999876
Q ss_pred Cc------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000838 772 KH------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 842 (1262)
.. ..+++.++||+|++ .+.|.+|+.+++........ .....+.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 57888999999987544321 2344455667899999999963 44554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.+||||||||++|||||+.+|++|++||||++||..++..+++.|+++.++ |.|+|++|||.+ .+.+..|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv 225 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEV 225 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEE
Confidence 579999999999999999999999999999999999999999999999765 999999999975 345567774
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=307.92 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=163.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999998773 24699999999999999999999999999999999997653 13689999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL----RQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 839 (1262)
.+... ..+++.++|++|++.+++. |+.||+.+....+.. .......+++++++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2345679999999888874 999999986543321 11223334567889999999642 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v 232 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRT 232 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEE
Confidence 457999999999999999999999999999999999999999999999865 789999999975 455666775
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=302.60 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=153.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++......
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-- 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-- 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--
Confidence 47999999999999999999999988 999999999875432 245799999999889999999999875421100
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
. ..+.+++++++++.+||++..++ .+..||||||||++|||||
T Consensus 101 ~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 101 L--------------------------------TAEDRQAIEVALARVGLAGLEKR-----LPGELSGGERQRVALARVL 143 (211)
T ss_pred c--------------------------------cHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHH
Confidence 0 00112346778999999877664 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+|++++|+..++.+.||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999987543 2456677899999999999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=306.92 Aligned_cols=211 Identities=22% Similarity=0.256 Sum_probs=168.0
Q ss_pred CCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEE
Q 000838 687 PFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGS 763 (1262)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~ 763 (1262)
|.....+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 34455789999998773 24699999999999999999999999999999999997643 146899
Q ss_pred EEECCccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 000838 764 IKISGYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838 (1262)
Q Consensus 764 i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 838 (1262)
|.++|.+... ...++.++|++|++.+++ .|+.||+.+..... .....+..++++.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 134567999999988887 69999998864322 111233445567889999998642211111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|++.
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~ 233 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTA 233 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEE
Confidence 1246899999999999999999999999999999999999999999999985 4799999999986 5677788753
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=293.17 Aligned_cols=179 Identities=50% Similarity=0.819 Sum_probs=152.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCC--CCCeeEEEEEECCc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGSIKISGY 769 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 769 (1262)
.+.++|+++.++... ....+.+++|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 477899988874210 001246999999999999999999999999999999999987 5 46899999998
Q ss_pred cCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 770 PKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 770 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
+......++.++|++|++.+++.+|+.||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8654445678999999999889999999997642100 499999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|+++
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE
Confidence 9999999999999999999999999999999999999999877799999999999767777888753
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=306.03 Aligned_cols=191 Identities=23% Similarity=0.349 Sum_probs=156.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc--ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... ..+.++|++|++.+++.+|++||+.+....++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 47999999999999999999999988 999999998875432 1247999999988888999999998765432110
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+..+.++++++.+||++..++ .+..||||||||++||||
T Consensus 106 ----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 106 ----------------------------------RAEARERIAALLARLGLAERADD-----KVRELNGGHRRRVEIARA 146 (236)
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHH
Confidence 00112345678899999877664 445799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+.+|++++|||||+|||+.++..+.+.|+++++.. +.++++++|+.+++.. ||++++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999999999875433 4567778899888864 99999999999999998876643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=316.34 Aligned_cols=190 Identities=19% Similarity=0.283 Sum_probs=156.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeecccc--CCCCCCCHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHD--NHIGEMTVRETLAFS 71 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999998 99999999987532 1246799999985 3444 5999999986
Q ss_pred HhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccc
Q 000838 72 ARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 150 (1262)
....+.. ..+..++++++++.+||. +..+ ..+..||||||
T Consensus 111 ~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMS-----QSPFQMSGGQM 151 (286)
T ss_pred HHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHH
Confidence 5422110 011233467789999996 5555 45668999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||++|||||+.+|++++|||||+|||+.++.++.+.|+++.+. .+++|++++|+.+++.+.|||+++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987543 356777799999999999999999999999999998
Q ss_pred chHH
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~~~ 234 (1262)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 8764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=302.93 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=165.5
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677777663 2469999999999999999999999999999999999876 458999999987643
Q ss_pred c-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 774 E-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 774 ~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234679999999999999999999987654321 222333456788999999987777653 4799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i 201 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRI 201 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEE
Confidence 99999999999999999999999999999999999998765 899999999975 456677875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=338.52 Aligned_cols=206 Identities=22% Similarity=0.275 Sum_probs=170.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 477889988763 3469999999999999999999999999999999999876433589999999876
Q ss_pred Ccc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KHE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
... ..++.+||++|++.+++.+||+||+.+....+.....+.+..+++++++++.+++.+..++.+ .+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 234669999999989999999999988643321111123344556889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.+..|+++
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~ 214 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTIC 214 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4556677743
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=305.15 Aligned_cols=189 Identities=24% Similarity=0.288 Sum_probs=154.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+.++.......
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~-- 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPD-- 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccC--
Confidence 47999999999999999999999988 9999999998764322 2489999998999999999998863210000
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
. ...+.+++++++++.+||++..++ .+..||||||||++|||||+
T Consensus 86 ~------------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 L------------------------------SKSERRAIVEEHIALVGLTEAADK-----RPGQLSGGMKQRVAIARALS 130 (230)
T ss_pred C------------------------------CHHHHHHHHHHHHHHcCCHHHHcC-----ChhhCCHHHHHHHHHHHHHH
Confidence 0 000112346778999999877664 45679999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
.+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|+.+++.+.||++++|++|+++..|+..+
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999999999999999999999987543 34567778999999999999999999999998886554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.27 Aligned_cols=196 Identities=28% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 467888887763 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.++|++|++.+++ .|+.||+.+....+ . . .+.+++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988876 69999998753321 1 1 123477899999996 455554 457999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+++
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~ 203 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTA 203 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999998764 899999999975 4566778753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=304.71 Aligned_cols=207 Identities=21% Similarity=0.261 Sum_probs=164.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 577899988763 2469999999999999999999999999999999999864 21 2579999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ..+..+.+++++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87532 2346779999999999999999999987643321 11223334567889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|+++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTA 218 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEE
Confidence 7999999999999999999999999999999999999999999999975 689999999975 4567788753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=301.49 Aligned_cols=183 Identities=27% Similarity=0.417 Sum_probs=152.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999988 99999999886421 124579999999988889999999987642
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
... + ...+++++++++.+||++..+ +.+..||||||||+
T Consensus 102 ~~~-----~-------------------------------~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 140 (214)
T cd03297 102 RKR-----N-------------------------------REDRISVDELLDLLGLDHLLN-----RYPAQLSGGEKQRV 140 (214)
T ss_pred hCC-----H-------------------------------HHHHHHHHHHHHHcCCHhHhh-----cCcccCCHHHHHHH
Confidence 110 0 001224567899999987665 44567999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|++++|+.+++...||++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876432 456777899999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=304.54 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=161.4
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEECCccC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGSIKISGYPK 771 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 771 (1262)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 45778887763 24699999999999999999999999999999999997532 24689999999876
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+...... ...+..||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 42 234567999999998887 699999988654332111 12233455788999999953211111 1124579999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+..|+.
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i 211 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYT 211 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEE
Confidence 99999999999999999999999999999999999999999864 899999999975 455667764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=347.86 Aligned_cols=192 Identities=24% Similarity=0.420 Sum_probs=158.6
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+||||||||||||.+.+|-+.++|+ +|.|.+||.|+++.+. |+++|.|.|||.+| +.|+||||.||.+ + .
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~~-~-v- 1091 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGSE-E-V- 1091 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccCC-C-C-
Confidence 7999999999999999999999998 9999999999988765 57899999999887 5699999999821 1 1
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+.+.++++ .++.-=-..+|++.+||.||++.. +||||||||++||||
T Consensus 1092 -s~~eIi~Aak-----------------------------~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1092 -SEEEIIEAAK-----------------------------LANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARA 1140 (1228)
T ss_pred -CHHHHHHHHH-----------------------------HhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHH
Confidence 1111222211 122223356799999999997655 799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
++.||+||||||.||+||+++.+-|.+.|.+.. .++|+|+ +.| +....+.||.|+|+++|+|+++|+++++.+
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~Iv-IAH-RLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIV-IAH-RLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEE-Eec-chhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999998853 4667666 445 455778999999999999999999999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=317.66 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=160.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeecccc--CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHD--NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1262)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .+.|.+||.+++.+..
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999987 999999999876432 245799999997 5888999999998765
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkq 151 (1262)
..... . ...+.++++.++++.+||.+ .++ ++++.|||||||
T Consensus 120 ~~~~~-~--------------------------------~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~LSgGq~Q 161 (327)
T PRK11308 120 LINTS-L--------------------------------SAAERREKALAMMAKVGLRPEHYD-----RYPHMFSGGQRQ 161 (327)
T ss_pred HHccC-C--------------------------------CHHHHHHHHHHHHHHCCCChHHhc-----CCCccCCHHHHH
Confidence 43210 0 00112345778899999963 455 566789999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+|||||+.+|++|++||||+|||..++.++++.|+++.+. .+++++++||+...+.+.||+|++|++|++++.|+.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987543 3567778999999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 241 ~~~ 243 (327)
T PRK11308 241 QIF 243 (327)
T ss_pred HHh
Confidence 775
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=318.15 Aligned_cols=199 Identities=21% Similarity=0.221 Sum_probs=162.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeecccc--CCCCCCCHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHD--NHIGEMTVRETLAFS 71 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTv~e~l~f~ 71 (1262)
+++|+|+||||||||+++|+|+++|+...+|+|.++|.++..... ++.++||+|++ .+.|.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 479999999999999999999998742238999999998865321 24799999997 688999999999876
Q ss_pred HhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccch
Q 000838 72 ARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.. . ...+..+++.++++.+||++..+. . ++++++|||||||
T Consensus 124 ~~~~~~-~--------------------------------~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~Q 168 (330)
T PRK09473 124 LMLHKG-M--------------------------------SKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQ 168 (330)
T ss_pred HHHhcC-C--------------------------------CHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHH
Confidence 533210 0 001123456778999999764332 2 3678899999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+|||||+.+|+++++||||+|||+.++.++++.|+++.+. .++++++++|+...+.+++|+|++|++|++++.|+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987653 3567788999999999999999999999999999998
Q ss_pred hHHH
Q 000838 232 LVLE 235 (1262)
Q Consensus 232 ~~~~ 235 (1262)
++.+
T Consensus 248 ~i~~ 251 (330)
T PRK09473 248 DVFY 251 (330)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=307.53 Aligned_cols=201 Identities=23% Similarity=0.261 Sum_probs=162.4
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 767 (1262)
..+.++|+++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4688999988773 24699999999999999999999999999999999997542 1358999999
Q ss_pred CccCC-----cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000838 768 GYPKK-----HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVG 838 (1262)
Q Consensus 768 g~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 838 (1262)
|.+.. ...+++.++|++|++.+++ .||+||+.+....+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234567999999998887 499999988654331 111 23345677888888743 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|+.+
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~ 224 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTA 224 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEE
Confidence 457999999999999999999999999999999999999999999999854 789999999975 5667788753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=313.25 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=168.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYP 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 770 (1262)
.+.++|++..+... .+...+++||||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 57899998877421 12356999999999999999999999999999999999987631 138999999987
Q ss_pred CCc---cc---c-cceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000838 771 KKH---ET---F-ARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPG 841 (1262)
Q Consensus 771 ~~~---~~---~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 841 (1262)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+.. . ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 632 11 2 24799999998 67889999999987654432 234455556788999999997533221 1 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+.+||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.+..|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri 232 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKV 232 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEE
Confidence 5689999999999999999999999999999999999999999999999765 899999999986 455677874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.01 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=163.6
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC------eeEEEEEE
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGSIKI 766 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~------~~~G~i~~ 766 (1262)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 46788887663 346999999999999999999999999999999999986532 12799999
Q ss_pred CCccCCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 767 SGYPKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 767 ~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
+|.+... ..+++.++|++|++..++.+|+.||+.+....... ......+.++.++++++.+|+.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23455689999998766679999999875321110 0111123345678899999998776655 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHh
Q 000838 843 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESF 912 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~f 912 (1262)
..||||||||++|||||+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999999776 899999999975 466678
Q ss_pred hhhc
Q 000838 913 DEAI 916 (1262)
Q Consensus 913 d~~~ 916 (1262)
|+.+
T Consensus 223 d~i~ 226 (272)
T PRK13547 223 DRIA 226 (272)
T ss_pred CEEE
Confidence 8753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=309.19 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=157.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----------cccceEEeeccccCCCCCCCHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----------VPQRTAAYISQHDNHIGEMTVRETLA 69 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~lTv~e~l~ 69 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999988 99999999887532 12457999999998888899999998
Q ss_pred HHHhc-cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccc
Q 000838 70 FSARC-QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGG 148 (1262)
Q Consensus 70 f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 148 (1262)
++... ++. . .++..+.+.++++.+||++..| ..+++||||
T Consensus 108 ~~~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G 148 (250)
T PRK11264 108 EGPVIVKGE--P--------------------------------KEEATARARELLAKVGLAGKET-----SYPRRLSGG 148 (250)
T ss_pred HHHHHhcCC--C--------------------------------HHHHHHHHHHHHHHcCCcchhh-----CChhhCChH
Confidence 85421 110 0 0012234667889999987665 445689999
Q ss_pred cchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 149 QKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 149 qkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.++||++++|++|++++.|
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998753 3 456677899999999999999999999999999
Q ss_pred CcchHH
Q 000838 229 PRELVL 234 (1262)
Q Consensus 229 ~~~~~~ 234 (1262)
+++++.
T Consensus 227 ~~~~~~ 232 (250)
T PRK11264 227 PAKALF 232 (250)
T ss_pred CHHHHh
Confidence 987653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=307.27 Aligned_cols=190 Identities=19% Similarity=0.335 Sum_probs=157.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHhc-
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARC- 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~- 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999988 99999999987542 1245799999999888899999999885421
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+..+.+.++++.+||++..+ +.++.||||||||++
T Consensus 106 ~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 106 RGAS----------------------------------KEEAEKQARELLAKVGLAERAH-----HYPSELSGGQQQRVA 146 (240)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChHHHh-----cChhhcCHHHHHHHH
Confidence 1100 0011234677899999987666 445679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++...||++++|++|++++.|+.+++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999998643 3 456777899999999999999999999999999887653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=319.04 Aligned_cols=180 Identities=24% Similarity=0.356 Sum_probs=155.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEecCCCCCCCCCCH
Q 000838 723 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-------ETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 723 ~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCC
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 875 (1262)
+||+.|+.... ...+.+++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12234456889999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 876 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 876 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|+.++..+.+.|++++++ |+|||++||++. ++....|++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i 202 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRV 202 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEE
Confidence 999999999999999865 899999999985 566778874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=310.85 Aligned_cols=190 Identities=25% Similarity=0.356 Sum_probs=157.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeecccc-CCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHD-NHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++ ..++..||.||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999998 999999999886432 245799999997 36777899999998654321
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. ..+.+++++++++.+||++..++ .+..|||||||||+||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~la 152 (279)
T PRK13635 112 VP----------------------------------REEMVERVDQALRQVGMEDFLNR-----EPHRLSGGQKQRVAIA 152 (279)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----CcccCCHHHHHHHHHH
Confidence 10 01123346788999999887764 4557999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+++.|+++++ ..+++|++++|+.+++. .||++++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999998754 33566777889988886 59999999999999999987764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=306.98 Aligned_cols=186 Identities=25% Similarity=0.354 Sum_probs=154.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+||+||+.++...++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999988 99999999987542 245899999998888899999998865322110
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
..+..++++++++.+||.+..+ +.+..||||||||++|||||+
T Consensus 102 --------------------------------~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 --------------------------------KMQRLEIAHQMLKKVGLEGAEK-----RYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred --------------------------------HHHHHHHHHHHHHHcCChhHhh-----CChhhCCHHHHHHHHHHHHHh
Confidence 0011234677899999987665 345679999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEec--CCeEEEecCcc
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLS--DGQIVYQGPRE 231 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~--~G~i~~~G~~~ 231 (1262)
.+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+++...||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999864433 4566778999999999999999998 59999887754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=299.73 Aligned_cols=196 Identities=23% Similarity=0.337 Sum_probs=160.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 578899987763 2469999999999999999999999999999999999866 4589999999865
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 847 (1262)
.. ..+++.++|++|++.+++ .|+.||+.+....+.. .. .++.++++++.+++. ...++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567899999988887 5999999875443221 11 123467899999996 345554 457999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||++.. + +..|+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i 207 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKV 207 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEE
Confidence 9999999999999999999999999999999999999999998764 8999999999863 3 456664
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=301.79 Aligned_cols=180 Identities=24% Similarity=0.367 Sum_probs=149.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999988 999999999875432 245799999999899999999999986543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++.. .++.+++++++++.+||++..++ .+.+||||||||++
T Consensus 106 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~ 146 (214)
T cd03292 106 TGVP----------------------------------PREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVA 146 (214)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHH
Confidence 2110 00112345678999999876664 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998643 3 45677789999999999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=300.83 Aligned_cols=186 Identities=27% Similarity=0.377 Sum_probs=158.0
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEecCCCCCCCCCCHHHH
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVTVHES 798 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 798 (1262)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 458999999987643 1234679999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHH
Q 000838 799 LAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878 (1262)
Q Consensus 799 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~ 878 (1262)
+.+..... .....+.++.+.++++.+||.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777664 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 879 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 879 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
++..+.+.|++++++ |+|+|++||++. ++.+.+|+.+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~ 201 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVA 201 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999998765 899999999975 4566778753
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=318.00 Aligned_cols=176 Identities=23% Similarity=0.353 Sum_probs=153.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEecCCCCCCCCCCH
Q 000838 723 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-------ETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 723 ~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCC
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 875 (1262)
+||+.|... ...+++++++++.+||.+..++.+ .+||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 112345789999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 876 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 876 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|+.++..+.+.|+++.++ |+|+|++||++. ++....|++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i 199 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRV 199 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEE
Confidence 999999999999999765 899999999985 677788874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=318.42 Aligned_cols=191 Identities=23% Similarity=0.363 Sum_probs=155.3
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
+||+|+|||||||+||+|.++.+ . +|+|.+||.++.+.. .|+.||||||+..+| +.||.+||.+|..-
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~s---- 451 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPS---- 451 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCC----
Confidence 79999999999999999999998 4 899999999986554 367899999988666 56999999997532
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..++.+.+.|++... .+ -...+++.++|.||+++ ..|||||||||+||||
T Consensus 452 as~eeV~e~~k~a~~---------------------------hd--~i~~l~~GY~T~VGerG-~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 452 ASDEEVVEACKRAGL---------------------------HD--VISRLPDGYQTLVGERG-LMLSGGEKQRVSLARA 501 (591)
T ss_pred cCHHHHHHHHHHcCc---------------------------HH--HHHhccccchhhHhhcc-cccccchHHHHHHHHH
Confidence 234444444443211 11 13458899999999754 4699999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
++.||+|+++|||||+||+++.+++++.+.+. ..++|+| ++-|+. .....||+|++|++|++.+.|++++++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI-~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVI-MIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEE-EEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999873 3445554 566654 4667899999999999999999999875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=313.56 Aligned_cols=209 Identities=17% Similarity=0.193 Sum_probs=164.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEECCc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGSIKISGY 769 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 769 (1262)
.+.++|+++.+... .+...+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36788998887431 1235699999999999999999999999999999999997642 246899999998
Q ss_pred cCCc---cc----ccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHcCCccc---cc
Q 000838 770 PKKH---ET----FARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPE---VDSETRKMFIEEIMELVELNPL---RQ 834 (1262)
Q Consensus 770 ~~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~---~~ 834 (1262)
++.. .. +++.++||+|++. +.|.+||.+++........... ....+.++++.++++.+||.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7532 11 2357999999975 5788999999976432111000 1112345568899999999753 23
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhh
Q 000838 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFD 913 (1262)
Q Consensus 835 ~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd 913 (1262)
.. +.+|||||||||+|||||+.+|++|++||||+|||+.++..+.+.|+++.++ |.|||++|||.+ .+.+..|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 4589999999999999999999999999999999999999999999999875 999999999975 4556778
Q ss_pred hh
Q 000838 914 EA 915 (1262)
Q Consensus 914 ~~ 915 (1262)
++
T Consensus 228 ri 229 (330)
T PRK15093 228 KI 229 (330)
T ss_pred EE
Confidence 74
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=297.50 Aligned_cols=179 Identities=25% Similarity=0.355 Sum_probs=151.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEecCCCCCCCCCCH
Q 000838 723 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-------ETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 723 ~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 458999999976531 1235679999999999989999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCC
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 875 (1262)
.||+.+..... .....+++++++++.+|+.+..+.. +..||||||||++||+||+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233445678899999998766665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 876 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 876 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|+.+++.+.+.|++++++ |+|||++||++. ++.+..|++
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i 202 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRI 202 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEE
Confidence 999999999999999765 899999999975 355566764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=311.11 Aligned_cols=206 Identities=21% Similarity=0.304 Sum_probs=164.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++... .....+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 578999998774210 001358999999999999999999999999999999999876 4589999999875
Q ss_pred C--------cccccceEEEecCCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000838 772 K--------HETFARISGYCEQNDIH-SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPG 841 (1262)
Q Consensus 772 ~--------~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 841 (1262)
. ...+++.++|++|++.. +...|++||+.+..... ....+...+.++++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22369999998864321 123334445678899999994 555654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.+|+++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~ 222 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVI 222 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999975 5667788753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=306.66 Aligned_cols=180 Identities=21% Similarity=0.298 Sum_probs=152.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++.. . .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~---~ 109 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLK--G---Q 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhccc--c---h
Confidence 47999999999999999999999988 9999999977642 24579999999988888999999987421 0 0
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
.+.+++++++.+||.+..+ +.+..||||||||++|||+|+
T Consensus 110 -----------------------------------~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 110 -----------------------------------WRDAALQALAAVGLADRAN-----EWPAALSGGQKQRVALARALI 149 (257)
T ss_pred -----------------------------------HHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHh
Confidence 0123566789999987665 445689999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
.+|+++||||||+|||+.++..+.+.|+++.+.. +.+|++++|+.+++.+.||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999999865433 456677899999999999999999999999988754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=306.53 Aligned_cols=202 Identities=25% Similarity=0.298 Sum_probs=166.3
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~ 72 (269)
T PRK13648 6 SIIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQA 72 (269)
T ss_pred ceEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 35788999887631 12358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ...++.++|++|++. +++..|+.+|+.+..... ....+..++.++++++.+++.+..+.. +..||
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 144 (269)
T PRK13648 73 ITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALS 144 (269)
T ss_pred CCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCC
Confidence 532 234567999999974 677789999998864322 123344455678899999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++.. +. ..|++
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i 212 (269)
T PRK13648 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHV 212 (269)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEE
Confidence 99999999999999999999999999999999999999999998765 8999999999863 43 37774
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=297.60 Aligned_cols=207 Identities=23% Similarity=0.268 Sum_probs=161.7
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECC--c-
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG--Y- 769 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g--~- 769 (1262)
+.++|+++.+..... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 457888877742100 0012469999999999999999999999999999999999876 3579999984 2
Q ss_pred -cCCc---cc----ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000838 770 -PKKH---ET----FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSLVGLP 840 (1262)
Q Consensus 770 -~~~~---~~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 840 (1262)
+... .. .++.++|++|++.+++.+|+.|++.+..... ....+..++.+.++++.+|+.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 2356899999999999999999998754322 12333344567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+....|+.+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~ 220 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVM 220 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeE
Confidence 4579999999999999999999999999999999999999999999999877999999999953 3445666543
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=306.96 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=166.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++++..+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3678999987742110 000012469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCC
Q 000838 772 KH---ETFARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVNGL 845 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~l 845 (1262)
.. ...++.++|++|++. +.+.+|+.|++.+...... .......++.++++++.+|+. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456999999975 5677899999987654321 123334445688999999994 455544 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++...+|+++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~ 221 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVL 221 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5666778753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.60 Aligned_cols=191 Identities=24% Similarity=0.333 Sum_probs=157.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--C---cccceEEeeccccC-CCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE--F---VPQRTAAYISQHDN-HIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999988 9999999998741 1 12457999999863 34567999999886532
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+..++++++++.+||.+..+ +.++.||||||||++
T Consensus 111 ~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 111 LKLP----------------------------------EDEVRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVA 151 (283)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHCCChhhhh-----CCcccCCHHHHHHHH
Confidence 2110 0111234677899999988766 456679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++...|||+++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987643 2456777899999999999999999999999999988765
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=302.21 Aligned_cols=181 Identities=22% Similarity=0.339 Sum_probs=147.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999988 9999999998754321 2469999999888889999999998653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.+... ..+..+.+.++++.+||++..+ +.+..|||||||||
T Consensus 110 ~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv 150 (221)
T TIGR02211 110 IGKKS----------------------------------VKEAKERAYEMLEKVGLEHRIN-----HRPSELSGGERQRV 150 (221)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhh-----CChhhCCHHHHHHH
Confidence 22100 0011234567899999987666 44567999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1262)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++.. +.+|++++|+.+++. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875432 456677888888775 47999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=300.61 Aligned_cols=179 Identities=26% Similarity=0.383 Sum_probs=149.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999988 999999999876432 245799999999888899999999986543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++.. .++.++.++++++.+||++..++ .+..||||||||++
T Consensus 107 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGKK----------------------------------EREIQRRVGAALRQVGLEHKADA-----FPEQLSGGEQQRVA 147 (214)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHH
Confidence 2110 00112346778999999876653 44679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCe
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~ 223 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++..+||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999998643 3 4567778999999999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=301.46 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=162.2
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++. + ..|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 467888887731 1 238999999999999999999999999999999876 45899999998754
Q ss_pred cc-cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 773 HE-TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 773 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..+++++++++.+|+.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 21 22457999999999999999999998753211 111 1233456889999999988777764 479999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|++||||++.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+.+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 201 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSL 201 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999998764 899999999985 4556677753
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=276.11 Aligned_cols=202 Identities=26% Similarity=0.390 Sum_probs=164.9
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++.+|++|+.. ++.+|++||++++|||++||+||||||||||||.|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 45678888874 46799999999999999999999999999999999998763 4899999999864
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
. ....+..+.+||+..+-...||+|-+.++..-... .....+..+.++++|...++.+.+... ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 3 34456678899998887678999999987533211 112223444578899999999887765 34799999
Q ss_pred HHHHHHHHHHhh------CCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||.+||.|++ ++++|+||||||.||..-+..++++.|+++++|..|+++.||.+. .....|+.+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDriv 212 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIV 212 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheee
Confidence 999999999975 345889999999999999999999999999999999999999974 334566643
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=308.40 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=167.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++++++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 4778999988742100 012469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc----ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 772 KH----ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 772 ~~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
.. ...++.+||++|++. .+...|+.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 42 234677999999974 233469999998865432 2233445566889999999988877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++. +. ..|+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~ 215 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRII 215 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999874 33 478753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=312.94 Aligned_cols=190 Identities=22% Similarity=0.339 Sum_probs=155.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccC-CCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDN-HIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+..+||+||+.++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999998 99999999987432 12357999999862 334689999999865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.. .++..++++++++.+||. +..+ +.++.|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGq~q 152 (287)
T PRK13641 112 KNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLIS-----KSPFELSGGQMR 152 (287)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhh-----CCcccCCHHHHH
Confidence 422110 011223467789999996 5555 445679999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998643 3 566777999999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=303.23 Aligned_cols=191 Identities=20% Similarity=0.374 Sum_probs=158.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++.... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 47999999999999999999999988 999999999875432 2357999999998999999999998753210 0
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
.. ..+.+++++++++.+||++..+. .++.||||||||++||||+
T Consensus 101 ~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 101 KL-------------------------------NAAQREKLHAIARQMGIEDLLAR-----LPGQLSGGQRQRVALARCL 144 (232)
T ss_pred CC-------------------------------CHHHHHHHHHHHHHcCcHHHHhC-----CcccCCHHHHHHHHHHHHH
Confidence 00 00112346778999999877764 4557999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++++|||||+|||+.++..+.+.|+++.+.. ++++++++|+.+++.+.||++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999875432 456677899999999999999999999999999987664
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=308.56 Aligned_cols=204 Identities=25% Similarity=0.279 Sum_probs=167.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCe-eEEEEEECCcc
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSIKISGYP 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 770 (1262)
.+.++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 5778999887631 12358999999999999999999999999999999999876321 13999999987
Q ss_pred CCc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ...++.+||++|++. .++..||.||+.|....+ ..+.++.+++++++++.+||.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 567799999998764322 234445556688999999998877765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + +.+|+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~ 214 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVL 214 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEE
Confidence 99999999999999999999999999999999999999999999765 8999999999864 3 5678753
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=320.22 Aligned_cols=199 Identities=26% Similarity=0.422 Sum_probs=165.6
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
+..+..+|+++.++. ++++++|+|+++++|+.++|+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCc
Confidence 445667799988752 2379999999999999999999999999999999999887 46899999998
Q ss_pred cCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccc------cccCC
Q 000838 770 PKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS------LVGLP 840 (1262)
Q Consensus 770 ~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~~~~~ 840 (1262)
+.. ...+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..|+.+..+. .+|.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige- 452 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE- 452 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc-
Confidence 754 4568899999999998876 69999998752 2222 2347788888888765544 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|++++||++. .....|+++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~ 525 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIV 525 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEE
Confidence 4678999999999999999999999999999999999999999999999986 599999999874 455666643
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=290.18 Aligned_cols=183 Identities=20% Similarity=0.275 Sum_probs=152.9
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++++. ++.+++ +|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 46788887763 234555 999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000838 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852 (1262)
Q Consensus 773 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 852 (1262)
... ++.++|++|++..++.+|+.||+.+...... ..+.++++++.+++.+..++. ++.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 3458999999888888999999987543221 123467888999998776665 34799999999
Q ss_pred HHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 853 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
++||||++.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877667899999999975
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=315.65 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=159.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC-ceeEEEEECCccCCCCcc-------cceEEeecccc--CCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL-KVSGRVTYNGHNMGEFVP-------QRTAAYISQHD--NHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~-~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTv~e~l~f 70 (1262)
+++|+||||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++ .+.|.+||.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999997421 138999999998764321 23699999997 47889999999877
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
....... . ...+.++++.++++.+||.+..+ .-++++++||||||
T Consensus 115 ~l~~~~~-~--------------------------------~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~ 159 (326)
T PRK11022 115 AIKVHQG-G--------------------------------NKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHhcC-C--------------------------------CHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHH
Confidence 5432110 0 00122345778899999975321 11256788999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
|||+|||||+.+|++|++||||+|||+.++.++++.|+++.+. .+.+++++||+...+.+.+|||++|++|++++.|++
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~ 238 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKA 238 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 345677899999999999999999999999999999
Q ss_pred chHH
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~~~ 234 (1262)
+++.
T Consensus 239 ~~~~ 242 (326)
T PRK11022 239 HDIF 242 (326)
T ss_pred HHHh
Confidence 8875
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=269.45 Aligned_cols=188 Identities=23% Similarity=0.343 Sum_probs=160.9
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEecCCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPF 792 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 792 (1262)
++..+|+++|+.+++||..+|.||||||||||+|+++.... +++|.+++.|++.+. +.+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 45679999999999999999999999999999999999887 468999999998643 567889999999999998
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 872 (1262)
-||++|+.|.-.+|... .+ +......++.+++.+..-++ .+.+||||||||++|+|.|..-|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr-~d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRR-PD----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccC-CC----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 59999999998777533 22 23356788899987653222 24579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 873 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 873 sgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|.||+.+++.|-++|.++. ++.+.++.+|||+.. -...+|+.+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~i 205 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVI 205 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEE
Confidence 9999999999999999987 568999999999874 456888865
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=297.85 Aligned_cols=186 Identities=20% Similarity=0.339 Sum_probs=154.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-cccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+....... .
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~ 101 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK-L 101 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC-c
Confidence 47999999999999999999999998 99999999987532 2346799999999899999999999875421100 0
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+.+++++++++.+||++..+ +.++.||||||||++|||||
T Consensus 102 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 102 ---------------------------------NAEQQEKVVDAAQQVGIADYLD-----RLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCcHHHhh-----CCcccCCHHHHHHHHHHHHH
Confidence 0001234567899999987666 44567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
+.+|++++|||||+|||+.++..+.+.|+++.+ +++++|++++|+.+++.+.||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998754 334667778999999999999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=283.49 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=170.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
|.+++|||||||||.+++|.|+++|+ +|+|.++|.+++... +.+|||.|.+.-+++.+||.|.|.|-+++++..
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~-- 103 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP-- 103 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCcHHHHHHHHHHhcCCc--
Confidence 57899999999999999999999998 999999999986543 346999999999999999999999999998752
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
.+++++.++.+|+.+++..... +.+++||.|++|++.+-.+++
T Consensus 104 --------------------------------~~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 104 --------------------------------KAEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred --------------------------------HHHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHh
Confidence 2234556788999999988765 566789999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHHHH
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~~~ 237 (1262)
.+|++++||||+|||||.+.+.+-+.+.++. ..+.+|+..+|.++.+.++||++++|++|+.|.+|+.+++++.|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk--~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELK--EEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHH--hcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 9999999999999999999999999998864 34567778999999999999999999999999999999998754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=305.50 Aligned_cols=191 Identities=18% Similarity=0.331 Sum_probs=157.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999988 999999999875432 23579999999988888999999987543211
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
. . ..++.+..++++++.+||.+..+ ..++.||||||||++||
T Consensus 108 ~-~--------------------------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 108 D-L--------------------------------SAEQREDRANELMEEFHIEHLRD-----SMGQSLSGGERRRVEIA 149 (241)
T ss_pred c-c--------------------------------CHHHHHHHHHHHHHHcCCHHHhh-----cchhhCCHHHHHHHHHH
Confidence 0 0 00012234677899999987655 44568999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+.+.++++.+ . +.+|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999999999988643 3 456677889999999999999999999999999887653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=302.01 Aligned_cols=191 Identities=22% Similarity=0.276 Sum_probs=155.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCC----CCceeEEEEECCccCCCCcc-cceEEeeccccC--CCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDS----SLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDN--HIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~----~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+.+|+.||+.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999988 6 9999999998764333 257999999974 5567899999987543
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc---cccccccCCcccccccccc
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN---CADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqk 150 (1262)
..+. . ..+.+++++++++.+||++ ..+ +.+..||||||
T Consensus 91 ~~~~--~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~G~~ 131 (230)
T TIGR02770 91 SLGK--L--------------------------------SKQARALILEALEAVGLPDPEEVLK-----KYPFQLSGGML 131 (230)
T ss_pred HcCc--c--------------------------------HHHHHHHHHHHHHHcCCCchHHHHh-----CChhhcCHHHH
Confidence 2110 0 0011234677899999973 333 45667999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
|||+|||||+.+|+|++|||||+|||+.++..+.+.|+++.+ +.+++|++++|+.+++...+|++++|++|+++..|++
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998754 2345677789999999999999999999999999998
Q ss_pred chHH
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~~~ 234 (1262)
+++.
T Consensus 211 ~~~~ 214 (230)
T TIGR02770 211 KEIF 214 (230)
T ss_pred HHHH
Confidence 7764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=277.29 Aligned_cols=192 Identities=29% Similarity=0.423 Sum_probs=160.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCccc---ceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~---~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
|++|+|||||||||||+.|+|++.|+ +|+|.+||.++++.... +.-+..+|+..+-+..||+|-+.++..-.+.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 58999999999999999999999998 99999999998765432 4568899997777778999999998753321
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
+. +..+..+++++.|...++.+.+. +....|||||||||.+||
T Consensus 106 g~--------------------------------~~~e~~~i~~~ala~~d~~~la~-----R~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GR--------------------------------EPEEDERIAAQALAATDLSGLAG-----RDYRTLSGGEQQRVQLAR 148 (259)
T ss_pred CC--------------------------------CchhhHHHHHHHHHHcChhhhhc-----cchhhcCchHHHHHHHHH
Confidence 10 01123445778888889988765 556789999999999999
Q ss_pred HHhc------CCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 158 MMVG------PALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 158 al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
.|++ ++++||||||||+||...+..++++.+++++. + ..|+.+.||...+..+||||++|++|+++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9975 44589999999999999999999999999874 3 45666889999999999999999999999999998
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
+++
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 875
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=342.97 Aligned_cols=188 Identities=27% Similarity=0.413 Sum_probs=158.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..++++|++++|+. ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 46999999999852 1348999999999999999999999999999999999877 458999999987
Q ss_pred CC--cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000838 771 KK--HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLPG 841 (1262)
Q Consensus 771 ~~--~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 841 (1262)
++ ...+++.++||+|++.+++ -|++||+.++. ++.++ ++++++++..++++. .|+.+|..
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~- 467 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDATD----EELWAALERVGLADWLRSLPDGLDTVLGEG- 467 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCCH----HHHHHHHHHcCCHHHHHhCcccccchhccc-
Confidence 54 3456788999999999886 59999998752 22222 336778887777643 46667653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 904 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 904 (1262)
..+||||||||++||||++++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++
T Consensus 468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 45799999999999999999999999999999999999999999999864 579999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=294.46 Aligned_cols=210 Identities=22% Similarity=0.299 Sum_probs=169.2
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC-C--CeeEEEEEECCc
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYITGSIKISGY 769 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~-~--~~~~G~i~~~g~ 769 (1262)
+.++|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 45788887775431 24579999999999999999999999999999999999765 2 246789999998
Q ss_pred cCC---cc----cccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000838 770 PKK---HE----TFARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840 (1262)
Q Consensus 770 ~~~---~~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 840 (1262)
++- .+ .+.+.+++++|++. +.|.+|+.+.+.-....+.... ..++.++++.++|+.+|+.+-.... +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 642 21 13467999999964 6788999988876655432211 3455677789999999998643221 12
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhh
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.+.+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.++|++|||.. -+.+..|++
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri 224 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRV 224 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceE
Confidence 3678999999999999999999999999999999999999999999999986 5999999999986 377788874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=285.74 Aligned_cols=162 Identities=29% Similarity=0.416 Sum_probs=140.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 4677777653 2358999999999999999999999999999999999876 358999999987542
Q ss_pred --ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000838 774 --ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 774 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 851 (1262)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899998863 8999999
Q ss_pred HHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+..|+.
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i 165 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRV 165 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999877899999999975 455566764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=301.97 Aligned_cols=202 Identities=21% Similarity=0.234 Sum_probs=163.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887763 246999999999999999999999999999999999976431 2579999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....... ....+.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 133567999999998887 8999999886543211 122334456788999998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|+.+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~ 217 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTA 217 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999975 5667788753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=302.79 Aligned_cols=201 Identities=21% Similarity=0.284 Sum_probs=162.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-e--eEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~--~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 577899988763 246999999999999999999999999999999999976532 2 479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....+. ..+..+.++.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654332 1122333455778899888843 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+.
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i 219 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFT 219 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeE
Confidence 457999999999999999999999999999999999999999999999865 699999999975 566677774
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=301.59 Aligned_cols=201 Identities=21% Similarity=0.279 Sum_probs=161.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 467889988763 235999999999999999999999999999999999965321 2579999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87542 134567999999988887 8999999986543211 122334556788888888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|++
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v 215 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKT 215 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEE
Confidence 457999999999999999999999999999999999999999999999854 799999999974 466677775
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=302.33 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=149.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeecccc--CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHD--NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999988 999999999875432 245799999997 4667899999998865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.... .+..+..++++++.++|. +..+ ..+..|||||||
T Consensus 110 ~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~q 152 (228)
T cd03257 110 RIHGKLSK--------------------------------KEARKEAVLLLLVGVGLPEEVLN-----RYPHELSGGQRQ 152 (228)
T ss_pred HhccCCcH--------------------------------HHHHHHHHHHHHHHCCCChhHhh-----CCchhcCHHHHH
Confidence 43211000 000011124678889985 4455 445679999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.+++|++++|+.+++...||++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998754 22456777899999999999999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=300.50 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=150.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999988 999999998875432 245799999998888899999999986543
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. .++..+.++++++.+||.+..+ +.+..||||||||++
T Consensus 107 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 107 AGAS----------------------------------GDDIRRRVSAALDKVGLLDKAK-----NFPIQLSGGEQQRVG 147 (222)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCChhhhh-----CCchhCCHHHHHHHH
Confidence 2110 0011224567889999987665 445679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . ++++++++|+.+++...||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999998643 3 456777999999999999999999999985
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=334.08 Aligned_cols=204 Identities=26% Similarity=0.327 Sum_probs=168.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++++. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367889988763 3469999999999999999999999999999999999876 3589999999875
Q ss_pred Ccc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000838 772 KHE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLA-PEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 772 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 846 (1262)
... ..++.++|++|++.+++.+||+||+.++...+.. ...+..+.+++++++++.+|+.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1245799999999899999999999886432211 11223334456889999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.+.+|+++
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~ 212 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVT 212 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 4666778753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=302.13 Aligned_cols=202 Identities=27% Similarity=0.296 Sum_probs=162.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 477899988763 2469999999999999999999999999999999999732 21 2479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ..+++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87531 234567999999988887 899999988643321 1122333456778899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|+++
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~ 218 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTG 218 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 5667788753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=302.56 Aligned_cols=202 Identities=21% Similarity=0.263 Sum_probs=162.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 578999988763 24699999999999999999999999999999999997642 1 1479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL----RQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++. |+.||+.+....+. ....++.+++++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999999888875 99999987643321 11233344557888999988542 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++||++. ++.+..|+.+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~ 225 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTA 225 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 5666778753
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=306.34 Aligned_cols=204 Identities=23% Similarity=0.382 Sum_probs=161.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578899988763 12469999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEecCCCCCC--CCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 772 KHETFARISGYCEQNDIHS--PFVTVHESLAFSAWLRL-APEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
.....++.++|++|++.+. ...+++|++.+...... .........++.++++++.+|+.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234699999997652 23478888865321000 001111223445778999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+.
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v 212 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYT 212 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999877999999999975 456667764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=337.13 Aligned_cols=203 Identities=31% Similarity=0.445 Sum_probs=168.2
Q ss_pred CCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEE
Q 000838 687 PFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKI 766 (1262)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~ 766 (1262)
|.-...+.++|+++.+... +..+|+|+|++|+|||.+||+|+||||||||+|+|.|... +.+|+|++
T Consensus 466 ~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 4445689999999998642 2369999999999999999999999999999999999887 46899999
Q ss_pred CCccCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-------cccccc
Q 000838 767 SGYPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-------PLRQSL 836 (1262)
Q Consensus 767 ~g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~ 836 (1262)
||.+.+ ...+|+.+|||+|++.++. -|++||+.++. ++.+.++ +.++++..|.. .-.++.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccc
Confidence 999864 3568899999999998875 69999998752 2333222 44455554443 344666
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 837 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+|. +..+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++. +|+|+|+++|+++ ....+|+.+
T Consensus 603 v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred ccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 664 456899999999999999999999999999999999999999999999986 4799999999886 788899864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=301.80 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=160.7
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEECCcc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSIKISGYP 770 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g~~ 770 (1262)
.++|+++.+. .+.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4677777653 2469999999999999999999999999999999999754 21 358999999987
Q ss_pred CCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000838 771 KKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 771 ~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 845 (1262)
... ...++.++|++|++.+++. |+.||+.+....+.. ....+..++.++++++.+|+.+....... ..+.+|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhC
Confidence 532 1245679999999888875 999999876433211 11223344567889999998652211111 124579
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||++. ++.+.+|+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~ 219 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVA 219 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999975 4566778753
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=301.47 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=162.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 367888887763 246899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 87532 134567999999998887 899999988653321 1122334455788899988864211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+++
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~ 216 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIA 216 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEE
Confidence 7999999999999999999999999999999999999999999999865 789999999975 4666778753
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=293.11 Aligned_cols=186 Identities=26% Similarity=0.295 Sum_probs=166.1
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEecCCCCCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-------ETFARISGYCEQNDIHS 790 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 790 (1262)
..-++|+|++++.||+..|||=||||||||+++|.+... ++.|+|+++|.++.. .-+++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456899999999999999999999999999999999887 568999999987532 12457899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeC
Q 000838 791 PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 870 (1262)
Q Consensus 791 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 870 (1262)
|+.||.||..|+..++ ..+++++++++.++++.+||..+.+++ +++||||+||||.|||||+.+|+||||||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 456788899999999999999999887 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhh
Q 000838 871 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 871 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~ 914 (1262)
|+|.|||--+.++++.|.++.++ ++|||++|||.. |.+..-|+
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~r 234 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDR 234 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccce
Confidence 99999999999999999998765 899999999975 45556666
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=304.67 Aligned_cols=192 Identities=23% Similarity=0.400 Sum_probs=156.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999763 12379999999987532 12467999999988888 999999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc----ccccccccCCccccccccc
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD----NCADILVGDEMIRGISGGQ 149 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1262)
.++... ..+..+.++++++.+||. +..+ +.++.|||||
T Consensus 108 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~~LSgG~ 149 (247)
T TIGR00972 108 LHGIKD---------------------------------KKELDEIVEESLKKAALWDEVKDRLH-----DSALGLSGGQ 149 (247)
T ss_pred hcCCCC---------------------------------HHHHHHHHHHHHHHcCCCcchhhHhh-----CCcccCCHHH
Confidence 321000 001123467789999997 4444 4556899999
Q ss_pred chhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 150 KKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 150 kqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+.||++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998643 3 567778999999999999999999999999999
Q ss_pred cchHH
Q 000838 230 RELVL 234 (1262)
Q Consensus 230 ~~~~~ 234 (1262)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 87653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=303.55 Aligned_cols=188 Identities=23% Similarity=0.380 Sum_probs=153.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 47999999999999999999999988 999999999875432 23579999999989998999999988542110
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHh-CCcccccccccCCcccccccccchhhHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVL-GLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
. + +....++++++.+ ++.+..+ ..+..||||||||++|
T Consensus 110 ---~-~--------------------------------~~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrl~l 148 (237)
T PRK11614 110 ---R-D--------------------------------QFQERIKWVYELFPRLHERRI-----QRAGTMSGGEQQMLAI 148 (237)
T ss_pred ---h-h--------------------------------HHHHHHHHHHHHHHHHHHHHh-----CchhhCCHHHHHHHHH
Confidence 0 0 0011234456666 4655444 3456799999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||||+.+|+|++|||||+|||+.++..+.+.|+++.+ + +++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999998653 3 455666899999999999999999999999999987763
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=261.79 Aligned_cols=188 Identities=24% Similarity=0.334 Sum_probs=157.7
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCC--CC-------cccceEEeeccccCCCCCCCHHHHHHHHH
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMG--EF-------VPQRTAAYISQHDNHIGEMTVRETLAFSA 72 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~--~~-------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1262)
+.++||||+|||||++.|.=+..|. +|+..+.|...+ .. ..|+.+|+|+|+-.++|.+||.||+.-+.
T Consensus 31 lvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 5789999999999999999887777 999999876542 11 12468999999999999999999997632
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchh
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 152 (1262)
++- ...+.++++.++.++|+.+.|.+.+| +.+-.|||||+||
T Consensus 108 -~kv--------------------------------~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqr 149 (242)
T COG4161 108 -CRV--------------------------------LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQR 149 (242)
T ss_pred -HHH--------------------------------hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhh
Confidence 110 01123345566788999999999998 6777899999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
|+|||||+..|+||++||||++|||+-..++++.+++++. .+.+-++++|..+.+.+.+.+++.|.+|+|++.|+.+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~--tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh--cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 9999999999999999999999999999999999999864 34555668999999999999999999999999998764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=305.81 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=166.6
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+... ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47789998877411 12358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEecCCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH---ETFARISGYCEQNDI-HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 42 234677999999974 567789999998764322 123334445688999999998777665 357999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ...|++
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i 210 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRI 210 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEE
Confidence 9999999999999999999999999999999999999999999875 9999999999864 3 357775
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=301.40 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=153.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999988 999999998875432 13569999999989999999999988654221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhC-CcccccccccCCcccccccccchhhHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLG-LDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
.. ..+..+++++.++ +.+..+ +.++.||||||||++|
T Consensus 105 ~~-------------------------------------~~~~~~~~l~~~~~l~~~~~-----~~~~~LS~G~~qrv~l 142 (230)
T TIGR03410 105 RR-------------------------------------SRKIPDEIYELFPVLKEMLG-----RRGGDLSGGQQQQLAI 142 (230)
T ss_pred cc-------------------------------------hHHHHHHHHHHHHhHHHHhh-----CChhhCCHHHHHHHHH
Confidence 00 0112344566665 455444 4566899999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
||||+.+|++++|||||+|||+.++.++.+.|++..+. .+++|++++|+.+++...||++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999986542 345677789999999999999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=298.74 Aligned_cols=187 Identities=32% Similarity=0.520 Sum_probs=150.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC---CCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD---SSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~---~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+||+||+.++......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 479999999999999999999998 76 999999998876444466799999999999999999999987543211
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHH-HHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY-YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
... . .......++. .++.+++.+..+ +.++.||||||||++||
T Consensus 112 ~~~---~----------------------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la 155 (226)
T cd03234 112 RKS---S----------------------------DAIRKKRVEDVLLRDLALTRIGG-----NLVKGISGGERRRVSIA 155 (226)
T ss_pred ccc---c----------------------------hHHHHHHHHHHHHHhhcchhhhc-----ccccCcCHHHHHHHHHH
Confidence 000 0 0001112333 788888877655 45567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCC-hhHHHhccceEEecCCeEEEec
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPA-PETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~-~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|+|+.+|++++|||||+|||+.++..+.+.|++..+ .+ .++++++|+. .++.+.||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998653 34 4556677776 6899999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=344.69 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000838 789 HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPS 864 (1262)
Q Consensus 789 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~---~~p~ 864 (1262)
.+...||.|+|.+...-......+.++..+.+ ++++.+||.+. .++. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44568999999887542211111223344455 47889999875 5655 3479999999999999998 6999
Q ss_pred CcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 865 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 865 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+++|||||+|||+.+...+++.|+++.++|.|||+++|++. .+ ...|+++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi 882 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVL 882 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEE
Confidence 99999999999999999999999999888999999999986 33 7788753
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=308.80 Aligned_cols=191 Identities=24% Similarity=0.337 Sum_probs=157.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...||.||+.++....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999998 999999999875422 2357999999863 3446799999987653221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++..++++++++.+||.+..++ .++.||||||||++||
T Consensus 109 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 109 LD----------------------------------EETVAHRVSSALHMLGLEELRDR-----VPHHLSGGEKKRVAIA 149 (277)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHH
Confidence 10 01122346778999999877764 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.|||+++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9999999999999999999999999999999987543 3466777899999999999999999999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=305.69 Aligned_cols=205 Identities=21% Similarity=0.294 Sum_probs=158.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc----cceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999998 9999999998754321 2358999999999999999999998653210
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. +...... +. +. . .....+....++++++.+||.+..+ +.++.||||||||++||
T Consensus 110 ~~---~~~~~~~------~~-~~--~-------~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 110 KT---GLFSGLL------KT-PA--F-------RRAESEALDRAATWLERVGLLEHAN-----RQAGNLAYGQQRRLEIA 165 (255)
T ss_pred cc---hhhhhhc------cc-cc--c-------ccchhHHHHHHHHHHHhCChhhhhh-----CChhhCCHHHHHHHHHH
Confidence 00 0000000 00 00 0 0000112234677899999987666 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 999999999999999999999999999999998754 3245677789999999999999999999999999987765
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=307.74 Aligned_cols=209 Identities=20% Similarity=0.228 Sum_probs=166.0
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 767 (1262)
..+.++|+++.+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46889999988742 124699999999999999999999999999999999997542 2457999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
|.++.. ...++.++|+||++.+++ .|++||+.|...... ..+.+..++.++++++.++|.+..+..++. .+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 998642 235678999999998875 799999998643221 111222334567888988875433333332 35
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+|+++
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Drii 295 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETV 295 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 67999999999999999999999999999999999999999999999875 699999999975 4556688854
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=299.16 Aligned_cols=188 Identities=24% Similarity=0.294 Sum_probs=153.6
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC--eeEEEEEECCccCCcccc-cceEEEecCCCC--CCCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGSIKISGYPKKHETF-ARISGYCEQNDI--HSPFVT 794 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 794 (1262)
+++|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 479999999999999999999999999999999987631 158999999987643222 357999999984 556789
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCC
Q 000838 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN---PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871 (1262)
Q Consensus 795 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 871 (1262)
+.|++.+....... ..+..+++++++++.+++. +..++. +..||||||||++|||||+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999775433211 1233445688999999997 344444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 872 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 872 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++....|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 197 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVA 197 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999998764 899999999976 5666788753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-32 Score=300.27 Aligned_cols=205 Identities=23% Similarity=0.249 Sum_probs=161.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 466788887763 246999999999999999999999999999999999976532 3589999999
Q ss_pred ccCC----cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000838 769 YPKK----HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 769 ~~~~----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 844 (1262)
.+.. ....++.++|++|++.+++ .|+.||+.+...... ....+..++++.++++.+++.+....... ..+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 8753 1234567999999998887 899999987643221 11223334557788888887542211111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|+.
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i 214 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRT 214 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEE
Confidence 999999999999999999999999999999999999999999999875 589999999975 566677875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=304.73 Aligned_cols=191 Identities=23% Similarity=0.321 Sum_probs=158.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC----------------cccceEEeeccccCCCCCCCH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF----------------VPQRTAAYISQHDNHIGEMTV 64 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTv 64 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999988 99999999887432 124579999999989999999
Q ss_pred HHHHHHHHhc-cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCccc
Q 000838 65 RETLAFSARC-QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIR 143 (1262)
Q Consensus 65 ~e~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 143 (1262)
.||+.++... ++.. ..+..+.++++++.+|+.+..+ +.+.
T Consensus 105 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~-----~~~~ 145 (252)
T TIGR03005 105 LDNVTEAPVLVLGMA----------------------------------RAEAEKRAMELLDMVGLADKAD-----HMPA 145 (252)
T ss_pred HHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhh-----cChh
Confidence 9999885321 1000 0011234567899999987665 4556
Q ss_pred ccccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCe
Q 000838 144 GISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223 (1262)
Q Consensus 144 ~LSGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~ 223 (1262)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++..+. .++++++++|+.+++.+++|++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999987543 34677778999999999999999999999
Q ss_pred EEEecCcchHH
Q 000838 224 IVYQGPRELVL 234 (1262)
Q Consensus 224 i~~~G~~~~~~ 234 (1262)
+++.|+.+++.
T Consensus 225 i~~~g~~~~~~ 235 (252)
T TIGR03005 225 IVEQGKPDEIF 235 (252)
T ss_pred EEEeCCHHHHh
Confidence 99999877653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=301.87 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=164.2
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEE
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKI 766 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~ 766 (1262)
...+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34688999998773 24699999999999999999999999999999999998652 135899999
Q ss_pred CCccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 000838 767 SGYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLV 837 (1262)
Q Consensus 767 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~ 837 (1262)
+|.+... ...++.++|++|++.+++. |+.||+.+....... ...+..++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9987532 2346789999999988885 999999876433211 122233455788899888864 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 838 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.+|+++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~ 238 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTA 238 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEE
Confidence 457999999999999999999999999999999999999999999999975 789999999975 4566778753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=307.62 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=155.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.++....+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999988 999999999875432 2467999999963 5778899999988653211
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++.+.+++++++.+||.+..++ .++.||||||||++||
T Consensus 114 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 154 (271)
T PRK13632 114 VP----------------------------------PKKMKDIIDDLAKKVGMEDYLDK-----EPQNLSGGQKQRVAIA 154 (271)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCCHHHhhC-----CcccCCHHHHHHHHHH
Confidence 00 01122346778999999887764 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+++.|+++++ +++++|++++|+.+++. .||++++|++|+++..|+.+++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999998754 33456777888888875 79999999999999999877653
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-31 Score=334.25 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHhCCccc-ccccccCCcccccccccchhhHHHHHHhcCC--eEEEEeCCCccccHHHHHHHHHHHHHHhh
Q 000838 116 ANVITDYYLKVLGLDNC-ADILVGDEMIRGISGGQKKRVTTGEMMVGPA--LAMFMDEISTGLDSSTTFQIVNCLRQNIH 192 (1262)
Q Consensus 116 ~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqkqRvsiA~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~ 192 (1262)
...+++ .++.+||.+. .| +.+.+|||||||||.||++|..+| ++++|||||+|||+..+.++++.|+++.+
T Consensus 466 i~~rl~-~L~~vGL~~l~l~-----r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~ 539 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD 539 (943)
T ss_pred HHHHHH-HhhccccCCCCCC-----CchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh
Confidence 344554 6889999864 55 455689999999999999999997 99999999999999999999999998743
Q ss_pred hcCCEEEEEecCCChhHHHhccceEEe------cCCeEEEecCcchH
Q 000838 193 INSETAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELV 233 (1262)
Q Consensus 193 ~~~~~~ii~~~~~~~~~~~~~D~i~vl------~~G~i~~~G~~~~~ 233 (1262)
. +.+|++++|+.+++. .||+|++| ++|++++.|+++++
T Consensus 540 -~-G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 540 -L-GNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred -C-CCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 3 456677899988775 69999999 89999998886654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-32 Score=301.23 Aligned_cols=201 Identities=24% Similarity=0.239 Sum_probs=161.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc-
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP- 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 770 (1262)
.+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 477889988763 2469999999999999999999999999999999999876 458999999986
Q ss_pred ----CCcc---c----ccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000838 771 ----KKHE---T----FARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSL 836 (1262)
Q Consensus 771 ----~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 836 (1262)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2456999999974 5677899999876432211 1122234456788999999964 45554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 837 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+..|+.
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999975 344566764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=304.92 Aligned_cols=190 Identities=23% Similarity=0.330 Sum_probs=156.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC----------------cccceEEeeccccCCCCCCCH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF----------------VPQRTAAYISQHDNHIGEMTV 64 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTv 64 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999988 99999999876421 124579999999999999999
Q ss_pred HHHHHHHHh-ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccc-cccccCCcc
Q 000838 65 RETLAFSAR-CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCA-DILVGDEMI 142 (1262)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~ 142 (1262)
+||+.++.. .... ...+.++++.++++.+||.+.. + +.+
T Consensus 110 ~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~ 150 (257)
T PRK10619 110 LENVMEAPIQVLGL----------------------------------SKQEARERAVKYLAKVGIDERAQG-----KYP 150 (257)
T ss_pred HHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHHHcCCChhhhh-----CCc
Confidence 999987542 1100 0001223466789999997653 4 456
Q ss_pred cccccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCC
Q 000838 143 RGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDG 222 (1262)
Q Consensus 143 ~~LSGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G 222 (1262)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++..+|||+++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 68999999999999999999999999999999999999999999998753 3 456677899999999999999999999
Q ss_pred eEEEecCcchHH
Q 000838 223 QIVYQGPRELVL 234 (1262)
Q Consensus 223 ~i~~~G~~~~~~ 234 (1262)
++++.|+++++.
T Consensus 229 ~i~~~~~~~~~~ 240 (257)
T PRK10619 229 KIEEEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHhh
Confidence 999999887653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=297.31 Aligned_cols=179 Identities=27% Similarity=0.420 Sum_probs=146.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+|++||+.++....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999988 999999998875432 2457999999864 4667899999988653221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. ..+.++.++++++.+||.+..+ +.+..|||||||||+||
T Consensus 106 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~~qrv~la 146 (211)
T cd03225 106 LP----------------------------------EEEIEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIA 146 (211)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCcHhhhc-----CCcccCCHHHHHHHHHH
Confidence 00 0011234567889999987665 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCe
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQ 223 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~ 223 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++++ + +++|++++|+.+++...||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999998754 3 4567778999999999999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=305.56 Aligned_cols=192 Identities=23% Similarity=0.298 Sum_probs=156.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeecccc--CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHD--NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+.+.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999998 999999999875432 235699999986 4667899999998754
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
..... . ...+.+++++++++.+||. +..+ ..+..|||||||
T Consensus 116 ~~~~~-----~----------------------------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGe~q 157 (265)
T TIGR02769 116 RHLTS-----L----------------------------DESEQKARIAELLDMVGLRSEDAD-----KLPRQLSGGQLQ 157 (265)
T ss_pred HHhcC-----C----------------------------CHHHHHHHHHHHHHHcCCChhhhh-----CChhhCCHHHHH
Confidence 31100 0 0001123467789999996 5555 455679999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+.+..+||++++|++|++++.|+++
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987543 2456777899999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=299.16 Aligned_cols=183 Identities=25% Similarity=0.309 Sum_probs=149.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-------cceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-------QRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+.||+.++..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999988 9999999998754321 2469999999988899999999988653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.. ..+.+++++++++.+||.+..+. .+..||||||||+
T Consensus 115 ~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrl 155 (228)
T PRK10584 115 LRGES----------------------------------SRQSRNGAKALLEQLGLGKRLDH-----LPAQLSGGEQQRV 155 (228)
T ss_pred hcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHH
Confidence 22100 00112346778999999876663 4567999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEe
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQ 227 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~ 227 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..+|++++|++|++++.
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999987543 245666788888877 45999999999998753
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=305.05 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=155.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++. +++..|+++|+.+.....+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999988 999999999875432 2457999999974 6778899999988654221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++..+.++++++.+|+.+..+ ..++.||||||||++||
T Consensus 114 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 114 VP----------------------------------YDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIA 154 (269)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHcCCchhhh-----CCcccCCHHHHHHHHHH
Confidence 10 0011234567899999987666 44567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||++.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|++++|+.+++.. ||++++|++|++++.|+++++.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999998654 334566778888888875 9999999999999999987764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=297.22 Aligned_cols=182 Identities=24% Similarity=0.343 Sum_probs=154.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCCCCCCHHHHHHHHHhccCCCcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~ 80 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 47999999999999999999999988 999999998875432 25799999999888889999999876532210
Q ss_pred hhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHHh
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al~ 160 (1262)
.+..+.++++.+||++..| ..+..||||||||++||||++
T Consensus 101 -----------------------------------~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -----------------------------------PDSRIDEVLNIVDLTNTGK-----KKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred -----------------------------------CHHHHHHHHHHcCCcHHHh-----hhHhhCCHHHHHHHHHHHHHh
Confidence 0123566789999987666 345679999999999999999
Q ss_pred cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 161 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|++++|+.+++.+.||++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999998643 3 456777899999999999999999999999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=299.36 Aligned_cols=203 Identities=24% Similarity=0.256 Sum_probs=161.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCe---eEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+++|+||++++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 466788887763 2469999999999999999999999999999999999865322 379999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 1345679999999999999999999987643221 1122333455667777776642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|+++
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 218 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTS 218 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 4556678753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=333.17 Aligned_cols=204 Identities=25% Similarity=0.270 Sum_probs=167.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 477889988763 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 772 KHE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLR----LAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 772 ~~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
... ..++.++|++|++.+++.+||+||+.++.... .....+.++.+++++++++.+|+.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 421 12356999999999999999999998753211 0000122334456889999999988777764 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~ 216 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYT 216 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 79999999999999999999999999999999999999999999999877999999999974 4556677753
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=301.91 Aligned_cols=196 Identities=19% Similarity=0.306 Sum_probs=157.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccCCCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999988 999999998875432 13469999999999999999999998643110
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
..+.. ... ...++.+.+++++++.+|+++..+. .++.|||||||||+||
T Consensus 107 --~~~~~------------~~~------------~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 107 --SVFAS------------LFF------------RLSAEEKDRIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIG 155 (242)
T ss_pred --ccccc------------ccc------------ccHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 00000 000 0000123356788999999876664 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999998643 3 5677789999999999999999999999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=301.44 Aligned_cols=200 Identities=23% Similarity=0.260 Sum_probs=162.5
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~ 767 (1262)
..+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3578999988763 24699999999999999999999999999999999998642 1358999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVG 838 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 838 (1262)
|.+... ...++.++|++|++.+++. |+.||+.+....+. ... ..+++++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987531 2346789999999888875 99999988654332 122 23455888999999853 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+....|+.
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri 249 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKT 249 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEE
Confidence 457999999999999999999999999999999999999999999999976 489999999975 455667773
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=299.16 Aligned_cols=191 Identities=24% Similarity=0.388 Sum_probs=158.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++....+..
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~- 102 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD- 102 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999998 999999999875432 2457999999998998999999998864322100
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+..+.+.++++.+||.+..++ .++.||||||||++||||+
T Consensus 103 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral 144 (235)
T cd03299 103 ---------------------------------KKEIERKVLEIAEMLGIDHLLNR-----KPETLSGGEQQRVAIARAL 144 (235)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCChhHHhc-----CcccCCHHHHHHHHHHHHH
Confidence 00112245678899999877764 4567999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++++|||||+|||+.++..+++.|++++... ++++++++|+.+++.+.||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999875432 456777889999999999999999999999999877653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=299.52 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=160.5
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC--eeEEEEEECC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGSIKISG 768 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~~~g 768 (1262)
..+.++|+++.++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578899987761 24899999999999999999999999999999999987631 1689999999
Q ss_pred ccCCccc-ccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000838 769 YPKKHET-FARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP---LRQSLVGLPGV 842 (1262)
Q Consensus 769 ~~~~~~~-~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~ 842 (1262)
.++.... .++.++|++|++. +.+..|+.+++.+...... ... .++.++++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 8764322 2357999999974 4466899998876433221 111 2245788999999976 23443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v 211 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDV 211 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEE
Confidence 579999999999999999999999999999999999999999999998764 899999999975 355567774
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=309.16 Aligned_cols=193 Identities=24% Similarity=0.334 Sum_probs=156.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 47999999999999999999999886111299999999875432 2457999999974 6778999999988643221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
. ..++..++++++++.+||++..+ ..++.||||||||++||
T Consensus 115 ~----------------------------------~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 115 V----------------------------------PRPEMIKIVRDVLADVGMLDYID-----SEPANLSGGQKQRVAIA 155 (282)
T ss_pred C----------------------------------CHHHHHHHHHHHHHHCCChhHhc-----CCcccCCHHHHHHHHHH
Confidence 1 00112345677899999987666 45678999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++ ..||++++|++|++++.|+++++.
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999987543 245667788888887 579999999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=307.65 Aligned_cols=190 Identities=24% Similarity=0.330 Sum_probs=156.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC----cccceEEeeccccC-CCCCCCHHHHHHHHHhcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF----VPQRTAAYISQHDN-HIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~ 75 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999998 99999999987542 22467999999863 233569999999865432
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
+.. ..+.+++++++++.+||++..++ .+..||||||||++|
T Consensus 115 ~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrv~l 155 (280)
T PRK13633 115 GIP----------------------------------PEEIRERVDESLKKVGMYEYRRH-----APHLLSGGQKQRVAI 155 (280)
T ss_pred CCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHH
Confidence 110 01123346788999999887774 446799999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||+|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.. ||++++|++|++++.|+++++.
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999987543 34566778999888875 9999999999999999988765
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=303.19 Aligned_cols=191 Identities=29% Similarity=0.441 Sum_probs=156.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999988 999999998875422 235699999998887889999999885432110
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
. .++.++.++++++.+||.+..++ .+..|||||||||+|||
T Consensus 107 --~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 107 --S--------------------------------RAEDDALVAAALAQVDLAHLAGR-----DYPQLSGGEQQRVQLAR 147 (258)
T ss_pred --C--------------------------------cHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHH
Confidence 0 00112345678999999876664 45679999999999999
Q ss_pred HHh------cCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 158 MMV------GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 158 al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+ .+|++++|||||+|||+.++..+.+.|+++++.. +++|++++|+.+++..+||++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999999999999875333 456777899999999999999999999999999877
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 227 ~~~ 229 (258)
T PRK13548 227 EVL 229 (258)
T ss_pred HHh
Confidence 653
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=301.56 Aligned_cols=206 Identities=23% Similarity=0.268 Sum_probs=164.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578899998874 356999999999999999999999999999999999986531 3589999999
Q ss_pred ccCCc----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000838 769 YPKKH----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 769 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 844 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+...... ..+.++.++.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234567999999998887 899999987643221 12333444456788899998653221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 845 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|+++.+ ++|||+++|++. ++.+..|+.+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~ 233 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAA 233 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 5666778753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=298.73 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=160.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 467888887763 245999999999999999999999999999999999986532 1369999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ...++.++|++|++.+++. |+.||+.+....+.. ...+..++.++++++.+++.+...... ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 2346789999999988875 999999986543311 112223445777888888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+..|+.
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i 216 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWT 216 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEE
Confidence 799999999999999999999999999999999999999999999985 5899999999875 345566775
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=297.56 Aligned_cols=185 Identities=24% Similarity=0.360 Sum_probs=147.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCC--CCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHI--GEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~--~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+. +.+||+||+.++......
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~- 100 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG- 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccc-
Confidence 47999999999999999999999988 999999998764 2345799999997653 347999999885431100
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.+.. ..++.+++++++++.+||++..+. .+..||||||||++||||
T Consensus 101 -~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 101 -LFRR----------------------------LSKADKAKVDEALERVGLSELADR-----QIGELSGGQQQRVLLARA 146 (213)
T ss_pred -cccC----------------------------CCHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHH
Confidence 0000 000112346778999999876664 455799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
|+.+|++++|||||+|||+.++..+.+.|++.++ . ++++++++|+.+++.+.||++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998754 3 456777899999999999999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=306.78 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=155.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc----ccceEEeeccccC-CCCCCCHHHHHHHHHhcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----PQRTAAYISQHDN-HIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~ 75 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..|++||+.++....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999988 999999999875432 2457999999864 466789999998865322
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
+.. ..+..+.++++++.+||++..++ .+..||||||||++|
T Consensus 107 ~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~l 147 (274)
T PRK13644 107 CLP----------------------------------PIEIRKRVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVAL 147 (274)
T ss_pred CCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcC-----CcccCCHHHHHHHHH
Confidence 100 01112346778999999887764 456799999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||||+.+|+++||||||+|||+.++..+++.|+++.+ . +++|++++|+.+++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998653 3 45677789999888 569999999999999999987753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=299.38 Aligned_cols=207 Identities=21% Similarity=0.246 Sum_probs=164.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+||++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 578899988773 235899999999999999999999999999999999986532 1369999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....... .+..+.++.+.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988887 8999999876432211 1222334567889999988542211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||+|+++|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+.+|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~ 222 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTA 222 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEE
Confidence 7999999999999999999999999999999999999999999999865 4899999999985 5677788853
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=302.13 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=161.4
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899988763 2459999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN----PLRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 839 (1262)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1345679999999988874 999999986543211 12223345577888888874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|+++
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~ 252 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTM 252 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4556778753
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=299.12 Aligned_cols=201 Identities=25% Similarity=0.258 Sum_probs=161.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477889988763 246999999999999999999999999999999999975421 2479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL----RQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+. .++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87532 2345679999999988874 999999987544321 1223334557788888887532 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v 218 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYT 218 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEE
Confidence 457999999999999999999999999999999999999999999999875 689999999975 355677875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=306.46 Aligned_cols=190 Identities=27% Similarity=0.363 Sum_probs=155.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----cccceEEeeccccC-CCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDN-HIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .++..|+.||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999998 99999999987421 12357999999864 24556899999886432
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+.. ..+..+.++++++.+||.+..++ .+..||||||||++
T Consensus 106 ~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~ 146 (271)
T PRK13638 106 LGVP----------------------------------EAEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVA 146 (271)
T ss_pred cCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHH
Confidence 2110 00112345678999999877664 45679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|+++||||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998753 3 456777899999999999999999999999999987654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=298.76 Aligned_cols=202 Identities=25% Similarity=0.298 Sum_probs=161.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 467899988763 24699999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 134567999999988876 799999987643321 1122333455788899999852 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|+++
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~ 217 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTA 217 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEE
Confidence 457999999999999999999999999999999999999999999999854 789999999975 4566678753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=306.84 Aligned_cols=190 Identities=21% Similarity=0.320 Sum_probs=153.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-------cccceEEeeccccC-CCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-------VPQRTAAYISQHDN-HIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~ 72 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||+||+.++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 47999999999999999999999998 99999999887532 12457999999862 233479999998865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkq 151 (1262)
...+.. .++..+.++++++.+||.+ ..+ +.+..|||||||
T Consensus 112 ~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~q 152 (280)
T PRK13649 112 QNFGVS----------------------------------QEEAEALAREKLALVGISESLFE-----KNPFELSGGQMR 152 (280)
T ss_pred HHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh-----CCcccCCHHHHH
Confidence 322110 0011234567888999963 444 455679999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
|++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998753 3 456777899999999999999999999999999987
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 231 ~~~ 233 (280)
T PRK13649 231 DIF 233 (280)
T ss_pred HHh
Confidence 763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=285.49 Aligned_cols=164 Identities=31% Similarity=0.409 Sum_probs=141.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776653 2469999999999999999999999999999999999876 458999999987532
Q ss_pred -----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000838 774 -----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTE 848 (1262)
Q Consensus 774 -----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 848 (1262)
..+++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23457899999999888889999887531 8999
Q ss_pred HHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 849 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+..|+.
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i 171 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRV 171 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 999999999999999999999999999999999999999999877 899999999974 344456654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=303.68 Aligned_cols=195 Identities=18% Similarity=0.308 Sum_probs=153.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+|.. ..+|+|.++|.++... ..++.++|++|++.+++ +|++||+.++..
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 118 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPR 118 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 479999999999999999999987410 1289999999887432 12457999999988777 899999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+.. ..+.++.++++++.+|+.+...... ++.+..|||||||||
T Consensus 119 ~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv 163 (258)
T PRK14268 119 IHGAN----------------------------------KKDLDGVVENALRSAALWDETSDRL-KSPALSLSGGQQQRL 163 (258)
T ss_pred HcCCC----------------------------------HHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHHH
Confidence 32110 0011224567788888842211111 245568999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ ++|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 23 5677789999999999999999999999999998776
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 241 ~ 241 (258)
T PRK14268 241 F 241 (258)
T ss_pred h
Confidence 3
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=342.93 Aligned_cols=192 Identities=24% Similarity=0.371 Sum_probs=150.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.+||+||||||||||+++|+|++ |+ +|+|.+||.++.+.. .++.++||+|++.+| +.|++|||.++...
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~TI~eNI~~g~~~--- 449 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGTLRDNVLLGNPD--- 449 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-CcCHHHHhhcCCCC---
Confidence 37999999999999999999999 77 899999999987654 357899999999776 46999999986310
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
...+...+++ +. ...++.+ -.|++..||.||++ ..+||||||||++|||
T Consensus 450 -~~~eei~~al---------------------~~------a~l~~~i--~~lp~G~dT~vge~-G~~LSGGQrQRialAR 498 (588)
T PRK11174 450 -ASDEQLQQAL---------------------EN------AWVSEFL--PLLPQGLDTPIGDQ-AAGLSVGQAQRLALAR 498 (588)
T ss_pred -CCHHHHHHHH---------------------HH------hCHHHHH--HhcccccccccccC-CCCCCHHHHHHHHHHH
Confidence 0011111111 00 0011222 24677889999965 5679999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|++++|+|++||||||+||+.++..+.+.|++.. +++|+ ++++|+. +..+.||+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~Tv-IiItHrl-~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTT-LMVTHQL-EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEE-EEEecCh-HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999998753 34455 4566665 4556799999999999999999998864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=329.93 Aligned_cols=205 Identities=23% Similarity=0.313 Sum_probs=166.3
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 45788887763 34699999999999999999999999999999999998754235899999998764
Q ss_pred cc----cccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000838 773 HE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP-EVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lS 846 (1262)
.. ..++.+||++|++.+++.+||.||+.+....+... ....++.+++++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 21 12456999999998899999999998864322111 122333455688999999997654 343 34799
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 847 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|+++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~ 212 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTIC 212 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999878999999999975 4556678753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=300.84 Aligned_cols=186 Identities=21% Similarity=0.370 Sum_probs=153.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC---cccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF---VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++ .||+||+.++...++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47999999999999999999999988 99999999887532 22457999999987776 699999987432110
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccchhhHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
..+.++.++++.+||+ +..+ +.+..||||||||++||
T Consensus 106 -------------------------------------~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 106 -------------------------------------EKNVDVEYYLSIVGLNKEYAT-----RDVKNLSGGEAQRVSIA 143 (241)
T ss_pred -------------------------------------cHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHH
Confidence 0012355678889996 4444 45668999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|++++|+.+++.+.||++++|++|+++..|+++++.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM-NLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999865422 456777899999999999999999999999999887753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-32 Score=329.90 Aligned_cols=204 Identities=29% Similarity=0.345 Sum_probs=168.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 467889988763 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KH----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.. ..+++.++|++|++.+++.+||.||+.+....+.....+..+.+++++++++.+|+.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 32 1235679999999989999999999988532111111223344556889999999987666653 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++....|+++
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~ 211 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAIT 211 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 4556677753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=301.98 Aligned_cols=189 Identities=24% Similarity=0.318 Sum_probs=154.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC------C---cccceEEeeccccCCCCCCCHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE------F---VPQRTAAYISQHDNHIGEMTVRETLAFS 71 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~------~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~ 71 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. . ..++.++|++|++.+++.+||.||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 47999999999999999999999988 9999999987631 1 1245799999999899999999999753
Q ss_pred H-hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 72 A-RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
. ...+.. ..+....++++++.+||++..+. .+..||||||
T Consensus 107 ~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~ 147 (242)
T PRK11124 107 PCRVLGLS----------------------------------KDQALARAEKLLERLRLKPYADR-----FPLHLSGGQQ 147 (242)
T ss_pred HHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHH
Confidence 2 111100 00112346778999999876664 4567999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . ++++++++|+..++.+.+|++++|.+|++++.|++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998643 3 45677789999999999999999999999999987
Q ss_pred chH
Q 000838 231 ELV 233 (1262)
Q Consensus 231 ~~~ 233 (1262)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-32 Score=268.45 Aligned_cols=180 Identities=24% Similarity=0.316 Sum_probs=154.5
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----------------ccccce
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----------------ETFARI 779 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------------~~~~~~ 779 (1262)
+...+|++||+..+.|+.+.|+|.|||||||+|+||.-... +..|.|.+||..+.. ...|..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999987655 458999999975421 112345
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000838 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVEL 859 (1262)
Q Consensus 780 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al 859 (1262)
.|+|+|+.++++.+||.||+.-+..-- ...++.+..++++..|..+|+.+.++.+ +..|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHH
Confidence 799999999999999999987543211 1345566677789999999999988876 457999999999999999
Q ss_pred hhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000838 860 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 904 (1262)
Q Consensus 860 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 904 (1262)
+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||..
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 999999999999999999999999999999999999999999975
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=297.90 Aligned_cols=204 Identities=18% Similarity=0.179 Sum_probs=162.7
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 767 (1262)
..+..+++++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 456667776655 2357999999999999999999999999999999999986531 258999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGV 842 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 842 (1262)
|.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ....++.++++++.+++.+..+.... ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987532 23456799999998877 5999999998754332 1 12234568889999998653322211 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|++. ++.+..|++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v 218 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTT 218 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 6799999999999999999999999999999999999999999999985 4799999999975 466777875
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=292.61 Aligned_cols=180 Identities=27% Similarity=0.338 Sum_probs=147.4
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEecCCCCCCCCCCH
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 795 (1262)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999876 458999999976421 1112234567999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCC
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875 (1262)
Q Consensus 796 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 875 (1262)
+||+.+....+. .+....++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988654321 223344456788999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 876 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 876 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|+.++..+.+.|++++++|+|||++||++. ++.+..|+.
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i 212 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRA 212 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999998777899999999974 344556654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=303.39 Aligned_cols=190 Identities=27% Similarity=0.372 Sum_probs=156.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----cccceEEeeccccC-CCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDN-HIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~ 106 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN 106 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 47999999999999999999999988 99999999987421 12457999999863 33457999999876432
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.+. . ..+..+++.++++.+||++..++ .++.||||||||++
T Consensus 107 ~~~--~--------------------------------~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 107 LGL--S--------------------------------KEEVEKRVKEALKAVGMEGFENK-----PPHHLSGGQKKRVA 147 (275)
T ss_pred cCC--C--------------------------------HHHHHHHHHHHHHHCCCchhhcC-----ChhhCCHHHHHHHH
Confidence 110 0 00112346678999999887764 45579999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998753 3 466777999999999999999999999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=300.86 Aligned_cols=202 Identities=21% Similarity=0.246 Sum_probs=161.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 768 (1262)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 578999998773 2469999999999999999999999999999999999642 1 13589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++. |+.||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 1345679999999988874 99999987643221 1112223445777888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|+++
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~ 234 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTA 234 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4666778753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=310.04 Aligned_cols=196 Identities=20% Similarity=0.294 Sum_probs=156.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|+.++. ...+|+|.++|.++... ..++.++||+|++.++ ..|++||+.|+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~ 188 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPR 188 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHH
Confidence 47999999999999999999998631 01289999999998531 2356799999998777 5799999998653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+... .+..++.++.+++.++|.+..++.++ +.+.+||||||||+
T Consensus 189 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl 234 (329)
T PRK14257 189 NNGIND---------------------------------RKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRL 234 (329)
T ss_pred hcCCCh---------------------------------HHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHH
Confidence 321100 00012234566788887654445554 56778999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|+|++|||||+|||+.+...+.+.|+++.+ + .++++++|+...+.+.||||++|++|++++.|+++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999988642 3 5677799999999999999999999999999999987
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 312 ~ 312 (329)
T PRK14257 312 F 312 (329)
T ss_pred h
Confidence 4
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-32 Score=297.69 Aligned_cols=185 Identities=23% Similarity=0.287 Sum_probs=151.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--cccceEEeec-cccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~-Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++ |++.+++.+|++||+.+....++.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999988 99999999875321 2345799997 556777899999999886543221
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
. .++..+.++.+++.+||++..|+. +..||||||||++||+
T Consensus 126 ~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~ 166 (236)
T cd03267 126 P----------------------------------PARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAA 166 (236)
T ss_pred C----------------------------------HHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 0 001123456788899998877754 4579999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
||+.+|++++|||||+|||+.++..+.+.|+++++. ++.+|++++|+.+++.+.||++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999987543 3456777899999999999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=329.50 Aligned_cols=197 Identities=21% Similarity=0.302 Sum_probs=166.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899998773 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Ccc---c-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 772 KHE---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 772 ~~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
... . .++.+||++|++.+++.+||.||+.+... . ....+++++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 321 1 23468999999999999999999987531 1 1223456788999999987777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|+++
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~ 211 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRIS 211 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999878999999999975 4556778753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=308.86 Aligned_cols=191 Identities=20% Similarity=0.297 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCC--------CcccceEEeeccccC-CCCCCCHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE--------FVPQRTAAYISQHDN-HIGEMTVRETLAFS 71 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~--------~~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~ 71 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++. .+...|++||+.++
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 47999999999999999999999988 9999999988642 112457999999863 23346999999986
Q ss_pred HhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccc
Q 000838 72 ARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 150 (1262)
....+. . .++..+.++++++.++|+ +..+ +.+..||||||
T Consensus 116 ~~~~~~--~--------------------------------~~~~~~~~~~ll~~~~L~~~~~~-----~~~~~LS~Gq~ 156 (289)
T PRK13645 116 PVNLGE--N--------------------------------KQEAYKKVPELLKLVQLPEDYVK-----RSPFELSGGQK 156 (289)
T ss_pred HHHcCC--C--------------------------------HHHHHHHHHHHHHHcCCChhHhc-----CChhhCCHHHH
Confidence 532210 0 001123456788899995 4555 44567999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.+.||++++|++|++++.|+.
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999987543 345677789999999999999999999999999998
Q ss_pred chHH
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~~~ 234 (1262)
+++.
T Consensus 236 ~~~~ 239 (289)
T PRK13645 236 FEIF 239 (289)
T ss_pred HHHh
Confidence 7653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-33 Score=273.83 Aligned_cols=194 Identities=24% Similarity=0.375 Sum_probs=168.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+|+++|||||||||||.+++++++.+ +|+|+++|.++..... .+.++..-|+...-..+||+|-+.||.--...
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq 105 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ 105 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC
Confidence 58999999999999999999999988 9999999999876543 25678899998888899999999997532111
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
+ + ...|.+..+++.++.++|++..| ++..+||||||||.-||.
T Consensus 106 G----------------------R----------lt~eD~~~I~~aieyl~L~~l~d-----ryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 106 G----------------------R----------LTKEDRRIINEAIEYLHLEDLSD-----RYLDELSGGQRQRAFIAM 148 (252)
T ss_pred C----------------------C----------CchHHHHHHHHHHHHhcccchHH-----HhHHhcccchhhhhhhhe
Confidence 1 0 12234567899999999999887 677889999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
.++++.+.++||||.+.||...+.++++.|++++++-++|+|+ +.||...+..++|+|+-|++|+++.+|+++++.+
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999877766555 6799999999999999999999999999998763
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-32 Score=314.97 Aligned_cols=193 Identities=27% Similarity=0.354 Sum_probs=162.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccC--CCC---cccceEEeecccc--CCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNM--GEF---VPQRTAAYISQHD--NHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~--~~~---~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+. +.. ..++.+-+|+|++ .+.|.+||+++|.....
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 47999999999999999999999998 99999999872 111 1235677888874 68899999999998765
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.. ...+.+++++++++..||+.. ..++++++||||||||+
T Consensus 396 ~~~~~---------------------------------~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRv 438 (539)
T COG1123 396 IHGGG---------------------------------SGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRV 438 (539)
T ss_pred hhccc---------------------------------chHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHH
Confidence 44211 012234568899999999852 23488999999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|+++++|||||+||+.++.++.++|+++.++ -+.+.+.|+||...+...||||+||++|++++.|+.+++
T Consensus 439 aIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e-~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE-LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999998654 456778899999999999999999999999999988877
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 518 ~ 518 (539)
T COG1123 518 F 518 (539)
T ss_pred h
Confidence 4
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=302.54 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=152.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+++ +||+||+.++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~ 113 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPK 113 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHH
Confidence 479999999999999999999998620 1289999999886421 22467999999987774 899999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc----ccccccccCCccccccccc
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD----NCADILVGDEMIRGISGGQ 149 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1262)
..+. ++ ..+.++.++++++.+++. +..+ ..++.|||||
T Consensus 114 ~~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~LSgG~ 155 (254)
T PRK14273 114 IHGT---KD------------------------------KKKLDEIVEQSLKKSALWNEVKDKLN-----TNALSLSGGQ 155 (254)
T ss_pred hcCC---CC------------------------------HHHHHHHHHHHHHHhCCchhhHHHHh-----CCcccCCHHH
Confidence 3210 00 001123456677788873 3344 3456899999
Q ss_pred chhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 150 KKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 150 kqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ ++|++++|+.+++.+.|||+++|++|+++..|+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999873 23 567778999999999999999999999999999
Q ss_pred cchHH
Q 000838 230 RELVL 234 (1262)
Q Consensus 230 ~~~~~ 234 (1262)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=296.02 Aligned_cols=191 Identities=24% Similarity=0.315 Sum_probs=158.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc-ccceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++|++|++.+++.+|++||+.++...++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~- 103 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP- 103 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999998 999999999875432 2457999999998888899999998865432110
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
.......++.+++.+||.+..++ .+..||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrl~laral 145 (232)
T cd03300 104 ---------------------------------KAEIKERVAEALDLVQLEGYANR-----KPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHH
Confidence 00012245678899999877764 4467999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+..++.+.||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999999999875422 456666889989999999999999999999999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-32 Score=289.93 Aligned_cols=163 Identities=42% Similarity=0.741 Sum_probs=139.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC---CCCceeEEEEECCccCCCC--cccceEEeeccccCCCCCCCHHHHHHHHHhcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD---SSLKVSGRVTYNGHNMGEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~---~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~ 75 (1262)
+++|+||||||||||+++|+|+++ |+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc
Confidence 479999999999999999999998 66 99999999987543 23467999999998999999999998753210
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
.++.+..||||||||++|
T Consensus 112 --------------------------------------------------------------~~~~~~~LS~Ge~qrl~l 129 (202)
T cd03233 112 --------------------------------------------------------------GNEFVRGISGGERKRVSI 129 (202)
T ss_pred --------------------------------------------------------------cccchhhCCHHHHHHHHH
Confidence 113445799999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEec
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G 228 (1262)
||||+.+|++++|||||+|||+.++..+.+.|+++.+..+.++++++||+.+++.+.||++++|++|++++.|
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999998755334566777788788999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-32 Score=300.71 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=156.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC---cccceEEeeccccCCCCCCCHHHHHHHHHhcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF---VPQRTAAYISQHDNHIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~ 75 (1262)
+++|+||||||||||+++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 47999999999999999999998741 01389999999987542 22467999999988888999999999865422
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsi 155 (1262)
+.... ..+..+.++++++.+||.+..+.. -+..+.+||||||||++|
T Consensus 111 ~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 111 RLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred cccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHH
Confidence 10000 001123466788999986421111 124566899999999999
Q ss_pred HHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 156 A~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
||||+.+|++++|||||+|||+.++..+.+.|+++. . ++++++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999863 2 356777899999999999999999999999999987763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=296.53 Aligned_cols=201 Identities=23% Similarity=0.298 Sum_probs=159.8
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 467889988763 2469999999999999999999999999999999999743 21 2479999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 839 (1262)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999998887 6999999886543221 112222344667788887642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+..|++
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i 217 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKT 217 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEE
Confidence 457999999999999999999999999999999999999999999999865 589999999975 466677875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=311.26 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=157.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC-ceeEEEEECCccCCCCcc-------cceEEeeccccC--CCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL-KVSGRVTYNGHNMGEFVP-------QRTAAYISQHDN--HIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~-~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~--~~~~lTv~e~l~f 70 (1262)
+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++. +.|.+||.+++.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 479999999999999999999986310 138999999998754321 246999999975 6788999999986
Q ss_pred HHhccCC-CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCccccccccc
Q 000838 71 SARCQGV-GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQ 149 (1262)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1262)
....... +..+. ...+.++++.++++.+||.+..+ .-++++..|||||
T Consensus 115 ~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~ 163 (330)
T PRK15093 115 NIPGWTYKGRWWQ-----------------------------RFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGE 163 (330)
T ss_pred HHHhhhccccccc-----------------------------cHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHH
Confidence 4321100 00000 00012345678899999975322 1135677899999
Q ss_pred chhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecC
Q 000838 150 KKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 150 kqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~ 229 (1262)
||||+|||||+.+|++|++||||+|||+.++.++++.|+++.+ +.+.+|++++|+...+.++||+|++|++|++++.|+
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998754 335677889999999999999999999999999999
Q ss_pred cchHH
Q 000838 230 RELVL 234 (1262)
Q Consensus 230 ~~~~~ 234 (1262)
.+++.
T Consensus 243 ~~~i~ 247 (330)
T PRK15093 243 SKELV 247 (330)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=299.49 Aligned_cols=210 Identities=24% Similarity=0.303 Sum_probs=164.5
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+.... ..+ ...++.+++|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 66788887764100 000 0013569999999999999999999999999999999999876 45899999998653
Q ss_pred c------ccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000838 773 H------ETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVN 843 (1262)
Q Consensus 773 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 843 (1262)
. ...++.++|++|++ .+.+..|+.|++.+..... ...........++++++.+|+. +..+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 3567799999987643211 1123334455688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+..|+.+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~ 223 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVM 223 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEE
Confidence 79999999999999999999999999999999999999999999998765 899999999975 4555677743
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=298.95 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=160.6
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 767 (1262)
..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 4688999998763 246999999999999999999999999999999999975421 247999999
Q ss_pred CccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000838 768 GYPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVG 838 (1262)
Q Consensus 768 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 838 (1262)
|.+... ..+++.++|++|++.+++. |+.||+.+....+. .. ...++.+++.++.+++.+ ..++.
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 2345689999999888874 99999987643321 11 122344667788888742 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 839 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+..|+.+
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~ 231 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTA 231 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999985 4667778753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=295.42 Aligned_cols=180 Identities=22% Similarity=0.352 Sum_probs=148.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh-c
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR-C 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~-~ 74 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.++.. .
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~ 104 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999988 99999999887421 124679999999988888999999988642 1
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++. . .++..+.++++++.+||++..+ +.+..||||||||++
T Consensus 105 ~~~--~--------------------------------~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~G~~qrv~ 145 (213)
T cd03262 105 KGM--S--------------------------------KAEAEERALELLEKVGLADKAD-----AYPAQLSGGQQQRVA 145 (213)
T ss_pred cCC--C--------------------------------HHHHHHHHHHHHHHcCCHhHhh-----hCccccCHHHHHHHH
Confidence 110 0 0011234567889999987666 345679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQI 224 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i 224 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|++++|+.+++.+.||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999998754 3 45567789999999999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=301.25 Aligned_cols=198 Identities=21% Similarity=0.317 Sum_probs=155.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCC--C---cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGE--F---VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~--~---~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++.. . ..++.++|++|++.+++.+||.||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVK 111 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999762 0138999999998752 1 224579999999989999999999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.... .++....++++++.+||.+...... ++.+..||||||||+
T Consensus 112 ~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 158 (253)
T PRK14267 112 LNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRL 158 (253)
T ss_pred hcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHH
Confidence 3211000 0011223566788888753211111 245678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++...||++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998642 3 5677789999999999999999999999999998765
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 236 ~ 236 (253)
T PRK14267 236 F 236 (253)
T ss_pred H
Confidence 3
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-32 Score=295.65 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=156.9
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.+.. ..+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 567888876531 12458999999999999999999999999999999999876 45899999998653
Q ss_pred c---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG------LPGVN 843 (1262)
Q Consensus 773 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~ 843 (1262)
. ...++.++|++|++.+++ .|+.||+.+... ... ++.+.++++.+++.+..+..+. .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999998776 699999976321 111 1235677888888776655321 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++.. .+..|+.
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v 208 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRI 208 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEE
Confidence 79999999999999999999999999999999999999999999998764 899999999863 3677764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=336.86 Aligned_cols=197 Identities=25% Similarity=0.370 Sum_probs=163.2
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.+. +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999986542 1246999999999999999999999999999999999987 4 47999999987
Q ss_pred CC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000838 771 KK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 840 (1262)
Q Consensus 771 ~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 840 (1262)
++ ...+++.++||+|++.++. -|++||+.++. ++.+++ +++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 3467789999999999886 59999998752 223333 3566677666654 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+++
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Ii 554 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIW 554 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999885 5899999999984 667888864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=298.58 Aligned_cols=204 Identities=19% Similarity=0.225 Sum_probs=159.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~g 768 (1262)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 477899988763 246999999999999999999999999999999999975311 2579999999
Q ss_pred ccCC-----cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKK-----HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+.. ....++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+... ...+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8752 1234567999999988887 599999988653321 11 122344667788888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++.
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~ 221 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTA 221 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEE
Confidence 7999999999999999999999999999999999999999999999875 589999999975 5677778753
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=302.56 Aligned_cols=192 Identities=21% Similarity=0.241 Sum_probs=155.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC--CCCCCCHHHHHHHHHhcc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN--HIGEMTVRETLAFSARCQ 75 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~ 75 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++.+|+.|++.+.....
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 47999999999999999999999998 999999998875321 1346999999864 567889999998865432
Q ss_pred CCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccchhhH
Q 000838 76 GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
.. . ...+..+.++++++.+||. +..+ ..+..|||||||||+
T Consensus 118 ~~---~------------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 118 TD---L------------------------------EPEQREKQIIETLRQVGLLPDHAS-----YYPHMLAPGQKQRLG 159 (267)
T ss_pred cC---C------------------------------CHHHHHHHHHHHHHHcCCChHHHh-----cCchhcCHHHHHHHH
Confidence 10 0 0001123467789999994 5555 345679999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|+|++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..+||++++|++|++++.|+++++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999987543 3456777899999999999999999999999999877653
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=299.32 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=159.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 768 (1262)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 578999998763 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN----PLRQSLVGL 839 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 839 (1262)
.+... ..+++.++|++|++.+++ .|+.||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999988887 599999988653321 112222334467777777543 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+..|+.
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i 236 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKT 236 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEE
Confidence 457999999999999999999999999999999999999999999999865 799999999975 455667774
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=303.28 Aligned_cols=194 Identities=22% Similarity=0.322 Sum_probs=156.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++.....
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~- 114 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH- 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc-
Confidence 47999999999999999999999988 999999998864322 23579999999888889999999987531100
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
. .... ...+.+++++.+++.+||++..++ .+..|||||||||+|||
T Consensus 115 ~-~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 115 G-ALGR----------------------------FGAADREKVEEAISLVGLKPLAHR-----LVDSLSGGERQRAWIAM 160 (265)
T ss_pred c-cccC----------------------------CCHHHHHHHHHHHHHcCCHHHhcC-----CcccCCHHHHHHHHHHH
Confidence 0 0000 000112346778999999876664 44579999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
||+.+|+|+||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999987543 245677789999999999999999999999999987765
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=302.83 Aligned_cols=195 Identities=22% Similarity=0.359 Sum_probs=157.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++..|++||+.++..-..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~- 110 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ- 110 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc-
Confidence 47999999999999999999999988 999999998875432 23569999999988888999999987421000
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
.... . ..+.....++++++.+||.+..+ +.+..||||||||++|||
T Consensus 111 -~~~~----------------~------------~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 111 -PLFT----------------R------------WRKEDEEAVTKAMQATGITHLAD-----QSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred -cccc----------------C------------CCHHHHHHHHHHHHHcCCHHHhc-----CCcccCChHHHHHHHHHH
Confidence 0000 0 00011234677899999987666 455689999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+..++.+.||++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999987542 2456777899999999999999999999999999987653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=302.55 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=158.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCC--------cccceEEeeccccCCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEF--------VPQRTAAYISQHDNHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~--------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|.++|+...+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 4799999999999999999999987522359999999887432 11356999999998899999999998754
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchh
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 152 (1262)
..... .... ..+. ..++.+++++++++.+||++..|. .+..||||||||
T Consensus 112 ~~~~~---------~~~~--~~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 160 (262)
T PRK09984 112 LGSTP---------FWRT--CFSW---------------FTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQQQR 160 (262)
T ss_pred ccccc---------chhh--hccc---------------ccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHHHHH
Confidence 21000 0000 0000 001123456788999999876664 455799999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
|+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. ++++|++++|+.+++.+.||++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987543 34667778999999999999999999999999998765
Q ss_pred H
Q 000838 233 V 233 (1262)
Q Consensus 233 ~ 233 (1262)
.
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 3
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=301.00 Aligned_cols=192 Identities=23% Similarity=0.320 Sum_probs=152.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC-----CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD-----SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~-----~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f 70 (1262)
+++|+|||||||||||++|+|..+ |+ +|+|.++|+++... ..++.++|++|++.+++ .||+||+.+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~ 109 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAY 109 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHH
Confidence 479999999999999999999864 34 89999999887531 12457999999988877 599999998
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
+...++... .++.+++++++++.+||.+...... ++.++.||||||
T Consensus 110 ~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~ 155 (253)
T PRK14242 110 GLRVNGVKD---------------------------------KAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQ 155 (253)
T ss_pred HHHHcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHH
Confidence 754321100 0001234566788888854221111 245678999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
|||+|||||+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|++++|+.+++.+.||++++|++|++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999863 23 5677789999999999999999999999999988
Q ss_pred chH
Q 000838 231 ELV 233 (1262)
Q Consensus 231 ~~~ 233 (1262)
+++
T Consensus 233 ~~~ 235 (253)
T PRK14242 233 EQI 235 (253)
T ss_pred HHH
Confidence 765
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=328.02 Aligned_cols=190 Identities=26% Similarity=0.312 Sum_probs=158.2
Q ss_pred eEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCCCCCCCC
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQNDIHSPFV 793 (1262)
Q Consensus 718 ~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~l 793 (1262)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 569999999999999999999999999999999999876 458999999987532 12346799999999888999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCC
Q 000838 794 TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873 (1262)
Q Consensus 794 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 873 (1262)
||.||+.+..........+.++..++++++++.+++.+..++.+ .+|||||||||+||+||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334456889999999987776654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 874 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 874 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i 204 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEI 204 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEE
Confidence 99999999999999999878999999999975 455667774
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=296.14 Aligned_cols=191 Identities=25% Similarity=0.395 Sum_probs=158.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc-cceEEeeccccCCCCCCCHHHHHHHHHhccCCCc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~ 79 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+.||+.+....++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~- 103 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP- 103 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC-
Confidence 47899999999999999999999988 9999999998754322 457999999998888899999998865432110
Q ss_pred chhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHHH
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~al 159 (1262)
..+..+.++++++.+++.+..+. .+..||||||||++|||+|
T Consensus 104 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 104 ---------------------------------KAKIKARVEELLELVQLEGLGDR-----YPNQLSGGQRQRVALARAL 145 (237)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHHHHHHHH
Confidence 00012235678899999876664 4457999999999999999
Q ss_pred hcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 160 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
+.+|++++|||||+|||+.++..+.+.|++..+ +.+.+|++++|+.+++.+.||++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999998644 32456677889989999999999999999999999987764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-32 Score=309.36 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=166.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.++++|++++++.+ +.++|+|+|+++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 78999999999753 3469999999999999999999999999999999999766 4589999999886
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS-------LVGLPG 841 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 841 (1262)
.. ..+++.+++++|...++. -|+++||.++. ++.++ +.+.++++.+||++.... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 346778899999887765 69999998752 23333 337889999999875443 4453 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.+.||||||||++|||+|++|.++++|||||.|||+.|.+++++.|.+.++ |+|+|++||+.. -.+.||+++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIi 543 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRII 543 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEE
Confidence 678999999999999999999999999999999999999999999988764 899999999876 567899854
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=294.67 Aligned_cols=206 Identities=24% Similarity=0.298 Sum_probs=160.5
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478889987763 2469999999999999999999999999999999999631124689999999875
Q ss_pred Cc---ccccc-eEEEecCCCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000838 772 KH---ETFAR-ISGYCEQNDIHSPFVTVHESLAFSAWLRLA----PEVDSETRKMFIEEIMELVELN-PLRQSLVGLPGV 842 (1262)
Q Consensus 772 ~~---~~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 842 (1262)
.. ...++ .++|++|++.+++.+|+.+++.+....... .+....+..++++++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 32 12222 478999999999999999998875432110 1112223345678899999997 34555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fd~~ 915 (1262)
.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.. +... .|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i 222 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYV 222 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEE
Confidence 2499999999999999999999999999999999999999999999998779999999999753 2223 4654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=282.61 Aligned_cols=153 Identities=25% Similarity=0.431 Sum_probs=134.1
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEecCCC---CCCCC
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH----ETFARISGYCEQND---IHSPF 792 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 792 (1262)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 7999999999999999999999999999999999876 458999999987542 12456799999984 57788
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 872 (1262)
+|++||+.+... ||+|||||++|||||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 873 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 873 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+..|+.
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v 174 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRI 174 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEE
Confidence 999999999999999999777899999999974 555666764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-32 Score=273.24 Aligned_cols=182 Identities=26% Similarity=0.427 Sum_probs=158.9
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEecCCCCCCCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPF 792 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 792 (1262)
+.+.+|+|+|.++++|.+++++|||||||||||.++++... ..+|+|+++|.+... ....+.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 46789999999999999999999999999999999998776 458999999998643 4566778888999888889
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCC
Q 000838 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872 (1262)
Q Consensus 793 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 872 (1262)
+||+|-+.|+......... .++.+..++++++.++|.+..|+.. .+||||||||.-||+.++++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 9999999997433222222 3445567999999999999998874 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000838 873 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 905 (1262)
Q Consensus 873 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 905 (1262)
++||.....++|+.||+++++ |+||+++.||.+
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 999999999999999999977 999999999986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=296.40 Aligned_cols=201 Identities=25% Similarity=0.273 Sum_probs=158.9
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc-
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP- 770 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 770 (1262)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 467888887763 2358999999999999999999999999999999999876 458999999875
Q ss_pred ----CCc---c----cccceEEEecCCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000838 771 ----KKH---E----TFARISGYCEQNDI--HSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSL 836 (1262)
Q Consensus 771 ----~~~---~----~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 836 (1262)
... . ..++.++|++|++. +.+.+|+.||+.+..... .. ......++.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999974 345679999987542211 11 111233456788999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhh
Q 000838 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 837 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+..|+.
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999975 455567774
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-32 Score=299.86 Aligned_cols=195 Identities=25% Similarity=0.384 Sum_probs=148.8
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46777776531 12458999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKM-----FIEEIMELV--ELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 843 (1262)
..+++.++|++|++.+++ .||.||+.+... ........+ ..+++++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987765 699999976421 111111110 112333333 333333332 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +.+|+.
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v 206 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRI 206 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEE
Confidence 799999999999999999999999999999999999999999999986 48999999999863 3 457764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=295.16 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=154.7
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 467888888763 2469999999999999999999999999999999999876 45899999872
Q ss_pred CcccccceEEEecCCCCCCCC--CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 772 KHETFARISGYCEQNDIHSPF--VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 772 ~~~~~~~~~~~v~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
+.++|++|++.+++. .|+.+++.+. .... ++.+.++++.+|+.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877765 3777776431 1111 234678999999988777653 4799999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+..|+++
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~ 192 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVL 192 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEE
Confidence 99999999999999999999999999999999999999998765 899999999975 5566778753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=283.48 Aligned_cols=177 Identities=20% Similarity=0.302 Sum_probs=137.1
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
|..+-++|+++.++ +.++++++++|-|.-...++|+||||.||||||++|.|...+ ..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 44566778887764 356789999999999999999999999999999999998774 35654322
Q ss_pred cCCcccccceEEEecCCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000838 770 PKKHETFARISGYCEQND--IHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLST 847 (1262)
Q Consensus 770 ~~~~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 847 (1262)
.+-.+|+..|.. .+-..-|+-|.|.-.. +.+.++ +...|-.+||...+++.- +..|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 233578877753 2334557777664221 122222 456788899998888763 568999
Q ss_pred HHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 848 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 905 (1262)
|||-||++|.--++.|+||||||||++||..+...+.+.|++. ...||+++||.+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 9999999999999999999999999999999999998888775 457999999864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=301.13 Aligned_cols=197 Identities=21% Similarity=0.340 Sum_probs=154.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|..+|. ...+|+|+++|.++... ..++.++|++|++.+++. ||.||+.++..
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 125 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPR 125 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHH
Confidence 47999999999999999999998741 01289999999887531 124579999999887774 99999998754
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.... ..+...+++++++.+||.+...... ++.+..||||||||+
T Consensus 126 ~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv 172 (267)
T PRK14235 126 IHGLARS--------------------------------KAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRL 172 (267)
T ss_pred hcccccc--------------------------------hHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHH
Confidence 3221000 0011234567888999964211111 245668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++...||++++|++|+++..|+.+++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998642 3 5677789999999999999999999999999988765
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-32 Score=296.81 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=157.8
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCc
Confidence 357889999887421 12358999999999999999999999999999999999876 458999999986
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc--CCcccccccccCCCCCCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV--ELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~l 845 (1262)
... ...++.++|++|++.+++ .|+.||+.+...............+..++++++.+ |+.+..+.. +..|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 234567999999988776 69999998643210000000011112256777777 676655554 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++. + +..|++
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i 218 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQI 218 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEE
Confidence 99999999999999999999999999999999999999999999865 6899999999863 3 447764
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=299.49 Aligned_cols=197 Identities=21% Similarity=0.318 Sum_probs=154.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|..+|.. ..+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 111 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLK 111 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHH
Confidence 479999999999999999999986410 1289999999887421 224579999999889999999999988654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++... .++.+++++++++.+||.+...... +..+.+|||||||||
T Consensus 112 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 157 (258)
T PRK14241 112 LNGVRN---------------------------------KKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRL 157 (258)
T ss_pred hcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHH
Confidence 321000 0011234567788888842111111 245668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEec------CCeEEEe
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLS------DGQIVYQ 227 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~------~G~i~~~ 227 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|++++ ++ ++|++++|+.+++.+.||++++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK--QD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999999999999999874 23 567778999999999999999996 8999999
Q ss_pred cCcchHH
Q 000838 228 GPRELVL 234 (1262)
Q Consensus 228 G~~~~~~ 234 (1262)
|+++++.
T Consensus 235 ~~~~~~~ 241 (258)
T PRK14241 235 DDTEKIF 241 (258)
T ss_pred CCHHHHH
Confidence 9987763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=294.13 Aligned_cols=205 Identities=22% Similarity=0.271 Sum_probs=160.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~~~g 768 (1262)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887763 2469999999999999999999999999999999999643 1 12589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
.+... ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+++.+....... ..+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87532 2345679999999988875 99999987643221 11233345567888999988542211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+.
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i 215 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYT 215 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEE
Confidence 7999999999999999999999999999999999999999999999864 899999999975 455555553
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=298.36 Aligned_cols=195 Identities=18% Similarity=0.290 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCC---CCCCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGK---LDSSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~---~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|. .++. ..+|+|.++|.++... ..++.++|++|++.+++ .|+.||+.++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~ 108 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGL 108 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHH
Confidence 4799999999999999999997 3431 1289999999987532 12457999999987776 69999999865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchh
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 152 (1262)
..++... .++.++.++++++.+||.+...... ++.+..||||||||
T Consensus 109 ~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 154 (250)
T PRK14245 109 RVNGVKD---------------------------------NAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQR 154 (250)
T ss_pred HHcCCCc---------------------------------HHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHH
Confidence 4321100 0001234567888899865322111 24567899999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ ++|++++|+.+++.+.||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999863 33 567778999999999999999999999999999887
Q ss_pred HH
Q 000838 233 VL 234 (1262)
Q Consensus 233 ~~ 234 (1262)
+.
T Consensus 232 ~~ 233 (250)
T PRK14245 232 IF 233 (250)
T ss_pred Hh
Confidence 64
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=293.66 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=160.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC----eeEEEEEEC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGSIKIS 767 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~----~~~G~i~~~ 767 (1262)
.+.++++++++. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. ...|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 467888887763 356999999999999999999999999999999999986532 122555555
Q ss_pred CccCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000838 768 GYPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSLVGLP 840 (1262)
Q Consensus 768 g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 840 (1262)
|.+.. ....++.++|++|++.+++.+|+.||+.+...... ....++.++.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 55532 12345679999999999999999999988643321 1123334456888999999864 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.+|+.+
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~ 223 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVA 223 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999864 699999999975 4556777753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=296.65 Aligned_cols=194 Identities=18% Similarity=0.272 Sum_probs=154.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC---CCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD---SSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~---~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+++ .||+||+.++...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~ 105 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKL 105 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhh
Confidence 479999999999999999999975 45 899999999876432 2457999999988876 6999999986533
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
++.... ..+.+.+++++++.++|.+...... ++.++.||||||||++
T Consensus 106 ~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 106 HGMIKN--------------------------------KDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLC 152 (246)
T ss_pred cCcccC--------------------------------hHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHH
Confidence 210000 0011234567889999953211111 2456789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++. . ++++++++|+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999998863 2 456777899999999999999999999999999987753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=299.71 Aligned_cols=193 Identities=24% Similarity=0.356 Sum_probs=156.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++..-..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~- 105 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL- 105 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhh-
Confidence 47999999999999999999999988 999999998764322 23569999999888888999999988531000
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
..+.. ...+..+.++++++.+||++..++ .+..||||||||++|||
T Consensus 106 -~~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 106 -SLWGR----------------------------LSAEDNARVNQAMEQTRINHLADR-----RLTDLSGGQRQRAFLAM 151 (255)
T ss_pred -hhccC----------------------------CCHHHHHHHHHHHHHcCCHHHHcC-----CcccCCHHHHHHHHHHH
Confidence 00000 000112345678899999877664 45679999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
|++.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++.+.||++++|++|+++..|+.+++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999988643 3 45677789999999999999999999999999987765
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=293.40 Aligned_cols=205 Identities=27% Similarity=0.305 Sum_probs=155.9
Q ss_pred EEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 45788887763 24699999999999999999999999999999999998421146899999998753
Q ss_pred c---cc-ccceEEEecCCCCCCCCCCHHHHHHHHHH-hhcC-C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000838 773 H---ET-FARISGYCEQNDIHSPFVTVHESLAFSAW-LRLA-P--EVDSETRKMFIEEIMELVELN-PLRQSLVGLPGVN 843 (1262)
Q Consensus 773 ~---~~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~-~~~~-~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 843 (1262)
. .. .++.++|++|++.+++.+|+.+++.+... ++.. . .......++.++++++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 2 11 23568999999988888887776653211 1100 0 011122345677889999985 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-hhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES-FDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-fd~~ 915 (1262)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. +... .|++
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i 216 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYV 216 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEE
Confidence 699999999999999999999999999999999999999999999998778999999999752 2222 4654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=295.71 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=154.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCC--CCCCceeEEEEECCccCCCCcc----cceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL--DSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~--~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|.. +|+ +|+|.++|.++..... +..++|++|++.+++.+|++||+.+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~ 104 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNA 104 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHH
Confidence 47999999999999999999995 566 9999999998754321 23489999999999999999999886532
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCccc-ccccccchh
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIR-GISGGQKKR 152 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSGGqkqR 152 (1262)
..... .... ....+..++++++++.+||++ ..+. .+. +||||||||
T Consensus 105 ~~~~~------------------~~~~---------~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~LS~G~~qr 152 (243)
T TIGR01978 105 RRSAR------------------GEEP---------LDLLDFLKLLKAKLALLGMDEEFLNR-----SVNEGFSGGEKKR 152 (243)
T ss_pred hhccc------------------cccc---------ccHHHHHHHHHHHHHHcCCchhhccc-----ccccCcCHHHHHH
Confidence 11000 0000 000112235678899999974 4553 333 499999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHh-ccceEEecCCeEEEecCcc
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNL-FDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~-~D~i~vl~~G~i~~~G~~~ 231 (1262)
++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|++++|+.+++... ||++++|++|++++.|+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-P-DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 9999999999999999999999999999999999998743 3 45677789999999888 8999999999999999887
Q ss_pred hH
Q 000838 232 LV 233 (1262)
Q Consensus 232 ~~ 233 (1262)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=298.71 Aligned_cols=193 Identities=25% Similarity=0.396 Sum_probs=156.3
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~- 104 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR- 104 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh-
Confidence 47999999999999999999999988 999999998875432 23469999999877888999999988531000
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
..+ . ....+..+++.++++.+||.+..++ .+..||||||||++|||
T Consensus 105 -~~~-------------~---------------~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 105 -SLW-------------A---------------GDSPHDAAVVDRALARTELSHLADR-----DMSTLSGGERQRVHVAR 150 (256)
T ss_pred -hhc-------------c---------------CCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHH
Confidence 000 0 0000112346778999999876664 45679999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
||+.+|++++|||||+|||+.++..+.+.|+++.+ + +++|++++|+.+++.+.||++++|++|++++.|+.++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999999998643 3 45677789999999999999999999999999987765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=299.54 Aligned_cols=207 Identities=24% Similarity=0.312 Sum_probs=162.2
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGSIKISG 768 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~~~g 768 (1262)
.+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578999998763 24699999999999999999999999999999999997642 14589999999
Q ss_pred ccCCc-----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000838 769 YPKKH-----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAP---------EVD-SETRKMFIEEIMELVELNPLR 833 (1262)
Q Consensus 769 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 833 (1262)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 134567999999988877 59999999864322100 011 122345678899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhh
Q 000838 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFD 913 (1262)
Q Consensus 834 ~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd 913 (1262)
+.... ..+.+||||||||++||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+..|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12467999999999999999999999999999999999999999999999876 589999999975 4566778
Q ss_pred hh
Q 000838 914 EA 915 (1262)
Q Consensus 914 ~~ 915 (1262)
+.
T Consensus 268 ~i 269 (305)
T PRK14264 268 QT 269 (305)
T ss_pred EE
Confidence 74
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=293.85 Aligned_cols=203 Identities=21% Similarity=0.214 Sum_probs=161.6
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEEC
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGSIKIS 767 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~~~ 767 (1262)
..+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 4688999998773 246999999999999999999999999999999999976531 258999999
Q ss_pred CccCC-------cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000838 768 GYPKK-------HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP----LRQSL 836 (1262)
Q Consensus 768 g~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 836 (1262)
|.+.. ...+++.++|++|++.+++. |+.||+.+....... ......++.++++++.+++.+ ..+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87642 12345679999999988885 999999876433211 111222345777888887742 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 837 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999974 4666778753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=296.67 Aligned_cols=195 Identities=22% Similarity=0.349 Sum_probs=153.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.|+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~ 110 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPR 110 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHH
Confidence 47999999999999999999998751 01389999999987532 12457999999988877 899999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCccc-ccccccCCcccccccccchh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNC-ADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqkqR 152 (1262)
..+... ..+.+++++++++.+||.+. .+ .. +..+..||||||||
T Consensus 111 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~-~~-~~~~~~LS~G~~qr 155 (251)
T PRK14270 111 IHGIKD---------------------------------KKELDKIVEWALKKAALWDEVKD-DL-KKSALKLSGGQQQR 155 (251)
T ss_pred hcCCCc---------------------------------HHHHHHHHHHHHHHcCCchhhhh-Hh-hCCcccCCHHHHHH
Confidence 321100 00112345667888887431 11 11 24567899999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++||||++.+|+|++|||||+|||+.++.++.+.|++..+ + ++|++++|+.+++.+.|||+++|++|++++.|++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999999998643 3 567778899999999999999999999999999887
Q ss_pred HH
Q 000838 233 VL 234 (1262)
Q Consensus 233 ~~ 234 (1262)
+.
T Consensus 233 ~~ 234 (251)
T PRK14270 233 IF 234 (251)
T ss_pred Hh
Confidence 63
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=294.45 Aligned_cols=184 Identities=26% Similarity=0.352 Sum_probs=154.1
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEecCCCCCCCCCCHH
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPFVTVH 796 (1262)
Q Consensus 720 il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 796 (1262)
+|+|+||++++||+++|+||||||||||+++|+|..+ . +|+|.++|.+... ..+++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 2 7999999987532 23345689999998888889999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCCccee
Q 000838 797 ESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 869 (1262)
Q Consensus 797 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~-------~p~illlD 869 (1262)
||+.+.... ....+..++.++++++.+++.+..++.+ ..||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456789999999987766653 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 870 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 870 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~ 204 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVW 204 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEE
Confidence 999999999999999999999877999999999975 4666777753
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=296.14 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=152.0
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.+.. .+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4678888877631 2358999999999999999999999999999999999876 4589999999765
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCC
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV------GLPGV 842 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~ 842 (1262)
.. ..+++.++|++|++.+++. |+.||+.+... .... ..+++.++.+++.+..+... ....+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999976421 1111 12344445444443322211 01124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
..||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++. +|+|||++||++.. + +..|+.
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i 207 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKI 207 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEE
Confidence 6899999999999999999999999999999999999999999999985 58999999999853 3 457764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=300.10 Aligned_cols=190 Identities=21% Similarity=0.289 Sum_probs=156.0
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccC-CCCCCCHHHHHHHHHhccC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDN-HIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~ 76 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||.||+.++....+
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG 111 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC
Confidence 47999999999999999999999998 999999999875422 2467999999964 5778899999988653221
Q ss_pred CCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHH
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA 156 (1262)
.. .++..++++.+++.+||.+..++ .+..||||||||++||
T Consensus 112 ~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 112 IP----------------------------------REEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQRVAVA 152 (277)
T ss_pred CC----------------------------------HHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHH
Confidence 10 00112346778899999876664 4567999999999999
Q ss_pred HHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 157 ~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||+.+|+++||||||+|||+.++..+.+.|+++.+ ..+++|++++|+.+++. .||++++|++|++++.|+++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999998754 32456677899998886 69999999999999999987764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=297.31 Aligned_cols=192 Identities=22% Similarity=0.336 Sum_probs=154.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCcc-----CCCCc-------ccceEEeeccccC--CCCCCCHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHN-----MGEFV-------PQRTAAYISQHDN--HIGEMTVRE 66 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~-----~~~~~-------~~~~~~yv~Q~~~--~~~~lTv~e 66 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +.... .++.++|++|++. +.+.+|+.|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 110 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGG 110 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHH
Confidence 47999999999999999999999998 9999999987 54322 1346999999963 567789999
Q ss_pred HHHHHHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCccccc
Q 000838 67 TLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGI 145 (1262)
Q Consensus 67 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 145 (1262)
|+.+.....+. .. ..+.++.++++++.+++.+ ..+ +.+..|
T Consensus 111 ~i~~~~~~~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~L 152 (258)
T PRK11701 111 NIGERLMAVGA-RH--------------------------------YGDIRATAGDWLERVEIDAARID-----DLPTTF 152 (258)
T ss_pred HHHHHHHHhcc-Cc--------------------------------HHHHHHHHHHHHHHcCCChhHHh-----CCCccC
Confidence 99764321100 00 0011234677899999964 444 445679
Q ss_pred ccccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000838 146 SGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIV 225 (1262)
Q Consensus 146 SGGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~ 225 (1262)
|||||||++|||||+.+|+|++|||||+|||+.++..+.+.|+++.+ ..+.+|++++|+.+++.+.||++++|++|+++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998654 33567778999999999999999999999999
Q ss_pred EecCcchHH
Q 000838 226 YQGPRELVL 234 (1262)
Q Consensus 226 ~~G~~~~~~ 234 (1262)
+.|+++++.
T Consensus 232 ~~~~~~~~~ 240 (258)
T PRK11701 232 ESGLTDQVL 240 (258)
T ss_pred EeCCHHHHh
Confidence 999987753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=279.17 Aligned_cols=161 Identities=28% Similarity=0.435 Sum_probs=137.6
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 46777776531 12358999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 850 (1262)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234567999999988776 4888876 899999
Q ss_pred HHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +..|+.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v 165 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRI 165 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEE
Confidence 9999999999999999999999999999999999999999877999999999975 33 566664
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=298.35 Aligned_cols=196 Identities=19% Similarity=0.316 Sum_probs=153.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCC--CCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDS--SLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~--~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++| ....+|+|.++|.++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 118 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPR 118 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHH
Confidence 4799999999999999999999863 111389999999987421 224579999999888875 99999988653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+... .++..++++++++.+|+.+...... +..+.+||||||||+
T Consensus 119 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 119 IHGTKN---------------------------------KKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRL 164 (259)
T ss_pred hcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHH
Confidence 321000 0011233566788888854211111 245668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++. ++ .++++++|+.+++.+.||++++|++|+++..|+++++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999863 23 5677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 242 ~ 242 (259)
T PRK14274 242 F 242 (259)
T ss_pred h
Confidence 4
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=298.31 Aligned_cols=196 Identities=17% Similarity=0.250 Sum_probs=152.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD--SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~ 119 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVR 119 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHh
Confidence 479999999999999999999986 2101289999999887421 12457999999987777 899999988653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.... .. .++.+++++++++.+++.+...... ++.+..||||||||+
T Consensus 120 ~~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 120 LFEK-LS--------------------------------RAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRL 165 (260)
T ss_pred hcCC-CC--------------------------------HHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHH
Confidence 2110 00 0011234667888888743211111 245568999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|++++|+.+++.+.+|++++|++|+++..|+.+++
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 23 5677789999999999999999999999999998776
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 243 ~ 243 (260)
T PRK10744 243 F 243 (260)
T ss_pred H
Confidence 3
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=306.05 Aligned_cols=204 Identities=27% Similarity=0.374 Sum_probs=175.9
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
.-+.++|++.++. ..++|+||||++++||++||+|.||||||||+|+|+|..+ +.+|+|.+||++
T Consensus 7 ~ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~ 71 (500)
T COG1129 7 PLLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKP 71 (500)
T ss_pred ceeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEE
Confidence 3566888887763 4579999999999999999999999999999999999876 468999999987
Q ss_pred CCc----ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000838 771 KKH----ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRL-APEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 771 ~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 845 (1262)
... +....-++.|.|+..+.|++||.||+.++...+. ..-.+.+..++++.++|+.+++....++.++ +|
T Consensus 72 ~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~L 146 (500)
T COG1129 72 VAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DL 146 (500)
T ss_pred ccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hC
Confidence 642 2234568999999999999999999987755443 2335667777889999999999644666654 69
Q ss_pred CHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 846 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
|.||||.|.|||||..+++||+|||||+.|+......+.+.+++++++|.+||++||... |+++..|++
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dri 215 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRI 215 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEE
Confidence 999999999999999999999999999999999999999999999999999999999875 899999984
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=296.59 Aligned_cols=197 Identities=20% Similarity=0.298 Sum_probs=154.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD--SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|+++ |....+|+|.++|.++... ..++.++|++|++.+++.+|++||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHH
Confidence 479999999999999999999985 3111289999999887431 224679999999989998999999987653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+. .+ ..+.+++++++++.+|+.+...... +..+..||||||||+
T Consensus 112 ~~~~---~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl 157 (252)
T PRK14256 112 LNGR---VN------------------------------RSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRL 157 (252)
T ss_pred hcCC---CC------------------------------HHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHH
Confidence 2210 00 0011234567788888854211111 135668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998742 3 5677789999999999999999999999999998775
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 3
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=296.81 Aligned_cols=196 Identities=27% Similarity=0.344 Sum_probs=151.3
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++. .++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 46777776631 11358999999999999999999999999999999999876 458999999976532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKM-----FIEEIMELV--ELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 843 (1262)
...++.++|++|++.+++ .|++||+.+... ........+ .+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999988876 699999977431 111111111 133444444 444444433 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +|+|||++||++. ++ +..|+++
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~ 207 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIV 207 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEE
Confidence 799999999999999999999999999999999999999999999986 4899999999985 34 4477753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=340.75 Aligned_cols=196 Identities=30% Similarity=0.357 Sum_probs=164.4
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++++++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46899999999852 12469999999999999999999999999999999999877 458999999988
Q ss_pred CC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
++ ...+++.+|||+|++.+++ -|++||+.++. + .+. ++++++++..++.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 3467889999999999886 59999998742 1 222 236778888887654 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Ii 655 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIY 655 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEE
Confidence 4679999999999999999999999999999999999999999999876 589999999974 667889864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=295.16 Aligned_cols=189 Identities=23% Similarity=0.269 Sum_probs=153.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCC----CCceeEEEEECCccCCCCcc-cceEEeeccccC--CCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDS----SLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDN--HIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~----~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+| + +|+|.++|.++..... ++.++||+|++. +.+..|+.+++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 107 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL 107 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHH
Confidence 4799999999999999999999988 6 8999999998753322 357999999974 4466799999876442
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc---cccccccCCcccccccccc
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN---CADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqk 150 (1262)
..+.. ...+++.++++.+||.+ ..+ +.+..||||||
T Consensus 108 ~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~Gq~ 146 (254)
T PRK10418 108 ALGKP------------------------------------ADDATLTAALEAVGLENAARVLK-----LYPFEMSGGML 146 (254)
T ss_pred HcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhh-----cCCcccCHHHH
Confidence 21100 00134567889999976 233 45568999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+.+|++++|++|++++.|+.
T Consensus 147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 225 (254)
T PRK10418 147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999987543 345677789999999999999999999999999998
Q ss_pred chHH
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~~~ 234 (1262)
+++.
T Consensus 226 ~~~~ 229 (254)
T PRK10418 226 ETLF 229 (254)
T ss_pred HHHh
Confidence 7763
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=290.88 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=152.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcccceEEeeccccCCC--CCCCHHHHHHHHHhccCCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHI--GEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~--~~lTv~e~l~f~~~~~~~~ 78 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. .++.++|++|++.++ ..+|++||+.++.... .+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~~ 81 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH-IG 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccc-cc
Confidence 47999999999999999999999988 9999999987643 245799999997653 3479999998753210 00
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
.... ...+.++.++++++.+|+++..++ .+.+||||||||++||||
T Consensus 82 -~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lara 127 (223)
T TIGR03771 82 -WLRR----------------------------PCVADFAAVRDALRRVGLTELADR-----PVGELSGGQRQRVLVARA 127 (223)
T ss_pred -cccC----------------------------CcHHHHHHHHHHHHHhCCchhhcC-----ChhhCCHHHHHHHHHHHH
Confidence 0000 000112346778999999876664 445799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++++++|+.+++.+.||+++++ +|++++.|+.+++.
T Consensus 128 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-A-GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999999999999999999999999998643 3 456677899999999999999999 89999999887653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=297.32 Aligned_cols=197 Identities=28% Similarity=0.405 Sum_probs=148.4
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+... +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 467777665310 12458999999999999999999999999999999999876 458999999977532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS-------LVGLPGVN 843 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~ 843 (1262)
...++.++|++|++.+++ .|++||+.+.... ...+. .++.++..++.+..+. ... ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHH----HHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 233467999999988776 6999999874211 11111 2222333333221111 111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||++.. + +.+|+++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~ 208 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIA 208 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEE
Confidence 799999999999999999999999999999999999999999999987 78999999999763 3 4677753
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=254.87 Aligned_cols=180 Identities=26% Similarity=0.357 Sum_probs=154.5
Q ss_pred CceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC------c---ccccceEEEecCC
Q 000838 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK------H---ETFARISGYCEQN 786 (1262)
Q Consensus 716 ~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~------~---~~~~~~~~~v~q~ 786 (1262)
+...+|.||+++.+.||.+.++||||||||||++.|.-... +.+|+..|.|...+ . ...|+.+|.|+|+
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 34568999999999999999999999999999999975444 45798888775321 1 2467889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000838 787 DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 866 (1262)
Q Consensus 787 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~il 866 (1262)
-.++|.+||.|||.-+. ++. .+.++++.+.+..++++.+.|.+.+|.. +-.|||||+|||+|||||+.+|++|
T Consensus 91 y~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvl 163 (242)
T COG4161 91 YNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred hccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEE
Confidence 99999999999987543 221 2355667777889999999999999986 3479999999999999999999999
Q ss_pred ceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000838 867 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 904 (1262)
Q Consensus 867 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 904 (1262)
++||||+.|||+-..++.++|++++..|.|-+++||..
T Consensus 164 lfdeptaaldpeitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 164 LFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred eecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 99999999999999999999999999999999999964
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=294.51 Aligned_cols=187 Identities=25% Similarity=0.367 Sum_probs=153.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc---cceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
+++|+||||||||||+++|+|..+ . +|+|.++|.++..... ++.++|++|++.+++.+|++||+.+......
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~- 98 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKT- 98 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCC-
Confidence 479999999999999999999985 3 7999999998754322 3468999999888888999999987532100
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
. ..+..++++++++.+||.+..+. .++.||||||||++|||
T Consensus 99 --~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~ 139 (248)
T PRK03695 99 --R--------------------------------TEAVASALNEVAEALGLDDKLGR-----SVNQLSGGEWQRVRLAA 139 (248)
T ss_pred --C--------------------------------cHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHH
Confidence 0 00112346778999999876663 45679999999999999
Q ss_pred HHhc-------CCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 158 MMVG-------PALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 158 al~~-------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||+. +|++++|||||+|||+.++..+.+.|+++.+ + +++|++++|+.+++.++||++++|++|++++.|+.
T Consensus 140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 217 (248)
T PRK03695 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR 217 (248)
T ss_pred HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9997 6799999999999999999999999998753 3 45677789999999999999999999999999987
Q ss_pred chH
Q 000838 231 ELV 233 (1262)
Q Consensus 231 ~~~ 233 (1262)
+++
T Consensus 218 ~~~ 220 (248)
T PRK03695 218 DEV 220 (248)
T ss_pred HHH
Confidence 765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=333.07 Aligned_cols=193 Identities=25% Similarity=0.400 Sum_probs=154.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.+||+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|. .||+|||.++..-.
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~a-- 430 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDA-- 430 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCC--
Confidence 37999999999999999999999998 999999999987654 3578999999987776 89999999975310
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHH
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~ 157 (1262)
..+...++++.. ...+.++ .+++.+||.|| +.+..||||||||++|||
T Consensus 431 --t~eei~~a~k~a---------------------------~~~d~I~--~lp~g~dt~vg-e~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 431 --TDEEIEEALKLA---------------------------NAHEFIA--NLPDGYDTIVG-ERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred --CHHHHHHHHHHh---------------------------ChHHHHH--hCcccccceec-CCCccCCHHHHHHHHHHH
Confidence 001111111100 1122233 45788999999 456679999999999999
Q ss_pred HHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|++.+|+|++||||||+||+.+...+.+.++++. +++|+++ ++|..+.+.+ ||+|+||++|++++.|+++++.+
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998654 3456666 7777665555 99999999999999999999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=296.03 Aligned_cols=196 Identities=20% Similarity=0.290 Sum_probs=159.1
Q ss_pred EEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4678999988742 12358999999999999999999999999999999999875 369999999876
Q ss_pred Cc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL------PGV 842 (1262)
Q Consensus 772 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 842 (1262)
.. ..+++.++|++|++.+++ .|++||+.... .... +.+.++++.+||.+..+..++. +..
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 32 345678999999999887 59999996321 1121 2367788889998766554321 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
..||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+ ...|++
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri 206 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRF 206 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEE
Confidence 5699999999999999999999999999999999999999999999875 4899999999984 34 457875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=340.34 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=149.4
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|+ .|++|||.++.. .
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~-~--- 553 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP-L--- 553 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC-C---
Confidence 7999999999999999999999998 999999999987654 3578999999997764 699999998532 0
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
..+ +.....+..+ .++.+ -.+++..||.+|+. ..+||||||||++||||
T Consensus 554 -~~e---~i~~al~~a~------------------------l~~~i--~~lp~G~dt~ige~-G~~LSGGQrQRialARA 602 (686)
T TIGR03797 554 -TLD---EAWEAARMAG------------------------LAEDI--RAMPMGMHTVISEG-GGTLSGGQRQRLLIARA 602 (686)
T ss_pred -CHH---HHHHHHHHcC------------------------cHHHH--HhccccccccccCC-CCCCCHHHHHHHHHHHH
Confidence 001 0110000000 11111 13567889999864 56899999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+++|+|++||||||+||+.++.++.+.|++. ++ |+++++|+.+ ..+.||+|++|++|+++++|+++++.+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~~-~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRLS-TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecChH-HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999863 34 4555777654 456799999999999999999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=323.37 Aligned_cols=201 Identities=24% Similarity=0.256 Sum_probs=162.0
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECC-----
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG----- 768 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g----- 768 (1262)
.++|+++++. ++.+|+|+||++++||+++|+|||||||||||++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 4678887762 3469999999999999999999999999999999999752114589999972
Q ss_pred ------------------ccC----------Cc---ccccceEEEecCC-CCCCCCCCHHHHHHHHHHhhcCCCCCHHHH
Q 000838 769 ------------------YPK----------KH---ETFARISGYCEQN-DIHSPFVTVHESLAFSAWLRLAPEVDSETR 816 (1262)
Q Consensus 769 ------------------~~~----------~~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~ 816 (1262)
.+. .. ...++.++|++|+ +.+++.+|+.|++.+...... .+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 111 00 1234578999997 678888999999988654321 233444
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 000838 817 KMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 895 (1262)
Q Consensus 817 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~ 895 (1262)
++++.++++.+||.+..++.+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999987776653 579999999999999999999999999999999999999999999999654 89
Q ss_pred EEEEEecCCCHHHHHHhhhhc
Q 000838 896 TVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 896 tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
|||++|||+. .+.+.+|+++
T Consensus 221 tviivtHd~~-~~~~~~d~i~ 240 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAI 240 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEE
Confidence 9999999975 3556778754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=295.85 Aligned_cols=196 Identities=21% Similarity=0.338 Sum_probs=152.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD--SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 111 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLR 111 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHH
Confidence 479999999999999999999853 4211389999999887421 22457999999987776 899999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+... .+...+.++++++.+++.+...... ++.+..||||||||+
T Consensus 112 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 157 (252)
T PRK14239 112 LKGIKD---------------------------------KQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRV 157 (252)
T ss_pred HcCCCc---------------------------------HHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHH
Confidence 321100 0001223556778888743211111 245678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|++.. .+ ++|++++|+.+++.+.||++++|++|++++.|+.+++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK--DD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh--hC-CeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999864 23 5677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 3
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=331.11 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=166.1
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++. +++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999998842 12358999999999999999999999999999999999876 458999999987
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR------QSLVGLPG 841 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~~~ 841 (1262)
.+. ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.++++++.+++.+.. |+.+|. .
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~ 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-G 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-C
Confidence 643 456788999999998886 59999998752 1222 23477888888887653 455554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 842 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 842 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
...||||||||++||||++++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++ ....+|+.+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~ 544 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRIC 544 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEE
Confidence 56799999999999999999999999999999999999999999999885 4899999999985 456788854
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=295.94 Aligned_cols=197 Identities=20% Similarity=0.332 Sum_probs=153.4
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC--CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD--SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+++. ||+||+.++..
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~ 111 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPK 111 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHH
Confidence 479999999999999999999985 2101289999999886432 124679999999888875 99999988643
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++.... ..+.++.++++++.+||.+...+.. +..+.+||||||||+
T Consensus 112 ~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 112 LHGLAKN--------------------------------KKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRL 158 (251)
T ss_pred hcCCCCC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHH
Confidence 2211000 0011223567789999865322222 245678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. + +.+|++++|+..++.+.||++++|++|++++.|+++++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 3 45677789999999999999999999999999988765
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 236 ~ 236 (251)
T PRK14244 236 F 236 (251)
T ss_pred h
Confidence 3
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=332.66 Aligned_cols=200 Identities=24% Similarity=0.298 Sum_probs=165.6
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..++++|++++++. ..+.+|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 46999999998842 12469999999999999999999999999999999999877 458999999988
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 840 (1262)
.+. ..+++.++|+||++.+++ -|++||+.++. +...++ ++++++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 643 456788999999999886 69999998641 111232 23667777777554 346666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
..+||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii 549 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEIL 549 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEE
Confidence 46799999999999999999999999999999999999999999999875 4799999999984 678899864
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=295.02 Aligned_cols=196 Identities=20% Similarity=0.344 Sum_probs=153.6
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..+|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~ 109 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPR 109 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 47999999999999999999998741 01289999999887531 22457999999988877 899999998653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+... .++.++.++++++.+|+.+..+.. .++.+.+||||||||+
T Consensus 110 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 110 IHGVKS---------------------------------KHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRL 155 (250)
T ss_pred HcCCCc---------------------------------HHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHH
Confidence 221100 001122355677888875421111 2356678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|++.. ++ +++++++|+.+++.+.+|++++|++|+++..|+++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS--EN-YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh--cC-cEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999864 23 5677789999999999999999999999999998776
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 233 ~ 233 (250)
T PRK14262 233 V 233 (250)
T ss_pred H
Confidence 4
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=319.54 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=86.4
Q ss_pred HHHHhCCccc-ccccccCCcccccccccchhhHHHHHHhcCC--eEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEE
Q 000838 123 YLKVLGLDNC-ADILVGDEMIRGISGGQKKRVTTGEMMVGPA--LAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAV 199 (1262)
Q Consensus 123 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqkqRvsiA~al~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~i 199 (1262)
.+..+||... .+ +.+.+|||||+|||.||++|..+| ++++|||||+|||+.....+++.|+++.+ . +.+|
T Consensus 470 ~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~-G~TV 542 (924)
T TIGR00630 470 FLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-L-GNTV 542 (924)
T ss_pred hHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-C-CCEE
Confidence 3778888653 34 556789999999999999999986 89999999999999999999999998753 3 4456
Q ss_pred EEecCCChhHHHhccceEEe------cCCeEEEecCcchH
Q 000838 200 ISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELV 233 (1262)
Q Consensus 200 i~~~~~~~~~~~~~D~i~vl------~~G~i~~~G~~~~~ 233 (1262)
++++|+.+++. .||+|++| ++|++++.|+++++
T Consensus 543 IvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 543 IVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHH
Confidence 66888877764 89999999 89999988876553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=296.51 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=154.5
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~ 126 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALE 126 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHH
Confidence 47999999999999999999998631 01289999999987431 12457999999987776 699999998653
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+.. ..++.+..+.++++.++|.+..+... ++.++.||||||||+
T Consensus 127 ~~~~~---------------------------------~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl 172 (267)
T PRK14237 127 RAGVK---------------------------------DKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRL 172 (267)
T ss_pred hcCCC---------------------------------CHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHH
Confidence 22100 00011234567788888864322222 256678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ ++|++++|+.+++.++||++++|++|++++.|+++++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 23 5677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 250 ~ 250 (267)
T PRK14237 250 F 250 (267)
T ss_pred h
Confidence 3
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=331.97 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=165.7
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 46899999998841 2358999999999999999999999999999999999877 458999999987
Q ss_pred CC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
++ ...+++.++||+|++.+++. |++||+.++. +.+ +++++++++.+|+.+. .|+.+|.
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e- 472 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE- 472 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-
Confidence 64 34678899999999999885 9999998752 122 2336778888887653 3455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
...+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||++ +....+|+++
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii 545 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTIL 545 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999998864 69999999998 4677889864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=296.66 Aligned_cols=196 Identities=24% Similarity=0.347 Sum_probs=154.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCC--CceeEEEEECCccCCCC----cccceEEeeccccCCCCCCCHHHHHHHHHhc
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSS--LKVSGRVTYNGHNMGEF----VPQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~--~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~ 74 (1262)
+++|+||||||||||+++|+|+++|. ...+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++...
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~ 127 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRA 127 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHh
Confidence 47999999999999999999998751 01289999999887532 22467999999988887 8999999886432
Q ss_pred cCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhH
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvs 154 (1262)
... .. ..+.+..+.++++.+||.+..++.. ++.+..||||||||++
T Consensus 128 ~~~-~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 128 HKL-VP--------------------------------RKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLC 173 (276)
T ss_pred ccC-CC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHH
Confidence 110 00 0011223456788888875332222 2456789999999999
Q ss_pred HHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHH
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 iA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~ 234 (1262)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+.||++++|++|++++.|+++++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999998642 3 57777899999999999999999999999999988764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=330.91 Aligned_cols=192 Identities=25% Similarity=0.301 Sum_probs=160.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc------ccceEEeecccc--CCCCCCCHHHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHD--NHIGEMTVRETLAFSA 72 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~ 72 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .+++.+||.||+.+..
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999988 999999999875432 245799999986 5888999999998865
Q ss_pred hccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc-ccccccccCCcccccccccch
Q 000838 73 RCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD-NCADILVGDEMIRGISGGQKK 151 (1262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkq 151 (1262)
..++... ..+.+++++++++.+||+ +..+ ++++.|||||||
T Consensus 429 ~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~~-----~~~~~LSgGqrQ 470 (623)
T PRK10261 429 RVHGLLP---------------------------------GKAAAARVAWLLERVGLLPEHAW-----RYPHEFSGGQRQ 470 (623)
T ss_pred HHcCCCC---------------------------------HHHHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHH
Confidence 4321100 001234567889999996 4555 456789999999
Q ss_pred hhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcc
Q 000838 152 RVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 231 (1262)
Q Consensus 152 RvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~ 231 (1262)
||+|||||+.+|++|||||||+|||+.++.++++.|+++.+. .+.+|+++||+.+++..+||+|++|++|++++.|+++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~-~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD-FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999987643 3456777999999999999999999999999999988
Q ss_pred hHH
Q 000838 232 LVL 234 (1262)
Q Consensus 232 ~~~ 234 (1262)
++.
T Consensus 550 ~i~ 552 (623)
T PRK10261 550 AVF 552 (623)
T ss_pred HHh
Confidence 864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=297.43 Aligned_cols=191 Identities=21% Similarity=0.316 Sum_probs=150.1
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC-----CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD-----SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~-----~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f 70 (1262)
+++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++.+++ .||+||+.+
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~ 116 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAF 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhh
Confidence 479999999999999999999987 35 89999999886421 22457999999988887 599999998
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 150 (1262)
++..++.. + +.+++++++++.+++....+.. -++.+..||||||
T Consensus 117 ~~~~~~~~---~--------------------------------~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~ 160 (269)
T PRK14259 117 GARINGYT---G--------------------------------DMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQ 160 (269)
T ss_pred hhhhcCCc---H--------------------------------HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHH
Confidence 65432110 0 0112345567777764211111 1245678999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecC---------
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSD--------- 221 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~--------- 221 (1262)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ .+|++++|+.+++...||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEecccccccccc
Confidence 99999999999999999999999999999999999999863 23 5677789999999999999999996
Q ss_pred --CeEEEecCcchHH
Q 000838 222 --GQIVYQGPRELVL 234 (1262)
Q Consensus 222 --G~i~~~G~~~~~~ 234 (1262)
|++++.|+++++.
T Consensus 238 ~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 238 KVGYLVEFNETKKIF 252 (269)
T ss_pred ccceEEEeCCHHHHH
Confidence 6789999988774
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=287.45 Aligned_cols=191 Identities=25% Similarity=0.350 Sum_probs=165.5
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCcc------cceEEeecccc--CCCCCCCHHHHHHHHHh
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP------QRTAAYISQHD--NHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~~------~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~ 73 (1262)
++|+|+||||||||=.+|.+++++ +|+|.++|+++..... ++.+-.|+||| .+-|.+||.+-|.-+..
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 689999999999999999999976 6999999999875432 46789999996 57799999999998887
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcc-cccccccCCcccccccccchh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkqR 152 (1262)
.+.+. .+..|+.+++.+.|+..||+. .. +++++..|||||||
T Consensus 392 vh~~~--------------------------------ls~~eR~~rv~~aL~EVGLDp~~r-----~RYPhEFSGGQRQR 434 (534)
T COG4172 392 VHEPK--------------------------------LSAAERDQRVIEALEEVGLDPATR-----NRYPHEFSGGQRQR 434 (534)
T ss_pred hcCCC--------------------------------CCHHHHHHHHHHHHHHcCCChhHh-----hcCCcccCcchhhH
Confidence 65321 122345667888999999975 44 38899999999999
Q ss_pred hHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcch
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREL 232 (1262)
Q Consensus 153 vsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~ 232 (1262)
++||||++-+|++++||||||+||-..+.+|+++|+++.++ .+-.-+.|+||...+..+||+++||++|+|+++|+.++
T Consensus 435 IAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k-~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~ 513 (534)
T COG4172 435 IAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK-HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEA 513 (534)
T ss_pred HHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHH
Confidence 99999999999999999999999999999999999998664 45666779999999999999999999999999999998
Q ss_pred HH
Q 000838 233 VL 234 (1262)
Q Consensus 233 ~~ 234 (1262)
+.
T Consensus 514 if 515 (534)
T COG4172 514 VF 515 (534)
T ss_pred Hh
Confidence 74
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=334.26 Aligned_cols=193 Identities=22% Similarity=0.376 Sum_probs=150.4
Q ss_pred EEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCCC
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 2 ~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~ 78 (1262)
++|+||||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|+ .|++|||.++..-.
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~--- 444 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYARTEQ--- 444 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCCCC---
Confidence 7999999999999999999999998 999999999987654 3578999999987775 69999998853100
Q ss_pred cchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhhHHHHH
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRvsiA~a 158 (1262)
...+... ++... ...++.++ .|++..||.+|+. ...||||||||++||||
T Consensus 445 ~~~~~i~---------------------~al~~------~~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 445 YSREQIE---------------------EAARM------AYAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred CCHHHHH---------------------HHHHH------hCcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 0000000 00000 00111222 2677889999965 56799999999999999
Q ss_pred HhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchHHH
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 159 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~~~ 235 (1262)
|+++|+|++||||||+||+.++..+.+.|++.. .+ .++++++|+. +..+.||+|++|++|++++.|+++++.+
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~-~tvI~VtHr~-~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQ--KN-RTSLVIAHRL-STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CC-CEEEEEecch-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999998752 33 4455567765 4567899999999999999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=294.11 Aligned_cols=196 Identities=22% Similarity=0.361 Sum_probs=151.8
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCC--CCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDS--SLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~--~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|..++ ....+|+|.++|.++... ..++.++|++|++.+++ .|++||+.++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~ 109 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPR 109 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHH
Confidence 4799999999999999999998753 111389999999987531 12457999999988777 899999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+... ..+.++.++++++.+++.+...... ++.+..||||||||+
T Consensus 110 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv 155 (250)
T PRK14240 110 THGIKD---------------------------------KKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRL 155 (250)
T ss_pred hcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHH
Confidence 322100 0011233556677777643211111 245668999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++. ++ ++|++++|+.+++.+.||++++|++|+++..|+++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KD-YTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999863 23 5677789999999999999999999999999988765
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 3
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=332.64 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=165.2
Q ss_pred CcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 000838 690 PHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGY 769 (1262)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 769 (1262)
...++|+|+++.++. ++.+|+|+|++++|||.+||+||||||||||++.|.|..+ +.+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCE
Confidence 346999999999852 3569999999999999999999999999999999999877 45899999998
Q ss_pred cCCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCC-------cccccccccC
Q 000838 770 PKKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-------NPLRQSLVGL 839 (1262)
Q Consensus 770 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~ 839 (1262)
+++. ..+++.++||+|++.++. -|++||+.++. ++.++++ ++++++..++ .+..|+.+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecC
Confidence 8653 567889999999999988 89999999862 2233333 4444444433 3346888883
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 840 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
+...||||||||++||||++++|+||+||||||+||+.+...+++.++++. +++|+++++|+++ .....|+.+
T Consensus 462 -~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~Ii 534 (567)
T COG1132 462 -RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRII 534 (567)
T ss_pred -CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEE
Confidence 456799999999999999999999999999999999999999999999876 5789999999985 445588854
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=293.92 Aligned_cols=194 Identities=20% Similarity=0.262 Sum_probs=154.2
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|+++|.. ..+|+|+++|.++... ..++.++|++|++.++ .+|++||+.++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~ 114 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLR 114 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHh
Confidence 479999999999999999999997610 1389999999987431 2245799999998776 5999999998754
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
..+.. .+.+..++++++.++|.+..+... +..++.||||||||+
T Consensus 115 ~~~~~-----------------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv 158 (261)
T PRK14263 115 LNRYK-----------------------------------GDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRL 158 (261)
T ss_pred hcCch-----------------------------------HHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHH
Confidence 32100 001223566788888854332222 245678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEec--------CCeEE
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLS--------DGQIV 225 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~--------~G~i~ 225 (1262)
+|||||+.+|++++|||||+|||+.++.++.+.|+++. ++ +++++++|+.+++.+.||++++|+ +|+++
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KD-YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 99999999999999999999999999999999999863 23 567778999999999999999995 89999
Q ss_pred EecCcchHH
Q 000838 226 YQGPRELVL 234 (1262)
Q Consensus 226 ~~G~~~~~~ 234 (1262)
+.|+.+++.
T Consensus 236 ~~g~~~~~~ 244 (261)
T PRK14263 236 EMGPTAQIF 244 (261)
T ss_pred EeCCHHHHH
Confidence 999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=287.50 Aligned_cols=204 Identities=20% Similarity=0.249 Sum_probs=160.7
Q ss_pred cEEEEeeeEEEEecch----hhhh--ccc-cCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEE
Q 000838 691 HSLIFDEVTYSVDMPQ----EMKL--QGV-LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGS 763 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~ 763 (1262)
+.+.++|++..++... ..+. .+. ....+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 3567788766655421 1111 011 2245679999999999999999999999999999999999876 45899
Q ss_pred EEECCccCCcccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000838 764 IKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 764 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 843 (1262)
|.++|. +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 345677776777899999998754332 123344455577888989998777665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i 213 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKI 213 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEE
Confidence 79999999999999999999999999999999999999999999999777999999999964 455667775
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=249.39 Aligned_cols=179 Identities=26% Similarity=0.318 Sum_probs=155.3
Q ss_pred ceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCccCCc-ccccceEEEecCCCCCCCCCC
Q 000838 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVT 794 (1262)
Q Consensus 717 ~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lT 794 (1262)
+..+|.++|++|.+||++-||||||||||||+..+.|...+. ..+|++++|++.++. ..-+|.+|..+||+.++|.++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 457999999999999999999999999999999999965542 578999999988754 245688999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCC
Q 000838 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 874 (1262)
Q Consensus 795 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 874 (1262)
|.+|+.|+. +.....+.+++.+...++..||....++. +..||||||-||++-|+|+..|+.++||||+|.
T Consensus 94 Vg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~ 164 (213)
T COG4136 94 VGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSR 164 (213)
T ss_pred cccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence 999999863 34445567777889999999999887764 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hCCCEEEEEecCC
Q 000838 875 LDARAAAIVMRTVRNTV-DTGRTVVCTIHQP 904 (1262)
Q Consensus 875 LD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~ 904 (1262)
||..-+.+..+.+-... ..|..+|.+|||.
T Consensus 165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999988888775544 4599999999985
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=293.30 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=152.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCC--ceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHHHHh
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSL--KVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~ 73 (1262)
+++|+||||||||||+++|+|+++|+. ..+|+|.++|.++... ..++.++|++|++.+++. |++||+.++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~ 110 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPR 110 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHH
Confidence 479999999999999999999998741 1259999999887431 224679999999888874 99999998654
Q ss_pred ccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCcccccccccCCcccccccccchhh
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 153 (1262)
.++... .++.++.+++.++.++|.+..... -++.+..||||||||+
T Consensus 111 ~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 111 MLGTTA---------------------------------QSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRL 156 (251)
T ss_pred hcCCCh---------------------------------hhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHH
Confidence 321100 000112345566777764321111 1245678999999999
Q ss_pred HHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCcchH
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 siA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~~~~ 233 (1262)
+|||||+.+|++++|||||+|||+.++..+.+.|+++ + + +.+|++++|+.+++.+.||++++|++|++++.|+++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-K-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-h-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999886 2 3 35677789999999999999999999999999998876
Q ss_pred H
Q 000838 234 L 234 (1262)
Q Consensus 234 ~ 234 (1262)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 3
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=331.70 Aligned_cols=185 Identities=21% Similarity=0.278 Sum_probs=150.7
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCCCCCceeEEEEECCccCCCCc---ccceEEeeccccCCCCCCCHHHHHHHHHhccCC
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~ 77 (1262)
.++|+|+||||||||+++|+|+++|+ +|+|.+||.++.+.. .++.++||+|++.+|+ .|++|||.++...
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~~--- 441 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDI--- 441 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCCC---
Confidence 37999999999999999999999998 999999999987553 3578999999998876 4999999985310
Q ss_pred CcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhC-------CcccccccccCCcccccccccc
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLG-------LDNCADILVGDEMIRGISGGQK 150 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqk 150 (1262)
..+ +++++++..| |++..||.+|+ ....||||||
T Consensus 442 --~d~------------------------------------~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqr 482 (592)
T PRK10790 442 --SEE------------------------------------QVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQK 482 (592)
T ss_pred --CHH------------------------------------HHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHH
Confidence 000 1122233333 56678999986 4567999999
Q ss_pred hhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEEecCc
Q 000838 151 KRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 151 qRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~~G~~ 230 (1262)
||++|||||+.+|+|++||||||+||+.++..+.+.|++.. .++| +++++|+. +....||+|++|++|++++.|++
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~t-vIivtHr~-~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTT-LVVIAHRL-STIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCE-EEEEecch-HHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999998753 3345 44566765 45667999999999999999999
Q ss_pred chHHH
Q 000838 231 ELVLE 235 (1262)
Q Consensus 231 ~~~~~ 235 (1262)
+++.+
T Consensus 559 ~~L~~ 563 (592)
T PRK10790 559 QQLLA 563 (592)
T ss_pred HHHHh
Confidence 98864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=297.64 Aligned_cols=189 Identities=20% Similarity=0.378 Sum_probs=150.9
Q ss_pred CEEEeCCCCCCHHHHHHHHhCCCC-----CCCceeEEEEECCccCCCC-----cccceEEeeccccCCCCCCCHHHHHHH
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD-----SSLKVSGRVTYNGHNMGEF-----VPQRTAAYISQHDNHIGEMTVRETLAF 70 (1262)
Q Consensus 1 ~~~i~G~sGsGKSTLL~~l~g~~~-----~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTv~e~l~f 70 (1262)
+++|+||||||||||+++|+|+.+ |+ +|+|.++|.++... ..++.++|++|++.+++. ||.||+.+
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~ 142 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY 142 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHh
Confidence 479999999999999999999854 35 99999999886431 124579999999888774 99999998
Q ss_pred HHhccCCCcchhhhHHHHHHHHhcCCCCCCchhHHHHHhhhcccchhhhHHHHHHHhCCc----ccccccccCCcccccc
Q 000838 71 SARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLD----NCADILVGDEMIRGIS 146 (1262)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~~LS 146 (1262)
+...++... ....++.+.++++.+|+. +..+ +.+..||
T Consensus 143 ~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~LS 184 (286)
T PRK14275 143 GPRLHGIND---------------------------------KKQLEEIVEKSLRKAALWDEVSDRLD-----KNALGLS 184 (286)
T ss_pred HHHhcCCCc---------------------------------HHHHHHHHHHHHHHhCCccchhhHhh-----CChhhCC
Confidence 654321100 000122345667777774 2233 4567899
Q ss_pred cccchhhHHHHHHhcCCeEEEEeCCCccccHHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHHhccceEEecCCeEEE
Q 000838 147 GGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVY 226 (1262)
Q Consensus 147 GGqkqRvsiA~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~i~vl~~G~i~~ 226 (1262)
|||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|++++|+.+++.++||++++|++|+++.
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~--~~-~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR--GS-YTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999864 23 567779999999999999999999999999
Q ss_pred ecCcchHH
Q 000838 227 QGPRELVL 234 (1262)
Q Consensus 227 ~G~~~~~~ 234 (1262)
.|+++++.
T Consensus 262 ~g~~~~~~ 269 (286)
T PRK14275 262 HAPTAQLF 269 (286)
T ss_pred eCCHHHHH
Confidence 99987763
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=293.55 Aligned_cols=195 Identities=27% Similarity=0.389 Sum_probs=149.3
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.+. +.+.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 4677776652 12358999999999999999999999999999999999876 458999999976532
Q ss_pred ---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCC
Q 000838 774 ---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL-------VGLPGVN 843 (1262)
Q Consensus 774 ---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~~~ 843 (1262)
..+++.++|++|++.+++ .|+.||+.+... ...... +.+.++..++.+..+.. .. ..+.
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567999999988775 699999987421 111111 23334444443222111 11 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhhc
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEAI 916 (1262)
Q Consensus 844 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~~ 916 (1262)
.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.+ |+|||+++|++.. + +..|+.+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~ 206 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKII 206 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEE
Confidence 7999999999999999999999999999999999999999999999876 9999999999863 3 4477643
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=280.82 Aligned_cols=170 Identities=25% Similarity=0.290 Sum_probs=140.0
Q ss_pred EEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc
Q 000838 694 IFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH 773 (1262)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 773 (1262)
.++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 4677776653 246999999999999999999999999999999999974212468999999987643
Q ss_pred c---c-ccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000838 774 E---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQ 849 (1262)
Q Consensus 774 ~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 849 (1262)
. . .++.++|++|++.+++..|+++++. .. ...|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHH
Confidence 1 2 2345999999988888888877650 00 13699999
Q ss_pred HHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-Hhhhhc
Q 000838 850 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-SFDEAI 916 (1262)
Q Consensus 850 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~fd~~~ 916 (1262)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|+..
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~ 176 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVH 176 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999877899999999975 3444 577753
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=295.24 Aligned_cols=213 Identities=29% Similarity=0.402 Sum_probs=174.2
Q ss_pred ccCCCCCCCCCcEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCe
Q 000838 680 KKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 759 (1262)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~ 759 (1262)
....+.+|.+...+.++++++..+. .++.+|+|+||.+++||.+||+||||||||||.++|.|... +
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~PPg-----------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p 388 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAPPG-----------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--P 388 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecCCC-----------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--c
Confidence 3445677888889999999884321 34689999999999999999999999999999999999876 4
Q ss_pred eEEEEEECCccCC---cccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHH-----HHHHHHHHHcCCcc
Q 000838 760 ITGSIKISGYPKK---HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRK-----MFIEEIMELVELNP 831 (1262)
Q Consensus 760 ~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~ 831 (1262)
.+|.|.+||.+.+ .+.+-+.+||.||+-.+++ -||.||+. + ...+.+.+..- ..+.+++ +.+.+
T Consensus 389 ~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---R--f~~~~d~~kIieAA~lAgvHelI--l~lP~ 460 (580)
T COG4618 389 TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---R--FGEEADPEKVIEAARLAGVHELI--LRLPQ 460 (580)
T ss_pred CCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---h--ccccCCHHHHHHHHHHcChHHHH--HhCcC
Confidence 6899999998864 3456789999999999987 59999995 2 22233332211 1122222 45666
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH
Q 000838 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES 911 (1262)
Q Consensus 832 ~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 911 (1262)
-.|+.+|.. ...||||||||+++||||-.+|.+++||||-|+||......+.+.|.+.+++|.|+|+++|.|+ +...
T Consensus 461 GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~ 537 (580)
T COG4618 461 GYDTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALAS 537 (580)
T ss_pred CccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhh
Confidence 778888864 5689999999999999999999999999999999999999999999999999999999999986 8888
Q ss_pred hhhhc
Q 000838 912 FDEAI 916 (1262)
Q Consensus 912 fd~~~ 916 (1262)
.|+..
T Consensus 538 ~Dkil 542 (580)
T COG4618 538 VDKIL 542 (580)
T ss_pred cceee
Confidence 99854
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=327.27 Aligned_cols=198 Identities=30% Similarity=0.448 Sum_probs=163.8
Q ss_pred cEEEEeeeEEEEecchhhhhccccCCceEEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++++++. .++.+|+|+|++++|||.++|+||||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 36899999999852 12358999999999999999999999999999999999877 458999999988
Q ss_pred CCc---ccccceEEEecCCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 840 (1262)
... ..+++.++||+|++.+++ .|++||+.++. ++.++ +.++++++..++.+. .|+.+|.
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e- 454 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASD----AEIRRALERAGLDEFVAALPQGLDTLIGE- 454 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-
Confidence 643 456788999999999886 69999998742 12222 236677787777653 3555554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHhhhh
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 841 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~fd~~ 915 (1262)
....||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|++
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i 526 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRI 526 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEE
Confidence 345799999999999999999999999999999999999999999999875 5899999999974 45677764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1262 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-08 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 7e-07 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1262 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-11 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-11 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-06 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-06 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-20 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-05 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-07 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-06 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-06 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-08 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-08 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 8e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-09 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 5e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 6e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-06 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFA- 777
L G+S G + L+G +GAGKTT + +++ + + G + + G E
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 778 -RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
++ Y + + E L F A + + E +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 897 VVCTIH 902
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 52/245 (21%), Positives = 84/245 (34%), Gaps = 73/245 (29%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE----------FVPQRTAAYIS 53
L+GP +GKTT L ++ + S SG VT G N+ E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEG 113
M E L F A
Sbjct: 101 ------RNMQGIEYLRFVAGFYAS----------------------------------SS 120
Query: 114 QEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEIS 172
E + + ++ GL + + S G +++ ++ P L +DE +
Sbjct: 121 SEIEEMVERATEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRL-AILDEPT 174
Query: 173 TGLDSSTTFQIVNCLRQNIHINSE--TAVIS--LLQPAPETYNLFDDIILLSDGQIVYQG 228
+GLD ++ L+Q + E T ++S + E L D I L+ +G IV G
Sbjct: 175 SGLDVLNAREVRKILKQ---ASQEGLTILVSSHNM---LEVEFLCDRIALIHNGTIVETG 228
Query: 229 -PREL 232
EL
Sbjct: 229 TVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 7e-23
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GSIKISGYPKKHETFA 777
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
+I + + I ++V + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 896
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 897 VVCTIH 902
++ +
Sbjct: 187 IISSRE 192
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 66/232 (28%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE------FVPQRTAAYISQHDN 57
GP GKTT L ++ L G + YNG + + F+P+
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+++V + L A GV + +M+
Sbjct: 91 --RKISVEDYLKAVASLYGVKVNKNEIMDA------------------------------ 118
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVG-PALAMFMDEISTGLD 176
L+ + + + + +S G +RV ++ + +D+ +D
Sbjct: 119 ------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEI-YVLDDPVVAID 165
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG 228
+ +++ + + I E ++ + + E + D L
Sbjct: 166 EDSKHKVLKSILE---ILKEKGIVIIS--SREELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 28/194 (14%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETF 776
L +SG R G + L+G +GAGK+TL+ +AG +G GSI+ +G P +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKL 71
Query: 777 ARISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
A Y Q PF V L + +E + ++ + L+
Sbjct: 72 ALHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGR 122
Query: 836 LVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 123 ST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 889 NTVDTGRTVVCTIH 902
G +V + H
Sbjct: 178 ALSQQGLAIVMSSH 191
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 45/251 (17%), Positives = 72/251 (28%), Gaps = 74/251 (29%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA---AYISQHDN 57
+ L+GP +GK+T L +AG G + + G + + + A AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
V L ++
Sbjct: 84 PPFATPVWHYLTL------------------------HQHDKTRTELLNDV--------- 110
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV--------TTGEMMVGPALAMFMD 169
L LD+ +SGG+ +RV T + L + +D
Sbjct: 111 ------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQL-LLLD 158
Query: 170 EISTGLDSSTTFQIVNCLRQNIHINSETAVISL--LQPAPETYNL----FDDIILLSDGQ 223
E LD + + L + V+S L N LL G+
Sbjct: 159 EPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHDL-------NHTLRHAHRAWLLKGGK 210
Query: 224 IVYQGPRELVL 234
++ G RE VL
Sbjct: 211 MLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-21
Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 684 MVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLV------LLNGVSGAFRPGVLTALM 737
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 738 GVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTV 795
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTI 855
+ F ++++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 856 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 898
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-14
Identities = 35/183 (19%), Positives = 73/183 (39%), Gaps = 21/183 (11%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIK---ISGYPKKHETFARISGYC 783
RPG + L+G +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 784 EQND---IHSPFV-----TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
E + I +V + + L ++ E ++ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 895
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 896 TVV 898
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 59/204 (28%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGE 61
L+G GK+T L LAGK N+G F
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQK-------------PNLGRF---------------DDP 137
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATE--------- 112
+E + + + + ++ + A IKP +D +A+
Sbjct: 138 PEWQEIIKYFRGSE----LQNYFTKMLEDDIKAIIKP-QYVDNIPRAIKGPVQKVGELLK 192
Query: 113 --GQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM---- 166
+++ Y+K+L L+N V I +SGG+ +R +G +
Sbjct: 193 LRMEKSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRF-----AIGMSCVQEADV 242
Query: 167 -FMDEISTGLDSSTTFQIVNCLRQ 189
DE S+ LD +R
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRS 266
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 66/191 (34%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
++G +GKTT + LAG L G+ +P+ + Q T
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPDE-------------GQDIPKLNVSMKPQKIAPKFPGT 429
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
VR+ R + +
Sbjct: 430 VRQLFFKKIR--------GQFLNPQFQTDV------------------------------ 451
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEISTGLDSS 178
+K L +D+ D V +SGG+ +RV + AL + +DE S LDS
Sbjct: 452 VKPLRIDDIIDQEVQH-----LSGGELQRVA-----IVLALGIPADIYLIDEPSAYLDSE 501
Query: 179 TTFQIVNCLRQ 189
+R+
Sbjct: 502 QRIICSKVIRR 512
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 33/195 (16%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETF 776
L ++ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 777 ARISGYCEQNDIHSPF-VTVHES-----LAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
+ G+ Q SPF +V + D + + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 889
L + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 890 TVDTGRTVVCTIHQP 904
TVV T HQP
Sbjct: 175 AQSQNMTVVFTTHQP 189
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 35/240 (14%), Positives = 76/240 (31%), Gaps = 63/240 (26%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ +LG GK+T L L G G++ ++ ++ Q +
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+V + + LM G ++ A +
Sbjct: 80 AYSVLDIV---------------LM---------GRST------HINTFAKPKSHDYQVA 109
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-----MFMDEISTGL 175
L L L + A +SGGQ++ + ++ A+A + +DE ++ L
Sbjct: 110 MQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIASECKLILLDEPTSAL 159
Query: 176 DSSTTFQIVNCLRQNIHINSETAVISL--LQPAPETYNLFDDIILLSDGQIVYQGPRELV 233
D + +++ L + T V + + + +LL+ + R ++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNFKFGETRNIL 216
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-19
Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 32/227 (14%)
Query: 678 QPKKRGMVLPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDK---LVLLNGVSGAFRPGVLT 734
Q + + F P+ + F +++ VD+ +E ++ K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 735 ALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPF 792
++G +G GKTT + +LAG T G + + ++ Y + I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQ-----YIK--------AEYE 431
Query: 793 VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR 852
TV+E L+ + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQR 479
Query: 853 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 898
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSIKISGYPKKHE 774
+ + G++ ++G +G GKTT + +LAG+ + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 775 T--FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
F R+ + + +V + L +VD + EE+++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 893 TGRTVV 898
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 68/242 (28%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
++GP GKTTF+ LAG + + G+V ++ T AY Q+ E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL----------TVAYKPQYIKAEYEGT 433
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V E L+ +L +
Sbjct: 434 VYELLSKIDS-----------SKLNSNFYKTEL--------------------------- 455
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQI 183
LK LG+ + D V D +SGG+ +RV ++ A +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VNCLRQNIHINSETA-VIS----LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFE 238
+R + N +TA V+ ++ + D +I+ +G+ G + E
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLIVF-EGEPGRHGRALPPMGMRE 563
Query: 239 SM 240
M
Sbjct: 564 GM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 62/200 (31%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEM 62
++GP +GKTT + LAG+L N+ E DN I
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLI-------------PNLCEDNDSW--------DNVIRAF 159
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKP-DPDIDVYMKAVATEGQEANVIT- 120
E + + +D+ KA +G+ ++
Sbjct: 160 RGNELQNY---------------FERLKNGEIRPVVKPQYVDLLPKA--VKGKVRELLKK 202
Query: 121 -------DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FM 168
+ +K L L+N V D + +SGG+ +RV + AL F
Sbjct: 203 VDEVGKFEEVVKELELEN-----VLDRELHQLSGGELQRV-----AIAAALLRKAHFYFF 252
Query: 169 DEISTGLDSSTTFQIVNCLR 188
DE S+ LD ++ +R
Sbjct: 253 DEPSSYLDIRQRLKVARVIR 272
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L G + G + ++G +G GKTT + +LAG T G I + ++ Y +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQ-----Y 355
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I TV+E L+ + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 897
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 898 V 898
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGSIKISGYPKK--HETFARISGY 782
+ G++ ++G +G GK+T + +LAG+ G + I + F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 783 CEQNDIH----SPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
+I +V + + L + D + +EE+++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREIQ 157
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 158 H-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 52/270 (19%), Positives = 93/270 (34%), Gaps = 80/270 (29%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
++GP GKTTF+ LAG + + G++ ++ + PQ YI E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ----YIKAD----YEGT 363
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYY 123
V E L+ +L +
Sbjct: 364 VYELLSKIDA-----------SKLNSNFYKTEL--------------------------- 385
Query: 124 LKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQI 183
LK LG+ + D V + +SGG+ +RV ++ A +DE S LD +
Sbjct: 386 LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 184 VNCLRQNIHINSETA-VIS----LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFE 238
+R + N +TA V+ ++ + D +++ +G+ G +
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGKYGRALPPM---- 489
Query: 239 SMGFKCPQRKGVADFLQE--VTSKKDQQQY 266
R+G+ FL +T ++D
Sbjct: 490 ------GMREGMNRFLASIGITFRRDPDTG 513
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGSIKISGYPKKHETF 776
+L +S G L G++GAGKTTL+++L T +G++ + G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 777 ------ARISGYCEQNDIH---SPFVTVHESL--AFSAWLRLAPEVDSETRKMFIEEIME 825
I G+ + V + + + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 886 TVR--NTVDTGRTVVCTIHQPSIDIFESFDEAIPGIEK---IKNG 925
+ + ++ H +E K +K+G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFI--------EEITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 51/255 (20%), Positives = 86/255 (33%), Gaps = 79/255 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGE-------------FVPQRTAA 50
L G +GKTT L L SG V G G+ FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVA 110
+ V + + S + +G Y D + ++ A
Sbjct: 109 KFQEG------ERVIDVVI-SGAFKSIG-VYQ--------------DIDDE----IRNEA 142
Query: 111 TEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 165
+ LK++G+ A + I +S G+K+RV M+ AL
Sbjct: 143 HQ----------LLKLVGMSAKAQ-----QYIGYLSTGEKQRV-----MIARALMGQPQV 182
Query: 166 MFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISL------LQPAPETYNLFDDIILL 219
+ +DE + GLD +++ L ++ +++ ++ F I+LL
Sbjct: 183 LILDEPAAGLDFIARESLLSILDS---LSDSYPTLAMIYVTHFIEEITA---NFSKILLL 236
Query: 220 SDGQIVYQGPRELVL 234
DGQ + QG E +L
Sbjct: 237 KDGQSIQQGAVEDIL 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 8e-18
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFAR 778
L +G + G + ++G +G GKTT +L G T GS+ +
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------Q 330
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
I Y Q + TV + +L A + T F EE+ + + L+ L +S V
Sbjct: 331 ILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
N LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 899 CTI 901
I
Sbjct: 440 FII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGY------ 782
+ + ++G +G GKTT++ +LAG I + K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78
Query: 783 -----CEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
E +H + S + + + +E+ EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
N LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 898 VCTIH 902
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 46/273 (16%), Positives = 83/273 (30%), Gaps = 84/273 (30%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
+LGP GKTTF L G++ + G VT + Y Q
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEKQILS---------YKPQR-------- 338
Query: 64 VRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYM---KAVATEGQEANVIT 120
I P+ D V A ++
Sbjct: 339 --------------------------------IFPNYDGTVQQYLENASKDALSTSSWFF 366
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
+ K L L + V D +SGG+ +++ + A +D+ S+ LD
Sbjct: 367 EEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 181 FQIVNCLRQNIHINSETA-VIS----LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ + +++ +I + + D II+ G+ G +
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHD------YIADRIIVF-KGEPEKAGLATSPVT 474
Query: 236 FFESMGFKCPQRKGVADFLQE--VTSKKDQQQY 266
+ G+ +FL+E VT ++D +
Sbjct: 475 L----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 43/311 (13%), Positives = 92/311 (29%), Gaps = 70/311 (22%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSL-KVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGE 61
+LG GKTT L LAG++ + + +V + + F + Y +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGKEIYNYFKE------L 81
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
+ L + Q + + + + + D
Sbjct: 82 YSN--ELKIVHKIQ----YVEYASKFLKGTVNEIL---------------TKIDERGKKD 120
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEISTGLD 176
++L + N + ++ +SGG +R+ +V +L D+ S+ LD
Sbjct: 121 EVKELLNMTN-----LWNKDANILSGGGLQRL-----LVAASLLREADVYIFDQPSSYLD 170
Query: 177 SSTTFQIVNCLRQNIHINSETAVI------SLLQPAPETYNLFDDIILLSDGQIVY---- 226
+ +R+ + VI +L L D I ++ VY
Sbjct: 171 VRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDLIHIIYGESSVYGRVS 221
Query: 227 ------QGPRELVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQ 280
G + + + K + + L+EV+ + + +
Sbjct: 222 KSYAARVGINNFLKGYLPAENMKIRPDE-IKFMLKEVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 281 EFAEAFKSFHV 291
+F +
Sbjct: 281 DFQLVVDNGEA 291
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 36/192 (18%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GSIKISGYPKKHETFARISGYCEQND 787
G ++G +G+GKTTL+ ++G G I +++ Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNY-------IRYSTNLP 81
Query: 788 IHSPF-VTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVNG 844
VTV++ + L+ + E+++ ++L LR+ +
Sbjct: 82 EAYEIGVTVNDIVYLYEELKGLD-------RDLFLEMLKALKLGEEILRRK------LYK 128
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 904
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 905 SIDIFESFDEAI 916
D
Sbjct: 184 ------ELDMLN 189
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 70/258 (27%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-DNHIGEM 62
+LGP SGKTT L A++G L SG + NG + + Y + + + +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYI--RYSTNLPEAYEIGV 88
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV + + +G+ R+ E
Sbjct: 89 TVNDIVYLYEELKGL-----------DRDLF--------------------LEM------ 111
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDEISTGLDS 177
LK L L + + +S GQ V ALA +DE +D+
Sbjct: 112 -LKALKLGEE----ILRRKLYKLSAGQSVLVR-----TSLALASQPEIVGLDEPFENVDA 161
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG--PREL--- 232
+ I +++ E +++ + G + EL
Sbjct: 162 ARRHVISRYIKE---YGKEGILVTHEL--DMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
Query: 233 -VLEFFESMGFKCPQRKG 249
++E +
Sbjct: 217 SIVEGERNDALLVLDIMD 234
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L VS G + G +G+GK+TL+ ++AG T +G + G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 779 ISGYCEQNDIHSPF-VTVHESLAFSAWLRLAPE---VDSETRKMFIEEIMELVELNP--- 831
G Q F V + +AF A + D + + +++ ME V L+
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAF------AVKNFYPDRDPVPL-VKKAMEFVGLDFDSF 131
Query: 832 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 891
+ P LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 132 KDRV----P--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 892 DTGRTVVCTIHQ 903
G+TV+ H
Sbjct: 186 TLGKTVILISHD 197
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 65/241 (26%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-DNHIGEM 62
+ G SGK+T L +AG ++ + SG V Y+G + +R Q+ ++
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
V + +AF+ + + K A
Sbjct: 95 RVFDEVAFAVKNFYPDR------DPVPLVKKA---------------------------- 120
Query: 123 YLKVLGLDNCADILVGDEMIRG-----ISGGQKKRVTTGEMMVGPALAM-----FMDEIS 172
++ +GLD + + +SGG+K+RV + + +DE
Sbjct: 121 -MEFVGLD--------FDSFKDRVPFFLSGGEKRRVA----IAS-VIVHEPDILILDEPL 166
Query: 173 TGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRE 231
GLD ++ + + +T VI + N D +++L G+ V+ G E
Sbjct: 167 VGLDREGKTDLLRIVEK-WKTLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 232 L 232
Sbjct: 225 F 225
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 42/199 (21%), Positives = 85/199 (42%), Gaps = 35/199 (17%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYP--KKHETF 776
L G++ + G +TA++G +G GK+TL G + + +G I P +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 777 ARIS---GYCEQNDIHSP---FV--TVHESLAFSAWLRLAPE---VDSETRKMFIEEIME 825
++ G Q+ P +V++ ++F + + + ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSF------GAVNMKLPEDEIRKRVDNALK 129
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 885
+ L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 886 TVRN-TVDTGRTVVCTIHQ 903
+ + G T++ H
Sbjct: 185 LLVEMQKELGITIIIATHD 203
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 7e-12
Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 66/269 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH-------- 55
+LG GK+T G L S SGR+ ++ + ++ + +
Sbjct: 39 ILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKGIMKLRESIGIVFQDP 93
Query: 56 DNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
DN + +V + ++F A + E+ +R A
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPED-----EIRKRVDNA--------------------- 127
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAM-----FMDE 170
LK G+++ D + +S GQKKRV + G L M +DE
Sbjct: 128 --------LKRTGIEHLKD-----KPTHCLSFGQKKRVA----IAG-VLVMEPKVLILDE 169
Query: 171 ISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230
+ GLD +I+ L + + +I D++ ++ +G+++ QG
Sbjct: 170 PTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 231 ELVL---EFFESMGFKCPQRKGVADFLQE 256
+ V E + + P+ + + L+E
Sbjct: 229 KEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHE 774
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + I+ E
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-AE 78
Query: 775 --------TFARISGYCEQNDIHSPF--VTV-----------HESLAFSAWLRLAPEVDS 813
TF Q P +TV ES S + + +
Sbjct: 79 LYHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 128
Query: 814 ETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 873
E + +I+E ++L+ L G LS Q K + I L+ NP +I MDEP +
Sbjct: 129 EMVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIA 182
Query: 874 GLDARAAAIVMRTVRNTVDTGRTVV 898
G+ A + V G T +
Sbjct: 183 GVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 41/196 (20%)
Query: 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAY-IS---QHDN 57
TL++GP SGK+T + + G L + GRV + ++ P Y I Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ EMTV E L C G + + ++ M A +
Sbjct: 93 PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK----- 136
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE----MMVGPALAMFMDEIST 173
L+ L L + D G+ +SGGQ K V E +M P + + MDE
Sbjct: 137 -----ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRALMTNPKM-IVMDEPIA 182
Query: 174 GLDSSTTFQIVNCLRQ 189
G+ I N + +
Sbjct: 183 GVAPGLAHDIFNHVLE 198
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGSIKISGYPK 771
E+ + L V+ + G ++MG SG+GK+T+++++ + T G +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 772 KHETFAR---ISGYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
EL + P N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 887 VRN-TVDTGRTVVCTIHQPSI 906
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 19/194 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGSIKISGYPKKHETFA 777
L G+S + + G +++G SG+GK+TL+ +L T G ++ +K +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 778 R---ISGYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R + G+ Q I P +T E++ + K E ++ + L
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDK 133
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892
P LS +++R+ IA L P ++F DEPT LD+ VM +
Sbjct: 134 LSRK---P--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 893 TGRTVVCTIHQPSI 906
G ++V H+ +
Sbjct: 189 GGTSIVMVTHEREL 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 6e-11
Identities = 93/599 (15%), Positives = 179/599 (29%), Gaps = 169/599 (28%)
Query: 47 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVY- 105
T YI Q D + V F+ V +R ++L R+ ++P ++ +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDG 157
Query: 106 MKAVATEGQEANVITDYYLK-VLGLDNCADILVGDEMIRGI---SGGQKKRVTTGEMMVG 161
+ G K + LD C V +M I + T M+
Sbjct: 158 VLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 162 PALAMFMDEISTGLDSSTTFQIVNCLRQNIH-INSETAVISLLQPAPETYNLFDDIILLS 220
L ++ D S+ ++ IH I +E + +P + ++
Sbjct: 204 KLLYQIDPNWTSRSDHSSN------IKLRIHSIQAELRRLLKSKPYENCLLVLLNV---Q 254
Query: 221 DGQIVYQGPRELVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWAHKEIPYRFITVQ 280
+ + + C L +T+ RF V
Sbjct: 255 NAKAW------------NAFNLSCK-------IL--LTT---------------RFKQVT 278
Query: 281 EFAEAFKSFHVGQKLADELRIPFDKSQSHRAALAKKVYGVGKREL-LKACFSREFLLMKR 339
+F A + H+ D + + ++ L K + ++L +
Sbjct: 279 DFLSAATTTHISL---DHHSMTLTPDEV-KSLLLKYL-DCRPQDLPREVL--------TT 325
Query: 340 NSFVYIFKLVQIAITALVTMTLFFRTKMKKDSVADGGVYAGVMFFAIVIVMFNGYAEISM 399
N ++I A + +D +A + V + ++ E S+
Sbjct: 326 NPRR-------LSIIA----------ESIRDGLATWDNWKHVNCDKLTTII-----ESSL 363
Query: 400 TIVKIPVFYKQR--DLQFFPPWAYALPTWILKI-----PISFVEVVVWVFVSYYVIGYDP 452
+++ P Y++ L FPP A+ +PT +L + S V VVV Y ++ P
Sbjct: 364 NVLE-PAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 453 NAGRFF--KQYFLLLAVNQMACALFRFIAATGRNMVVANTFGTVALLVLFALGGFLLSRE 510
Y L + AL R +V + + F +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHR--------SIVDH----YNIPKTFDSDDLIPPYL 469
Query: 511 DIKKWWIWGYWCSPLMY----AQNAIVANEF----LGHSW-----RKFTPDSNEPLGV-- 555
D Y+ S + + ++ F L + R + N +
Sbjct: 470 D-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 556 --QVLKS-RGFFPDAY-WYWLGLGALFGFVL-----LLHIAFT----LALTFLNRGYLY 601
Q LK + + D Y + A+ F+ L+ +T +AL +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-08
Identities = 90/625 (14%), Positives = 173/625 (27%), Gaps = 199/625 (31%)
Query: 585 HIAFTLA-LTFLNRGYLYHLHFNYFKSKF------DKPQAVITEDSERDE---QDTKIRG 634
H+ F + + L F F D P+++++ E D + G
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDA-FVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSG 63
Query: 635 TVELSTLGSSSSLTTRSESG-----GDIWGRNSSSQSLSMTEAAGGVIQPKKRGMVLPFE 689
T+ L L ++ E ++ N M+ QP + E
Sbjct: 64 TLRLFWT-----LLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMM-TRMYIE 114
Query: 690 PHSLIFDEVT----YSVDMPQEM-KLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 744
++++ Y+V Q KL+ L +L RP + GV G+GK
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-EL----------RPAKNVLIDGVLGSGK 163
Query: 745 TTL-MDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSA 803
T + +DV K I
Sbjct: 164 TWVALDVCLSYKV----------------QCKMD--------FKIF-------------- 185
Query: 804 WLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 863
WL L +S E ++E+ L L + + +L I + A
Sbjct: 186 WLNLK-NCNSP------ETVLEM--LQKL-LYQIDPNWTSRSDHSSNIKLRI-HSIQAEL 234
Query: 864 SIIFMDEP-TSGLDARAAAIVMRTVRN-----TVDTG-RTVVCTIHQPSIDIFESFDEAI 916
+ +P + L +V+ V+N + + ++ T + D +
Sbjct: 235 RRLLKSKPYENCL------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 917 PGIEKIKNGYNPATWMLEVTAASQEVALGVDFTDIFKRSELYRGNK---ALIEDLSKPTP 973
++ P + + L D+ E+ N ++I + +
Sbjct: 289 ISLDHHSMTLTPDE-VKSLLLK----YLDCRPQDL--PREVLTTNPRRLSIIAESIRD-- 339
Query: 974 GSKDLYFPTQYSQSAFTQFIACLWKQHWSYWRNPPY----TAVRFFFTTLISLMFGTLFW 1029
W W++ T + L + +F
Sbjct: 340 -----------------------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1030 DLGTKTGKNQDLFNAMGSMYI--AVLFIGVQYCFSVQPIVSVERTI---FYRESAAGMYS 1084
L +F S +I +L + I S + ++ S
Sbjct: 377 RLS--------VFPP--SAHIPTILLSL-----IWFDVIKSDVMVVVNKLHKYSLV---E 418
Query: 1085 GQPWALAQAAIEIPYIFI--------QSSLYGVLV--YAMI-GFDWTAAK-------FFW 1126
QP ++ I IP I++ + +L+ +V Y + FD F+
Sbjct: 419 KQP---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 1127 YI-----------FFMFFTLLYFTF 1140
+I F +++ F
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDF 500
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-06
Identities = 54/376 (14%), Positives = 110/376 (29%), Gaps = 113/376 (30%)
Query: 33 VTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREK 92
+T + +F+ T +IS + + +T E + + + R L +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PRE 321
Query: 93 AAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLG------LDNCADILVGDEMIRGIS 146
P + +A ++ D + V +++ ++L E
Sbjct: 322 VLTTNP-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY----- 371
Query: 147 GGQKKRVTTGEMMVGPALAMFMDE--ISTGL--------DSSTTFQIVNCLRQNIHINSE 196
+K L++F I T L S +VN L +
Sbjct: 372 ---RKMFD--------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414
Query: 197 TAVISLL--QPAPETYNLFDDIILLSDGQIVYQGPREL---VLEFFESMGFKCPQRKGVA 251
SL+ QP T ++ I L ++ + L +++ + +
Sbjct: 415 ----SLVEKQPKESTISI-PSIYLELKVKLENE--YALHRSIVDHYN------IPKT--- 458
Query: 252 DFLQEVTSKKDQQQYWAHKEIPYRFITVQ------EFAEAFKSFH-VGQKLADELRIPFD 304
F + QY+ I + ++ F F F + QK+ + ++
Sbjct: 459 -FDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWN 515
Query: 305 KSQSHRAALAK-KVYGVGKRELLKAC--FSR------EFL-------------------L 336
S S L + K Y K + + R +FL L
Sbjct: 516 ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 337 MKRNSFVYIFKLVQIA 352
M + ++ Q+
Sbjct: 573 MAEDEAIFEEAHKQVQ 588
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 52/212 (24%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKIS 767
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 768 GYPKKHETFA---RISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIE 821
G+ R G Q+ + ++ ++++ + P + E +
Sbjct: 70 GHDLALADPNWLRRQVGVVLQD----NVLLNRSIIDNISLAN-----PGMSVEK----VI 116
Query: 822 E----------IMELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 870
I EL ++VG G LS QR+R+ IA LV NP I+ DE
Sbjct: 117 YAAKLAGAHDFISEL----REGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDE 171
Query: 871 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
TS LD + ++MR + GRTV+ H
Sbjct: 172 ATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARI 779
LLN + + G +G GK+TLM +A + G+ ++ R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP---------TQEE---CRT 497
Query: 780 SGYCEQN-DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVG 838
Y E + D +V + + E T++ I++ + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 839 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 735 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFARISGYCEQNDIHSP 791
L+G +GAGK+ ++++AG + G + I+ P R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP----PERRGIGFVPQDYALFP 83
Query: 792 FVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851
++V+ ++A+ LR V+ + R + E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 852 RLTIAVELVANPSIIFMDEPTSGLDAR 878
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 27/193 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGSIKISGYPKKHETFA-- 777
L ++ G AL+G +G+GK+T+ +L R Y G IKI G
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 778 -RISGYCEQ-----NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELN 830
I G Q N+ T+ ++ + EV T+ + + I L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---- 141
Query: 831 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
P + ++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V +
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 890 TVDTGRTVVCTIH 902
+ RT++ H
Sbjct: 201 -LRKNRTLIIIAH 212
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 50/234 (21%)
Query: 686 LPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 745
L F+ + F+ V +S + + L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA-----------DGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94
Query: 746 TLM-------DVLAGRKTGGYITGSIKISGYPKKHETFA---RISGYCEQ-----NDIHS 790
T++ D+ +G I+I G T A G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 791 PFVTVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELNPLR-QSLVGLPGVNGLSTE 848
T+ +++ + EV++ + I + IM P ++ VG G+ LS
Sbjct: 143 ---TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF----PEGYRTQVGERGLK-LSGG 194
Query: 849 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902
+++R+ IA ++ P II +DE TS LD + ++ V RT + H
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-09
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGSIKISGYPKKHETF-- 776
L G++ + G AL+G SG GK+T + ++ Y + G + I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 777 --ARISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEE-IMELVELN 830
I G Q P + T+ E++ + E++ ++ + IM+L
Sbjct: 462 LREII-GVVSQE----PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---- 512
Query: 831 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 889
P + +LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 513 PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 890 TVDTGRTVVCTIHQPS 905
GRT + H+ S
Sbjct: 572 -AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
L G+S + G AL+G SG GK+T++ D +AG S+ + G K
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG---------SVFLDGKEIKQ 1099
Query: 774 ETFARISGYCEQNDIHS--PFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVE 828
+ Q I S P + ++ E++A+ R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 829 LNPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 882 IVMRTVRNTVDTGRTVVCTIH 902
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 37/195 (18%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
L +S +P + A G SG GK+T+ AG I I G P +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 774 ETFA----RISGYCEQNDIHSPFV---TVHESLAFSAWLRLAP-EVDSETRKMFIEE-IM 824
+ +I G+ Q+ + T+ E+L + ++ F +
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 825 ELVE-LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 883
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 884 MRTVRNTVDTGRTVV 898
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 15/161 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G +++ P
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP----PQK 86
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
R G QN +TV+++++F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGSIKIS 767
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 768 GYPKKHET---FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIM 824
P+ + F Q P +T E++AF + + R +EE+
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 825 ELVELNPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
LN +S + PG + ++G SG GKTTL+ LAG + G I +SG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG----EISLSG--------KT 67
Query: 779 ISGYC-----EQNDIHS--------PFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
I + + P +TV+ ++A+ L ++ R+ IE ++E
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-IEAMLE 124
Query: 826 LVELNPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
L ++ L + LS Q++R +A L +P +I +DEP S LD +
Sbjct: 125 LTGISELAGRYPHE----------LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 51/207 (24%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKK- 772
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 773 --HETFARISGYCEQNDIHSP--F-VTVHESLAFSAWLRLAPEVDSETRKMFIEE----- 822
H Q P F + E++A+ + I
Sbjct: 86 YDHHYLHTQVAAVGQE----PLLFGRSFRENIAYGL-----TRTPTMEE---ITAVAMES 133
Query: 823 -----IMELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
I P + VG G LS QR+ + +A L+ P ++ +D TS LD
Sbjct: 134 GAHDFISGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 877 ARAAAIVMRTV-RNTVDTGRTVVCTIH 902
A V R + + RTV+
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 53/212 (25%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHE 774
+L +S + PG L+G +G+GK+TL+ G I+I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 775 TFARISGYCEQNDIHSPFVTVH-----------ESLAFSAWLR--LAP---EVDSETRKM 818
S +T+ + FS R L P D E
Sbjct: 83 ------------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---- 124
Query: 819 FIEEIMELVELNPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871
I ++ + V L + + + G LS ++ + +A +++ I+ +DEP
Sbjct: 125 -IWKVADEVGLRSVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 872 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903
++ LD I+ RT++ TV+ +
Sbjct: 183 SAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 56/206 (27%)
Query: 710 LQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GSIKIS 767
L ++ + +L GV+ G + ALMG +GAGK+TL +LAG Y + G I +
Sbjct: 9 LWASIDGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLD 65
Query: 768 G---------------------YPKKHETFARISGYCEQNDIHSPFVTVHESL--AFSAW 804
G YP + G VT+ L A A
Sbjct: 66 GENILELSPDERARKGLFLAFQYP------VEVPG-----------VTIANFLRLALQA- 107
Query: 805 LRLAPEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVA 861
+L EV +++ +EL++ + L + +N G S ++KR I LV
Sbjct: 108 -KLGREVGVAEFWTKVKKALELLDWDESYLSRY------LNEGFSGGEKKRNEILQLLVL 160
Query: 862 NPSIIFMDEPTSGLDARAAAIVMRTV 887
P+ +DE SGLD A +V R V
Sbjct: 161 EPTYAVLDETDSGLDIDALKVVARGV 186
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 58/273 (21%), Positives = 97/273 (35%), Gaps = 101/273 (36%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMT 63
L+GP +GK+T LAG + ++ G + +G N I E++
Sbjct: 34 LMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGEN-------------------ILELS 73
Query: 64 VRET------LAFSARCQ------GVGTRYDMLMEL-ARREKAAGIKPDPDIDVYMKAVA 110
E LAF Q GV + + L A+ + + + + V
Sbjct: 74 PDERARKGLFLAF----QYPVEVPGVTIANFLRLALQAKLGR------EVGVAEFWTKVK 123
Query: 111 TEGQEANVITDYYLKVLGLDNCADILVGDEMIR-----GISGGQKKRVTTGEM-MVGPAL 164
L++L D + + G SGG+KKR ++ ++ P
Sbjct: 124 KA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY 164
Query: 165 AMFMDEISTGLDSSTTFQI---------VNCLRQNIHINSETAVI------SLLQPAPET 209
A+ +DE +GLD I VN +R + +L
Sbjct: 165 AV-LDETDSGLD------IDALKVVARGVNAMR-----GPNFGALVITHYQRILN----- 207
Query: 210 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
Y D + ++ DG++V G EL LE E+ G+
Sbjct: 208 YIQPDKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
LN VS G + ++G SGAGK+TL+ + R T G + +++ + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 778 RIS-GYCEQ--NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
R G Q N + S TV ++A L L + K + E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 876
S P + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 159 SY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 86/262 (32%)
Query: 30 SGRVTYNGHNMGEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGTRYDM 83
G V +G + I QH N + TV +A
Sbjct: 82 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--- 138
Query: 84 LMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIR 143
+ + + L ++GL + D
Sbjct: 139 ----EVKRRVTEL---------------------------LSLVGLGDKHD-----SYPS 162
Query: 144 GISGGQKKRVTTGEMMVGPALA-----MFMDEISTGLDSSTTFQIVNCLRQNIHINSET- 197
+SGGQK+RV + ALA + D+ ++ LD +TT I+ L+ IN
Sbjct: 163 NLSGGQKQRVA-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLG 214
Query: 198 ----------AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPQR 247
V+ + D + ++S+G+++ Q V E F P+
Sbjct: 215 LTILLITHEMDVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKT 257
Query: 248 KGVADFLQEVTSKKDQQQYWAH 269
F+Q + Y
Sbjct: 258 PLAQKFIQSTLHLDIPEDYQER 279
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 52/183 (28%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKISGYPKKH 773
L ++ G AL+G SG+GK+T+ D+ G I + G+ +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 774 ETFA---RISGYCEQ-----NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEI-- 823
T A Q ND TV ++A++ + +R E+I
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYA-------RTEEYSR----EQIEE 452
Query: 824 -------MELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 875
M+ + +++G GV LS QR+R+ IA L+ + I+ +DE TS L
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 876 DAR 878
D
Sbjct: 512 DTE 514
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L+ +S G ++G +GAGKT ++++AG G I ++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL----- 832
+ QN P + V ++L F +R+ ++ R + + +++ L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRNP 125
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 126 LT----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 47/186 (25%)
Query: 715 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGSIKIS 767
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 768 GYPKKHETFA---RISGYCEQ-----NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF 819
G+ + R Q ND T+ ++A++A E E
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ---- 449
Query: 820 IEE------IMELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 872
IE+ ME +E P +++G G + LS QR+R+ IA L+ + ++ +DE T
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 873 SGLDAR 878
S LD
Sbjct: 509 SALDTE 514
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKK 772
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA- 75
Query: 773 HETFARISGYCEQNDIHSP-----F--VTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
H G P F +TV+E+L A+ R D E K +E I
Sbjct: 76 HVINRM--GIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 826 LV-ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 884
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 885 RTVRNTVDTGRTV 897
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 845 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 898
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 899 CTIHQPSIDIFESFDEAI 916
H ++ ++ D I
Sbjct: 309 LVSHDE--ELKDAADHVI 324
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 68/210 (32%)
Query: 710 LQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GSIKIS 767
L +EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G+++
Sbjct: 26 LHVSVEDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFK 82
Query: 768 G---------------------YPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLR 806
G YP I G V+ F L+
Sbjct: 83 GKDLLALSPEDRAGEGIFMAFQYP------VEIPG-----------VSNQF---F---LQ 119
Query: 807 LA----------PEVDSETRKMFIEEIMELVELNP--LRQSLVGLPGVN-GLSTEQRKRL 853
A +D + +EE + L+++ L +S VN G S ++KR
Sbjct: 120 TALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRN 173
Query: 854 TIAVELVANPSIIFMDEPTSGLDARAAAIV 883
I V P + +DE SGLD A +V
Sbjct: 174 DILQMAVLEPELCILDESDSGLDIDALKVV 203
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 92/264 (34%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKV-SGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGE 61
++GP SGK+T LAG+ +V G V + G ++ P R I
Sbjct: 51 IMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPEDRAGEGI--------- 99
Query: 62 MTVRETLAFSARCQ------GVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQE 115
+AF Q GV ++ + L G + D +E
Sbjct: 100 -----FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLM-----EE 145
Query: 116 ANVITDYYLKVLGLDNCADILVGDEMIR-----GISGGQKKRVTTGE----MMVGPALAM 166
+ +L + ++++ G SGG+KKR + ++ P L +
Sbjct: 146 K-------IALLKMP--------EDLLTRSVNVGFSGGEKKR---NDILQMAVLEPELCI 187
Query: 167 FMDEISTGLDSSTTFQI---------VNCLRQNIHINSETAVI------SLLQPAPETYN 211
+DE +GLD I VN LR + + + I +L Y
Sbjct: 188 -LDESDSGLD------IDALKVVADGVNSLR-----DGKRSFIIVTHYQRILD-----YI 230
Query: 212 LFDDIILLSDGQIVYQGPRELVLE 235
D + +L G+IV G LV +
Sbjct: 231 KPDYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGY----- 769
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 770 -PKKHET---FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
PK F QN P +TV++++AF LR AP + + + + E+ +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 826 LVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 883
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 884 MRT 886
+R
Sbjct: 172 VRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGY----- 769
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 770 -PKKHET---FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIME 825
PK E F QN P +TV E++AF R + + E R + EI
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 826 LVELNPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 878
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 879 AAAIVMRT 886
MR
Sbjct: 170 MI---MRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGY------PKKHE---TFARISGYCEQ 785
L+G SG GKTT + ++AG + T G I PK F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 786 NDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845
+ P +TV+E++AF ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 886
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 42/195 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLR---LAPEVDSETRKMFIEEIMELVELNP-LR- 833
IS +C Q + ++ ++ + D +++ +L +
Sbjct: 101 IS-FCSQ----NSWI-------MPGTIKENIIGVSYDEY----RYRSVIKACQLEEDISK 144
Query: 834 -----QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 889 NTVDTGRTVVCTIHQ 903
+ +T + +
Sbjct: 204 CKLMANKTRILVTSK 218
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 55/280 (19%), Positives = 94/280 (33%), Gaps = 100/280 (35%)
Query: 6 GPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVR 65
G GK++ L AL ++D KV G V G + AY+ Q I ++R
Sbjct: 38 GQVGCGKSSLLSALLAEMD---KVEGHVAIKG----------SVAYVPQQ-AWIQNDSLR 83
Query: 66 ETLAFSARCQGVGTRYDMLMELARREKAAGIKP---DPDIDVYMKAVATEGQEANVITDY 122
E + F G + + I+ PD+++ TE
Sbjct: 84 ENILF-------GCQLEE----PYYRSV--IQACALLPDLEILPSGDRTE---------- 120
Query: 123 YLKVLGLDNCADILVGDEMIRGI--SGGQKKRVTTGEMMVGPALA---------MFMDEI 171
+G+ +G+ SGGQK+RV +LA D+
Sbjct: 121 --------------IGE---KGVNLSGGQKQRV---------SLARAVYSNADIYLFDDP 154
Query: 172 STGLDSSTTFQIV-NCLRQNIHINSETAV-----ISLLQPAPETYNLFDDIILLSDGQIV 225
+ +D+ I N + + ++T + +S L D II++S G+I
Sbjct: 155 LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV-------DVIIVMSGGKIS 207
Query: 226 YQGPRELVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQ 265
G + +L + A+FL+ S
Sbjct: 208 EMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 43/197 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
LNG++ + G L A++G G GK++L+ L K G + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 779 ISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LR- 833
++ Y Q ++ ++ E++ F + + + +++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 834 -----QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 887
++ +G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 888 -RNTVDTGRTVVCTIHQ 903
+ +T + H
Sbjct: 172 GPKGMLKNKTRILVTHS 188
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 736 LMGVSGAGKTTLMDVLAGRKTGGYIT-GSIKISGYPKKHETFARISGYCE---------- 784
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 785 QNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844
Q+ P +TV++++AF L+L +V + + E+ EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFP--LKLR-KVPRQEIDQRVREVAELLGLTEL---LNRKPR--E 139
Query: 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 886
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 38/205 (18%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP-KKHETFARI 779
L GVS R G + +++G SG+GK+T + + + G+I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 780 SGYCEQNDIHS---------------PFVTVHESLAFSAWLRLAP-EVDSETRKMFIEEI 823
++N + +TV E++ AP +V ++ E
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EAPIQVLGLSKHDARERA 133
Query: 824 MELVELNPLRQSLVGLPG-VNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 877
++ + VG+ G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 134 LKYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
Query: 878 RAAAIVMRTVRNTVDTGRTVVCTIH 902
V+R ++ + G+T+V H
Sbjct: 187 ELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 878
+ VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 41/195 (21%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L ++ G L A+ G +GAGKT+L+ ++ G + G IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 779 ISGYCEQNDIHSPFV---TVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
IS +C Q ++ T+ E++ F + +++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 836 L-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
+G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 889 NTVDTGRTVVCTIHQ 903
+ +T + +
Sbjct: 175 CKLMANKTRILVTSK 189
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 910
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 911 SFDEAI 916
+ D I
Sbjct: 128 AADHVI 133
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L G++ R G + ++G SG+GK+T + L + + G I I G K +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK------ 91
Query: 781 GYCEQNDIHS---------------PFVTVHESLAFSAWLRLAP-EVDSETRKMFIEEIM 824
+++ P +TV ++ LAP +V R+ + M
Sbjct: 92 ----DTNLNKVREEVGMVFQRFNLFPHMTVLNNIT------LAPMKVRKWPREKAEAKAM 141
Query: 825 ELVELNPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 879
EL++ VGL + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 142 ELLDK-------VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194
Query: 880 AAIVMRTVRNTVDTGRTVVCTIH 902
V+ ++ + G T+V H
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTH 217
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1262 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-14 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-11 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-15 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-16 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-12 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-12 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-11 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-17 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-13 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-12 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-13 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 1e-27
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 712 GVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISG 768
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +IK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 769 YPKKHETFARIS--GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
T R G+ Q P +T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
EL + P N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 887 VRNTVD-TGRTVVCTIHQPSI 906
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 71.0 bits (174), Expect = 4e-14
Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 47/233 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA-------AYISQHD 56
++GP SGK+T L + + G V + + ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
N I +T E + + G G+E
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAM-------------------------------SGEER 121
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
LK+ L+ + +SGGQ++RV + + D+ + LD
Sbjct: 122 RKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229
S T +I+ L++ ++ V+ ++ + II L DG++ +
Sbjct: 178 SKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 5e-27
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
L+GVS + G +T ++G +G+GK+TL++V+ G + G + K + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF----------IEEIMELVE 828
Q +TV E+L ++S K + +I+E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 829 LNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 888
L+ L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 889 NTVDTGRTVVCTIH 902
G T + H
Sbjct: 195 ELKAKGITFLIIEH 208
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.5 bits (206), Expect = 3e-18
Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 37/237 (15%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP----QRTAAYISQHDNHI 59
++GP SGK+T + + G L + GRV + ++ P Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 GEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVI 119
EMTV E L C G + + ++ E
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE---------------------EMVEK 130
Query: 120 TDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSST 179
L+ L L + D G+ +SGGQ K V G ++ + MDE G+
Sbjct: 131 AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TFQIVNCLRQNIHINSE-TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
I N + + + ++ + + N D + ++ +GQI+ +G E ++
Sbjct: 186 AHDIFNHVLE---LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (268), Expect = 2e-26
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 16/194 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
+N ++ + G L+G SG GKTT + ++AG T G I +
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 774 -ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R Q+ P +TV+E++AF ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 891
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 892 DTGRTVVCTIHQPS 905
T + H
Sbjct: 185 KLKVTTIYVTHDQV 198
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 94.1 bits (234), Expect = 6e-22
Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 52/252 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEM 62
LLGP GKTT L +AG + + GR+ + ++ P+ R + + Q M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV E +AF + + E + +
Sbjct: 94 TVYENIAFPLKIKKFP----------------------------------KDEIDKRVRW 119
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
++L ++ + +SGGQ++RV +V + MDE + LD+
Sbjct: 120 AAELLQIEELLN-----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
+ +++ + + I + E + D I +++ GQ++ G E +
Sbjct: 175 MRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT---EVYLR--- 227
Query: 243 KCPQRKGVADFL 254
P VA F+
Sbjct: 228 --PNSVFVATFI 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 105 bits (264), Expect = 6e-26
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 12/185 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKHETFAR 778
+ G+ G + L+G +GAGKTT + +AG R G I + + H
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 779 ISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL-VELNPLRQSLV 837
+ P +TV+E+L A+ R D E K +E I L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 897
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 898 VCTIH 902
+
Sbjct: 193 LLVEQ 197
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 64.9 bits (158), Expect = 5e-12
Identities = 45/234 (19%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 4 LLGPPASGKTTFLLALAGKLD-SSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEM 62
L+G +GKTT L A+AG + K+ + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
TV E L A + +E
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLEWI---------------------------------- 122
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+ L L G +SGG+++ + G ++ + MDE S GL +
Sbjct: 123 FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVNCLRQNIHINSE-TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ +++ IN E T ++ + Q A + +L GQIV +G +L+
Sbjct: 178 VFEVIQK---INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (254), Expect = 4e-25
Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 17/192 (8%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET 775
DK VL ++ G + G +G GKTTL+ ++ + G I +G P
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVP--ITK 67
Query: 776 FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQS 835
+ + I ++V + L A L K I + +E VE+ L++
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 894
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 895 RTVVCTIHQPSI 906
++ + + S
Sbjct: 177 IVIISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 61.9 bits (150), Expect = 3e-11
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 47/189 (24%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
+ GP GKTT L ++ L G + YNG + + + ++ +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPR 83
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
+++V + L A GV + +M+
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
L+ + + + + +S G +RV ++ A +D+ +D +
Sbjct: 111 ---LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 FQIVNCLRQ 189
+++ + +
Sbjct: 162 HKVLKSILE 170
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (250), Expect = 7e-24
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 778 RIS-----------GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMEL 826
Q+ +TV E++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 827 VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 886
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 887 VRNTVDTGRTVVCTIH 902
++ + G+T+V H
Sbjct: 192 MQQLAEEGKTMVVVTH 207
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 74.1 bits (182), Expect = 5e-15
Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 66/268 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ----------------R 47
++G SGK+TFL + S G + NG N+ +
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 48 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMK 107
+ QH N MTV E + +++ K
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVME------------APIQVLGLSKH-------------- 123
Query: 108 AVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMF 167
+A YL +G+D A + +SGGQ++RV+ + +
Sbjct: 124 -------DARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 168 MDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQ 227
DE ++ LD +++ ++Q V++ ++ +I L G+I +
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM--GFARHVSSHVIFLHQGKIEEE 230
Query: 228 GPRELVLEFFESMGFKCPQRKGVADFLQ 255
G E + F + PQ + FL+
Sbjct: 231 GDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 9e-24
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 13/191 (6%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
LN VS G + ++G SGAGK+TL+ + R T G + +++ + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 778 RIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
R G Q+ TV ++A L P+ + + R + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 895
LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 PS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 896 TVVCTIHQPSI 906
T++ H+ +
Sbjct: 193 TILLITHEMDV 203
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 79.5 bits (196), Expect = 6e-17
Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 57/256 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA------AYISQHDN 57
++G +GK+T + + + G V +G + I QH N
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ TV +A + +
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKD-------EVKRRV------------------------ 121
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
L ++GL + D +SGGQK+RV + + DE ++ LD
Sbjct: 122 ---TELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237
+TT + + L ++I+ ++ + + D + ++S+G+++ Q E F
Sbjct: 174 ATT-RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS---EVF 229
Query: 238 ESMGFKCPQRKGVADF 253
P+ F
Sbjct: 230 SH-----PKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.3 bits (247), Expect = 9e-24
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 774 ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR 833
++ Y + + E L F A + + E +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 834 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 893
+ V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 894 GRTVVCTIH 902
G T++ + H
Sbjct: 183 GLTILVSSH 191
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 78.1 bits (192), Expect = 2e-16
Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 56/258 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ--RTAAYISQHDNHIGE 61
L+GP +GKTT L ++ + S SG VT G N+ E + + +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITD 121
M E L F A + E + +
Sbjct: 90 MQGIEYLRFVAGFYASSSS----------------------------------EIEEMVE 115
Query: 122 YYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTF 181
++ GL + + S G +++ ++ +DE ++GLD
Sbjct: 116 RATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 QIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESM 240
++ L+Q ++ E L D I L+ +G IV G EL
Sbjct: 171 EVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL-------- 220
Query: 241 GFKCPQRKGVADFLQEVT 258
+ + + + + +EV
Sbjct: 221 -KERYKAQNIEEVFEEVV 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 100 bits (250), Expect = 1e-23
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARIS 780
L ++ G + A+ G +G+GKT+L+ ++ G G IK SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 781 GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLP 840
+C Q P T+ E++ F E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 900
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 901 IHQPS 905
+
Sbjct: 215 TSKME 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.6 bits (191), Expect = 5e-16
Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 53/233 (22%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIG 60
M + G SGKT+ L+ + G+L++S G + ++G ++ SQ + I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQ-FSWIM 109
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
T++E + F KA ++
Sbjct: 110 PGTIKENIIFGVSYDE--------YRYKSVVKACQLQ----------------------- 138
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTT 180
+ + ++G E +SGGQ+ R++ + A +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 FQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 232
Q+ + N +++ E D I++L G + G EL
Sbjct: 195 EQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSEL 244
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 11/190 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFA 777
L ++ G AL+G SG+GK+T+ ++ G I + G+ + +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLR-QSL 836
QN + +++ R + M+ + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
+G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 897 VVCTIHQPSI 906
+ H+ S
Sbjct: 204 SLVIAHRLST 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 66.0 bits (161), Expect = 2e-12
Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 44/238 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDN 57
L+G SGK+T + D G + +GH++ E+ + A +SQ+ +
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH 99
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ T ++ + A
Sbjct: 100 LFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF------------------ 134
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ +DN D ++G E +SGGQ++R+ ++ + + +DE ++ LD+
Sbjct: 135 --------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ I L + + N + VI+ T D+I+++ DG IV +G +L
Sbjct: 186 ESERAIQAALDE-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 21/215 (9%)
Query: 695 FDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754
F + + D V+L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 4 FRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
Query: 755 KTGGYITGSIKISGYP---KKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEV 811
G + I G+ R G Q D ++ ++++ + +V
Sbjct: 53 YI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKV 109
Query: 812 DSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871
+ + + + + + GLS QR+R+ IA LV NP I+ DE
Sbjct: 110 IYAAK---LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA 166
Query: 872 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
TS LD + ++MR + + GRTV+ H+ S
Sbjct: 167 TSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 64.9 bits (158), Expect = 5e-12
Identities = 44/238 (18%), Positives = 84/238 (35%), Gaps = 45/238 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
+ ++G SGK+T + +G+V +GH++ P R + Q DN
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQ-DN 86
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ ++ + ++ + V ++ K AG
Sbjct: 87 VLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA--------------------- 118
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ + E G+SGGQ++R+ +V + DE ++ LD
Sbjct: 119 ------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDY 172
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ I+ + + I VI + T D II++ G+IV QG + +L
Sbjct: 173 ESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 26/195 (13%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP---KKHETFA 777
L +SG R G + L+G +GAGK+TL+ +AG +G GSI+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLV 837
Y Q V L + TR + ++ + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 838 GLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 891 VDTGRTVVCTIHQPS 905
G +V + H +
Sbjct: 179 CQQGLAIVMSSHDLN 193
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 63.8 bits (155), Expect = 1e-11
Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 60/242 (24%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA---AYISQHDNHIG 60
L+GP +GK+T L +AG G + + G + + + A AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVIT 120
V L + +
Sbjct: 86 ATPVWHYLTLHQH---------------------------------------DKTRTELL 106
Query: 121 DYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALA-------MFMDEIST 173
+ L LD+ +SGG+ +RV +++ + +DE
Sbjct: 107 NDVAGALALDDKL-----GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 161
Query: 174 GLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233
LD + + L A++ T LL G+++ G RE V
Sbjct: 162 SLDVAQQSALDKILSALCQQG--LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
Query: 234 LE 235
L
Sbjct: 220 LT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 91.0 bits (226), Expect = 1e-20
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 21/223 (9%)
Query: 686 LPFEPHSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 745
+ + + D V++ + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 746 TLMDVLAGRKTGGYITGSIKISGYP--KKHETFARISGYCEQNDIHSPFVTVHESLAFSA 803
TL++++ +G I I G+ R Q D TV E++
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 804 WLRLAPEVDSETRKMFIEEIMELVELNPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVAN 862
EV + + + P + VG GV LS Q++RL+IA + N
Sbjct: 117 PTATDEEVVEAAKMA---NAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 172
Query: 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905
P I+ +DE TS LD + +I+ + + RT + H+ S
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS 214
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 79.5 bits (196), Expect = 7e-17
Identities = 47/237 (19%), Positives = 86/237 (36%), Gaps = 43/237 (18%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYIS--QHDNH 58
+G GK+T + + D + SG++ +GHN+ +F+ I Q DN
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
+ TV+E + G E+ K A
Sbjct: 103 LFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------------------- 136
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
++ L D VG E +SGGQK+R++ + + + +DE ++ LD
Sbjct: 137 -------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ I L + + T +++ T D I+++ +G IV G ++
Sbjct: 189 SESIIQEALDV-LSKDRTTLIVA---HRLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHET 775
++V+ ++ G +G SG GK+TL+ ++AG +T +G + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTP 68
Query: 776 FARIS-GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ 834
A G Q+ P ++V E+++F L A + R + ++ E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 893
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 894 GRTVVCTIHQPSI 906
GRT++ H
Sbjct: 181 GRTMIYVTHDQVE 193
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 69.2 bits (169), Expect = 2e-13
Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 52/252 (20%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA-AYISQHDNHIGEM 62
+GP GK+T L +AG + SG + M + P + Q +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
+V E ++F + G ++ +
Sbjct: 88 SVAENMSFGLKLAGAKKE-------VINQRV---------------------------NQ 113
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+VL L + D + +SGGQ++RV G +V +DE + LD++ Q
Sbjct: 114 VAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
+ + + T + E L D I++L G++ G E +
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPL---ELYHY--- 221
Query: 243 KCPQRKGVADFL 254
P + VA F+
Sbjct: 222 --PADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.0 bits (218), Expect = 9e-20
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 11/191 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP---KKHETFA 777
L G++ RPG +TAL+G +G+GK+T+ +L G + + G P +H
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQSL 836
R Q ++ E++A+ L P ++ T + P +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 895
V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R
Sbjct: 145 VDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203
Query: 896 TVVCTIHQPSI 906
+V+ S+
Sbjct: 204 SVLLITQHLSL 214
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.1 bits (187), Expect = 9e-16
Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 42/238 (17%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDN 57
+T L+GP SGK+T L + G++ +G + ++ + R A + Q +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+ +++E +A+ G+ P ++ A G
Sbjct: 98 QVFGRSLQENIAY------------------------GLTQKPTMEEITAAAVKSGAH-- 131
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ GL D V + + +SGGQ++ V ++ + +D+ ++ LD+
Sbjct: 132 ------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
++ Q+ L ++ S + ++ D I+ L G I G + ++E
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 716 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKKH 773
++ + +S + G L+G SG GKTT + ++AG + G I K+ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 774 ETFARIS---GYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELN 830
Q+ P +TV++++AF LR P + + R + E+ EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 831 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 890
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 891 V-DTGRTVVCTIHQPS 905
G T + H
Sbjct: 186 QRQLGVTTIYVTHDQV 201
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 65.3 bits (159), Expect = 4e-12
Identities = 48/258 (18%), Positives = 84/258 (32%), Gaps = 58/258 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAA-------YISQHD 56
LLGP GKTT L +AG + S G++ + + + Q
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 57 NHIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEA 116
MTV + +AF + + V + ++
Sbjct: 91 ALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV----------------------- 120
Query: 117 NVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLD 176
++LGL + R +SGGQ++RV G +V MDE + LD
Sbjct: 121 ----REVAELLGLTELLN-----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Query: 177 SSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236
+ + + + I + E + D I +++ G + G + E
Sbjct: 172 -AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPD---EV 227
Query: 237 FESMGFKCPQRKGVADFL 254
++ P VA F+
Sbjct: 228 YDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFA 777
L +S +P + A G SG GK+T+ +L + T G IT I ++ +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 778 RISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQ-SL 836
G+ Q+ T+ E+L + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 837 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 896
VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRT 190
Query: 897 VVCTIHQPS 905
+ H+ S
Sbjct: 191 TLVIAHRLS 199
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 68.4 bits (167), Expect = 4e-13
Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 42/237 (17%)
Query: 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYIS--QHDNH 58
+ GP GK+T L + +G +T +G + + + I D+
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANV 118
I T+RE L + +++LA PD
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV------------- 133
Query: 119 ITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSS 178
E ISGGQ++R+ + + +DE + LDS
Sbjct: 134 --------------------GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235
+ + L + T VI+ T D I + GQI G ++
Sbjct: 174 SESMVQKALDS-LMKGRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.4 bits (203), Expect = 6e-18
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 13/194 (6%)
Query: 717 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGSIKISGYPKK-- 772
K+V L+ V+ G ++G SGAGKTT M ++AG + G + ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 773 HETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL 832
R G Q P +T E++AF ++ E + +EE+ ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 833 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 891
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 892 DTGRTVVCTIHQPS 905
G T++ H P+
Sbjct: 189 RLGVTLLVVSHDPA 202
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 69.7 bits (170), Expect = 1e-13
Identities = 44/257 (17%), Positives = 89/257 (34%), Gaps = 57/257 (22%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ------RTAAYISQHDN 57
+LGP +GKTTF+ +AG S +G + ++ + R + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIGEMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEAN 117
+T E +AF + R++
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEE-------IRKRV------------------------ 121
Query: 118 VITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDS 177
+ K+L + + + R +SG Q++RV +V + +DE + LD+
Sbjct: 122 ---EEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 178 STTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFF 237
+++ T ++ PA + + + D + +L G++V G E + +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPE---DLY 229
Query: 238 ESMGFKCPQRKGVADFL 254
++ P VA +
Sbjct: 230 DN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.2 bits (179), Expect = 7e-15
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 15/188 (7%)
Query: 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISG-YPKKHETFARI 779
L+ +S G ++G +GAGKT ++++AG +G I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 780 SGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGL 839
+ QN P + V ++L F ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 840 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 898
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 899 CTIHQPSI 906
H +
Sbjct: 183 HITHDQTE 190
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 3e-14
Identities = 51/252 (20%), Positives = 97/252 (38%), Gaps = 55/252 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQR-TAAYISQHDNHIGEM 62
+LGP +GKT FL +AG SGR+ +G ++ + P++ A++ Q+ + M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
V++ L F R + + ++
Sbjct: 88 NVKKNLEFGMRMKKIK----------DPKRVLDT-------------------------- 111
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
+ L +++ D +SGG+++RV +V + +DE + LD T +
Sbjct: 112 -ARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-RTQE 164
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
+ +H ++ V+ + E + D I ++ DG+++ G E E FE
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPE---EIFEK--- 218
Query: 243 KCPQRKGVADFL 254
P VA F+
Sbjct: 219 --PVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.3 bits (169), Expect = 2e-13
Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 55/252 (21%)
Query: 4 LLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTA-AYISQHDNHIGEM 62
LLGP +GK+ FL +AG + G V NG ++ P+R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDY 122
+V +A+ R R + E+A + A +
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------- 120
Query: 123 YLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQ 182
D +SGG+++RV +V + +DE + +D T
Sbjct: 121 ----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 242
++ LR + E L D++ ++ +G+IV +G + E F
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLK---ELFS---- 216
Query: 243 KCPQRKGVADFL 254
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.0 bits (163), Expect = 1e-12
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 18/180 (10%)
Query: 730 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GSIKISGYPKKHETFARISGYCEQN 786
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 787 DIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846
P ++V+ ++A+ V+ R + E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 905
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 18/178 (10%), Positives = 38/178 (21%), Gaps = 39/178 (21%)
Query: 735 ALMGVSGAGKTTLMDVLAG---RKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSP 791
+ G G GKTTL+ + ++ G+ T ++ K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 792 FVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 909
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 0.001
Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 3 LLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ--RTAAYISQHDNHIG 60
++ G P GKTT + + +L + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 61 EMTVRETLAFSARCQGVGTRYDMLMELARREKAAGIKPDPDIDV 104
+ V ++ + + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 803 AWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 862
A L + E + + L + G V L+ L A+
Sbjct: 301 ASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSYQP 354
Query: 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 906
+DE + LD + +R + + + ++
Sbjct: 355 SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.003
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 735 ALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVT 794
+ G +GKT+L+ +L S + + + + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 795 VHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSL 836
++ A + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1262 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.58 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.34 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.08 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.03 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.76 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.73 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.97 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.91 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.88 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.35 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.27 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.13 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.04 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.03 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.01 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.94 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.87 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.76 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.73 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.72 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.71 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.68 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.63 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.57 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.57 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.51 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.44 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.43 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.36 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.36 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.35 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.35 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.34 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.33 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.31 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.31 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.31 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.3 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.29 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.29 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.28 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.28 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.27 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.24 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.24 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.23 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.23 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.21 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.21 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.21 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.21 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.2 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.2 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.19 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.16 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.15 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.15 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.14 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.12 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.12 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.12 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.09 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.09 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.07 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.05 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.05 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.04 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.04 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.04 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.0 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.0 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.99 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.96 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.96 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.94 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.92 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.9 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.9 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.88 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.82 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.82 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.76 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.75 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.73 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.71 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.71 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.69 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.67 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.66 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.65 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.63 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.62 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.62 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.61 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.6 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.59 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.58 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.58 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.58 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.54 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.53 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.53 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.52 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.5 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.49 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.49 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.49 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.48 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.47 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.47 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.46 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.45 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.45 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.43 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.43 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.38 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.37 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.34 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.32 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.3 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.3 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.27 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.22 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.21 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.16 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.16 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.13 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.12 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.12 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.1 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.09 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.08 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.06 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.06 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.05 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.05 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.03 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.97 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.97 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.96 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.94 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.93 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.89 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.88 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.87 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.83 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.81 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.79 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.79 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.77 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.76 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.73 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.64 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.61 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.6 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.6 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.58 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.53 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.52 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.49 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.48 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.45 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.43 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.43 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.42 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.39 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.37 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.37 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.36 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.32 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.27 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.27 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.24 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.23 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.22 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.21 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.19 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.19 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.18 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.17 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.16 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.15 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.14 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.12 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.08 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.06 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.05 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.03 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.03 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.02 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.02 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.92 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.91 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.9 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.89 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.87 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.87 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.85 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.77 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.76 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.72 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.72 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.72 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.62 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.6 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.56 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.55 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.52 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.51 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.47 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.47 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.45 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.43 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.4 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.38 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.33 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.33 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.26 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.26 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.24 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.23 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.2 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.2 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.2 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.2 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.13 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.11 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.08 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.05 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.04 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.03 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.98 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.97 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.96 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.95 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.95 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.95 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.85 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.78 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.72 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.69 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.68 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.53 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.5 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.4 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.39 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.39 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.35 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.35 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.26 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.24 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.19 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.18 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.17 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.16 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.1 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.1 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.05 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.03 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.95 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.92 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.91 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.71 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.7 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.68 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.65 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.6 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.51 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.36 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.32 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.32 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.25 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.21 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.13 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 91.12 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.08 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.08 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.03 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.96 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.8 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.8 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.67 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.6 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.46 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.34 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.34 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.27 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.1 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.03 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.63 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.62 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.31 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.29 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.13 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.94 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.91 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.83 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.74 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.66 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.34 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.23 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.22 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.06 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.99 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.66 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.17 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.93 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 86.42 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.29 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.26 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.25 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.68 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.58 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.57 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.49 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.25 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.25 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.01 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.96 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.81 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.55 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.34 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 82.22 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.73 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.95 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.93 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 80.02 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=319.00 Aligned_cols=199 Identities=26% Similarity=0.365 Sum_probs=155.8
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|+++++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 773 H-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 773 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
. ...++.+|||+|++.+++.+||+|++.|...++. .++++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999639998402088999999999999999999985-89889999148998999986332
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|++||++|+.+|++++|||||+|||+.++..+++.++++.+ .|.|+|+++|++. ++....|+.
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri 201 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKI 201 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999703998899758887889889989999999998742987999948999-999969999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=315.28 Aligned_cols=200 Identities=23% Similarity=0.315 Sum_probs=174.0
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++.++. .+.+|++||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 80-01135489963799889999999999999883069999999999999999998299643233246888887898999
Q 000838 772 KH-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 772 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 850 (1262)
.. ...++.+|||+|++.++|.+||+|++.|...++ +.++++.+++++++++.++|.+.+|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 9999999996399984020889999999999999999999858-9889999148998999986332
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.+. |.|+++++|++. ++.+..|+.
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri 207 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRI 207 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEE
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 89999766404998243068866689899989999999998731980799948999-999869999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=314.36 Aligned_cols=190 Identities=23% Similarity=0.342 Sum_probs=161.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999997899989818989998334799988933798755-3127866444477888998999999976228886
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
.++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.++|++||+|||.|+.+..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~---- 98 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---- 98 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS----
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHCCC----
T ss_conf 99999799980999999997399989---62899999998869989928522523144352201557666532336----
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50234897899985299999854688878541011024469999998198333444224885433651110045899998
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL 159 (1262)
+ ..+.+++++++++.+||.+..|..+ ..|||||||||+||||+
T Consensus 99 --~------------------------------~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral 141 (240)
T d2onka1 99 --E------------------------------RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARAL 141 (240)
T ss_dssp --C------------------------------HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHH
T ss_pred --C------------------------------HHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHH
T ss_conf --7------------------------------7889999999998638375665794-----44899998999998777
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 5598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
+.+|++++|||||||||+.++..+++.++++.+..+.|+++ ++|...++..++|+|++|++|++++.|+.+++.+
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743976999-8189999999699999998999999906999832
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=311.44 Aligned_cols=195 Identities=21% Similarity=0.279 Sum_probs=155.6
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++.+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 773 H-ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 773 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
. ...++.+|||+|+..++|.+||+|++.|...++... . +++++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999639998402088999999999999999999985-89889999148998999986332
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|++|||+|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++.+..|+.
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv 198 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRI 198 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEE
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEE
T ss_conf 1403043443677144347876799899999999999998647968999749999-999969999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=311.48 Aligned_cols=200 Identities=25% Similarity=0.318 Sum_probs=175.5
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++.++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CC---C----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 80---0----1135489963799889999999999999883069999999999999999998299643233246888887
Q 000838 772 KH---E----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNG 844 (1262)
Q Consensus 772 ~~---~----~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~ 844 (1262)
.. . ..++.+|||+|++.++|.+||.|++.|...++ ..+.++.+++++++++.++|.+.++..+ +.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8989999999999996399984020889999999999999999999858-9889999148998999986332
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+. |.|+|+++|+.. ++....|+.
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv 210 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRI 210 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-999969999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=303.48 Aligned_cols=192 Identities=26% Similarity=0.340 Sum_probs=166.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99983799999789998981898999833479998893379875-------53127866444477888998999999976
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~-------~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~ 73 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++++||+||+.|+..
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22888650234897899985299999854688878541011024469999998198333444224885433651110045
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRV 153 (1262)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRl 153 (1262)
+++.. ..+.+++++++++.++|++..|..+ +.||||||||+
T Consensus 108 ~~~~~----------------------------------~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv 148 (240)
T d1g2912 108 LRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRV 148 (240)
T ss_dssp HTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHH
T ss_pred HCCCC----------------------------------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHH
T ss_conf 72999----------------------------------8999999999998759966762993-----34999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHH
Q ss_conf 89999855980878727985502799999999999985615998999934898359973003588469808886680118
Q 000838 154 TTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELV 233 (1262)
Q Consensus 154 sIA~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l 233 (1262)
+|||||+.+|+|++|||||+|||+.++..+++.|+++.+..+.|+|+ ++|...++..++|++++|.+|++++.|+++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999999998636988999-95999999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000838 234 LE 235 (1262)
Q Consensus 234 ~~ 235 (1262)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=308.39 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=167.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999997899989818989998334799988933798755-3127866444477888998999999976228886
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +|.+|||+|++.+++++||+||+.|++.+++..
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~- 109 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP- 109 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC-
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCC-
T ss_conf 99999999982999999997589998---78799916413547700015899800335342220999999999873999-
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50234897899985299999854688878541011024469999998198333444224885433651110045899998
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL 159 (1262)
..+.+++++++++.++|++..|..+ ..||||||||++|||||
T Consensus 110 ---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 110 ---------------------------------KDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAI 151 (239)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHH
T ss_conf ---------------------------------9999999999998759855660995-----46999998899997664
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 5598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
+.+|+|++|||||||||+.++.++++.|+++.+..+.|+++ ++|...++..++|+|++|.+|++++.|+.+++..
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731980799-9489999998699999998999999859999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=308.20 Aligned_cols=203 Identities=24% Similarity=0.286 Sum_probs=173.1
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++++|++.++.... ....+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~~---------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECSS---------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 79982799969998---------14898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0113548996379988999999999999988306999999999999999999829964323324688888789
Q 000838 773 H------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLS 846 (1262)
Q Consensus 773 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lS 846 (1262)
. ..+++.+|||+|+..+++.+||+|++.|...++. .++++.+++++++++.+||.+.++..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 89999999999996399984020889999999999999999999858-9889999148998999986332
Q 000838 847 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 847 gGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||||||++||++|+.+|++|++||||+|||+.++..+++.|+++.+. |.|+|+++|+.. ++....|+.
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri 211 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCV 211 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-999869999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=308.10 Aligned_cols=192 Identities=23% Similarity=0.341 Sum_probs=168.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999837999997899989818989998334799988933798755-3127866444477888998999999976228886
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~-~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +|.+|||+|++.+++++||+||+.|+..+++.
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-- 102 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA-- 102 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC--
T ss_conf 99999899982999999996587888---8889999997788864443222343342026433378897899987599--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50234897899985299999854688878541011024469999998198333444224885433651110045899998
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL 159 (1262)
...+.+++++++++.++|++..|..+. .||||||||++|||||
T Consensus 103 --------------------------------~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL 145 (232)
T d2awna2 103 --------------------------------KKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ----------------------------------CHHHHHHHHHHHHC--------------------------CHHHHH
T ss_pred --------------------------------CHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf --------------------------------889999999999975788656648965-----6999999999999997
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 5598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
+.+|++++|||||||||+.++.++++.|+++.+..+.|+++ ++|...++..++|++++|.+|++++.|+++++.+
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 03998899758887889889989999999998742987999-9489999999699999997999999808999973
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=300.75 Aligned_cols=205 Identities=23% Similarity=0.375 Sum_probs=174.3
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+.++|++.++.... ....+|+|+|+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred C---CC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 0---01----13548996379988999999999999988306999999999999999999829964-3233246888887
Q 000838 773 H---ET----FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-LRQSLVGLPGVNG 844 (1262)
Q Consensus 773 ~---~~----~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~g~~~~~~ 844 (1262)
. .. +++.+|||+|+..++|.+||.|++.+....+.....+.+++.+++.+.++.++|.+ .++..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8989999999999996399984020889999999999999999999858-9889999148998999986332
Q 000838 845 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 845 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.+. |.|+|+++|++. ..+.+|+.
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv 215 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERI 215 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--99869989
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=310.30 Aligned_cols=202 Identities=28% Similarity=0.391 Sum_probs=175.7
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.++.+|++++++. +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 80------011354899637998899999999999998830699999999999999999982996432332468888878
Q 000838 772 KH------ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 772 ~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~l 845 (1262)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..++++.+++++++++.+||.+..|..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 98999999999999639998402088999999999999999999985-89889999148998999986332
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 846 SgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|||||||++|||+|+.+|++|++||||+|||+.++..+++.++++.+ .|.|+|+++|++. ++.+..|+.
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri 211 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRV 211 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-999969999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=304.65 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=165.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99983799999789998981898999833479998893379875------531278664444778889989999999762
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~------~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l 74 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .+|.+|||+|+..++|++||+|||.|+...
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28886502348978999852999998546888785410110244699999981983334442248854336511100458
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRls 154 (1262)
++.. ..+++++++++++.+||.+..|..++ .||||||||++
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRva 150 (242)
T d1oxxk2 110 MKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVA 150 (242)
T ss_dssp SSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHH
T ss_pred HCCC----------------------------------HHHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHH
T ss_conf 1379----------------------------------99999999999866591766648954-----59999985899
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHH
Q ss_conf 99998559808787279855027999999999999856159989999348983599730035884698088866801189
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 IA~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~ 234 (1262)
|||||+.+|+++++||||+|||+.++.++++.|+++.+..+.|+++ ++|...++..++|++++|.+|++++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635987999-979999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000838 235 E 235 (1262)
Q Consensus 235 ~ 235 (1262)
.
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=300.56 Aligned_cols=191 Identities=21% Similarity=0.304 Sum_probs=166.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 999837999997899989818989998334799988933798755------31278664444778889989999999762
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARC 74 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~------~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l 74 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|+..+++.+||+||+.|+..+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28886502348978999852999998546888785410110244699999981983334442248854336511100458
Q 000838 75 QGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVT 154 (1262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRls 154 (1262)
++.. ..+++++++++++.+||++..|..++ .|||||||||+
T Consensus 110 ~~~~----------------------------------~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRva 150 (240)
T d3dhwc1 110 DNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVA 150 (240)
T ss_dssp TTCC----------------------------------TTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHH
T ss_pred CCCC----------------------------------HHHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHH
T ss_conf 4999----------------------------------89999999999997699035548943-----49999998999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHH
Q ss_conf 99998559808787279855027999999999999856159989999348983599730035884698088866801189
Q 000838 155 TGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 234 (1262)
Q Consensus 155 IA~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~ 234 (1262)
|||||+.+|+++++||||+|||+.++.++++.|+++.+..+.|+++ ++|...++..++|++++|.+|++++.|+.+++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999999998646978999-838999999869999999799999987999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=301.40 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=148.8
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++++++.. +.+.+|+|+|+.+++||.+||+||||||||||+++|.|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 80---0113548996379988999999999999988306999999999999-----999999829964323324688888
Q 000838 772 KH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMF-----IEEIMELVELNPLRQSLVGLPGVN 843 (1262)
Q Consensus 772 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~g~~~~~ 843 (1262)
.. ..+++.++||+|++.+++ .|++|++.+... ........... ..+.++ ++.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 78989999999999996399984020889999999999999999999858-9889999148998999986332
Q 000838 844 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 844 ~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
.||||||||++|||+|+.+|+|++||||||+||+.++..+++.|+++.+. |+|+|+++|++ +..+.+|+.
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI 221 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHI 221 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEE
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEE
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--999859999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.6e-45 Score=294.68 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=174.8
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
+..+|++.++. .+.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEEC-------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89995899999-------------9999806256884897999999999999999999966988--78887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0--01135489963799889999999999999883069999999999999999998299643233246888887898999
Q 000838 773 H--ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQR 850 (1262)
Q Consensus 773 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 850 (1262)
. ...++.++||+|+..+++.+|+.|++.|.+.++. .+..+.++.++.+++.+++.+..+..++ .+|||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHH
T ss_conf 6839887218675001546878667788898998617---9989999999999986797888850453-----3799898
Q ss_pred HHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999963999840208899999999999999999998589889999148998999986332
Q 000838 851 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 851 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||++||++|+.+|++++|||||+|||+.++..+++.++++++.|+||++++|++. ++...+|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv 203 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRI 203 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999986599988733798897989999999999999965998999959899-999969999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-45 Score=297.16 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=165.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9998379999978999898189899983347999889337987553-127866444477888998999999976228886
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~-~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.+|||+|+..+++++||+|||.|+..+++..
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~- 103 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK- 103 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996476888---78899956734652165740561512111174665778888877640553-
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50234897899985299999854688878541011024469999998198333444224885433651110045899998
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL 159 (1262)
.+++++++++.++|.+..|..++ .|||||||||+|||||
T Consensus 104 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 104 ------------------------------------DPKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARAL 142 (229)
T ss_dssp ------------------------------------CHHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHT
T ss_pred ------------------------------------HHHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHH
T ss_conf ------------------------------------89999999998256555758955-----4799984014030434
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 5598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
+.+|+|++|||||||||+.++.++++.|+++.+..+.|+++ ++|...++..++|++++|.+|++++.|+++++.+
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 43677144347876799899999999999998647968999-7499999999699999997999999869999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=297.83 Aligned_cols=189 Identities=22% Similarity=0.281 Sum_probs=156.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998379999978999898189899983347999889337987553-------127866444477888998999999976
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ-------RTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~-------~~i~yv~Q~d~l~~~lTVrE~L~f~a~ 73 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ +.+|||+|+..+++++||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2288865023489789998529999985468887854101102446999999819833-344422488543365111004
Q 000838 74 CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDN-CADILVGDEMIRGISGGQKKR 152 (1262)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~-~~dT~VG~~~~~~LSGGQKrR 152 (1262)
++..+.. +..++++++.+.+..++|++ ..|..+ ..||||||||
T Consensus 110 ~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGAM-------------------------------SGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQR 153 (230)
T ss_dssp TCCSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHH
T ss_pred HHCCCCC-------------------------------CHHHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHH
T ss_conf 7224789-------------------------------999999999998876242345534880-----2389999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCC
Q ss_conf 589999855980878727985502799999999999985615998999934898359973003588469808886680
Q 000838 153 VTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 153 lsIA~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~ 230 (1262)
|+|||||+.+|++++|||||||||+.++..+++.|+++.+..+.|+|+ ++|...+ ...+|++++|.+|++++.|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDINV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-ECSCHHH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCHHH-HHHCCEEEEEECCEEEEECCC
T ss_conf 998756522788899468765469899999999999999843999999-8788899-986998999989999995257
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=298.93 Aligned_cols=195 Identities=26% Similarity=0.412 Sum_probs=93.6
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++|+|++|+++. ..+.+|+|+|+.+++||.+||+||||||||||+++|.|... +.+|+|.+||.+..
T Consensus 2 I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEEC
T ss_conf 299999999089-----------99603742489984999999999999989999999973578--88889999999944
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 0---01135489963799889999999999999883069999999999999999998299-------6432332468888
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-------NPLRQSLVGLPGV 842 (1262)
Q Consensus 773 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~~~ 842 (1262)
. ..+++.++||+|+..++ ..|++|++.+.. ...+.++ +++..+..++ ..-.++.+|.. .
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred CCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCC-C
T ss_conf 002465535288982446557-840003522357-----5543888----9999999755788876320134432787-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 878989999999999996399984020889999999999999999999858988999914899899998633
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 843 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
..||||||||++|||+|+++|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~ 206 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADR 206 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCE
T ss_conf 8669889898754434441651355647765559899999999999985-8998999978899--9984999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-44 Score=292.39 Aligned_cols=192 Identities=24% Similarity=0.275 Sum_probs=165.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99983799999789998981898999833479998893379875--5312786644447788899899999997622888
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVG 78 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~--~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~ 78 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.+.. .++.++||||++.+++++||+||+.|.+.+.+..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996698878---887999867244683988721867500154687866778889899861799
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 65023489789998529999985468887854101102446999999819833344422488543365111004589999
Q 000838 79 TRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEM 158 (1262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~a 158 (1262)
..+.++.++.++..++|.+..+..++ .||||||||++||||
T Consensus 107 ----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 107 ----------------------------------SSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARA 147 (238)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_conf ----------------------------------89999999999986797888850453-----379989899999999
Q ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHHH
Q ss_conf 855980878727985502799999999999985615998999934898359973003588469808886680118999
Q 000838 159 MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 236 (1262)
Q Consensus 159 L~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~~ 236 (1262)
++.+|+|++|||||+|||+.++.++++.++..+. .++|+++ ++|...++..++|++++|.+|++++.|+++++.+.
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 8659998873379889798999999999999996-5998999-95989999996999999989999999289999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-43 Score=286.34 Aligned_cols=201 Identities=21% Similarity=0.230 Sum_probs=170.1
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.+.++|++.++. ...+|++||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 800----------------1135489963799889999999999999883069999999999999999998299643-23
Q 000838 772 KHE----------------TFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-RQ 834 (1262)
Q Consensus 772 ~~~----------------~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 834 (1262)
... ..++.+|||+|+..+++.+||.|++.+..... ...+..+.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 32468888878989999999999996399984020889999999999999999999858988999914899899998633
Q 000838 835 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 835 ~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
..+ ..||||||||++||++|+.+|+++++||||+|||+.++..+++.|+++++.|.|+|+++|++. ++....|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred H
Q ss_conf 2
Q 000838 915 A 915 (1262)
Q Consensus 915 ~ 915 (1262)
.
T Consensus 219 i 219 (258)
T d1b0ua_ 219 V 219 (258)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-44 Score=292.73 Aligned_cols=203 Identities=23% Similarity=0.236 Sum_probs=165.8
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
-+..+|++.++. ..++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCC----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 800----113548996379988999999999999988306----------999999999999999999829964323324
Q 000838 772 KHE----TFARISGYCEQNDIHSPFVTVHESLAFSAWLRL----------APEVDSETRKMFIEEIMELVELNPLRQSLV 837 (1262)
Q Consensus 772 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~----------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 837 (1262)
... ..++.++|++|+..+++.+||.|++.+....+. ......++..++++++++.+++.+.+|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 688888789899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 838 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 838 g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
+ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.||++++|+.. ++.+..|+.
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv 220 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHL 220 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-999869999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-44 Score=292.97 Aligned_cols=200 Identities=23% Similarity=0.290 Sum_probs=167.0
Q ss_pred CEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 17999634999826602332045578547733407999578099999599983999999997899897158899997941
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
.-++.+|++.++. .+.+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7800---1-1354899637998899999999999998830699999999999999999982-996432332468888878
Q 000838 771 KKHE---T-FARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELV-ELNPLRQSLVGLPGVNGL 845 (1262)
Q Consensus 771 ~~~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~g~~~~~~l 845 (1262)
.... . .+..++|++|+..+++.+||+|++.+.+..+.. .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 9899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 846 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 846 SgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.++++++.|.||++++|+.. ++.+..|+.
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv 209 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYG 209 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-999969999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=5.9e-44 Score=288.53 Aligned_cols=190 Identities=23% Similarity=0.342 Sum_probs=157.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9998379999978999898189899983347999889337987553----127866444477888998999999976228
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ----RTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~----~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~ 76 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.....+ ..++|++|+..+++++||+||+.+++....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 886502348978999852999998546888785410110244699999981-9833344422488543365111004589
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVL-GLDNCADILVGDEMIRGISGGQKKRVTT 155 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-~L~~~~dT~VG~~~~~~LSGGQKrRlsI 155 (1262)
. + ...++.++.++..+ +|.+..|..++ .|||||||||+|
T Consensus 111 ~--~---------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 D--K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAI 150 (240)
T ss_dssp C--S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHH
T ss_pred C--H---------------------------------HHHHHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHH
T ss_conf 8--8---------------------------------89999999999874176888758543-----389999999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 99985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 156 GEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 156 A~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
||||+.+|++++|||||+|||+.++.++++.++++.+ .+.|++ .++|...++..++|++++|.+|++++.|+++++.+
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til-~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEE-EEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 9999829987400398867999999999999999996-899899-99588999999699999998999999848999842
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.2e-45 Score=295.93 Aligned_cols=198 Identities=25% Similarity=0.371 Sum_probs=156.5
Q ss_pred CEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 17999634999826602332045578547733407999578099999599983999999997899897158899997941
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++|+++. ..+.+|+|+|+.+++|+.+||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEE
T ss_conf 87999988999599-----------99760644389983998999988999809999999971278--630001539987
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCC
Q ss_conf 780---0113548996379988999999999999988306999999999999999999829964-------323324688
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNP-------LRQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~g~~ 840 (1262)
... ..+++.++||+|++.+++ .|++|++.|.. ...+.++ +.++++..++.+ -.++.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC-----CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 530788886341456510156899-87999985158-----6799999----9999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 888789899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 841 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
...||||||||++|||+|+.+|++++||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+.
T Consensus 152 -g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~i 222 (255)
T d2hyda1 152 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKI 222 (255)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEE
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEE
T ss_conf -89849999999999999855998999837654479779999999999875-3888999968999--99859999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6e-44 Score=288.46 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=165.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9998379999978999898189899983347999889337987553----127866444477888998999999976228
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ----RTAAYISQHDNHIGEMTVRETLAFSARCQG 76 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~----~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~ 76 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++....++ +.++|++|+..+++++||.||+.++...++
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88650234897899985299999854688878541011024469999998198333444224885433651110045899
Q 000838 77 VGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTG 156 (1262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA 156 (1262)
... ....-.. ...+ ...+..++++.++..+++.+..|..++ .|||||||||+||
T Consensus 109 ~~~-------~~~~~~~-~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESP-------LNSLFYK-KWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIG 162 (254)
T ss_dssp SCH-------HHHHHHC-SSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHH
T ss_pred CCC-------HHHHHHH-CCCC-------------CHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHH
T ss_conf 450-------4566542-1353-------------289999999999876196302059535-----6991888899999
Q ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 9985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 157 EMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 157 ~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
||++.+|++++|||||+|||+.++.++++.|+++.. .+.|++ .++|...++..++|+|++|.+|++++.|+.++..+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til-~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFL-IIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE-EECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997-899899-99476999998699999996998999966899865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-45 Score=298.39 Aligned_cols=196 Identities=26% Similarity=0.392 Sum_probs=123.8
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99963499982660233204557854773340799957809999959998399999999789989715889999794178
Q 000838 693 LIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKK 772 (1262)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 772 (1262)
++++|++|+++. .+.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.+.+
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 0---01135489963799889999999999999883069999999999999999998299-------6432332468888
Q 000838 773 H---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVEL-------NPLRQSLVGLPGV 842 (1262)
Q Consensus 773 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~g~~~~ 842 (1262)
. ..+++.++||+|++.+++. |++|++.+.. ....+.+. +++.++..++ .+..++.+|.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 24678887436797566545785-3454301244----55542356----7789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 8789899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 843 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 843 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
..||||||||++|||||+.+|+|++|||||++||+.++..+++.|++++ +|+|+|+++|+++ ....+|+.
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i 207 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKI 207 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEE
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--99849999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-44 Score=292.10 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=155.4
Q ss_pred CEEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 17999634999826602332045578547733407999578099999599983999999997899897158899997941
Q 000838 691 HSLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
..+.++|++++++.. ...+|+++|+.+++||.+||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~~-----------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPGR-----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSSS-----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECCC-----------CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 079999889992999-----------9763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 780---01135489963799889999999999999883069999999999999999998299643-------23324688
Q 000838 771 KKH---ETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPL-------RQSLVGLP 840 (1262)
Q Consensus 771 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~g~~ 840 (1262)
... ..+++.++||+|++.++ ..|+++++.+.. +...+.++ ++++++..++.+. .++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 21110665420687995025447-862024332057----22089999----9999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 888789899999999999963999840208899999999999999999998589889999148998999986332
Q 000838 841 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 841 ~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
...||||||||++|||+|+.+|++++||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+.
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v 220 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEI 220 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEE
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEE
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--99859999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-43 Score=286.52 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=159.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 99983799999789998981898999833479998893379875----------------53127866444477888998
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFV----------------PQRTAAYISQHDNHIGEMTV 64 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~----------------~~~~i~yv~Q~d~l~~~lTV 64 (1262)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|+..+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf 999999976-22888650234897899985299999854688878541011024469999998198333-4442248854
Q 000838 65 RETLAFSAR-CQGVGTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNC-ADILVGDEMI 142 (1262)
Q Consensus 65 rE~L~f~a~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~-~dT~VG~~~~ 142 (1262)
.||+.++.. ..+. ...+.++.+.+++..++|.+- .+...
T Consensus 107 ~env~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~p----- 147 (258)
T d1b0ua_ 107 LENVMEAPIQVLGL----------------------------------SKHDARERALKYLAKVGIDERAQGKYP----- 147 (258)
T ss_dssp HHHHHHHHHHTTCC----------------------------------CHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred CHHHHHHHHHHCCC----------------------------------CHHHHHHHHHHHHHHCCCCHHHHCCCC-----
T ss_conf 21365657876299----------------------------------989999999999998299524430682-----
Q ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 33651110045899998559808787279855027999999999999856159989999348983599730035884698
Q 000838 143 RGISGGQKKRVTTGEMMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDG 222 (1262)
Q Consensus 143 ~~LSGGQKrRlsIA~aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G 222 (1262)
..|||||||||+|||||+.+|+++++||||+|||+.++.++++.|+++.+ .+.| ++.++|...++..++|+|++|.+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~t-il~vtHdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKT-MVVVTHEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCC-EEEECSCHHHHHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCC-EEEEECCHHHHHHHCCEEEEEECC
T ss_conf 20567788898999998439987885245556887888899876554103-6883-389948999999869999999799
Q ss_pred EEEEECCCCHHHH
Q ss_conf 0888668011899
Q 000838 223 QIVYQGPRELVLE 235 (1262)
Q Consensus 223 ~iv~~G~~~~l~~ 235 (1262)
++++.|+++++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.1e-43 Score=282.66 Aligned_cols=179 Identities=23% Similarity=0.355 Sum_probs=158.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 407999578099999599983999999997899897158899997941780-0113548996379988999999999999
Q 000838 723 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH-ETFARISGYCEQNDIHSPFVTVHESLAF 801 (1262)
Q Consensus 723 ~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f 801 (1262)
|+|+.+. +|.++|+||||||||||+++|+|... +.+|+|.+||.+... ...++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHH
Q ss_conf 98830699999999999999999982996432332468888878989999999999996399984020889999999999
Q 000838 802 SAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 881 (1262)
Q Consensus 802 ~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~ 881 (1262)
.. + ..++.+++++++++++.+||.+..+..+ +.||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 999999999858-9889999148998999986332
Q 000838 882 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 882 ~i~~~l~~~~~~-g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
.+++.++++.+. |.|+|+++|++. ++....|+.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri 197 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEV 197 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 9999999998743976999818999-999969999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-42 Score=279.27 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=154.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989998334799988933798755---31278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+ ++.||+|||.++.+..
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~-- 104 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVL-LNRSIIDNISLANPGM-- 104 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCC-TTSBHHHHHCTTSTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCC-CCCCCCCCCCCCCCCC--
T ss_conf 99999999998999999997357888---88999999994400246553528898244655-7840003522357554--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
..+....+++. ....-....++...+|.+|.. +.+|||||||||+|||
T Consensus 105 --~~~~~~~~~~~-----------------------------~~~~~~i~~~~~~~~t~i~~~-g~~LSGGq~QRvalAR 152 (241)
T d2pmka1 105 --SVEKVIYAAKL-----------------------------AGAHDFISELREGYNTIVGEQ-GAGLSGGQRQRIAIAR 152 (241)
T ss_dssp --CHHHHHHHHHH-----------------------------HTCHHHHTTSTTGGGSBCSTT-TTCCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHH-----------------------------HHHHHHHHHHHCCHHHHCCCC-CCCCCHHHHHHHHHHH
T ss_conf --38889999999-----------------------------755788876320134432787-8866988989875443
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
|++.+|+|++||||||+||+.++..+++.|+++. +++|+|+. +|.. +....+|+|++|++|++++.|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~i-tH~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIII-AHRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEE-CSSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH--CCCEEEEE-ECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4441651355647765559899999999999985--89989999-7889-9998499999998999999889999982
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.2e-43 Score=286.48 Aligned_cols=194 Identities=20% Similarity=0.298 Sum_probs=153.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989998334799988933798755---31278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .||+||+.++.....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~~- 104 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDY- 104 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCS-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCCCCCC-
T ss_conf 99999999997999999999960989---8779889988442467888743679756654578-534543012445554-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
..+......+.. ........+++..+|.+|+. +.+|||||||||+|||
T Consensus 105 --~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~i~~~-g~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 105 --TDEDLWQVLDLA-----------------------------FARSFVENMPDQLNTEVGER-GVKISGGQRQRLAIAR 152 (242)
T ss_dssp --CHHHHHHHHHHH-----------------------------TCTTTTTSSTTGGGCEESTT-SBCCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHH-----------------------------HHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
T ss_conf --235677899999-----------------------------75554203742101523687-8987999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
|++.+|+|++||||||+||+.++..+++.|+.+. +++|+|+. +|. .+....+|+|++|++|++++.|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~i-tH~-l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVI-AHR-LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEE-CCS-HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-ECC-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9852998999658865569889999988788871--79989999-787-99998499999998999999999999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-43 Score=285.63 Aligned_cols=172 Identities=21% Similarity=0.325 Sum_probs=95.9
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 47733407999578099999599983999999997899897158899997941780011354899637998899999999
Q 000838 718 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHE 797 (1262)
Q Consensus 718 ~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e 797 (1262)
+++|+|+|+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .|++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 99999883069999999999999999998-------29964323324688888789899999999999963999840208
Q 000838 798 SLAFSAWLRLAPEVDSETRKMFIEEIMEL-------VELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 870 (1262)
Q Consensus 798 ~l~f~~~l~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDE 870 (1262)
++.|.. ...... .+.+++. ..+.+..++.++.. ...||||||||++|||+|+.+|+|++|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----9999999776999984612332355554-23779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 899999999999999999998589889999148998999986332
Q 000838 871 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 871 ptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||++||+.+...+++.+......++|+|+++|++ +....+|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI 227 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKI 227 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEE
T ss_conf 5544898999999999998862899999992528--999859999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-42 Score=280.38 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=156.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989998334799988933798755---31278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.++ +.||+||+.++...+.
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~- 116 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKP- 116 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCCC-
T ss_conf 99999999984999999986143787---689988998531101378887765404565002-7634655454210130-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
..+.....+. .........+|++..+|.++. .+.+||||||||++|||
T Consensus 117 --~~~~~~~~~~-----------------------------~~~~~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 117 --TMEEITAAAV-----------------------------KSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALAR 164 (251)
T ss_dssp --CHHHHHHHHH-----------------------------HHTCHHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHH
T ss_pred --HHHHHHHHHH-----------------------------HHHHHHHHHHCCCCCHHHHHC-CCCCCCHHHCEEEEEEE
T ss_conf --2788999999-----------------------------998999998561211136751-67668954704899860
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
|++.+|+|++||||||+||+.++.++++.|+++.+..++|+++ ++|.. +....+|+|++|++|++++.|+++++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4456870787167576568536899999999976506989999-95979-9998599999998999999889999985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-41 Score=272.44 Aligned_cols=194 Identities=23% Similarity=0.357 Sum_probs=152.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989998334799988933798755---31278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+ .+.|+++|+.++..-.
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~~n~~~~~~~~-- 116 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHL-FNDTVANNIAYARTEE-- 116 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCC-CSSBHHHHHHTTTTSC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCC-CCCCHHHHHHHCCCCC--
T ss_conf 99999999985999999986216888---46898788012111066542068799502544-7862024332057220--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
...+...+++ +... .. -..-.|+++.+|.+|.. +.+|||||||||+|||
T Consensus 117 -~~~~~i~~a~---~~~~------------------------l~--~~i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 117 -YSREQIEEAA---RMAY------------------------AM--DFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIAR 165 (253)
T ss_dssp -CCHHHHHHHH---HTTT------------------------CH--HHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHH
T ss_pred -CCHHHHHHHH---HHHH------------------------HH--HHHHHCCCCCHHHHCCC-CCCCCHHHHHHHHHHH
T ss_conf -8999999999---9981------------------------79--99973554410143488-8984999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
|++.+|+|++||||||+||+.++..+++.|+.+. +++|+|+ ++|.. +....||+|++|.+|++++.|+++++.+
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~-itH~l-~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSEEEE-ECSCG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9954998899516444589889999999998752--2788999-98879-9998599999998999999889999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.1e-42 Score=275.16 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=154.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989998334799988933798755---31278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~---~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.++ +.||+|||.|+....
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~~-- 119 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTA-- 119 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSC--
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCCC--
T ss_conf 99998899980999999997127863---000153998753078888634145651015689-987999985158679--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
..+...++++ . +...-....|+++.||.+|+ .+.+||||||||++|||
T Consensus 120 --~~~~~~~al~---~--------------------------~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 120 --TDEEVVEAAK---M--------------------------ANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp --CHHHHHHHHH---H--------------------------TTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHH
T ss_pred --CHHHHHHHHH---H--------------------------HCCHHHHHHCCCCCCCHHCC-CCCCCCHHHHHHHHHHH
T ss_conf --9999999999---9--------------------------69799997362420103338-88984999999999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 985598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 158 MMVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
|++.+|+|++||||||+||+.++..+++.|+... +++|+|+. +|. .+....||+|++|++|++++.|+++++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~i-tH~-~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AHR-LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEE-CSS-GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEE-ECC-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9855998999837654479779999999999875--38889999-689-99998599999998999999889999986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.6e-39 Score=257.39 Aligned_cols=183 Identities=21% Similarity=0.301 Sum_probs=150.3
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 79996349998266023320455785477334079995780999995999839999999978998971588999979417
Q 000838 692 SLIFDEVTYSVDMPQEMKLQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPK 771 (1262)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 771 (1262)
.++++|++++++ +++|+++|+.+++|++++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80011354899637998899999999999998830699999999999999999982996432332468888878989999
Q 000838 772 KHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRK 851 (1262)
Q Consensus 772 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 851 (1262)
.. .+..++|++|+..++..+|++|.+.+.+.++... .+++ .+.+.++.+++.+... . ...|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~-~-----~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKK-K-----LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTS-B-----GGGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCC-C-----CCCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----9999998748856301-2-----6868971888
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999963999840208899999999999999999998589889999148
Q 000838 852 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 903 (1262)
Q Consensus 852 r~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq 903 (1262)
|++||++|+.+|++++|||||+|||..++..+++.++++.+.+.++++++|+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~ 184 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999998864998999868620169999999999999998679999999916
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-38 Score=255.17 Aligned_cols=180 Identities=23% Similarity=0.363 Sum_probs=150.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 7733407999578099999599983999999997899897158899997941780---0113548996379988999999
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKH---ETFARISGYCEQNDIHSPFVTV 795 (1262)
Q Consensus 719 ~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv 795 (1262)
..|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+... .......+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCCCE
Q ss_conf 999999988306999999999999999999829964323324688888789899999999999963-------9998402
Q 000838 796 HESLAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 868 (1262)
Q Consensus 796 ~e~l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~-------~p~il~l 868 (1262)
.+.+.+... . ..+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001----4----668999999998659876767684-----456998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 08899999999999999999998589889999148998999986332
Q 000838 869 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEA 915 (1262)
Q Consensus 869 DEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~~ 915 (1262)
||||+|||+.++..+.+.++++++.|.||++++|++. ++.+..|+.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri 202 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRA 202 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 1877778989999999999999867999999967799-999979999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-38 Score=252.60 Aligned_cols=184 Identities=22% Similarity=0.308 Sum_probs=152.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9998379999978999898189899983347999889337987553---1278664444778889989999999762288
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGV 77 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~---~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~ 77 (1262)
+++|+||||||||||+++|+|.. ++ +|+|.++|.++.....+ ...+|++|+.......|+.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 99999899980999999994887-99---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 86502348978999852999998546888785410110244699999981983334442248854336511100458999
Q 000838 78 GTRYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGE 157 (1262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~ 157 (1262)
..++.+++++..++|.+..+..++ .||||||||++||+
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -------------------------------------TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAA 138 (231)
T ss_dssp -------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHH
T ss_conf -------------------------------------689999999986598767676844-----56998899999999
Q ss_pred HHHC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCC
Q ss_conf 9855-------980878727985502799999999999985615998999934898359973003588469808886680
Q 000838 158 MMVG-------PALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 230 (1262)
Q Consensus 158 aL~~-------~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~ 230 (1262)
+++. +|+|++|||||+|||+.++..+++.++.+.. .+.|+++ ++|...++...+|++++|.+|++++.|+.
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986-7999999-96779999997999999979989998899
Q ss_pred CHHH
Q ss_conf 1189
Q 000838 231 ELVL 234 (1262)
Q Consensus 231 ~~l~ 234 (1262)
+++.
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHH
T ss_conf 9981
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-38 Score=253.68 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=143.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99983799999789998981898999833479998893379875531278664444778889989999999762288865
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~~ 80 (1262)
+++|+||||||||||+++|+|.++|+ +|.|.++| .++||+|++.+++ .||+|||.|+..... .+
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~ 127 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSYDE--YR 127 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCCCH--HH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCCCC--HH
T ss_conf 99999899982999999995797478---82899999----------9999816430267-603214203334560--57
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 02348978999852999998546888785410110244699999981983334442248854336511100458999985
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL~ 160 (1262)
++ ... +. ++.......+++..+|.+|. .+.+|||||||||+||||++
T Consensus 128 ~~---~~~---~~--------------------------~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 128 YK---SVV---KA--------------------------CQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVY 174 (281)
T ss_dssp HH---HHH---HH--------------------------TTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHH
T ss_pred HH---HHH---HH--------------------------HHHHHHHHHCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHH
T ss_conf 99---999---99--------------------------77699998461233235555-42377999999999999998
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCCCHHHH
Q ss_conf 598087872798550279999999999998561599899993489835997300358846980888668011899
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 235 (1262)
Q Consensus 161 ~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~~~~l~~ 235 (1262)
.+|+|++||||||+||+.++..+++.+.... ..++|+|+ ++|+ .+....+|+|++|.+|+++++|+++++..
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~-itH~-~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRIL-VTSK-MEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEE-ECSC-HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEE-EECH-HHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 6963513338554489899999999999886-28999999-9252-89998599999998999999878999960
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-35 Score=235.44 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=135.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99983799999789998981898999833479998893379875531278664444778889989999999762288865
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 80 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~~ 80 (1262)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++... +..++|++|+..+...+|++|++.+.+.+.+....
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 103 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999971999999996620567---78899998962673--67089995013578882899999999975488637
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 02348978999852999998546888785410110244699999981983334442248854336511100458999985
Q 000838 81 YDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMMV 160 (1262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL~ 160 (1262)
+.++...++.+++.+. +..+ ..||||||||++||++++
T Consensus 104 ------------------------------------~~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 104 ------------------------------------KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp ------------------------------------HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTT
T ss_pred ------------------------------------HHHHHHHHHHCCCCCC-CCCC-----CCCCCCHHHHHHHHHHHH
T ss_conf ------------------------------------9999999987488563-0126-----868971888899999886
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 5980878727985502799999999999985615998999934898359973003588469
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSD 221 (1262)
Q Consensus 161 ~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~ 221 (1262)
.+|++++|||||+|||+.++..+++.|++..+. +++++++.||.. ..+|.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=2.3e-16 Score=115.94 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=95.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC--CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 998379999978999898189899983347999889337987553--127866444477888998999999976228886
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 79 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~--~~i~yv~Q~d~l~~~lTVrE~L~f~a~l~~~~~ 79 (1262)
.+|.||||||||||++.|+|.+++. .|.+...+.+......+ ..+.+...........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50234897899985299999854688878541011024469999998198333444224885433651110045899998
Q 000838 80 RYDMLMELARREKAAGIKPDPDIDVYMKAVATEGQEANVITDYYLKVLGLDNCADILVGDEMIRGISGGQKKRVTTGEMM 159 (1262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~L~~~~dT~VG~~~~~~LSGGQKrRlsIA~aL 159 (1262)
+ + .. +.....+++|+++|.++++++
T Consensus 72 ~------------------------------------------------~--~~-----~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 S------------------------------------------------Y--GV-----NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp T------------------------------------------------E--EE-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------------------------------------------H--HC-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 2------------------------------------------------3--03-----762566532013789999997
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 5598087872798550279999999999998561599899993489835997300358846980888668
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~vL~~G~iv~~G~ 229 (1262)
..+|+++++|||....+ .....++.+.......+.+++.+ +|. .+.....|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~-~h~-~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVAT-IPI-RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEE-CCS-SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEE-ECC-HHHHHHHCEEEEEECCEEEEECC
T ss_conf 40997423027773100--45799999998750579789999-744-77898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=2e-13 Score=97.50 Aligned_cols=146 Identities=14% Similarity=0.017 Sum_probs=82.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999599983999999997899897158899997941780011354899637998899999999999998830699999
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFSAWLRLAPEVD 812 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~l~~~~~~~ 812 (1262)
.++|+||||||||||++++++.... ..|.+...+.+......+ .++..............+. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKF------FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------C--CEEEEEETTCCEEEEEETT------CCCSSEET
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_conf 8999989993899999999814888--864699877132888876--5311233667778875411------34554430
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998299643233246888887898999999999999639998402088999999999999999999985
Q 000838 813 SETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 892 (1262)
Q Consensus 813 ~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~ 892 (1262)
+ .+. +.....+++|++++.++++++..+|+++++|||....+ ........+.++.+
T Consensus 72 ~-------------~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred H-------------HHC---------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf 2-------------303---------76256653201378999999740997423027773100--45799999998750
Q ss_pred -CCCEEEEEECCCCHHHHHHHHH
Q ss_conf -8988999914899899998633
Q 000838 893 -TGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 893 -~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
.+.++++++|+.. .....|+
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~ 148 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKE 148 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHH
T ss_pred CCCCEEEEEECCHH--HHHHHCE
T ss_conf 57978999974477--8986365
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=1e-08 Score=68.06 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHHHH----HHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 887898999999999999----6399984020889999999999999999999858988999914899899998633
Q 000838 842 VNGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 842 ~~~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
...+|+|||+...++..+ ..++.++++|||-++|++.....+.+.|+..++ +.-+|+|+|.|. +.+.+|+
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~ 290 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADL 290 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCC
T ss_conf 1102577766777776655654226744554320335797899999999998554-887999989889--9973242
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=2.7e-09 Score=71.64 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCCCCCCCCHHHHHHHH----HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 43365111004589999----85598087872798550279999999999998561599899993489835997300358
Q 000838 142 IRGISGGQKKRVTTGEM----MVGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDII 217 (1262)
Q Consensus 142 ~~~LSGGQKrRlsIA~a----L~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~ 217 (1262)
...+|+|||+.+.++.. ...+++++++|||-++||+.....+.+.|+..+. +.-+++ ++|+++++..+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 8--4698
Q 000838 218 L--LSDG 222 (1262)
Q Consensus 218 v--L~~G 222 (1262)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=7.3e-09 Score=68.95 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 87898999999999999----6399984020889999999999999999999858988999914899899998633
Q 000838 843 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 843 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
..+|||||.++++|..+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+|+|+| ++.+..|.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~ 404 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDA 404 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCC
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--99973661
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=2.6e-08 Score=65.47 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHH--H--HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 43365111004589999--8--5598087872798550279999999999998561599899993489835997300358
Q 000838 142 IRGISGGQKKRVTTGEM--M--VGPALAMFMDEISTGLDSSTTFQIVNCLRQNIHINSETAVISLLQPAPETYNLFDDII 217 (1262)
Q Consensus 142 ~~~LSGGQKrRlsIA~a--L--~~~p~IllLDEpTSgLDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~~lfD~I~ 217 (1262)
...+|||||.++++|-. + +.++++++||||+++||+..+..+.+.|+..+. .+.-+|+++ |.+++...+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iT--H~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVIS--LKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEEC--SCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEE--CCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728-998899995--8789997366179
Q ss_pred EE
Q ss_conf 84
Q 000838 218 LL 219 (1262)
Q Consensus 218 vL 219 (1262)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=8.5e-05 Score=43.51 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=34.3
Q ss_pred HHCCCCCCEECCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 6399984020889999999999-99999999985898899991489
Q 000838 860 VANPSIIFMDEPTSGLDARAAA-IVMRTVRNTVDTGRTVVCTIHQP 904 (1262)
Q Consensus 860 ~~~p~il~lDEptsgLD~~~~~-~i~~~l~~~~~~g~tvi~~~Hqp 904 (1262)
+.+..++++||..+|=|+.... ....+++.+.+.+..+++++|..
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 8977278554545686233200258888888862376137865202
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=3.7e-05 Score=45.74 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHCCCCCCEECCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCCC
Q ss_conf 96399984020889999999999999-999999858-988999914899
Q 000838 859 LVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPS 905 (1262)
Q Consensus 859 l~~~p~il~lDEptsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~Hqp~ 905 (1262)
...+.+++++||+.+|=++.....+. ..++.+..+ +..+++|+|...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 4546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=0.00013 Score=42.33 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCC
Q ss_conf 5980878727985502799999999-99998561599899993489
Q 000838 161 GPALAMFMDEISTGLDSSTTFQIVN-CLRQNIHINSETAVISLLQP 205 (1262)
Q Consensus 161 ~~p~IllLDEpTSgLDs~s~~~i~~-~L~~~~~~~~~tvii~i~q~ 205 (1262)
+...++++||+.+|=|+..+..+.. .++.+....+..++++.|.+
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 4660885322235877456667898764543204544289852468
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.88 E-value=2.9e-05 Score=46.40 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred HCCCEEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 55980878727985502799999999-999985615998999934898359973
Q 000838 160 VGPALAMFMDEISTGLDSSTTFQIVN-CLRQNIHINSETAVISLLQPAPETYNL 212 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgLDs~s~~~i~~-~L~~~~~~~~~tvii~i~q~~~e~~~l 212 (1262)
.+...++++||..+|=|+..+..+.. .++.+.. .+..+++++|+ .++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY--FELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC--HHHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC--HHHHHH
T ss_conf 8977278554545686233200258888888862-37613786520--233322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.78 E-value=7.7e-05 Score=43.79 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=73.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 73340799957809999959998399999999789989715889999794178001135489963799889999999999
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESL 799 (1262)
Q Consensus 720 il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l 799 (1262)
-|+.+.+-+.+|+++.|.|++|+||||++.-++..... ..| ..+.|+.-+ ++..+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~--~~g---------------~~v~~~s~E------~~~~~~~ 80 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMG---------------KKVGLAMLE------ESVEETA 80 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHH--TSC---------------CCEEEEESS------SCHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--HCC---------------CCEEEEEEC------CCHHHHH
T ss_conf 68887469789808999947999799999999972655--336---------------634576401------1113577
Q ss_pred H-HHHHH-HCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 9-99883-069999999999-----9999999982-99643233246888887898999999999999639998402088
Q 000838 800 A-FSAWL-RLAPEVDSETRK-----MFIEEIMELV-ELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 871 (1262)
Q Consensus 800 ~-f~~~l-~~~~~~~~~~~~-----~~~~~~l~~l-~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEp 871 (1262)
. +.+.. ..+.......+. ...++..+.+ +..... .. .........+.....-...--.+|+++++|--
T Consensus 81 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l 156 (277)
T d1cr2a_ 81 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFH-LY---DSFAEAETDRLLAKLAYMRSGLGCDVIILDHI 156 (277)
T ss_dssp HHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEE-EE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEE-EE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 699998645871010122222145677888988740352146-62---14331068999998654321367625997054
Q ss_pred C-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 9-----999--999999999999999858-988999914899
Q 000838 872 T-----SGL--DARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 905 (1262)
Q Consensus 872 t-----sgL--D~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~ 905 (1262)
+ .+- +......++..++++++. +.+|+++.| +.
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q-~~ 197 (277)
T d1cr2a_ 157 SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH-LK 197 (277)
T ss_dssp EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE-CC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECC-CC
T ss_conf 212034654430677899999999976501655203103-56
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.54 E-value=0.0012 Score=36.23 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.6
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 0799957809999959998399999999789989
Q 000838 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 757 (1262)
Q Consensus 724 vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~ 757 (1262)
+...++.+.-+.|.|+.||||||+|++|.+...+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999983788899940356625789998653014
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00076 Score=37.57 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=73.6
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 77334079995780999995999839999999978998971588999979417800113548996379988999999999
Q 000838 719 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHES 798 (1262)
Q Consensus 719 ~il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~ 798 (1262)
.++.+ . .||+++.|.|++|+|||||+--|+..... |.-...+.... ...+-|+..++ +..+.
T Consensus 21 ~li~G---~-~pg~~~~i~G~~G~GKS~l~l~la~~ia~----g~~~~~~~~~~----~~~vl~~~~E~------~~~~~ 82 (274)
T d1nlfa_ 21 YVLPN---M-VAGTVGALVSPGGAGKSMLALQLAAQIAG----GPDLLEVGELP----TGPVIYLPAED------PPTAI 82 (274)
T ss_dssp EEETT---E-ETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCCTTCCCCCC----CCCEEEEESSS------CHHHH
T ss_pred HHHCC---C-CCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCCCCCCCCCC----CCCEEEEECCC------HHHHH
T ss_conf 98689---5-58958999928999899999999999976----99721112357----87368985123------49999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCC---C-
Q ss_conf 999988306999999999999999999829964323324688888789899999999999963999840208899---9-
Q 000838 799 LAFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 874 (1262)
Q Consensus 799 l~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts---g- 874 (1262)
..-...+. ...+.... ......+.+....+... ....- ..+.--.....+++++++|.-+. +
T Consensus 83 ~~Rl~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 83 HHRLHALG--AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp HHHHHHHH--TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred HHHHHHHH--HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 99999986--23686665----31233323214567420-----35789---9999988752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf -9999999999999999858-988999914899
Q 000838 875 -LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 905 (1262)
Q Consensus 875 -LD~~~~~~i~~~l~~~~~~-g~tvi~~~Hqp~ 905 (1262)
-|......++..++.+++. +.+++++.|...
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 181 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 181 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCC
T ss_conf 232256899998877776447975401310055
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=7.6e-05 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.|+..+++|+||.|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.27 E-value=0.0001 Score=43.05 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 9983799999789998981898999833479998
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTY 35 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i 35 (1262)
++++|+||.|||||+|.|.+...-. .|+|.-
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs~ 128 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKLR---VSEVSE 128 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC---------
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHH---CCCCCC
T ss_conf 8997889877888877305355501---068420
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00016 Score=41.84 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=16.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|+|||||||||+++.|..+.+
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999999999999984589
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.04 E-value=4e-05 Score=45.54 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.|+.++++|+||.|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.04 E-value=0.00025 Score=40.62 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=15.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7809999959998399999999789
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.|+++.|.||+||||||+.+.|+.+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9859999889999889999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00011 Score=42.85 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=17.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++|.|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.01 E-value=0.0047 Score=32.58 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 9999996399984020889999999999999999999858988999914899899998633
Q 000838 854 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 914 (1262)
Q Consensus 854 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~~~~fd~ 914 (1262)
.+..+|=.+|++++..|.. |..++...+ +.+..|..|+.|.|-.+ .+..+++
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHH
T ss_conf 9999984138889845768---759999999----99724985899833676--6766543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00031 Score=40.04 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=15.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|+||||+|||||.+.|.-..+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00028 Score=40.28 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.87 E-value=0.0085 Score=31.00 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=69.0
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 3340-799957809999959998399999999789989715889999794178001135489963799889999999999
Q 000838 721 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESL 799 (1262)
Q Consensus 721 l~~v-s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l 799 (1262)
|+++ .|-+++|+++.|.|++|+|||+|..-++.... ..+ .....|+.-+ .+..+..
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~---~~~--------------~~~~~~~s~e------~~~~~~~ 71 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI---IEF--------------DEPGVFVTFE------ETPQDII 71 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH---HHH--------------CCCEEEEESS------SCHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HHC--------------CCCCCCCCCC------CCHHHHH
T ss_conf 9885568996983999994799999999999999999---856--------------8874201266------7999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHH--HHCCCCCCEECCCCCC-
Q ss_conf 99988306999999999999999999829964323324688888789899999-9999999--6399984020889999-
Q 000838 800 AFSAWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGL- 875 (1262)
Q Consensus 800 ~f~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr-~~ia~~l--~~~p~il~lDEptsgL- 875 (1262)
........ . .+...+.............. ............ +.-.... -.+|++++.|--+.-.
T Consensus 72 ~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 72 KNARSFGW----D-------LAKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHGGGTC----C-------HHHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHCCC----C-------HHHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998499----8-------48988714302444210335-444430245899999999998863122200207889987
Q ss_pred ---CHH-HHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf ---999-999999999999858988999914899
Q 000838 876 ---DAR-AAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 876 ---D~~-~~~~i~~~l~~~~~~g~tvi~~~Hqp~ 905 (1262)
+.. ....+...++...+.+.|++++.|...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 6057267899999999999863971688421025
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.00013 Score=42.44 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 998379999978999898189899983347999
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVT 34 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~ 34 (1262)
++++|+||+|||||+|.|.|...-. .|+|.
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC-------------
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 9998778734878987515176764---03555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00049 Score=38.77 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+|++||||||+.+.|+..+
T Consensus 9 ivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.00048 Score=38.82 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.72 E-value=0.00037 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++|+|++|+|||||+|.|.|.-
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9998999987999999852987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.71 E-value=0.0006 Score=38.19 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=11.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|-.+.|+||+||||||+.+.|+.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 88899982899988999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.00057 Score=38.34 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++|.||+|+|||||.+.|+.+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999899999999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.63 E-value=0.00031 Score=39.98 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099999599983999999997899
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
|.++.|+|||||||||+.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.63 E-value=0.00044 Score=39.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+++|.||.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=3.2e-05 Score=46.15 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=19.0
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 33407999578099999599983999999997
Q 000838 721 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 721 l~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~ 752 (1262)
.++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.57 E-value=0.00078 Score=37.48 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.|.++.|+|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0057 Score=32.07 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHCCCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 98559808787279855-----027999999999999856159989999348983
Q 000838 158 MMVGPALAMFMDEISTG-----LDSSTTFQIVNCLRQNIHINSETAVISLLQPAP 207 (1262)
Q Consensus 158 aL~~~p~IllLDEpTSg-----LDs~s~~~i~~~L~~~~~~~~~tvii~i~q~~~ 207 (1262)
....+++++++|--+.- -|......++..|+.++...+.+++ .+||..-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi-~v~H~~K 181 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV-FLHHASK 181 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE-EEEEC--
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-HHHHCCC
T ss_conf 75267658962813542266523225689999887777644797540-1310055
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.56 E-value=0.00081 Score=37.37 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
..|+|++|||||||++.|..++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99980999989999999999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.51 E-value=0.00069 Score=37.84 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|.||+||||||+.+.|+.+..
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999988999999999959
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.49 E-value=0.00077 Score=37.53 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.44 E-value=0.00098 Score=36.87 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
++||-||+|||||||.+.|+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789887899999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.43 E-value=0.00043 Score=39.11 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECC
Q ss_conf 0999995999839999999978998-971588999979
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGSIKISG 768 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~~-~~~~~G~i~~~g 768 (1262)
+.++|+|++|||||||++.|..+.. .+..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.42 E-value=0.01 Score=30.50 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=68.6
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 07999578099999599983999999997899-89715889999794178001135489963799889999999999999
Q 000838 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGSIKISGYPKKHETFARISGYCEQNDIHSPFVTVHESLAFS 802 (1262)
Q Consensus 724 vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~ 802 (1262)
+.|-+++|..+.|.|++|+|||+|..-++... ..+ ....|+.-+ .+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHH
T ss_conf 568986984999991899999999999999998723-------------------244112126------7999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCCCEECCCC---CCCHH
Q ss_conf 8830699999999999999999982996432332468888878989999999999-9963999840208899---99999
Q 000838 803 AWLRLAPEVDSETRKMFIEEIMELVELNPLRQSLVGLPGVNGLSTEQRKRLTIAV-ELVANPSIIFMDEPTS---GLDAR 878 (1262)
Q Consensus 803 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~-~l~~~p~il~lDEpts---gLD~~ 878 (1262)
..+. .+.. +.. ..+.....+.. .......+. .-.+.. .--.+|++++.|.-+. +.+..
T Consensus 74 ~~~~----~~~~-------~~~-~~~~~~~~~~~-----~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWG----MDFE-------EME-RQNLLKIVCAY-----PESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTS----CCHH-------HHH-HTTSEEECCCC-----GGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCC----CCHH-------HHH-HCCCEEEEEEE-----CCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 9829----9869-------985-45861799730-----001017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 9999999999998-5898899991489
Q 000838 879 AAAIVMRTVRNTV-DTGRTVVCTIHQP 904 (1262)
Q Consensus 879 ~~~~i~~~l~~~~-~~g~tvi~~~Hqp 904 (1262)
........+.+++ +.+.+++++.|..
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~ 162 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSD 162 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 999999999999998698399998567
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00084 Score=37.28 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.36 E-value=0.00097 Score=36.89 Aligned_cols=22 Identities=50% Similarity=0.578 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|.||+||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.35 E-value=0.0011 Score=36.58 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+||+|.+|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00084 Score=37.29 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++|+|++|+|||||+|.|.+.-
T Consensus 6 V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996799
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0001 Score=42.96 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998379999978999898189
Q 000838 1 MTLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1262)
+|+|+|+|||||||+|++|.--
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 0899889999879999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.00076 Score=37.54 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|.||+|||||||.+.|+..+.
T Consensus 10 I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999989999999999849
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.33 E-value=0.0012 Score=36.35 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0011 Score=36.66 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.|.||+|+|||||++.++..+.
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988999719999999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.31 E-value=0.0015 Score=35.79 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=9.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
..+.|+|||||||+.+.|.
T Consensus 5 Iii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.0015 Score=35.77 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+||+|++|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00096 Score=36.91 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.|.++.|+||||+|||||.+.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.31 E-value=0.0016 Score=35.60 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.|.|++||||||+.+.|+..+.
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999999728
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.30 E-value=0.00064 Score=38.01 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|.||+||||||+.+.|+..+
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999980
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0019 Score=35.05 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 799957809999959998399999999789
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.|-+++|+++.|.||+|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.29 E-value=0.0015 Score=35.74 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999599983999999997899
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.29 E-value=0.001 Score=36.73 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.28 E-value=0.00085 Score=37.24 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999839999999978998
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
.+.+.||+|+|||||.+.|++...
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999889799889999999999865
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.28 E-value=0.0013 Score=36.10 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.|+||+||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0016 Score=35.55 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.|+|..
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998999999996777
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.26 E-value=0.00072 Score=37.72 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.26 E-value=0.0009 Score=37.11 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599983999999997
Q 000838 733 LTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~ 752 (1262)
++.|+||+||||||+.+.|+
T Consensus 8 iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999998899999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.24 E-value=0.0011 Score=36.62 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999995999839999999978
Q 000838 732 VLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.0013 Score=36.17 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.23 E-value=0.00086 Score=37.23 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.0013 Score=36.12 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.22 E-value=0.0017 Score=35.30 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.21 E-value=0.0013 Score=36.18 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+|.+|+|||||+|.|.|...
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.21 E-value=0.0014 Score=35.87 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0018 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|+||||+||+||++.|....+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999899999999999997097
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.21 E-value=0.0019 Score=35.14 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=11.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 78099999599983999999997
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~ 752 (1262)
+|-.+.|+||+||||||.-+.|+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 96389998999998899999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0016 Score=35.58 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.-.+||.||+|+|||||++.|..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 32897438999989999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0015 Score=35.63 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-+.|+|||||||+||.+.|....
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 69998999999899999999748
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0017 Score=35.35 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=19.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|-|++||||||+.+.|+..+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0015 Score=35.78 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++|+|||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0017 Score=35.45 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.+.|.||+|+|||||++.++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 69999889997199999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0021 Score=34.79 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++++|||||+|.|+|.-
T Consensus 4 I~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996888
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.14 E-value=0.002 Score=34.94 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+.+|+||+||||||+.+.|+-.+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.12 E-value=0.002 Score=34.92 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|.|++||||||+.+.|+.++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999898999999999998
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.00094 Score=36.99 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999599983999999997899
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
..+.|+||||+||+||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.12 E-value=0.0016 Score=35.61 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|.||+||||||+.+.|+..++
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0017 Score=35.43 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+|||||||+|+.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.09 E-value=0.0013 Score=36.11 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCCHH
Q ss_conf 99999963999840208899999999999999999998589-8899991489989
Q 000838 854 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSID 907 (1262)
Q Consensus 854 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~Hqp~~~ 907 (1262)
.+-.+|=.+|+.++++|--.. ++. .+.+ .+ ..| ..++.|+|-.+..
T Consensus 227 ll~~~lR~~pd~iivgEiR~~---ea~-~~l~---a~-~tGh~g~~tT~Ha~s~~ 273 (323)
T d1g6oa_ 227 CLKSCLRMRPDRIILGELRSS---EAY-DFYN---VL-CSGHKGTLTTLHAGSSE 273 (323)
T ss_dssp HHHHHTTSCCSEEEESCCCST---HHH-HHHH---HH-HTTCSCEEEEECCSSHH
T ss_pred HHHHHHCCCCCCCCCCCCCCH---HHH-HHHH---HH-HHCCCCEEEEECCCCHH
T ss_conf 999974349985457866746---599-9999---99-81698579987879999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.07 E-value=0.001 Score=36.75 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999995999839999999978998
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
.+++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.05 E-value=0.0019 Score=35.03 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||+|.|+|.
T Consensus 8 I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999688
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0019 Score=35.03 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+++|||||+|.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0015 Score=35.72 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+..+
T Consensus 11 I~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999985
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0014 Score=35.99 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+|-|++|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.002 Score=34.86 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.|+||||||||||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0026 Score=34.24 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0018 Score=35.15 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099999599983999999997899
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
|=.++++|++++|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.00 E-value=0.0018 Score=35.20 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0028 Score=34.01 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||+|.|.|..
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.99 E-value=0.0027 Score=34.12 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.96 E-value=0.0026 Score=34.20 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECC
Q ss_conf 8099999599983999999997899-8971588999979
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGSIKISG 768 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~-~~~~~~G~i~~~g 768 (1262)
.-.++|.||+|+|||||++.|.... ..+..-|-+.+|-
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp 89 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 159861179988899999999998763687513443465
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0015 Score=35.65 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++|+|++++|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0015 Score=35.75 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+||+|++++|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.92 E-value=0.0019 Score=35.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0023 Score=34.50 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..+.||+||||||+.+.|+-.+
T Consensus 5 I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999996
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0029 Score=33.92 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999599983999999997899
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++.|+||+||||||+-+.|+.+.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0014 Score=35.93 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|.||+|||||||++.|...+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.002 Score=34.94 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||..+.|+-.+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997999999899999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.88 E-value=0.0023 Score=34.54 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0016 Score=35.45 Aligned_cols=26 Identities=42% Similarity=0.455 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.82 E-value=0.0024 Score=34.43 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
.+|+|++.||||||+|.|++
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.77 E-value=0.0023 Score=34.60 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=9.9
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999978999898189
Q 000838 3 LLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1262)
.|+||+||||||+.+.|+..
T Consensus 12 ~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 12 FVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899999879999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.76 E-value=0.0029 Score=33.92 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.75 E-value=0.0024 Score=34.43 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
..|.|+|||||||+-+.|+..+.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.74 E-value=0.0024 Score=34.45 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++|+|++|+|||||++.|.+
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999967
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.74 E-value=0.0029 Score=33.94 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.003 Score=33.81 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.++||+|+|||-|.+.||+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 799899998899999999987
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.71 E-value=0.0022 Score=34.70 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.71 E-value=0.0023 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0035 Score=33.44 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999839999999978998
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
.+.|+||+||||||+-+.|+.+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.69 E-value=0.0038 Score=33.16 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|-||+||||||..+.|+-.+.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.69 E-value=0.0032 Score=33.68 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||..+.|+-.+
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.67 E-value=0.0022 Score=34.72 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+|++.||||||++.|.+.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0028 Score=34.01 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 780999995999839999999978
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.65 E-value=0.0028 Score=33.98 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|.|||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.63 E-value=0.0031 Score=33.77 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++.||+||||||+.++|++.+.
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889799889999999999865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.62 E-value=0.0027 Score=34.08 Aligned_cols=22 Identities=41% Similarity=0.452 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+.-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996598
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0049 Score=32.52 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79995780999995999839999999978
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.|-+++|+++.|.||+|+|||||..-++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.62 E-value=0.0035 Score=33.40 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..++|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0029 Score=33.93 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
++||.|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0021 Score=34.82 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0045 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.59 E-value=0.0039 Score=33.09 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+||+|+.++|||||+|.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.58 E-value=0.0029 Score=33.93 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++|+|++|+|||||++.+.+..
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999998099
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.58 E-value=0.0041 Score=32.97 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.58 E-value=0.0038 Score=33.21 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.|+|++||||||+-+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0047 Score=32.61 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998379999978999898189
Q 000838 1 MTLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1262)
+++++|++||||||+.+-++..
T Consensus 16 liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999899999999976
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.54 E-value=0.0039 Score=33.13 Aligned_cols=22 Identities=59% Similarity=0.863 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.53 E-value=0.0032 Score=33.63 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0022 Score=34.65 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++++|||||+|.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0063 Score=31.80 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.+.||+|+||||+.++++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.50 E-value=0.0045 Score=32.70 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.49 E-value=0.0041 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|+||+||||||+.+.|+-.+
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0047 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=30.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9998379999978999898189899983347999889337987553127866444477888
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGE 61 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~ 61 (1262)
+++|-|++||||||+.+.|...+... .....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.49 E-value=0.0051 Score=32.41 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.|+||+||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.0042 Score=32.94 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++|++|+|||||++.|.+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999958998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.47 E-value=0.0042 Score=32.93 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0023 Score=34.57 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
++++|++++|||||+|.|.+...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0037 Score=33.27 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.45 E-value=0.0043 Score=32.82 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.45 E-value=0.0046 Score=32.66 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.-+.+.||+|+|||.|.++|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.45 E-value=0.0036 Score=33.33 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|.+|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.43 E-value=0.0055 Score=32.17 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++|+..+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.43 E-value=0.003 Score=33.78 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..|.|++|+|||||++.|...+
T Consensus 54 igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8611799888999999999987
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.0047 Score=32.63 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.0046 Score=32.65 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|++||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.38 E-value=0.0059 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++.++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.37 E-value=0.0047 Score=32.60 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.++|++||||||+-+.|+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.34 E-value=0.0041 Score=32.97 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.33 E-value=0.0052 Score=32.34 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.33 E-value=0.005 Score=32.44 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++||+|+|||.|.++|+....
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99989999888899999862132
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.32 E-value=0.0083 Score=31.05 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7999578099999599983999999997
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~ 752 (1262)
.|-+++|+++.|.||+|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.30 E-value=0.006 Score=31.95 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=15.6
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999997899989818
Q 000838 1 MTLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G 21 (1262)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0044 Score=32.78 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|.||+||||+|+-+.|+..+.
T Consensus 6 I~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99779998898999999999969
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.29 E-value=0.004 Score=33.06 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 799957809999959998399999999789
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.|-+++|+++.|.|++|+|||++..-++..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798628859999917999989999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.27 E-value=0.0066 Score=31.70 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.|+||+||||||+.+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.27 E-value=0.0063 Score=31.81 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.22 E-value=0.0069 Score=31.55 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.0057 Score=32.10 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.16 E-value=0.0067 Score=31.65 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0076 Score=31.28 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.13 E-value=0.006 Score=31.94 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0021 Score=34.77 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
..+.|+|||||||+-+.|+..+.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.12 E-value=0.0062 Score=31.86 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
-+.+.||+|+|||++.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 7998896999889999998620
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0088 Score=30.91 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.++.||+|+||||+..+++....
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0074 Score=31.38 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++||+||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.09 E-value=0.0082 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7809999959998399999999789
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.08 E-value=0.0091 Score=30.82 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=27.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 578099999599983999999997899897158899997941
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGSIKISGYP 770 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 770 (1262)
+.|.++-+.|.|||||||+-+.|+.+.......-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.0067 Score=31.63 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.06 E-value=0.0084 Score=31.02 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.|+||+||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.06 E-value=0.0089 Score=30.88 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|.+|||||||++.|.+..
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996688
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.05 E-value=0.0085 Score=30.99 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.|+||+||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.05 E-value=0.0052 Score=32.32 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=35.1
Q ss_pred CCCEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 598087872798550---279999999999998561599899993489---------835997300358846
Q 000838 161 GPALAMFMDEISTGL---DSSTTFQIVNCLRQNIHINSETAVISLLQP---------APETYNLFDDIILLS 220 (1262)
Q Consensus 161 ~~p~IllLDEpTSgL---Ds~s~~~i~~~L~~~~~~~~~tvii~i~q~---------~~e~~~lfD~I~vL~ 220 (1262)
.+|++++.|..+.-+ +..........|...++..+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.03 E-value=0.003 Score=33.81 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+.+|-|+|||||||+.+.|....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999780999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.01 E-value=0.024 Score=28.21 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=26.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 73340799957809999959998399999999789
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 720 il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++.....+ .|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 178999999-9999999818999989999999985
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.97 E-value=0.0052 Score=32.36 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-+.+.||+|+|||+|.+++++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.027 Score=27.89 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.97 E-value=0.007 Score=31.52 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.96 E-value=0.0062 Score=31.84 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.+.||+|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.94 E-value=0.0058 Score=32.02 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999599983999999997899
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.93 E-value=0.0094 Score=30.72 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
.+|.|+.||||||+.+.+.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988888788999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0079 Score=31.20 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57809999959998399999999789
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
++..-+.+.||+|+|||++.+.|+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98886786689988822899999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.92 E-value=0.0098 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
++++|+..+|||||++.|.|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.89 E-value=0.0049 Score=32.52 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+|-|+.||||||+++.|+..+
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999988899999999870
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.88 E-value=0.016 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+||+|.+.+|||||+++|++
T Consensus 12 kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799978999989999999977
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.87 E-value=0.0061 Score=31.89 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|-|+.||||||+++.|+...
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.005 Score=32.43 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79995780999995999839999999978
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.|-+++|+++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.011 Score=30.39 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.|+||+||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.81 E-value=0.011 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57809999959998399999999789
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++-++.+.||.||||||++..+...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 41054898767877744779998666
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.012 Score=30.04 Aligned_cols=23 Identities=43% Similarity=0.823 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++.||+|+|||++.++|+....
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.79 E-value=0.0078 Score=31.24 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.-.||||||+|+|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.77 E-value=0.0089 Score=30.87 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+||+|..++|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.011 Score=30.24 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=13.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 780999995999839999999978
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.|.+++|-|+.||||||+.+.|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 805999989988899999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.73 E-value=0.011 Score=30.42 Aligned_cols=23 Identities=57% Similarity=0.704 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
..+.||+|+||||+.++++..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.66 E-value=0.011 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+|-+-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.64 E-value=0.0092 Score=30.77 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|++|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.61 E-value=0.011 Score=30.18 Aligned_cols=24 Identities=46% Similarity=0.738 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
.++.||+|+||||+.++++..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.007 Score=31.53 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|-|+.||||||+++.|+..++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.60 E-value=0.0073 Score=31.39 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-+.+.||+|+|||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.60 E-value=0.014 Score=29.62 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=15.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
+..++++||+|+||||.+-=|+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999989999988999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.013 Score=29.77 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
.+|.|..||||||..+.+..
T Consensus 6 IgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99789886889999999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.54 E-value=0.0073 Score=31.41 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=22.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9578099999599983999999997899
Q 000838 728 FRPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 728 ~~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+++..-+.+.||+|+|||+|.+++++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.53 E-value=0.011 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.254 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
.+++||.++|||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.014 Score=29.62 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599983999999997
Q 000838 733 LTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~ 752 (1262)
++||-|++|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99837998788999999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.49 E-value=0.014 Score=29.67 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++.||+|||||++.++|+....
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.48 E-value=0.0092 Score=30.78 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.002 Score=34.93 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|++++|||||+|.|+|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.43 E-value=0.025 Score=28.02 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=24.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 73340799957809999959998399999999789
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 720 il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++. +...-.|.-+.+.|+||+||||+...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.0025 Score=34.31 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++++|||||+|.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.42 E-value=0.0097 Score=30.64 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.011 Score=30.40 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.37 E-value=0.013 Score=29.93 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.014 Score=29.74 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.016 Score=29.30 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=11.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|..+++-|+.||||||+.+.|+.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87899989988879999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.32 E-value=0.013 Score=29.81 Aligned_cols=22 Identities=50% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.32 E-value=0.01 Score=30.51 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.++.||+|+|||++.+++++...
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.27 E-value=0.014 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.013 Score=29.75 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.24 E-value=0.019 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|.-+||||||+|+|.|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.23 E-value=0.019 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099999599983999999997899
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
...+.|.||+|+||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.023 Score=28.25 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995780999995999839999999978
Q 000838 726 GAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 726 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|-+++|.++.+.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.21 E-value=0.013 Score=29.83 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++.||+|+||||+.+++++...
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.19 E-value=0.011 Score=30.30 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.19 E-value=0.0057 Score=32.06 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.016 Score=29.25 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.17 E-value=0.013 Score=29.90 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
++|.||+|+|||||++.++....
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.014 Score=29.57 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+..
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.015 Score=29.39 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|++|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.14 E-value=0.018 Score=28.98 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.++.||+|+|||++.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.019 Score=28.76 Aligned_cols=25 Identities=44% Similarity=0.737 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999995999839999999978998
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
-.++|+||.++|||||||.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999889999979999999809987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.019 Score=28.78 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=11.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|..+++-|+.||||||+.+.|+.
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
T ss_conf 68999989988869999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.017 Score=29.14 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.06 E-value=0.014 Score=29.56 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCC
Q ss_conf 998379999978999898---18989
Q 000838 2 TLLLGPPASGKTTFLLAL---AGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L---~G~~~ 24 (1262)
.+|+||.|||||||...| +|..+
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99995898998999999999648534
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.06 E-value=0.0066 Score=31.70 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
+++.|++|+||||+.+.+++.+++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899889985299999999873798
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.018 Score=28.92 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
++++|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.05 E-value=0.014 Score=29.66 Aligned_cols=21 Identities=48% Similarity=0.480 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+||.|||||||...|...
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999948898099999999997
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.018 Score=28.96 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..+.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.03 E-value=0.016 Score=29.21 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
++|.||+|+||||+++.++..+..
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 688898999899999999999754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.013 Score=29.81 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.016 Score=29.27 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959998399999999789
Q 000838 734 TALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
+.+.||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999889998705469999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.02 E-value=0.02 Score=28.67 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|+-.||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.02 E-value=0.013 Score=29.75 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.014 Score=29.61 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.016 Score=29.23 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.91 E-value=0.016 Score=29.21 Aligned_cols=22 Identities=36% Similarity=0.612 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+.|+|-+.+|||||+|+|++--
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997899998999999997789
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.90 E-value=0.022 Score=28.40 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.89 E-value=0.034 Score=27.20 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=26.0
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 73340799957809999959998399999999789
Q 000838 720 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 720 il~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
-++. ++..-.|.-+.+.|+||+||||+.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.025 Score=28.10 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.87 E-value=0.017 Score=29.12 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+||+|.+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.019 Score=28.88 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|++|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.022 Score=28.47 Aligned_cols=23 Identities=48% Similarity=0.791 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++.||+|+|||++.++++....
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.027 Score=27.85 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.017 Score=29.19 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.01 Score=30.55 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999995999839999999978998
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
+..++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.018 Score=28.94 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
++|+|++|+|||||++.+.
T Consensus 7 v~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989929899999997
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.026 Score=27.93 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.014 Score=29.56 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999973
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.72 E-value=0.029 Score=27.64 Aligned_cols=23 Identities=43% Similarity=0.420 Sum_probs=16.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
..+.++||+|+||||.+-=|+.+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 68999899999889999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.72 E-value=0.029 Score=27.70 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999995999839999999978
Q 000838 732 VLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
..++++||+|+||||.+-=|+.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999988999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.72 E-value=0.021 Score=28.58 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.023 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995780999995999839999999978
Q 000838 726 GAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 726 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
..+-.|+..+|.|++|+|||||+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.69 E-value=0.019 Score=28.83 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=31.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 998379999978999898189899983347999889337987553127866444
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQH 55 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~ 55 (1262)
.+++||+|||||-|.+.|++.++ ---+..++.... .+|||..+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~-----VPFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC----------CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEEEEECCEEE------ECCEEECC
T ss_conf 79989999889999999998738-----988986255114------11111044
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.03 Score=27.59 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.016 Score=29.23 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+++|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.015 Score=29.40 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.56 E-value=0.025 Score=28.02 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+++.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.017 Score=29.14 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.022 Score=28.47 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.023 Score=28.33 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.022 Score=28.44 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9984020889999999999999999999858988999914899
Q 000838 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 863 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~ 905 (1262)
.+++++||.- .+.......+.+.+.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH
T ss_conf 1899996632-0002378999988631120-023201267087
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.52 E-value=0.13 Score=23.56 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=33.1
Q ss_pred CCCEEEEEECCCCCCC----HHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCCEEEEC
Q ss_conf 5980878727985502----7999999999999856159989999348983--------5997300358846
Q 000838 161 GPALAMFMDEISTGLD----SSTTFQIVNCLRQNIHINSETAVISLLQPAP--------ETYNLFDDIILLS 220 (1262)
Q Consensus 161 ~~p~IllLDEpTSgLD----s~s~~~i~~~L~~~~~~~~~tvii~i~q~~~--------e~~~lfD~I~vL~ 220 (1262)
.+|++++.|..+.-.+ ..........+....+..+.++++..|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 312220020788998760572678999999999998639716884210255422246762335362999988
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.021 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++|+|.+|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.47 E-value=0.015 Score=29.41 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.47 E-value=0.02 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.077 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.021 Score=28.59 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=33.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998379999978999898189899983347999889337987553127866444477888998999999976
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMGEFVPQRTAAYISQHDNHIGEMTVRETLAFSAR 73 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~~~~~~~~i~yv~Q~d~l~~~lTVrE~L~f~a~ 73 (1262)
++.|-|++|||||||...|.-.+... . .....++.++.+|. .+|-.|-...+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~--------~--------~~~~~v~~iS~Ddf---Y~t~~~r~~L~~~ 82 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK--------Y--------GGEKSIGYASIDDF---YLTHEDQLKLNEQ 82 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH--------H--------GGGSCEEEEEGGGG---BCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--------H--------CCCCCEEEECCCCC---CCCHHHHHHHHHH
T ss_conf 99837998788999999999999987--------2--------77860676356777---7888999998521
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.02 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+|++|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.021 Score=28.54 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++.|.||+||||||++.-++...
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999589999999999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.028 Score=27.76 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.40 E-value=0.02 Score=28.69 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
.+++||..+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.034 Score=27.20 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7809999959998399999999789
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.02 Score=28.70 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|.+|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899088999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.028 Score=27.73 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++|+|++|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.014 Score=29.62 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.33 E-value=0.028 Score=27.78 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999995999839999999978
Q 000838 732 VLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
..++++||+|+||||.+-=|+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEEECSCCC----HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989999998999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.034 Score=27.22 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.022 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.036 Score=27.11 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=9.4
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999978999898189
Q 000838 3 LLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1262)
+++||+|+||||.+--|+-+
T Consensus 13 ~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 13 LMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899999989999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.03 Score=27.61 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
..+.||+|+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.24 E-value=0.023 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999837999997899989818989
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
+.+++||+|+||||.+--|+.+..
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.033 Score=27.28 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|-|.-||||||+++.|...+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989987899999999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.20 E-value=0.026 Score=27.96 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
+++.|+||+||||+...|..+
T Consensus 18 vli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999818999989999999985
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.022 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99984020889999999999999999999858988999914899
Q 000838 862 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 862 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~ 905 (1262)
+.+++++||.-. |...+...+.+.+... .....+|++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCC
T ss_conf 724999424333-4543111221002213-56643000102111
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.028 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.20 E-value=0.024 Score=28.13 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
+++.|+||+||||+...|..+
T Consensus 17 vl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999989999999985
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.026 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.13 E-value=0.017 Score=29.12 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
++.+.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.025 Score=28.02 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
..++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.021 Score=28.60 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.025 Score=28.12 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.08 E-value=0.03 Score=27.60 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.03 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.05 E-value=0.025 Score=28.06 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 9983799999789998981898999833479998893379
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDSSLKVSGRVTYNGHNMG 41 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~sG~V~i~G~~~~ 41 (1262)
..+.|.|||||||+.+.|...+... ..--.+.++|..++
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIR 65 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHHH
T ss_conf 9998999999899999999887774-27508997536788
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.04 E-value=0.025 Score=28.01 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5780999995999839999999978998
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
+.+.++.+.||+|+|||++.++|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.03 Score=27.54 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|++|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.021 Score=28.52 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.00 E-value=0.02 Score=28.70 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.98 E-value=0.018 Score=28.99 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++||+|+||||.+--|+-++
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.97 E-value=0.02 Score=28.65 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.96 E-value=0.032 Score=27.39 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
+.|+|-+-+|||||+++|++-
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 888899999889999999779
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.95 E-value=0.04 Score=26.80 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.028 Score=27.79 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.032 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.023 Score=28.31 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
.+++|++|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.89 E-value=0.022 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++||+|+||||.+--|+.++.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.87 E-value=0.045 Score=26.44 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95780999995999839999999978
Q 000838 728 FRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 728 ~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+||.++++-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.87 E-value=0.038 Score=26.89 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
-+|++|.-.+|||||++.|.|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.033 Score=27.27 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.028 Score=27.74 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++-+.+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.025 Score=28.09 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.038 Score=26.94 Aligned_cols=22 Identities=45% Similarity=0.856 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..+.||+|+||||+..+++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.043 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.72 E-value=0.031 Score=27.47 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++||+|+||||.+--|+.++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.041 Score=26.75 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.021 Score=28.53 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.+++|++|+|||||++.+.+..
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999908899999998498
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.69 E-value=0.03 Score=27.55 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.68 E-value=0.046 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.62 E-value=0.023 Score=28.26 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=18.6
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999997899989818989
Q 000838 3 LLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.042 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.035 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.032 Score=27.39 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.034 Score=27.21 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
.++.||+|+||||+..+++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.50 E-value=0.04 Score=26.80 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
.+++||..+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.047 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.40 E-value=0.041 Score=26.74 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.39 E-value=0.034 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.39 E-value=0.029 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.35 E-value=0.027 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.35 E-value=0.037 Score=27.02 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99837999997899989818
Q 000838 2 TLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1262)
.+++||.++|||||+..|..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994479999999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.042 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.056 Score=25.89 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.045 Score=26.44 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.039 Score=26.83 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=8.1
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99837999997899989
Q 000838 2 TLLLGPPASGKTTFLLA 18 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~ 18 (1262)
++|+|++|||||++++.
T Consensus 53 ~~I~G~tGsGKT~~l~~ 69 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRE 69 (433)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCHHHHHHH
T ss_conf 89990799968999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.24 E-value=0.052 Score=26.09 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998379999978999898
Q 000838 2 TLLLGPPASGKTTFLLAL 19 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L 19 (1262)
++++|.+|+|||||++-+
T Consensus 9 illlG~~~vGKTsll~~~ 26 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999889999989
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.027 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.04 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.19 E-value=0.052 Score=26.10 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999995999839999999978
Q 000838 732 VLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
+-++|+|..|+|||||...|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0999994889809999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.036 Score=27.04 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
++++|++|+|||||++.+.
T Consensus 9 i~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929999999997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.18 E-value=0.061 Score=25.63 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
.+|.|+.||||||+.+.|.
T Consensus 4 IgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9997999988999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.046 Score=26.41 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.039 Score=26.89 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.15 E-value=0.044 Score=26.50 Aligned_cols=49 Identities=4% Similarity=0.053 Sum_probs=37.9
Q ss_pred HHCCCCCCEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 639998402088999-9999999999999999858988999914899899
Q 000838 860 VANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 908 (1262)
Q Consensus 860 ~~~p~il~lDEptsg-LD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~~~~ 908 (1262)
..+.+++++|+--.= -+...+..+..++......|+.+|+|+..|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.10 E-value=0.046 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.10 E-value=0.058 Score=25.76 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+.++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.05 E-value=0.084 Score=24.76 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999959998399999999789
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
-.+||+|-+.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.03 E-value=0.036 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
+++.|+||+||||+.-.|..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.06 Score=25.67 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++++|++|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.057 Score=25.81 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.059 Score=25.75 Aligned_cols=18 Identities=56% Similarity=0.818 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 998379999978999898
Q 000838 2 TLLLGPPASGKTTFLLAL 19 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L 19 (1262)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.063 Score=25.57 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.038 Score=26.94 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9998379999978999898189
Q 000838 1 MTLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1262)
++.|.||+||||||+..-++-.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999838999889999999998
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.91 E-value=0.05 Score=26.20 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599983999999997
Q 000838 733 LTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~ 752 (1262)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.065 Score=25.45 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599983999999997
Q 000838 733 LTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~ 752 (1262)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.71 E-value=0.066 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=29.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCCC
Q ss_conf 99957809999959998399999999789-9897158899997941
Q 000838 726 GAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGSIKISGYP 770 (1262)
Q Consensus 726 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g~-~~~~~~~G~i~~~g~~ 770 (1262)
+-++.|.++.+.||+|+|||||.-.++.. ...+. -.+++|...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCC
T ss_conf 98666336999648874889999999998754898--899998976
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.033 Score=27.27 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++.|-|.-|||||||++-+....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.68 E-value=0.058 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.65 E-value=0.087 Score=24.69 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995780999995999839999999978
Q 000838 726 GAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 726 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|-++.|.++-+-||+|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.04 Score=26.77 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|++|+|||||++-+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.061 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=10.2
Q ss_pred CCCCCCHHHH---HHHHHHCCCEEEEEE
Q ss_conf 6511100458---999985598087872
Q 000838 145 ISGGQKKRVT---TGEMMVGPALAMFMD 169 (1262)
Q Consensus 145 LSGGQKrRls---IA~aL~~~p~IllLD 169 (1262)
=||.=|-... |..++..+.++++.|
T Consensus 58 ~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 58 ATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7999689999999999984799889996
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.54 E-value=0.051 Score=26.10 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.059 Score=25.72 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
++++|.+|+|||||++-+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999989989999999997098
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.50 E-value=0.067 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.|.-.+.+.||+|+|||.|-+.|++..
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 688638887799850889999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.072 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.36 E-value=0.1 Score=24.27 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=24.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 79995780999995999839999999978
Q 000838 725 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 725 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
=..+-.|+..+|.|++|+|||+|+.-++.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 25636788777667999898999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.05 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.++-|+.||||||+.+.|+..+.
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988879999999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.32 E-value=0.044 Score=26.54 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCEECCCC-------CCCHH-HHHHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 99999999999963999840208899-------99999-999999999999---8-589889999148
Q 000838 848 EQRKRLTIAVELVANPSIIFMDEPTS-------GLDAR-AAAIVMRTVRNT---V-DTGRTVVCTIHQ 903 (1262)
Q Consensus 848 Gerkr~~ia~~l~~~p~il~lDEpts-------gLD~~-~~~~i~~~l~~~---~-~~g~tvi~~~Hq 903 (1262)
+|++--.+-.. ++.|.|+|+||--+ +.++. ..+.+-+.|.++ . ..+.-||.++..
T Consensus 169 ~e~~~~~~f~~-a~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 169 FNVFVDDIARA-MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHHHHHHHHHH-HHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHH-HHHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 78999999999-86265897410122212345678987413345156652035566788499983797
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.082 Score=24.84 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|=|+-||||||+++.|+-.+.
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988859999999999873
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.21 E-value=0.066 Score=25.41 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++||+|+|||.|.+.|+..+.
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99977875006999999986336
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.047 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
.+|+||.|+|||||++.|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.12 E-value=0.041 Score=26.74 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999599983999999997
Q 000838 734 TALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~ 752 (1262)
++++|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.052 Score=26.08 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|-|+.||||||+.+.|...+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988899999999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.08 E-value=0.052 Score=26.08 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=16.9
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99983799999789998981
Q 000838 1 MTLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~ 20 (1262)
++.|.||+||||||+.--++
T Consensus 38 ~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998589898899999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.03 E-value=0.086 Score=24.72 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 780999995999839999999978
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|-=-++++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.99 E-value=0.079 Score=24.95 Aligned_cols=69 Identities=6% Similarity=-0.027 Sum_probs=37.0
Q ss_pred HCCCEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-HHCCCEEEECCCEEEEECC
Q ss_conf 5598087872798550-27999999999999856159989999348983599-7300358846980888668
Q 000838 160 VGPALAMFMDEISTGL-DSSTTFQIVNCLRQNIHINSETAVISLLQPAPETY-NLFDDIILLSDGQIVYQGP 229 (1262)
Q Consensus 160 ~~~p~IllLDEpTSgL-Ds~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e~~-~lfD~I~vL~~G~iv~~G~ 229 (1262)
+...+++++||.-.=. +...+..+++.+..... .++.++++...+..+.- ..-|=.--|..|-++...|
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p 165 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 165 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECC
T ss_conf 7621301011265505865778899999998763-1663899548751001343267888861856899788
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.96 E-value=0.084 Score=24.78 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.092 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959998399999999789
Q 000838 733 LTALMGVSGAGKTTLMDVLAGR 754 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~ 754 (1262)
.++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.07 Score=25.25 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9983799999789998981
Q 000838 2 TLLLGPPASGKTTFLLALA 20 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1262)
.+++||.++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.80 E-value=0.065 Score=25.47 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 59808787279855027--------9999999999998561599899993489835
Q 000838 161 GPALAMFMDEISTGLDS--------STTFQIVNCLRQNIHINSETAVISLLQPAPE 208 (1262)
Q Consensus 161 ~~p~IllLDEpTSgLDs--------~s~~~i~~~L~~~~~~~~~tvii~i~q~~~e 208 (1262)
.+|+++++|-. +-+++ .....+++.|+.+++..+ ..|+.++|+..+
T Consensus 146 ~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~-i~vi~~~q~~r~ 199 (277)
T d1cr2a_ 146 LGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLKNP 199 (277)
T ss_dssp TCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC--
T ss_pred CCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCEEECCCCCC
T ss_conf 67625997054-2120346544306778999999999765016-552031035632
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.67 E-value=0.12 Score=23.70 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+-.++++|.+.+|||||+|.|.|+.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.60 E-value=0.063 Score=25.57 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9983799999789998
Q 000838 2 TLLLGPPASGKTTFLL 17 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~ 17 (1262)
++|.|++||||||.+-
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHH
T ss_conf 8999628843899999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.46 E-value=0.062 Score=25.58 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998379999978999
Q 000838 2 TLLLGPPASGKTTFL 16 (1262)
Q Consensus 2 taIlG~sGsGKSTLL 16 (1262)
++|.|++||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.34 E-value=0.14 Score=23.47 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+|.=-+||+|.-.+|||||++.|.+..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.091 Score=24.55 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-+.|+|++|.|||++..-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.085 Score=24.73 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
++.|.|.-||||||||+-+....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.10 E-value=0.071 Score=25.22 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+|.|.|++|+||||+..-++-..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999179999899999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.088 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.1
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999837999997899989818
Q 000838 1 MTLLLGPPASGKTTFLLALAG 21 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G 21 (1262)
++.|.|++|||||++.--++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988998878899999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.63 E-value=0.095 Score=24.42 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999995999839999999978
Q 000838 732 VLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.082 Score=24.84 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998379999978999898189899
Q 000838 1 MTLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
+.++-|+-||||||+.+.|+..+..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899888699999999999971
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.091 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099999599983999999997899
Q 000838 732 VLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 732 ~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
..++|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.29 E-value=0.06 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999839999999978998
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
-+.+.|++|+|||||.+.+++...
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.16 E-value=0.18 Score=22.75 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 80999995999839999999978
Q 000838 731 GVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 40899977997888999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.11 Score=24.13 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99983799999789998981898
Q 000838 1 MTLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+|.+.||+||||||++--++...
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89980577747899999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.00 E-value=0.18 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
..|=|+-|+||||+++.|+..+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.94 E-value=0.14 Score=23.48 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+..+||+|+|||-|-+.||...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 2441899863789999998644
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.91 E-value=0.15 Score=23.19 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78099999599983999999997899
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
|.-.+.++||+|+|||.+.+.|+...
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76699997888624899999999983
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.83 E-value=0.16 Score=23.08 Aligned_cols=23 Identities=52% Similarity=0.757 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+.+||+|+|||-|.+.|+...+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.74 E-value=0.12 Score=23.76 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998379999978999898189
Q 000838 2 TLLLGPPASGKTTFLLALAGK 22 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1262)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.66 E-value=0.12 Score=23.73 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|+||+|.|||++...++.++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.34 E-value=0.18 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.23 E-value=0.12 Score=23.84 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999959998399999
Q 000838 734 TALMGVSGAGKTTLM 748 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl 748 (1262)
+.|.|+.||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.22 E-value=0.19 Score=22.62 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
++++|..|+|||||++-+.....|
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~ 28 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEA 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999998889999988408979
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.06 E-value=0.16 Score=23.00 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 780999995999839999999978
Q 000838 730 PGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 730 ~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
|.--+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.99 E-value=0.14 Score=23.46 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.87 E-value=0.17 Score=22.82 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+|=|+-||||||+++.|+....
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.66 E-value=0.16 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.8
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 80999995999839999999
Q 000838 731 GVLTALMGVSGAGKTTLMDV 750 (1262)
Q Consensus 731 G~~~~i~G~sGsGKsTLl~~ 750 (1262)
+..+.|.||.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.17 E-value=0.13 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999959998399999
Q 000838 734 TALMGVSGAGKTTLM 748 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl 748 (1262)
+.|.|+.||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.93 E-value=0.22 Score=22.18 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
-..++|++|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=86.42 E-value=0.28 Score=21.50 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.2
Q ss_pred CCCCEECCCC
Q ss_conf 9840208899
Q 000838 864 SIIFMDEPTS 873 (1262)
Q Consensus 864 ~il~lDEpts 873 (1262)
+++++||.+-
T Consensus 263 d~lIIDEaSm 272 (359)
T d1w36d1 263 DVLVVDEASM 272 (359)
T ss_dssp SEEEECSGGG
T ss_pred CEEEEHHHHC
T ss_conf 1346533214
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.29 E-value=0.2 Score=22.48 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599983999999997899
Q 000838 734 TALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 734 ~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
..|+|++|.|||++..-|+.+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 7687999988999999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.33 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999839999999978
Q 000838 733 LTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.+.+.||+|+||||+.+.++.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798889998759999999998
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.32 Score=21.14 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9984020889999999999999999999858988999914899
Q 000838 863 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 905 (1262)
Q Consensus 863 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hqp~ 905 (1262)
.+++++||.-. |+..++..+.+.+.+-. .+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCC
T ss_conf 87999978110-89999999999985689-8869999738856
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.68 E-value=0.23 Score=22.06 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=8.6
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998379999978999
Q 000838 2 TLLLGPPASGKTTFL 16 (1262)
Q Consensus 2 taIlG~sGsGKSTLL 16 (1262)
.+..|-||.|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999704779856023
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.61 E-value=0.18 Score=22.77 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599983999999997899
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.58 E-value=0.23 Score=22.05 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
+++-|+=||||||+.+.++.-+
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9996687765889999987642
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.57 E-value=0.19 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=24.5
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 079995780999995999839999999978
Q 000838 724 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG 753 (1262)
Q Consensus 724 vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g 753 (1262)
.=..+-.|+..+|.|++|+|||+|+.-++.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 346766787787656888885899999997
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.49 E-value=0.2 Score=22.46 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99837999997899989818989
Q 000838 2 TLLLGPPASGKTTFLLALAGKLD 24 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1262)
.+++|++|.|||++..-|+.+..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.25 E-value=0.21 Score=22.26 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 2468888878989999999999996399984020889999999999999999999858988999914
Q 000838 836 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 902 (1262)
Q Consensus 836 ~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 902 (1262)
++..|+.-.+++.-..-+ -+.+-.+++. .+..|+-+.|...+....+ .+..+++.+.
T Consensus 100 liDtPGh~dF~~ev~~al-----~~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viN 156 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAAL-----RVTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVIN 156 (341)
T ss_dssp EECCCCCCSSCHHHHHHH-----HTCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEE
T ss_pred EECCCCCHHHHHHHHHHH-----HHCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEE
T ss_conf 973787388999999887-----5237249998-6566820469999999987----6998699987
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.25 E-value=0.23 Score=22.04 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=7.3
Q ss_pred EEEECCCCCCHHHH
Q ss_conf 99837999997899
Q 000838 2 TLLLGPPASGKTTF 15 (1262)
Q Consensus 2 taIlG~sGsGKSTL 15 (1262)
++..|-||.|||||
T Consensus 17 alffGLSGTGKTTL 30 (318)
T d1j3ba1 17 AVFFGLSGTGKTTL 30 (318)
T ss_dssp EEEEECTTSCHHHH
T ss_pred EEEECCCCCCCCCC
T ss_conf 99973687981422
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=0.26 Score=21.69 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9983799999789998981898
Q 000838 2 TLLLGPPASGKTTFLLALAGKL 23 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1262)
..|+|++|+|||||+..++...
T Consensus 46 ~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 46 GLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 5686799988789999999977
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.96 E-value=0.2 Score=22.45 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998379999978999898189899
Q 000838 2 TLLLGPPASGKTTFLLALAGKLDS 25 (1262)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1262)
.+|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.81 E-value=0.2 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999578099999599983999999997
Q 000838 726 GAFRPGVLTALMGVSGAGKTTLMDVLA 752 (1262)
Q Consensus 726 ~~~~~G~~~~i~G~sGsGKsTLl~~l~ 752 (1262)
..+-.|+..+|.|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 454677667600677888579999977
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.55 E-value=0.26 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999839999999978998
Q 000838 733 LTALMGVSGAGKTTLMDVLAGRKT 756 (1262)
Q Consensus 733 ~~~i~G~sGsGKsTLl~~l~g~~~ 756 (1262)
.+.|=|+-|+||||+++.|+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999988877889999999999873
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.34 E-value=0.34 Score=20.99 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998379999978999
Q 000838 2 TLLLGPPASGKTTFL 16 (1262)
Q Consensus 2 taIlG~sGsGKSTLL 16 (1262)
++..|-||.|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCCCCCE
T ss_conf 999736778812051
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=82.22 E-value=0.61 Score=19.38 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=8.3
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 8999898189899
Q 000838 13 TTFLLALAGKLDS 25 (1262)
Q Consensus 13 STLL~~L~G~~~~ 25 (1262)
.++|+.|-.|+..
T Consensus 14 ~~vl~~L~~Ry~~ 26 (684)
T d1lkxa_ 14 NAFIENLTMRHKS 26 (684)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999858
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.73 E-value=0.61 Score=19.39 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578099999599983999999997899
Q 000838 729 RPGVLTALMGVSGAGKTTLMDVLAGRK 755 (1262)
Q Consensus 729 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 755 (1262)
+.-.++-+.||.++|||+++++|....
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 761799998589887789999999983
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=80.93 E-value=0.67 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 8999898189899
Q 000838 13 TTFLLALAGKLDS 25 (1262)
Q Consensus 13 STLL~~L~G~~~~ 25 (1262)
+++|+.|-.|+..
T Consensus 19 ~~vl~~L~~Ry~~ 31 (710)
T d1br2a2 19 ASVLHNLRERYFS 31 (710)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999868
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.02 E-value=0.75 Score=18.82 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=4.2
Q ss_pred EEEEEECCCCC
Q ss_conf 08787279855
Q 000838 164 LAMFMDEISTG 174 (1262)
Q Consensus 164 ~IllLDEpTSg 174 (1262)
.|++.=|.-||
T Consensus 127 sIiisGeSGaG 137 (712)
T d1d0xa2 127 SLLITGESGAG 137 (712)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEECCCCCC
T ss_conf 69996799888
|