Citrus Sinensis ID: 000845
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYS2 | 1453 | ABC transporter C family | yes | no | 0.975 | 0.842 | 0.580 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.952 | 0.789 | 0.411 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.945 | 0.810 | 0.426 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.975 | 0.808 | 0.403 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.960 | 0.800 | 0.406 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.970 | 0.830 | 0.394 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.961 | 0.808 | 0.387 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.784 | 0.935 | 0.425 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.945 | 0.771 | 0.375 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.945 | 0.782 | 0.387 | 0.0 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1500 bits (3883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 747/1286 (58%), Positives = 944/1286 (73%), Gaps = 62/1286 (4%)
Query: 17 KKIDLDEQNDA-LYSPLRREEIDA-NEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGK 74
K DE ++ LY PL + + +E D + V+ F KAGL ++FWWL+ L+K+G
Sbjct: 170 KGYRFDESGESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGN 229
Query: 75 DKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKR---PSAHPSILRALISCHWKSILF 131
K LE+ D+P+LR +RA TCYSLF E L + QKR S PSIL+ + C W+ +L
Sbjct: 230 VKDLEEEDIPELRKEERAETCYSLFEENLIE--QKRRLGSSCQPSILKVTVLCVWRELLT 287
Query: 132 SGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQ 191
SGFFA +K++++SAGPL L AFI AEG F+YE LA+ LF K +ESL+ R W+F+
Sbjct: 288 SGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFR 347
Query: 192 SRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWST 251
R+ GL++RS L AAI+ KQLRL+N+++++H+ +I+NY TVDAYRIGEFP+WFHQ+W+T
Sbjct: 348 CRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTT 407
Query: 252 SLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITE 311
S QL IA+ ++++SVG+AT + L V+ILTVL N+P+AKLQ+K+Q MT+Q++RLKA E
Sbjct: 408 SFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNE 467
Query: 312 VLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLT 371
LVNMKVLKLYAW+S+FK VIEKLR+ E LK +Q++K Y VLFWSSP+ + AAT T
Sbjct: 468 SLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFAT 527
Query: 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431
CYFL IPL SNVFTF+ATLR++Q+P+R++PDV G I+AKV+ RIA FLEAPELQ +
Sbjct: 528 CYFLDIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGE 587
Query: 432 MQQVCSRAELEHSIFIKSADLSWEAD-LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
++ +++I IKSA SWE P LRN++LEVK EK A+CGEVG+GKSTLL
Sbjct: 588 RRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLL 647
Query: 491 AAILGELPRLQGM----------------------------------------------- 503
AAILGE P + G
Sbjct: 648 AAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDK 707
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
DL++LP GD T+IGERGVNLSGGQKQRIQLARALYQD DIYLLDDPFSA+DA TA LF
Sbjct: 708 DLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQ 767
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHK 623
EYVM AL+ K VLLVTHQVDFLPAFDS+LL+S GEI +A TY LL S++FQDLVNAH+
Sbjct: 768 EYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHR 827
Query: 624 ETMGPETFGEHVSSKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSH 683
ET G E + + E+ +V P+ +LIK+EERE GDTGL+PYI Y++
Sbjct: 828 ETAGSERVVAVENPTKPVKEINRVISSQSKVLKPS-RLIKQEEREKGDTGLRPYIQYMNQ 886
Query: 684 KKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTR 743
KG+++F +++ A + F V QILQ+ W+A + + +S LKL++VY IG+ + L+ R
Sbjct: 887 NKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVR 946
Query: 744 SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803
S VV + +++S S+F +L++SLFRAPM+FYDSTP+GRILSRVSSDLSI+DLD+
Sbjct: 947 SVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIF 1006
Query: 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863
V +++ + VL +TWQVL V VPM+YL LQ YYF TAKELMRINGT S +A+
Sbjct: 1007 VVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVAN 1066
Query: 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT 923
HLAE+VAGA+TIRAF EERFF K+L LID AS FFHSF A EWLIQRLET+SAIVLA+
Sbjct: 1067 HLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLAS 1126
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPS 983
+A C LL G +G+ GMALS+GLSLN LVYSV NQC + N I+SVERLNQY +
Sbjct: 1127 TAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTP 1186
Query: 984 EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
EAPE++++ P +WP TG+VEI DLQIRYR +PLVL+GI+CTFEGGHKIG+VGRTGSG
Sbjct: 1187 EAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSG 1246
Query: 1044 KTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS 1103
KTTLISALFRLVEP GGKI++DG+DI+ IG++DLRS GIIPQDPTLF+G+VR+NLDPL
Sbjct: 1247 KTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLC 1306
Query: 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163
Q +D EIWE VL KCQL+EV+QEK+ GLDSLVV+DG+NWSMGQRQL LGR VLR
Sbjct: 1307 QHSDAEIWE------VLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLR 1360
Query: 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
R ++LVLDEATASIDNATD ILQ TIRREFA+CTVITVAHRI TVMDC MVLS+SDG++V
Sbjct: 1361 RSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIV 1420
Query: 1224 EYDEPKKLLRRQDSLFAQLVKEYWSH 1249
EYDEP KL++ ++SLF +LVKEYWSH
Sbjct: 1421 EYDEPMKLMKDENSLFGKLVKEYWSH 1446
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/1289 (41%), Positives = 754/1289 (58%), Gaps = 94/1289 (7%)
Query: 49 VTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQ 108
VTP+ AGL+ IT WLDPL+ G + LE D+P L DRA + Y +
Sbjct: 227 VTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKS 286
Query: 109 KRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIY 168
+ PS PS+ RA++ WK + FA + + GP + F+ G+ IF +E Y
Sbjct: 287 ENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGY 346
Query: 169 SLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIV 228
LA F K +E++ R W+ + G+ +RS+L A + K L+LS+ AK HTSG+IV
Sbjct: 347 VLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIV 406
Query: 229 NYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLA 288
NY+ VD RIG++ ++ H IW +Q+ +A+ ++Y SVG+A +ATL+ I+++L PLA
Sbjct: 407 NYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLA 466
Query: 289 KLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQL 348
K+Q YQ+ MTA+++R++ +E L NM+VLKL AW+ ++ +E++R EEYGWL+
Sbjct: 467 KVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALY 526
Query: 349 QKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAF 408
+ + +FWSSPI + A T T FLG L V + LAT RILQEP+R PD+
Sbjct: 527 SQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSMM 586
Query: 409 IEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINL 468
+ KVSLDRI+ FL+ ELQ D V R +I IK W+ PTL I +
Sbjct: 587 AQTKVSLDRISGFLQEEELQE-DATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQM 645
Query: 469 EVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------------- 502
+V+ + A+CG VG+GKS+ ++ ILGE+P++ G
Sbjct: 646 KVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENI 705
Query: 503 ---------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDR 541
D+++ GD T IGERG+NLSGGQKQR+QLARALYQD
Sbjct: 706 LFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDA 765
Query: 542 DIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQ 601
DIYLLDDPFSALDA T LF +Y++ AL++KTV+ VTHQV+FLPA D IL++ G IIQ
Sbjct: 766 DIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQ 825
Query: 602 AATYDHLLVTSQEFQDLVNAHKETMGPETFGEHVSSKEDEN------------------E 643
+ YD LL +F+ LV+AH E + S DEN +
Sbjct: 826 SGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFEND 885
Query: 644 VKKVEDEGHNNTSPAD-----------------QLIKKEERETGDTGLKPYIDYLSHKKG 686
++ + E S +D QL+++EER G +K Y+ Y+
Sbjct: 886 IETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYK 945
Query: 687 FLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLK-----LVIVYSGIGIGMMFLLL 741
L A F QI + W+A P T K L+IVY+ + G +
Sbjct: 946 GALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIF 1005
Query: 742 TRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801
R+ LV GL A++ +F ++ S+FRAPM+F+DSTP GRIL+RVS D S++DLD+ +
Sbjct: 1006 VRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065
Query: 802 TIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLL 861
TT+ + V+ +TWQV L++VP+ +Q YY A+++EL+RI + S +
Sbjct: 1066 GGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPI 1125
Query: 862 ASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVL 921
E++AGA TIR F E+RF +NL L+D + FF S A EWL R+E LS +V
Sbjct: 1126 IHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVF 1185
Query: 922 ATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI 981
A + G G+A+++GL+LN L + + C + N I+S+ER+ QY +I
Sbjct: 1186 AFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQI 1245
Query: 982 PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
EAP +++ P WP TG +E+ D+++RY N P VL G++C F GG KIG+VGRTG
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTG 1305
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP 1101
SGK+TLI ALFRL+EPT GKI ID +DI+ IGL+DLRS LGIIPQDPTLF G++R NLDP
Sbjct: 1306 SGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDP 1365
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
L + +D +IWE L+K QL +V++ K LDS V+++G NWS+GQRQL+ LGR +
Sbjct: 1366 LEEHSDDKIWE------ALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRAL 1419
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
L++ +ILVLDEATAS+D ATD+++Q IR EF +CTV T+AHRI TV+D ++VL +SDG+
Sbjct: 1420 LKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGR 1479
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
+ E+D P +LL + S+F +LV EY S +
Sbjct: 1480 VAEFDTPARLLEDKSSMFLKLVTEYSSRS 1508
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/1264 (42%), Positives = 767/1264 (60%), Gaps = 77/1264 (6%)
Query: 55 AGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDW--NQKRPS 112
AG ++F W++PL+ G K L D+P + D A Y F + + ++
Sbjct: 206 AGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESSTK 265
Query: 113 AHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEII-FKYEIYSLA 171
+ RA++ ++K +F FA ++ ++ + PL L F+ A + + ++LA
Sbjct: 266 ERNLVFRAVVKVYFKENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRNGFFNLA 325
Query: 172 ISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYV 231
L ++K VESL RHW+F SR +G++IRS+L A KQL+LS+ + H+SG+IVNY+
Sbjct: 326 -CLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEIVNYI 384
Query: 232 TVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQ 291
VDAYR+GEF +WFH WS SLQL ++ V++ VG LI+++L L N P AK+
Sbjct: 385 AVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPFAKML 444
Query: 292 HKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKG 351
Q FM AQ+KRL++ +E+L +MKV+KL +W+ FK IE R +E+ WL QL K
Sbjct: 445 QNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQLTKA 504
Query: 352 YYMVLFWSSPILIGAATLLTCYFL-GIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIE 410
+ L+W SP ++ + L C L PLN S +FT LATLR++ EP++++PD A I+
Sbjct: 505 FGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAISAIIQ 564
Query: 411 AKVSLDRIANFLEAPELQNSDMQQVCSRAELEHS---IFIKSADLSWEADLLNPTLRNIN 467
VS R+ NFL EL+ +++ R+ L+ S + I+ + WE + PTLRNI+
Sbjct: 565 GNVSFQRLNNFLLDDELKMDEIE----RSGLDASGTAVDIQVGNFGWEPETKIPTLRNIH 620
Query: 468 LEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------------------------ 503
LE+K +K A+CG VGAGKS+LL A+LGE+P++ G
Sbjct: 621 LEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDN 680
Query: 504 -----------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQD 540
D+ GDLT+IG+RG+NLSGGQKQRIQLARA+Y D
Sbjct: 681 ILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYAD 740
Query: 541 RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEII 600
D+YLLDDPFSA+DA TA LF + V +L +KTV+LVTHQV+FL D IL++ G I
Sbjct: 741 ADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTIT 800
Query: 601 QAATYDHLLVTSQEFQDLVNAHKE--TMGPETFGEHVSSKEDENEVKKVEDEGHNNTS-- 656
Q+ Y+ LL+ FQ LVNAH + T+ P E + E + +++ +
Sbjct: 801 QSGKYEELLMMGTAFQQLVNAHNDAVTVLPLASNESLGDLRKEGKDREIRNMTVVEKIEE 860
Query: 657 -------PADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSL 709
P QL ++EE+E+G G+KP++DY+ +G+ S + F+V Q +
Sbjct: 861 EIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGFVVFQAASTY 920
Query: 710 WIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA 769
W+A I I+ L+ VYS I + R+ +LGL+AS++ F +++F+A
Sbjct: 921 WLAFAIGIPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFSGFTNAVFKA 980
Query: 770 PMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVI 829
PM F+DSTPVGRIL+R SSDL+++D D+ V + + + +++ +TWQV+++
Sbjct: 981 PMLFFDSTPVGRILTRASSDLNVLDYDVPFAFIFVVAPAVELTAALLIMTYVTWQVIIIA 1040
Query: 830 VPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNL 889
+ + V+Q+YY A+A+EL+RINGT + + ++ AET G +TIRAF ERFF L
Sbjct: 1041 LLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKNYL 1100
Query: 890 DLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGL 949
+L+DA A FF S A EW+I R+ETL + L T AL L+ KG+ G G++LS+ L
Sbjct: 1101 NLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPGLVGLSLSYAL 1160
Query: 950 SLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDL 1009
+L V+ C + N I+SVER+ QYM IP E P ++ P WP G + + +L
Sbjct: 1161 TLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDKRPPSSWPSNGTIHLQEL 1220
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
+IRYRPNAPLVL+GI+CTF G ++GVVGRTGSGK+TLISALFRLVEP G I+IDG+DI
Sbjct: 1221 KIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALFRLVEPASGCILIDGIDI 1280
Query: 1070 TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVI 1129
+ IGL DLR L IIPQ+PTLF G +R NLDPL ++D EIW + LEKCQL+ I
Sbjct: 1281 SKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIW------KALEKCQLKTTI 1334
Query: 1130 QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
LDS V +G NWS+GQRQL LGRV+L+R +ILVLDEATASID+ATD+I+Q I
Sbjct: 1335 SNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRII 1394
Query: 1190 RREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSH 1249
R EFA+CTVITVAHR+ TV+D +MV+ +S G LVEY+EP KL+ DS F++LV EYW+
Sbjct: 1395 REEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLM-ETDSYFSKLVAEYWAS 1453
Query: 1250 AEKH 1253
+
Sbjct: 1454 CRGN 1457
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/1315 (40%), Positives = 781/1315 (59%), Gaps = 91/1315 (6%)
Query: 18 KIDLDEQNDALYSPLRR---------EEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDP 68
K D N L PL + ++ N+ + G+ TP+ +AG+L +TF W+ P
Sbjct: 204 KKDRSNSNGVLEEPLLNGGDSRVGGDDSVELNKTNGSGE-ATPYSRAGILSLLTFSWMSP 262
Query: 69 LMKKGKDKVLEDIDVPQLRLADRATTCYSLF--IEELNDWNQKRPSAHPSILRAL-ISCH 125
L+ G K L+ DVPQL D F + E D ++ +++AL +
Sbjct: 263 LIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGGERSGVTTFKLIKALYFTAQ 322
Query: 126 WKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAG 185
W+ IL + FFA I ++ GP + F+ G + +E Y L I+ F K VE L+
Sbjct: 323 WE-ILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEGYVLVITFFAAKIVECLSQ 381
Query: 186 RHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWF 245
RHWFF+ + G+++RS+L A I K L LS +K TSG+I+N++TVDA RIG F ++
Sbjct: 382 RHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEIINFMTVDAERIGNFSWYM 441
Query: 246 HQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKR 305
H W LQ+ +A+ ++Y ++GLA+IA L+ I+ +L N P ++Q ++QE M A++ R
Sbjct: 442 HDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSR 501
Query: 306 LKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIG 365
+K+ +E+L NM++LKL W+ F + I LR E GWLK +FW +P L+
Sbjct: 502 MKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVS 561
Query: 366 AATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAP 425
+T C LGIPL + + LAT RILQEPI LPD ++ KVSLDR+A++L
Sbjct: 562 VSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLD 621
Query: 426 ELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAG 485
LQ D+ + + + ++ + ++ LSW+ NPTL++IN +V P K A+CG VG+G
Sbjct: 622 NLQ-PDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSG 680
Query: 486 KSTLLAAILGELPRLQG------------------------------------------- 502
KS+LL+++LGE+P++ G
Sbjct: 681 KSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEA 740
Query: 503 ----MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTA 558
DL++L FGD T IGERG+NLSGGQKQRIQ+ARALYQD DIYL DDPFSA+DA T
Sbjct: 741 CSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTG 800
Query: 559 KFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
LF E ++G L K+V+ VTHQV+FLPA D IL++ G I QA Y+ +L + +F +L
Sbjct: 801 SHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMEL 860
Query: 619 VNAHKETMG------------PETFG-EHVSSKE----DEN-EVKKVEDEGHNNTSPADQ 660
+ AH+E + G E+V K+ DE E + ++++ + P Q
Sbjct: 861 IGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESVEPQRQ 920
Query: 661 LIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTS- 719
+I++EERE G L Y Y++ G ++F + QI + W+A P +
Sbjct: 921 IIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSED 980
Query: 720 ----ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYD 775
+ L+IVY + G +L R+ L+V G + + +F+K+ +FR+PM+F+D
Sbjct: 981 VQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFD 1040
Query: 776 STPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYL 835
STP GRI+SR S+D S +DL+L + T + +I V+ ++W V LV +P++
Sbjct: 1041 STPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAA 1100
Query: 836 IIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAY 895
I Q YY A A+EL R+ G + L H +ET++GA TIR+F E RF + N+ L D Y
Sbjct: 1101 SIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGY 1160
Query: 896 ASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFL 955
+ F++ A EWL RL+ LS++ S + + G G+A+++GLSLN
Sbjct: 1161 SRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYGLSLNTLQ 1220
Query: 956 VYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRP 1015
+ + C + N I+SVER+ QY +PSE P +++ N P WP G+VEI DLQ+RY P
Sbjct: 1221 AWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAP 1280
Query: 1016 NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY 1075
+ PLVLRGITCTF+GG + G+VGRTGSGK+TLI LFR+VEP+ G+I IDG++I TIGL+
Sbjct: 1281 HMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGVNILTIGLH 1340
Query: 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
DLR L IIPQDPT+F G++R NLDPL ++TD +IWE L+KCQL + +++K++
Sbjct: 1341 DLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWE------ALDKCQLGDEVRKKEQK 1394
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195
LDS V ++G NWSMGQRQL+ LGRV+L+R +ILVLDEATAS+D ATD+++Q T+R F++
Sbjct: 1395 LDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSD 1454
Query: 1196 CTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
CTVIT+AHRI++V+D +MVL +S+G + EYD P +LL + S F++LV EY S +
Sbjct: 1455 CTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRS 1509
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/1286 (40%), Positives = 770/1286 (59%), Gaps = 80/1286 (6%)
Query: 31 PLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLAD 90
PL + D +P+ A L ++ITF W++PL G + LE DVP + + D
Sbjct: 216 PLLLGDQTEQNKKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKD 275
Query: 91 RATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFL 150
A C F ++L +K + +++ W+ + FA++ + GP +
Sbjct: 276 SARFCSHAFDQKLKTTKEKEGPGNAFFYNSVLRYVWRKAAINAVFAVVNASTAYIGPYLI 335
Query: 151 KAFIS-AAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISS 209
F+ +E + Y LA+ K VE++ R W F +R GL++R++L + I
Sbjct: 336 NDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQ 395
Query: 210 KQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLA 269
K L LS+ ++ HTSG+I+NY++VD RI +F ++ + IW +Q+ A+ ++ +GL
Sbjct: 396 KGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLG 455
Query: 270 TIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFK 329
+A L+ ++ + N PL +LQ YQ M A++ R+KA +E+L NMK+LKL AWD+ F
Sbjct: 456 ALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFL 515
Query: 330 NVIEKLRSEEYGWL-KVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFL 388
N ++ LR +EY L K L+LQ + + W +P LI T +TC +G+ L V + L
Sbjct: 516 NKVKTLRKKEYDCLWKSLRLQ-AFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSAL 574
Query: 389 ATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIK 448
AT ++LQ PI LPD+ A +++KVS DRIA++L+ E Q D + CS+ E S+ I+
Sbjct: 575 ATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQK-DAVEYCSKDHTELSVEIE 633
Query: 449 SADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----- 503
+ SWE + PTL +I L+VK K A+CG VG+GKS+LL++ILGE+ +L+G
Sbjct: 634 NGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSG 693
Query: 504 ------------------------------------------DLKMLPFGDLTQIGERGV 521
D ++ GDLT+IGERG+
Sbjct: 694 KQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGI 753
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
N+SGGQKQRIQ+ARA+YQ+ DIYLLDDPFSA+DA T + LF + +MG L KTVL VTHQ
Sbjct: 754 NMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQ 813
Query: 582 VDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETM--------GPETFGE 633
V+FLPA D IL++ G ++QA ++ LL + F+ LV AH E + F E
Sbjct: 814 VEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALDSILSIEKSSRNFKE 873
Query: 634 HVSSKEDENEVKKV----EDEGHN----NTSPADQLIKKEERETGDTGLKPYIDYLSHKK 685
SK+D + + D HN N +L++ EE E G G + Y+ YL+ K
Sbjct: 874 --GSKDDTASIAESLQTHCDSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVK 931
Query: 686 GFLYFTLSTFAYLIFLVAQILQSLWIATYIPST--SISRL---KLVIVYSGIGIGMMFLL 740
G L A F + QI + W+A P T SI +L ++++VY+ + G +
Sbjct: 932 GGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCV 991
Query: 741 LTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIK 800
L R+ LV GL +E+ F +++ S+FRAPM+F+DSTP GRIL+R S+D S++DL++++K
Sbjct: 992 LARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRASTDQSVLDLEMAVK 1051
Query: 801 STIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSL 860
+ + ++ T V+ + WQV ++ +P+ + Q YY TA+EL R++G +
Sbjct: 1052 LGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAP 1111
Query: 861 LASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIV 920
+ H AE++AGA TIRAF +RF + NL LID+++ +FH +A EWL RL LS V
Sbjct: 1112 ILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFV 1171
Query: 921 LATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR 980
A S + L +G G+ +++GLSLN + N C N ++SVER+ QY +
Sbjct: 1172 FAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSK 1231
Query: 981 IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRT 1040
IPSEAP ++ + P +WP G + DLQ+RY + P VL+ ITC F GG KIGVVGRT
Sbjct: 1232 IPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRT 1291
Query: 1041 GSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD 1100
GSGK+TLI ALFR+VEP+ G I+ID +DIT IGL+DLRS LGIIPQDP LF G++R NLD
Sbjct: 1292 GSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLD 1351
Query: 1101 PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160
PL+Q+TD EIWE ++KCQL +VI+ K E LD+ VV++G NWS+GQRQL+ LGRV
Sbjct: 1352 PLAQYTDHEIWE------AIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRV 1405
Query: 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDG 1220
+L++ ILVLDEATAS+D+ATD ++Q I +EF + TV+T+AHRI TV++ ++VL +SDG
Sbjct: 1406 LLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDG 1465
Query: 1221 KLVEYDEPKKLLRRQDSLFAQLVKEY 1246
++ E+D P KLL+R+DS F++L+KEY
Sbjct: 1466 RIAEFDSPAKLLQREDSFFSKLIKEY 1491
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/1288 (39%), Positives = 748/1288 (58%), Gaps = 70/1288 (5%)
Query: 23 EQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDID 82
E+ D L PL + + E D+ + PF KAG+L +++F W+ PL+ G +K+++ D
Sbjct: 184 ERIDLLKEPL----LSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKD 239
Query: 83 VPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVIS 142
VPQL +D + + +F +L + +R +++AL W+ I+ S A + +S
Sbjct: 240 VPQLDRSDTTESLFWIFRSKLEWDDGERRITTFKLIKALFLSVWRDIVLSALLAFVYTVS 299
Query: 143 ISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSS 202
P + F+ G +K + Y L + F+ K VE R WFF+ + GL +RS
Sbjct: 300 CYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSV 359
Query: 203 LCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVV 262
L + I K L L +K HTSG+I+N + VDA RI F ++ H W LQ+ +A+ ++
Sbjct: 360 LVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWIL 419
Query: 263 YYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLY 322
Y S+GL +IA IL +L N P AKL+ K+Q + M +++ R+K +EVL+NMK+LKL
Sbjct: 420 YKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQ 479
Query: 323 AWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPS 382
W+ F + I +LR E GWLK + W++P I A C L IPL
Sbjct: 480 GWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLLKIPLESG 539
Query: 383 NVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELE 442
+ LAT RILQ PI LP+ ++ KVSL+RIA+FL +LQ + ++ S + E
Sbjct: 540 KILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSS-E 598
Query: 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
++ I + SW+ PTLR++N +V AICG VG+GKS+LL++ILGE+P++ G
Sbjct: 599 MAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISG 658
Query: 503 -----------------------------------------------MDLKMLPFGDLTQ 515
DL++LPF D T
Sbjct: 659 NLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTV 718
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTV 575
IGERG+NLSGGQKQRIQ+ARALYQD DIYL DDPFSA+DA T LF E ++G L KTV
Sbjct: 719 IGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTV 778
Query: 576 LLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGP----ET- 630
+ VTHQV+FLP D IL++ G+I QA Y +L + +F +LV AH E + ET
Sbjct: 779 IYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEALATIDSCETG 838
Query: 631 FGEHVSSKEDENEV--KKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFL 688
+ S+ + ENEV K + E ++ P+ QL+++EERE G G Y Y++ G
Sbjct: 839 YASEKSTTDKENEVLHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMALAYGGA 898
Query: 689 YFTLSTFAYLIFLVAQILQSLWIATYIPSTS-----ISRLKLVIVYSGIGIGMMFLLLTR 743
L ++F + I + W+ P + +S L++VY + + F +L R
Sbjct: 899 VIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIR 958
Query: 744 SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803
+ LV G + + +F ++ +FRA M+F+D+TP+GRIL+R S+D S+ DL L +
Sbjct: 959 ALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRLPGQFAY 1018
Query: 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863
+ ++ V+ + WQVL+V +P++ + YY + A+EL R+ G S +
Sbjct: 1019 VAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVH 1078
Query: 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT 923
H +ET++G TIR+F E RF + L D Y+ FHS A EWL RLE LS A+
Sbjct: 1079 HFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFAS 1138
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPS 983
S + +G G+A+++ L+LN + C + N ++SVER+ QY IPS
Sbjct: 1139 SLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPS 1198
Query: 984 EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
E P +++ P WP G++ I +LQ+RY P+ P+VL G+TCTF GG K G+VGRTG G
Sbjct: 1199 EPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCG 1258
Query: 1044 KTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS 1103
K+TLI LFR+VEP G+I IDG++I +IGL+DLRS L IIPQDPT+F G++R NLDPL
Sbjct: 1259 KSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLE 1318
Query: 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163
++TD +IWE L+ CQL + +++K+ LDS V ++G NWS+GQRQL+ LGRV+L+
Sbjct: 1319 EYTDDQIWE------ALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLK 1372
Query: 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
R ++LVLDEATASID ATD+++Q T+R FA+CTVIT+AHRI++V+D +MVL + G +
Sbjct: 1373 RSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIK 1432
Query: 1224 EYDEPKKLLRRQDSLFAQLVKEYWSHAE 1251
E+D P +LL + SLF++LV EY + +E
Sbjct: 1433 EHDSPARLLEDRSSLFSKLVAEYTTSSE 1460
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1279 (38%), Positives = 747/1279 (58%), Gaps = 72/1279 (5%)
Query: 36 EIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTC 95
++D EDD+ VTPF AG L ++F W+ PL+ G +K+++ DVPQ+ +DRA
Sbjct: 219 QLDKAEDDE---VVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKL 275
Query: 96 YSLFIEELNDWN--QKRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAF 153
+ +F +L +W+ ++R + + +++AL W+ IL S FA + +S P + F
Sbjct: 276 FWIFRSKL-EWDDGERRITTY-KLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTF 333
Query: 154 ISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLR 213
+ G+ + + L + F+ K VE A R+W+F+ + G+ +RS L + I K L
Sbjct: 334 VQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLT 393
Query: 214 LSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIAT 273
L +K HTSG+I+N +TVDA RI F ++ H W LQ+ +A++++Y S+GL +IA
Sbjct: 394 LPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAA 453
Query: 274 LIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIE 333
L +LGN PLAKL+ K+Q M +++ R+K +E L+NM++LKL W+ F + I
Sbjct: 454 FAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKIL 513
Query: 334 KLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRI 393
LR E GWLK + W++P + A C L IPL + LAT RI
Sbjct: 514 DLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRI 573
Query: 394 LQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLS 453
LQ PI LPD ++ KVSLDRIA FL +LQ M+++ S + + + + + S
Sbjct: 574 LQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSS-KMDVEVSNGAFS 632
Query: 454 WEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------- 502
W+ PTL++I ++ AICG VG+GKS+LL++ILGE+P++ G
Sbjct: 633 WDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYI 692
Query: 503 ------------------------------------MDLKMLPFGDLTQIGERGVNLSGG 526
DL++ PF D T IGERG+NLSGG
Sbjct: 693 AQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGG 752
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586
QKQRIQ+ARALYQD DIYL DDPFSA+DA T LF E ++G L KTV+ VTHQ++FLP
Sbjct: 753 QKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLP 812
Query: 587 AFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGP-----ETFGEHVSSKEDE 641
D IL++ G I QA Y+ +L + +F +LV AH + + + S+ E
Sbjct: 813 EADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKE 872
Query: 642 NEVKKVEDEGHNN-TSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIF 700
++V E++ + SP QL+++EERE G G Y Y+ G + ++F
Sbjct: 873 SKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILF 932
Query: 701 LVAQILQSLWIATYIPSTS-----ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEAS 755
V I + W+A P + +S L++VY + F +L R+ L G + +
Sbjct: 933 QVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIA 992
Query: 756 ESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTF 815
+F ++ +FRA M+F+D+TP+GRIL+R S+D S +DL L + + + ++
Sbjct: 993 TELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNILGII 1052
Query: 816 VVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTI 875
V+G + WQVL+V +P+I + YY + A+EL R++G S L H +ET++G TI
Sbjct: 1053 GVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTI 1112
Query: 876 RAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGH 935
R+F E RF + L D Y+ FH+ +A EWL RL+ LS + A S + + +G
Sbjct: 1113 RSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGV 1172
Query: 936 KGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPA 995
+ G+A+++ L+LN + C + N ++SVER+ QY+ IPSE +++ P
Sbjct: 1173 INPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRPE 1232
Query: 996 PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV 1055
WP G++ I +LQ+RY P+ P+VLRG+TCTF GG K G+VGRTG GK+TLI LFR+V
Sbjct: 1233 KSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRIV 1292
Query: 1056 EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
EP G+I IDG++I TIGL+DLRS L IIPQ+PT+F G+VR NLDPL ++ D +IWE
Sbjct: 1293 EPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWE--- 1349
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
L+KCQL + I++K+ LDS V ++G NWS+GQRQL+ LGRV+L+R ++L+LDEATA
Sbjct: 1350 ---ALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATA 1406
Query: 1176 SIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235
S+D ATD+++Q T+R+ F+ CTVIT+AHRI++V+D +MVL + G + E+D P +LL +
Sbjct: 1407 SVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDK 1466
Query: 1236 DSLFAQLVKEYWSHAEKHL 1254
S F++LV EY + ++
Sbjct: 1467 SSSFSKLVAEYTASSDSRF 1485
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/1069 (42%), Positives = 660/1069 (61%), Gaps = 84/1069 (7%)
Query: 231 VTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKL 290
++VD RI +F ++ + IW +Q+ A+ ++ +GL +A L+ ++ + N PL +L
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 291 QHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWL-KVLQLQ 349
Q YQ M A++ R+KA +E+L NMK+LKL AWD+ F N ++ LR +EY L K L+LQ
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 350 KGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFI 409
+ + W +P LI T +TC +G+ L V + LAT ++LQ PI LPD+ A +
Sbjct: 121 D-FTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 410 EAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLE 469
++KVS DRIA++L+ E Q D + CS E S+ I++ SWE + PTL +I L+
Sbjct: 180 QSKVSADRIASYLQQSETQK-DAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELK 238
Query: 470 VKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------------------- 503
VK K AICG VG+GKS+L ++ILGE+ +L+G
Sbjct: 239 VKSGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNIL 298
Query: 504 ---------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542
D ++ GDLT+IGERG+N+SGGQKQRIQ+ARA+YQ+ D
Sbjct: 299 FGSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNAD 358
Query: 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQA 602
IYLLDDPFSA+DA T + LF + +MG L KTVL VTHQV+FLPA D IL++ G ++QA
Sbjct: 359 IYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQA 418
Query: 603 ATYDHLLVTSQEFQDLVNAHKETMGPETFGEHVSSKEDENEVKKVEDEGHNNTSPADQLI 662
++ LL + F+ L E ++S++ + E K V+DE
Sbjct: 419 GKFEELLKQNIGFEVLTQCDSE--------HNISTENKKKEAKLVQDE------------ 458
Query: 663 KKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPST--SI 720
E E G G + Y+ YL+ KG L A F + QI + W+A P T SI
Sbjct: 459 ---ETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESI 515
Query: 721 SRL---KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDST 777
+L ++++VY+ + G +L R+ LV GL +E+ F +++ S+FRAPM+++DST
Sbjct: 516 PKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSYFDST 575
Query: 778 PVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLII 837
P GRIL+R S+D S++DL++++K + + ++ T V+ + WQV ++ +P+ +
Sbjct: 576 PTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACV 635
Query: 838 VLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYAS 897
Q YY T +EL R++G + + H AE++AGA TIRAF +RF + NL LID+++
Sbjct: 636 FYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSR 695
Query: 898 SFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVY 957
+FH +A EWL RL LS V A S + L +G G+ +++GLSLN
Sbjct: 696 PWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQAT 755
Query: 958 SVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNA 1017
+ N C N ++SVER+ Q+ +IPSEAP ++ P +WP G + DLQ+RY +
Sbjct: 756 VIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQVRYAEHF 815
Query: 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL 1077
P VL+ ITC F GG KIGVVGRTGSGK+TLI ALFR+VEP+ G I+ID +DIT IGL+DL
Sbjct: 816 PAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVDITKIGLHDL 875
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
RS LGIIPQD LF G++R NLDPL+Q+TD+EIWE L+KCQL +VI+ K E LD
Sbjct: 876 RSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWE------ALDKCQLGDVIRAKDEKLD 929
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCT 1197
+ VV++G NWS+GQRQL+ LGRV+L++ ILVLDEATAS+D+ATD ++Q I +EF + T
Sbjct: 930 ATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRT 989
Query: 1198 VITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
V+T+AHRI TV++ ++VL +SDG++ E+D P KLL+R+DS F++L+KEY
Sbjct: 990 VVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY 1038
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/1307 (37%), Positives = 742/1307 (56%), Gaps = 120/1307 (9%)
Query: 44 DDGDHVTPFDKAGLLRKITFW-WLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEE 102
+ ++V+ + A + K TFW W++PL++KG L VP L RA +LF +
Sbjct: 242 EKSENVSLYASASFISK-TFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESK 300
Query: 103 LNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEII 162
W + + ++ + LI C WK I F+ A+I++ I GP+ +++F+ G+
Sbjct: 301 ---WPKPQENSRNPVRTTLIRCFWKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRS 357
Query: 163 FKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMH 222
+ Y L + L + K VE L+ + F S+ G+ IRS+L A+ K L+L+ +A+ H
Sbjct: 358 SPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNH 417
Query: 223 TSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLI----VMI 278
G IVNY+ VDA ++ + H IW LQ+ A+V++Y ++G + + T+I + +
Sbjct: 418 GVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFV 477
Query: 279 LTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSE 338
+LG K ++YQ + M ++ R+KA E+L M+V+K AW+ +F I K R
Sbjct: 478 FILLGT----KRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREM 533
Query: 339 EYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPI 398
E+GWL +++ WS+P+LI A T T FLG+ L+ VFT +ILQEPI
Sbjct: 534 EFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPI 593
Query: 399 RLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADL 458
R P + +A +SL R+ ++ + EL +++ + ++ IK SW+ +
Sbjct: 594 RTFPQSMISLSQAMISLGRLDAYMMSRELSEETVER-SQGCDGNVAVEIKDGSFSWDDED 652
Query: 459 LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM--------------- 503
P + NIN EVK E AI G VG+GKS+LLA++LGE+ +L G
Sbjct: 653 DEPAIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSW 712
Query: 504 --------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRI 531
D++++ FGD T+IGERG+NLSGGQKQRI
Sbjct: 713 IQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRI 772
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSI 591
QLARA+YQ+ D+YLLDD FSA+DA T +F + V GAL KT+LLVTHQVDFL D I
Sbjct: 773 QLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRI 832
Query: 592 LLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETM------------------------- 626
L++ G I+Q+ YD L+ + +F +LV AH+ +M
Sbjct: 833 LVMRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAANVPMASPITQRS 892
Query: 627 -------GPETFGEHVSSKEDENEV-----------KKVEDE------GHNNTSPADQLI 662
P++ H ++ + V ++ DE G N +LI
Sbjct: 893 ISIESPRQPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSFLGSNIPEDGSRLI 952
Query: 663 KKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS---TS 719
K+EERE G + Y Y + G+ L F + + + + W+A + S
Sbjct: 953 KEEEREVGQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEVS 1012
Query: 720 ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPV 779
+ VY I + L+ R+F V +LGL+ ++ F ++++SL APM+F+D+TP
Sbjct: 1013 FDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPS 1072
Query: 780 GRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVL 839
GRILSR S+D + +D+ + + ++S F+V W + I+P+ +L I
Sbjct: 1073 GRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIWY 1132
Query: 840 QNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSF 899
+ YY A+++EL R++ + + H +E++AG MTIRAF+ + F +N+ ++A
Sbjct: 1133 RGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMD 1192
Query: 900 FHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSV 959
FH+ + EWL RLE + + VL SAL +L G++LS+GLSLN L +++
Sbjct: 1193 FHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWAI 1252
Query: 960 NNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPL 1019
C + N +VSVER+ Q+ IP+EA ++++ P P+WP G + + D+++RYRPN PL
Sbjct: 1253 YLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTPL 1312
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL+G+T +GG KIGVVGRTGSGK+TLI LFRLVEP+GGKIIIDG+DI T+GL+DLRS
Sbjct: 1313 VLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLRS 1372
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
GIIPQ+P LF G+VR N+DP +++D+EIW + LE+CQL++V+ K E LDSL
Sbjct: 1373 RFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIW------KSLERCQLKDVVASKPEKLDSL 1426
Query: 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVI 1199
V +G NWS+GQRQL+ LGRV+L+R +IL LDEATAS+D+ TD+++Q IR +F++CT+I
Sbjct: 1427 VADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTII 1486
Query: 1200 TVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
++AHRI TVMDC+ VL + GK EYD P +LL RQ SLFA LV+EY
Sbjct: 1487 SIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ-SLFAALVQEY 1532
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1283 (38%), Positives = 742/1283 (57%), Gaps = 97/1283 (7%)
Query: 44 DDGDHVTPFDKAGLLRKITFW-WLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEE 102
+ D+V+ + A + K TFW W++PL+ KG L VP L +A LF
Sbjct: 244 EKSDNVSLYASASVFSK-TFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLF--- 299
Query: 103 LNDWNQ-KRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEI 161
+ W + S+HP I L+ C WK ILF+ A++++ + GP+ +++F+ G+
Sbjct: 300 ESSWPKPSENSSHP-IRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKR 358
Query: 162 IFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMM 221
++ Y L + L + K VE L + F S+ G+ IRS+L A+ K L+L+ +A+
Sbjct: 359 SSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQN 418
Query: 222 HTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLI----VM 277
H G IVNY+ VDA ++ + H IW LQ+ +A+V++Y S+G + I +I V
Sbjct: 419 HGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVIGLTGVF 478
Query: 278 ILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRS 337
+ +LG + + YQ + M ++ R+KA E+L M+V+K AW+++F I K R
Sbjct: 479 VFILLGT----QRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRD 534
Query: 338 EEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEP 397
E+GWL +++ WS+P+LI A T T LG+ L+ VFT +ILQEP
Sbjct: 535 MEFGWLSKFLYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEP 594
Query: 398 IRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEAD 457
IR P + +A +SL R+ +++ + EL +++ + ++ ++ SW+ +
Sbjct: 595 IRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALG-CDGNTAVEVRDGSFSWDDE 653
Query: 458 LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------- 503
P L +IN +VK E AI G VG+GKS+LLA++LGE+ R+ G
Sbjct: 654 DNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTS 713
Query: 504 ---------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQR 530
DL+M+ FGD T+IGERG+NLSGGQKQR
Sbjct: 714 WIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQR 773
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDS 590
IQLARA+YQ+ D+YLLDD FSA+DA T +F + V GAL KTVLLVTHQVDFL D
Sbjct: 774 IQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDC 833
Query: 591 ILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETM--------------GPET-FGEHV 635
IL++ G+I+++ YD L+ + +F +LV AH+ +M P T H
Sbjct: 834 ILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHA 893
Query: 636 SSKEDENE---VKKVEDE------GHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKG 686
SS E + + DE G + +LIK+EERETG L Y Y + G
Sbjct: 894 SSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYG 953
Query: 687 FLYFTLSTFAYLIFLVAQILQSLWIA---TYIPSTSISRLKLVIVYSGIGIGMMFLLLTR 743
+ L F L + + + W+A + + S ++ Y I + + L+ R
Sbjct: 954 WWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIR 1013
Query: 744 SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803
S+ V +LGL+ ++ F ++++S+ APM+F+D+TP GRILSR S+D + +D+ + +
Sbjct: 1014 SYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGL 1073
Query: 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863
V ++S F+V W ++P+ +L I +NYY A+++EL R++ + +
Sbjct: 1074 VVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIH 1133
Query: 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT 923
H +E++AG MTIR+F+ +E F +N+ ++ FH+ + EWL RLE + + VL
Sbjct: 1134 HFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCI 1193
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPS 983
SAL LL G++LS+GLSLN L +++ C V N +VSVER+ Q+ IPS
Sbjct: 1194 SALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPS 1253
Query: 984 EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
E+ ++ P +WP G V + DL++RYRPN PLVL+GIT +GG K+GVVGRTGSG
Sbjct: 1254 ESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSG 1313
Query: 1044 KTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS 1103
K+TLI LFRLVEP+GGKIIIDG+DI+T+GL+DLRS GIIPQ+P LF G+VR N+DP
Sbjct: 1314 KSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTE 1373
Query: 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163
Q++D+EIW + LE+CQL++V+ K E LDSLVV +G NWS+GQRQL+ LGRV+L+
Sbjct: 1374 QYSDEEIW------KSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLK 1427
Query: 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
R ++L LDEATAS+D+ TD+++Q IR +FA+CT+I++AHRI TVMD + VL + GK
Sbjct: 1428 RSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAK 1487
Query: 1224 EYDEPKKLLRRQDSLFAQLVKEY 1246
E+D P +LL R SLFA LV+EY
Sbjct: 1488 EFDSPARLLER-PSLFAALVQEY 1509
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | ||||||
| 224053809 | 1446 | multidrug resistance protein ABC transpo | 0.974 | 0.845 | 0.629 | 0.0 | |
| 255545090 | 1481 | multidrug resistance-associated protein | 0.974 | 0.825 | 0.616 | 0.0 | |
| 147838710 | 1480 | hypothetical protein VITISV_018996 [Viti | 0.982 | 0.833 | 0.619 | 0.0 | |
| 359490537 | 1532 | PREDICTED: ABC transporter C family memb | 0.982 | 0.804 | 0.619 | 0.0 | |
| 359473894 | 1491 | PREDICTED: ABC transporter C family memb | 0.982 | 0.826 | 0.619 | 0.0 | |
| 359473896 | 1490 | PREDICTED: ABC transporter C family memb | 0.969 | 0.816 | 0.619 | 0.0 | |
| 224116838 | 1423 | multidrug resistance protein ABC transpo | 0.976 | 0.861 | 0.607 | 0.0 | |
| 356535814 | 1479 | PREDICTED: ABC transporter C family memb | 0.979 | 0.830 | 0.606 | 0.0 | |
| 359473892 | 1480 | PREDICTED: ABC transporter C family memb | 0.973 | 0.825 | 0.613 | 0.0 | |
| 225426056 | 1685 | PREDICTED: ABC transporter C family memb | 0.981 | 0.731 | 0.623 | 0.0 |
| >gi|224053809|ref|XP_002297990.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222845248|gb|EEE82795.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1649 bits (4271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1281 (62%), Positives = 981/1281 (76%), Gaps = 58/1281 (4%)
Query: 20 DLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLE 79
DLD + A Y PL EE +AN + ++TPF AG +++FWWL+PLMKKGK+K+LE
Sbjct: 172 DLDISDGASYEPLPGEEDNANGEISSNHNITPFANAGFFSQMSFWWLNPLMKKGKEKILE 231
Query: 80 DIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIK 139
D D+PQLR ADRA TCY +++ +L Q S S+L +IS HWK IL SGFFALIK
Sbjct: 232 DGDIPQLREADRAKTCYLMYMGQLGTRKQNGLSDSISMLSVIISWHWKEILISGFFALIK 291
Query: 140 VISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKI 199
V+S++ GPLFLKAFI AEG+ F+YE Y L LFL K +ESL+ RHW F++RL G+++
Sbjct: 292 VLSLATGPLFLKAFIDVAEGKAAFEYEGYVLTAGLFLAKVLESLSERHWRFRTRLIGIQV 351
Query: 200 RSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAV 259
RS L AAI KQLRLSNAAKM+H+SG+IV+YVTVDAYRIGEFPFWFHQIW+TS+QLC+A+
Sbjct: 352 RSMLSAAIYQKQLRLSNAAKMIHSSGEIVSYVTVDAYRIGEFPFWFHQIWATSIQLCLAL 411
Query: 260 VVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVL 319
+VYYS+GLAT+A L+ +IL VL + PL KLQHKY M AQ++RLKAITE L NMK+L
Sbjct: 412 AIVYYSIGLATLAALVTVILLVLSSYPLIKLQHKYLTKLMVAQDRRLKAITEALANMKIL 471
Query: 320 KLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPL 379
KLYAW+++FKNV++ LR EE+ W+ + QKGY+MVLFWSSP+++ A T CY LGIP+
Sbjct: 472 KLYAWETHFKNVVDGLRKEEFQWISGVLWQKGYHMVLFWSSPVMVPAITFWACYLLGIPV 531
Query: 380 NPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRA 439
+ S+VFTFLA LRI+QEPIRL+PDV G FIEAKVSLDRI FLEAPEL+NS +Q +
Sbjct: 532 SASSVFTFLACLRIVQEPIRLIPDVAGVFIEAKVSLDRIVKFLEAPELRNSITRQKLNGK 591
Query: 440 ELEHSIFIKSADLSWEADLLN-PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
EL+ SI I++ ++SW D + TLRNIN+ VKP EK AICGEVG+GKSTLLAA+LGE+P
Sbjct: 592 ELDQSILIRTTEISWGIDSSSKATLRNINVVVKPGEKVAICGEVGSGKSTLLAAVLGEVP 651
Query: 499 RLQGM-----------------------------------------------DLKMLPFG 511
++ G+ D+++LPFG
Sbjct: 652 KITGIVHVFGKIAYVSQTAWIQTGTIQENILFGAAMEPIRYQEVLERCSLVKDIEILPFG 711
Query: 512 DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
DLT+IGERGVNLSGGQKQR+QLARALYQD D+YLLDDPFSA+DA TA LF +YV+GALS
Sbjct: 712 DLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATILFNDYVIGALS 771
Query: 572 KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETF 631
KTVLLVTHQ+DFLPAF+SILL+SGGEII++ TY L+ +SQEFQDLVNAHK T G +T
Sbjct: 772 GKTVLLVTHQIDFLPAFNSILLMSGGEIIRSDTYSQLMASSQEFQDLVNAHKNTAGSDTQ 831
Query: 632 GEHVSSKEDEN----EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGF 687
E+ SSK E E++KV + DQLIK+EERE+GDTG KPYI YLS +KGF
Sbjct: 832 VEYDSSKRAETSKTEEIQKVHSKEKLRAPSGDQLIKREERESGDTGFKPYIQYLSQRKGF 891
Query: 688 LYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLV 747
LYF+L+ ++IF+V Q++QS W+A I ++ +SR+ + VYS IG + LL RSF +
Sbjct: 892 LYFSLAIITHIIFIVGQVIQSYWLAANIQNSHVSRVTMFTVYSVIGCSLAVFLLLRSFFI 951
Query: 748 VYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGT 807
V LG ASESIF L++SLFRAPM+FYDSTP+GRILSRVSSDLS+ DL+++ + TIA+G+
Sbjct: 952 VQLGCGASESIFSTLLTSLFRAPMSFYDSTPLGRILSRVSSDLSVTDLEVAFRLTIAIGS 1011
Query: 808 TMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAE 867
TM F VL LTW VL VI+PMIYL IVLQ YYFA+AKELMRINGT S +ASHLAE
Sbjct: 1012 TMNTYFNFAVLAFLTWPVLFVIIPMIYLNIVLQRYYFASAKELMRINGTSKSSVASHLAE 1071
Query: 868 TVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC 927
++AGAMTIRAF E RFF+KNLDLID AS FH+FTA EWLIQRLE L AIVL++S L
Sbjct: 1072 SIAGAMTIRAFGEEARFFSKNLDLIDRNASPCFHTFTADEWLIQRLELLCAIVLSSSTLT 1131
Query: 928 TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987
LLH +G+ GM LS+GLSLN FLV+S QC V N I+SVERL QYM IPSEAPE
Sbjct: 1132 MILLHLTASASGFIGMELSYGLSLNVFLVFSAQYQCSVSNSIISVERLEQYMHIPSEAPE 1191
Query: 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTL 1047
+++ N P+ +WP GKVEI++L++RYRPNAPLVL+GITCT EG HKIG+VGRTGSGKTT
Sbjct: 1192 VIETNRPSTNWPAVGKVEIFNLKVRYRPNAPLVLQGITCTIEGRHKIGIVGRTGSGKTTF 1251
Query: 1048 ISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTD 1107
ISALFRLVEPT GKI+IDGLDI+TIGL+DLRS+ +IPQDPTLF GSVRYNLDPLS+ TD
Sbjct: 1252 ISALFRLVEPTEGKIVIDGLDISTIGLHDLRSHFAVIPQDPTLFVGSVRYNLDPLSKHTD 1311
Query: 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167
QEIWE VLEKC LRE IQEK+EGL+SLV QDG+NWSMGQRQL LGR +L+R +I
Sbjct: 1312 QEIWE------VLEKCHLREAIQEKEEGLNSLVAQDGSNWSMGQRQLFCLGRALLKRSRI 1365
Query: 1168 LVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDE 1227
LVLDEATASIDNATDS+LQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGKLVEYDE
Sbjct: 1366 LVLDEATASIDNATDSLLQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDE 1425
Query: 1228 PKKLLRRQDSLFAQLVKEYWS 1248
P KL+ ++ SLF QLVKEYWS
Sbjct: 1426 PLKLMNKEGSLFGQLVKEYWS 1446
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545090|ref|XP_002513606.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223547514|gb|EEF49009.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1642 bits (4253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1280 (61%), Positives = 974/1280 (76%), Gaps = 57/1280 (4%)
Query: 20 DLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLE 79
++D + LY+PL E D D VTPF KAG ++FWWL+ LMKKGK+K LE
Sbjct: 202 EVDISENGLYAPLN-GETDGISKADSFVQVTPFGKAGFFSSMSFWWLNSLMKKGKEKTLE 260
Query: 80 DIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIK 139
D D+P+LR A++A +CY +F+E++N Q + S+ PS+ R +ISCHWK IL SGFFA++K
Sbjct: 261 DEDIPKLRQAEQAESCYLMFLEQVNKQKQAKSSSQPSLFRTIISCHWKDILISGFFAMLK 320
Query: 140 VISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKI 199
++++SAGPL L FI AEG+ FKYE Y LA++LF+ K +ESL+ R W+F+SRL GLK+
Sbjct: 321 ILTLSAGPLLLNNFILVAEGKASFKYEGYVLALTLFISKSLESLSQRQWYFRSRLIGLKV 380
Query: 200 RSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAV 259
RS L AAI KQLRLSN ++MH+ +I+NYVTVDAYRIGEFPFWFHQ W+TSLQLCI++
Sbjct: 381 RSLLTAAIYRKQLRLSNTGRLMHSGSEIMNYVTVDAYRIGEFPFWFHQTWTTSLQLCISL 440
Query: 260 VVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVL 319
V+++ +VGLAT+A L+V+I+TVL N+PLAKLQHK+Q M AQ++RLKA +E LVNMKVL
Sbjct: 441 VILFNAVGLATLAALVVIIITVLCNTPLAKLQHKFQSKLMEAQDERLKACSEALVNMKVL 500
Query: 320 KLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPL 379
KLYAW+S+FKNVIE LR E+ WL +QL+K Y LFWSSP+L+ AAT CYFL +PL
Sbjct: 501 KLYAWESHFKNVIENLREVEHKWLSAVQLRKAYNSFLFWSSPLLVSAATFGACYFLKVPL 560
Query: 380 NPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRA 439
+ +NVFTF+ATLR++Q+PIR +PDV G I+AKV+ RI FLEAPELQN ++QQ S
Sbjct: 561 HANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARILKFLEAPELQNGNLQQKQSMD 620
Query: 440 ELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR 499
H+ I SA+ SWE + PTLRN+NLE++P +K AICGEVG+GKSTLLA+ILGE+P
Sbjct: 621 SANHATLITSANFSWEENSSKPTLRNVNLEIRPGDKVAICGEVGSGKSTLLASILGEVPN 680
Query: 500 LQGM-----------------------------------------------DLKMLPFGD 512
G D ++LP+GD
Sbjct: 681 TVGTIQVSGRIAYVSQTAWIQTGTIRENILFGSAMDSQRYQDTLERCSLVKDFELLPYGD 740
Query: 513 LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK 572
LT+IGERGVNLSGGQKQRIQLARALYQD DIYLLDDPFSA+DA+TA LF EYVMGAL++
Sbjct: 741 LTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAQTATSLFNEYVMGALAR 800
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFG 632
KTVLLVTHQVDFLPAFDS+LL+S GEI++AA Y LL +SQEFQ+LVNAH+ET G E
Sbjct: 801 KTVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSQEFQELVNAHRETAGSERLT 860
Query: 633 EHVSSKEDEN---EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLY 689
+ ++++ + E+KK E + DQLIK+EERETGDTGLKPY+ YL+ KG+LY
Sbjct: 861 DITNTQKRGSSTVEIKKTYVEKQLKVAKGDQLIKQEERETGDTGLKPYLQYLNQNKGYLY 920
Query: 690 FTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVY 749
F+++ ++L F++ QI Q+ W+A + +S L+L+ VY IG+ LL RS V
Sbjct: 921 FSIAALSHLTFVIGQIAQNSWMAANVDKPQVSPLRLIAVYLIIGVSSTLFLLCRSLSTVV 980
Query: 750 LGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTM 809
LGL++S+S+F +L++SLFRAPM+FYDSTP+GRILSRVSSDLSI+DLD+ A+G T
Sbjct: 981 LGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFSLIFAIGATT 1040
Query: 810 AVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETV 869
S VL +TWQVL V +PMI L I LQ YYFA+AKELMRINGT SL+A+HLAE+V
Sbjct: 1041 NAYSNLGVLAVVTWQVLFVSIPMIILAIRLQRYYFASAKELMRINGTTKSLVANHLAESV 1100
Query: 870 AGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTT 929
AGAMTIRAF EERFFAKNLDLID AS FFHSF A EWLIQRLETLSA VLA++ALC
Sbjct: 1101 AGAMTIRAFGEEERFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVLASAALCMV 1160
Query: 930 LLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELV 989
LL G +G+ GMALS+GLSLN LV+S+ NQC + N I+SVERLNQYM IPSEAPE++
Sbjct: 1161 LLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCTIANYIISVERLNQYMHIPSEAPEVI 1220
Query: 990 QKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLIS 1049
Q N P +WP GKV+I DLQIRYRPNAPLVLRGI+CTF+GGHKIG+VGRTGSGKTTLI
Sbjct: 1221 QDNRPPSNWPAVGKVDICDLQIRYRPNAPLVLRGISCTFQGGHKIGIVGRTGSGKTTLIG 1280
Query: 1050 ALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
ALFRLVEP GGKII+DG+DI+ IGL+DLRS GIIPQDPTLF+G+VRYNLDPLSQ +D+E
Sbjct: 1281 ALFRLVEPAGGKIIVDGIDISRIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDKE 1340
Query: 1110 IWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILV 1169
IWE VL KCQLRE +QEK++GLDS++V+DGANWSMGQRQL LGR +LRR ++LV
Sbjct: 1341 IWE------VLGKCQLREAVQEKEQGLDSMIVEDGANWSMGQRQLFCLGRALLRRSRVLV 1394
Query: 1170 LDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPK 1229
LDEATASIDNATD ILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGK+VEYDEP
Sbjct: 1395 LDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKIVEYDEPM 1454
Query: 1230 KLLRRQDSLFAQLVKEYWSH 1249
KL++ + SLF QLVKEYWSH
Sbjct: 1455 KLMKNESSLFGQLVKEYWSH 1474
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838710|emb|CAN76203.1| hypothetical protein VITISV_018996 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1633 bits (4229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/1294 (61%), Positives = 977/1294 (75%), Gaps = 61/1294 (4%)
Query: 13 GSKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKK 72
G K ++ D LY+PL E + + D GD VTPF KAG ++FWWL+PLMK+
Sbjct: 195 GYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGD-VTPFAKAGFFSSMSFWWLNPLMKR 253
Query: 73 GKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFS 132
G K LE+ D+P+LR DRA +CY F+EEL Q PS+ PSILR +I C+WK I S
Sbjct: 254 GTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSILRVIILCYWKDIFIS 313
Query: 133 GFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQS 192
GFFAL+K++++S GPL L AFI AEG+ +FK E Y LA++LF+ K VESL+ R W+F+S
Sbjct: 314 GFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVSKNVESLSQRQWYFRS 373
Query: 193 RLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTS 252
RL GL++RS L AAI KQLRLSNAAKM+H+SG+I NYVTVD YRIGEFPFWFHQ W+TS
Sbjct: 374 RLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDXYRIGEFPFWFHQTWTTS 433
Query: 253 LQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEV 312
LQLCI +V+++ +GLAT A L+V+ILTVL N+PLAKLQHK+Q M AQ++RL+A +E
Sbjct: 434 LQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSKLMVAQDERLRACSEA 493
Query: 313 LVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTC 372
LVNMKVLKLYAW+++FKNVIEKLR+ EY WL +QL+KGY LFWSSP+L+ AAT C
Sbjct: 494 LVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLFWSSPVLVSAATFGAC 553
Query: 373 YFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432
+FLGIPLN SNVFTF+A LR++Q+PIR +PDV G I+AKV+ RI FLEAPELQ S++
Sbjct: 554 FFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFARIVKFLEAPELQTSNV 613
Query: 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAA 492
+Q + + ++I IKSA+ SWE L TLR+I+LEV+ EK AICGEVG+GKSTLLAA
Sbjct: 614 RQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVAICGEVGSGKSTLLAA 673
Query: 493 ILGELPRLQGM-----------------------------------------------DL 505
ILGE+P +QG DL
Sbjct: 674 ILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPERYQATLEKCSLVKDL 733
Query: 506 KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY 565
+LP+GDLT+IGERGVNLSGGQKQRIQLARALYQD DIYLLDDPFSA+DA TA LF EY
Sbjct: 734 DLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNEY 793
Query: 566 VMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKET 625
VM ALS KTVLLVTHQVDFLPAFDS+LL+S GEIIQAA Y LLV+SQEF DLVNAHKET
Sbjct: 794 VMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLVSSQEFVDLVNAHKET 853
Query: 626 MGPETFGEHVSSKEDEN---EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLS 682
G E E V+ ++ EN E+ K E DQLIK+EERE GD G KPY+ YLS
Sbjct: 854 AGSERLAE-VTPEKFENSVREINKTYTEKQFKAPSGDQLIKQEEREIGDMGFKPYMQYLS 912
Query: 683 HKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLT 742
KG+L+F+L+ ++++F+ QI Q+ W+A + + +IS L+L++VY IG LL+
Sbjct: 913 QNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIVVYLLIGATSTLFLLS 972
Query: 743 RSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKST 802
R+ VV LGL++S+S+F +L++SLFRAPM+FYDSTP+GRILSR+S+DLSI+DLD+
Sbjct: 973 RALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRISNDLSIVDLDVPFSFV 1032
Query: 803 IAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLA 862
A G T S VL +TWQVL V +PMIY+ I LQ YYFA+AKELMRINGT SL+A
Sbjct: 1033 FAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASAKELMRINGTTKSLVA 1092
Query: 863 SHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLA 922
+HLAE++AGAMTIRAF+ EERFF KN+D ID AS FFHSF A EWLIQRLE LSA+VL+
Sbjct: 1093 NHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANEWLIQRLEALSAMVLS 1152
Query: 923 TSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIP 982
+SALC LL G AG+ GMA+S+GLSLN LV+S+ NQCI+ N I+SVERLNQYM IP
Sbjct: 1153 SSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILANYIISVERLNQYMHIP 1212
Query: 983 SEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGS 1042
SEAPE+++ + P P+WP G+V+I+DLQIRYRP+ PLVLRGI CTFEGGHKIG+VGRTGS
Sbjct: 1213 SEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCTFEGGHKIGIVGRTGS 1272
Query: 1043 GKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL 1102
GKTTLI ALFRLVEP GGKII+DG+DI+TIGL+DLRS+ GIIPQDPTLF+G+VRYNLDPL
Sbjct: 1273 GKTTLIGALFRLVEPAGGKIIVDGIDISTIGLHDLRSHFGIIPQDPTLFNGAVRYNLDPL 1332
Query: 1103 SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162
SQ TD EIWE VL KCQL+E +QEK+EGL S+V + G+NWSMGQRQL LGR +L
Sbjct: 1333 SQHTDHEIWE------VLGKCQLQEAVQEKEEGLGSIVAEGGSNWSMGQRQLFCLGRALL 1386
Query: 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
RR +ILVLDEATASIDNATD ILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGKL
Sbjct: 1387 RRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1446
Query: 1223 VEYDEPKKLLRRQDSLFAQLVKEYWSH---AEKH 1253
VEYDEP KL++R+ SLF QLV+EYWSH AE H
Sbjct: 1447 VEYDEPAKLMKREGSLFGQLVREYWSHFHSAESH 1480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490537|ref|XP_002267650.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1633 bits (4229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 802/1294 (61%), Positives = 978/1294 (75%), Gaps = 61/1294 (4%)
Query: 13 GSKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKK 72
G K ++ D LY+PL E + + D GD VTPF KAG ++FWWL+PLMK+
Sbjct: 247 GYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGD-VTPFAKAGFFSSMSFWWLNPLMKR 305
Query: 73 GKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFS 132
G K LE+ D+P+LR DRA +CY F+EEL Q PS+ PSILR +I C+WK I S
Sbjct: 306 GTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSILRVIILCYWKDIFIS 365
Query: 133 GFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQS 192
GFFAL+K++++S GPL L AFI AEG+ +FK E Y LA++LF+ K VESL+ R W+F+S
Sbjct: 366 GFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVSKNVESLSQRQWYFRS 425
Query: 193 RLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTS 252
RL GL++RS L AAI KQLRLSNAAKM+H+SG+I NYVTVDAYRIGEFPFWFHQ W+TS
Sbjct: 426 RLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYRIGEFPFWFHQTWTTS 485
Query: 253 LQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEV 312
LQLCI +V+++ +GLAT A L+V+ILTVL N+PLAKLQHK+Q M AQ++RL+A +E
Sbjct: 486 LQLCIVLVILFNILGLATFAALVVIILTVLCNAPLAKLQHKFQSKLMVAQDERLRACSEA 545
Query: 313 LVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTC 372
LVNMKVLKLYAW+++FKNVIEKLR+ EY WL +QL+KGY LFWSSP+L+ AAT C
Sbjct: 546 LVNMKVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLFWSSPVLVSAATFGAC 605
Query: 373 YFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432
+FLGIPLN SNVFTF+A LR++Q+PIR +PDV G I+AKV+ RI FLEAPELQ S++
Sbjct: 606 FFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFARIVKFLEAPELQTSNV 665
Query: 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAA 492
+Q + + ++I IKSA+ SWE L TLR+I+LEV+ EK AICGEVG+GKSTLLAA
Sbjct: 666 RQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVAICGEVGSGKSTLLAA 725
Query: 493 ILGELPRLQGM-----------------------------------------------DL 505
ILGE+P +QG DL
Sbjct: 726 ILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPERYQATLEKCSLVKDL 785
Query: 506 KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY 565
+LP+GDLT+IGERGVNLSGGQKQRIQLARALYQD DIYLLDDPFSA+DA TA LF EY
Sbjct: 786 DLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNEY 845
Query: 566 VMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKET 625
VM ALS KTVLLVTHQVDFLPAFDS+LL+S GEIIQAA Y LLV+SQEF DLVNAHKET
Sbjct: 846 VMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLVSSQEFVDLVNAHKET 905
Query: 626 MGPETFGEHVSSKEDEN---EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLS 682
G E E V+ ++ EN E+ K E DQLIK+EERE GD G KPY+ YLS
Sbjct: 906 AGSERLAE-VTPEKFENSVREINKTYTEKQFKAPSGDQLIKQEEREIGDMGFKPYMQYLS 964
Query: 683 HKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLT 742
KG+L+F+L+ ++++F+ QI Q+ W+A + + +IS L+L++VY IG LL+
Sbjct: 965 QNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIVVYLLIGATSTLFLLS 1024
Query: 743 RSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKST 802
R+ VV LGL++S+S+F +L++SLFRAPM+FYDSTP+GRILSR+S+DLSI+DLD+
Sbjct: 1025 RALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRISNDLSIVDLDVPFSFV 1084
Query: 803 IAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLA 862
A G T S VL +TWQVL V +PMIY+ I LQ YYFA+AKELMRINGT SL+A
Sbjct: 1085 FAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASAKELMRINGTTKSLVA 1144
Query: 863 SHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLA 922
+HLAE++AGAMTIRAF+ EERFF KN+D ID AS FFHSF A EWLIQRLE LSA+VL+
Sbjct: 1145 NHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANEWLIQRLEALSAMVLS 1204
Query: 923 TSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIP 982
+SALC LL G AG+ GMA+S+GLSLN LV+S+ NQCI+ N I+SVERLNQYM IP
Sbjct: 1205 SSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILANYIISVERLNQYMHIP 1264
Query: 983 SEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGS 1042
SEAPE+++ + P P+WP G+V+I+DLQIRYRP+ PLVLRGI CTFEGGHKIG+VGRTGS
Sbjct: 1265 SEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCTFEGGHKIGIVGRTGS 1324
Query: 1043 GKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL 1102
GKTTLI ALFRLVEP GGKII+DG+DI+TIGL+DLRS+ GIIPQDPTLF+G+VRYNLDPL
Sbjct: 1325 GKTTLIGALFRLVEPAGGKIIVDGIDISTIGLHDLRSHFGIIPQDPTLFNGAVRYNLDPL 1384
Query: 1103 SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162
SQ TD EIWE VL KCQL+E +QEK+EGL S+V + G+NWSMGQRQL LGR +L
Sbjct: 1385 SQHTDHEIWE------VLGKCQLQEAVQEKEEGLGSIVAEGGSNWSMGQRQLFCLGRALL 1438
Query: 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
RR +ILVLDEATASIDNATD ILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGKL
Sbjct: 1439 RRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1498
Query: 1223 VEYDEPKKLLRRQDSLFAQLVKEYWSH---AEKH 1253
VEYDEP KL++R+ SLF QLV+EYWSH AE H
Sbjct: 1499 VEYDEPAKLMKREGSLFGQLVREYWSHFHSAESH 1532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473894|ref|XP_002271761.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1630 bits (4220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/1289 (61%), Positives = 985/1289 (76%), Gaps = 56/1289 (4%)
Query: 12 SGSKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMK 71
SG K D + Y+PL E + + + PF KAGL+ +++FWWL+ L+K
Sbjct: 198 SGPKYAGTDSEIDGAGFYTPLPGEGGSGGDKINSDASLPPFQKAGLISRLSFWWLNSLIK 257
Query: 72 KGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILF 131
KGK+K LED D+PQLR DRA CYS+F+E+ N KR S PSIL ++ WK ILF
Sbjct: 258 KGKEKTLEDKDIPQLRREDRAEMCYSMFMEQQNKQKNKRSSHSPSILSTILLWQWKQILF 317
Query: 132 SGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQ 191
SGF+ALIKV+++S GPLFL+AFI AEG+ F+YE Y+L LFL KC+ESL+ R WFF+
Sbjct: 318 SGFYALIKVLTLSTGPLFLRAFILVAEGKEAFEYEGYALTGGLFLTKCLESLSERQWFFR 377
Query: 192 SRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWST 251
+RL GL++RS L AAI KQL+LSNAAK ++ G I+N+VT+DAY+IGE+P+WFHQIWST
Sbjct: 378 TRLIGLQVRSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYKIGEYPYWFHQIWST 437
Query: 252 SLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITE 311
SLQLC+A++++YYSVGLATIA L V+ILTV+ NSP+ KLQHKYQ+ M Q+KRLK TE
Sbjct: 438 SLQLCLALLIIYYSVGLATIAALSVVILTVVTNSPMGKLQHKYQKMLMGTQDKRLKTFTE 497
Query: 312 VLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLT 371
L NMK+LKLYAW+++FKNVIE LR EE+ WL + Q+GY ++LFWSSPI++ A T
Sbjct: 498 ALTNMKILKLYAWETHFKNVIEGLRKEEFKWLSSVLSQRGYNLILFWSSPIVVSAVTFWA 557
Query: 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431
CYFLG L+ +NVFTF+A+LR+ QEPIRL+PDV AFIEAKVSLDRIA FL+APELQN
Sbjct: 558 CYFLGTTLSATNVFTFMASLRLAQEPIRLIPDVISAFIEAKVSLDRIAKFLDAPELQNKH 617
Query: 432 MQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLA 491
++++C ELE SIFIKS +SWE + TLRNI L VKP EK AICGEVG+GKSTLLA
Sbjct: 618 VRKMCDGKELEESIFIKSNRISWEDNTTRATLRNITLVVKPGEKVAICGEVGSGKSTLLA 677
Query: 492 AILGELPRLQGM-----------------------------------------------D 504
A+LGE+P + G+ D
Sbjct: 678 AVLGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREVIEKCALVKD 737
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
L+MLPFGDLT+IGERGVNLSGGQKQR+QLARALYQD D+YLLDDPFSA+DA TA LF E
Sbjct: 738 LEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNE 797
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKE 624
YVMGALS KTV+LVTHQVDFLPAFDS+LL+S GEI+QAAT++ L+ SQEFQDLVNAH
Sbjct: 798 YVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMRFSQEFQDLVNAHNA 857
Query: 625 TMGPETFGEHVS---SKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYL 681
T+G E E S SK + E++K+ E + +QLIKKEERE GDTGLKPY+ YL
Sbjct: 858 TVGSERQPEQDSTQKSKIPKGEIQKIYTEKQLRDTSGEQLIKKEEREIGDTGLKPYLQYL 917
Query: 682 SHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLL 741
+ KGFLYF L+T +++IF+V Q++Q+ W+A + ++S+S+LKL+ VY+GIG+ + LL
Sbjct: 918 KYSKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGLSLSLFLL 977
Query: 742 TRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801
RSF VV LGLEAS+SIF L+SSLFRAPM+FYDSTP+GRILSRVSSDLS++DLD++ K
Sbjct: 978 LRSFFVVLLGLEASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKF 1037
Query: 802 TIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLL 861
T AVG M ++F VL L W+++ VI+P IYL I++Q YYFA KELMRINGT S +
Sbjct: 1038 TFAVGAAMNAYASFGVLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFV 1097
Query: 862 ASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVL 921
ASHL+E++AGAMTIRAF +E+R F+KNL ID AS FF+SFTA EWLIQRLE L AIVL
Sbjct: 1098 ASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVL 1157
Query: 922 ATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI 981
++SAL TL+H AG+ GMALS+GLS+N FLV+SV +QC++ N+IVSVERL Q+M I
Sbjct: 1158 SSSALALTLIHTRASKAGFIGMALSYGLSVNIFLVFSVQSQCLLANMIVSVERLEQFMNI 1217
Query: 982 PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
PSEAP +++ P WP G+VEIYDL+++YRPNAPLVL+GI+C GG KIG+VGRTG
Sbjct: 1218 PSEAPAVIESYQPPLSWPAIGEVEIYDLKVKYRPNAPLVLQGISCKIGGGQKIGIVGRTG 1277
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP 1101
SGKTTLIS LFRLVEPT G+IIIDG++I+TIGL+DLRS LGIIPQ+PTLFSG+VRYNLDP
Sbjct: 1278 SGKTTLISTLFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGAVRYNLDP 1337
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
LS TD+EIWE VLEKCQLR +QEK+EGLDSLVVQDG+NWSMGQRQL LGR +
Sbjct: 1338 LSLHTDEEIWE------VLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRAL 1391
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
LRR +ILVLDEATASIDNATDSILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGK
Sbjct: 1392 LRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGK 1451
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
LVEYDEP KL++++ SLF QLVKEYWS +
Sbjct: 1452 LVEYDEPMKLIKKEGSLFGQLVKEYWSRS 1480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473896|ref|XP_002271694.2| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1620 bits (4195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1274 (61%), Positives = 973/1274 (76%), Gaps = 57/1274 (4%)
Query: 27 ALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQL 86
A Y+PL E + + + PF+KAGL+ +++FWWL+ LMKKGK K LED D+PQL
Sbjct: 213 AFYTPLPGEGGSGGDKINTDASLPPFEKAGLISRLSFWWLNSLMKKGKQKTLEDKDIPQL 272
Query: 87 RLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVISISAG 146
R DRA CY +F+E+ N +K+ S PSIL ++ K IL SGFFAL+KV+++S G
Sbjct: 273 RREDRAEMCYLMFMEQQNK-QKKQSSDSPSILSTILLWQRKQILISGFFALMKVLTLSTG 331
Query: 147 PLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAA 206
PLFL+AFI AEG FKYE Y+L LFL+KC+ESL+ R WFF++RL GL++RS L AA
Sbjct: 332 PLFLRAFILVAEGREAFKYEGYALTGGLFLIKCLESLSERQWFFRTRLIGLQVRSFLSAA 391
Query: 207 ISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSV 266
I KQL+LSNAAK ++ G I+N+VT+DAY IGE+P+WFHQIWSTS+QLC+A++++YYSV
Sbjct: 392 IYQKQLKLSNAAKGSYSPGQIINFVTIDAYNIGEYPYWFHQIWSTSVQLCLALIIIYYSV 451
Query: 267 GLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDS 326
GLATIA L V+ILTV+ NSP+ +LQHKYQ+ M Q+KRLKA E L NMK LKLYAW++
Sbjct: 452 GLATIAALFVVILTVVANSPMGRLQHKYQKMLMGTQDKRLKAFAEALTNMKSLKLYAWET 511
Query: 327 YFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFT 386
+FKNVIE+LR EE+ WL + QKGY ++LFWSSPI++ A T CYFLG L+ SNVFT
Sbjct: 512 HFKNVIERLRKEEFKWLLSVLSQKGYNLILFWSSPIVVSAVTFWACYFLGTTLSASNVFT 571
Query: 387 FLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIF 446
F+A+L I QEPIRL+PDV AFIEA VSLDRIA FL+APELQN ++++C EL S+F
Sbjct: 572 FMASLCIAQEPIRLIPDVISAFIEAMVSLDRIAKFLDAPELQNKHVRKMCDGMELAESVF 631
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM--- 503
IKS +SWE + TLRNINL VKP EK AICGEVG+GKSTLLAAILGE+P + G+
Sbjct: 632 IKSKRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAAILGEVPHVNGIVRV 691
Query: 504 --------------------------------------------DLKMLPFGDLTQIGER 519
DL+MLPFGDLT+IGER
Sbjct: 692 YGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGER 751
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVT 579
GVNLSGGQKQR+QLARALY+D D+YLLDDPFSA+DA TA LF EYVMGALS KTV+LVT
Sbjct: 752 GVNLSGGQKQRVQLARALYRDADVYLLDDPFSAVDAHTATNLFNEYVMGALSMKTVILVT 811
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFGEHVS--- 636
HQVDFLPAFDS+LL+S GEI+QAAT+D L+ +SQEFQDL+ AH T+G E EH S
Sbjct: 812 HQVDFLPAFDSVLLMSEGEILQAATFDQLMHSSQEFQDLIIAHNATVGSERQPEHDSTQK 871
Query: 637 SKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFA 696
SK + E++K++ E S +QLIKKEERETGDTGLKPY+ YL + KG YF L+ +
Sbjct: 872 SKIPKGEIQKIDSEKQLRDSLGEQLIKKEERETGDTGLKPYLQYLKYSKGLFYFFLANLS 931
Query: 697 YLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASE 756
++IF+VAQ++Q+ W+A + + S+S+LKL+ VY+GIG+ + LL RSF VV +GL AS+
Sbjct: 932 HIIFIVAQLVQNYWLAANVQNPSVSQLKLIAVYTGIGLSLSIFLLLRSFFVVVVGLGASQ 991
Query: 757 SIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFV 816
SIF L+SSLFRAPM+FYDSTP+GRILSRVSSDLS++DLD++ K T A+G + ++F
Sbjct: 992 SIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDMAFKFTFAIGAAVTTYASFG 1051
Query: 817 VLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIR 876
VL L W+++ VI+P IYL I++Q YYFA KELMRINGT S +ASHLAE++AGAMTIR
Sbjct: 1052 VLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLAESIAGAMTIR 1111
Query: 877 AFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHK 936
AF E+R F+KNLD ID AS FF+SFTA EWLIQRLE L AIVL++SAL TLLH
Sbjct: 1112 AFGEEDRHFSKNLDFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLLHTSSS 1171
Query: 937 GAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAP 996
+G+ GMALS+GLS+N F V+S +QC++ N+IVSVERL QYM IPSEAPE++ N P P
Sbjct: 1172 KSGFIGMALSYGLSVNVFFVFSAQSQCLLANMIVSVERLEQYMNIPSEAPEVIGSNRPPP 1231
Query: 997 DWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE 1056
WP G+VEIYDL+++YRPNAPLVL+GI+C F GG KIG+VGRTGSGKTTLISALFRLVE
Sbjct: 1232 SWPTIGEVEIYDLKVKYRPNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISALFRLVE 1291
Query: 1057 PTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIP 1116
PT G+IIIDG++I+TIGL+DLRS LGIIPQ+PTLFSGS+RYNLDPLS TD+EIWE
Sbjct: 1292 PTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGSIRYNLDPLSLHTDEEIWE---- 1347
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
VL KCQLR +QEK+EGLDSLVV DG+NWSMGQRQL LGR +L+R +ILVLDEATAS
Sbjct: 1348 --VLGKCQLRGAVQEKEEGLDSLVVHDGSNWSMGQRQLFCLGRALLKRSRILVLDEATAS 1405
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
IDNATDSILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGKLVEYD P KL++++
Sbjct: 1406 IDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDVPMKLIKKEG 1465
Query: 1237 SLFAQLVKEYWSHA 1250
SLF QLV EYWS +
Sbjct: 1466 SLFGQLVTEYWSRS 1479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116838|ref|XP_002331826.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222875064|gb|EEF12195.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1618 bits (4191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1285 (60%), Positives = 972/1285 (75%), Gaps = 59/1285 (4%)
Query: 15 KCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGK 74
K K + +E+ D +Y+PL E + + + VTPF KAG K++FWWL+PLM+KGK
Sbjct: 142 KVYKHEGNEERD-MYAPLNGEA-NGVSKINSVNQVTPFAKAGFFNKMSFWWLNPLMRKGK 199
Query: 75 DKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGF 134
+K LED D+P+LR A+RA +CY F+E+LN Q S+ PS+L ++ CHWK I+ SGF
Sbjct: 200 EKTLEDEDIPKLREAERAESCYMEFLEQLNKQKQAE-SSQPSLLWTIVFCHWKDIVISGF 258
Query: 135 FALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194
FA++K++++SAGPL L AFI AEG+ FKYE Y L ++LF K +ESL+ R W+F+SRL
Sbjct: 259 FAMLKILTLSAGPLLLNAFILVAEGKAGFKYEGYVLVLTLFFSKSLESLSQRQWYFRSRL 318
Query: 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQ 254
GLK+RS L AAI KQ RLSN ++MH+ G+I+NYVTVDAYRIGEFPFWFHQ W+TS Q
Sbjct: 319 VGLKVRSLLTAAIYKKQQRLSNVGRLMHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSFQ 378
Query: 255 LCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLV 314
LC+++ +++ +VGLAT+A L+V+I+TVL N+PLAKLQHK+Q M AQ+ RLKA E LV
Sbjct: 379 LCLSLAILFRAVGLATLAALVVIIITVLCNTPLAKLQHKFQSKLMVAQDARLKACNEALV 438
Query: 315 NMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYF 374
NMKVLKLYAW+++FKN IE LR+ EY WL +Q +K Y LFWSSP+L+ AT CYF
Sbjct: 439 NMKVLKLYAWETHFKNAIENLRNVEYKWLSAVQTRKAYNGFLFWSSPVLVSTATFGACYF 498
Query: 375 LGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQ 434
L IPL+ +NVFTF+ATLR++Q+PIR +PDV G I+AKV+ RI FLEAPELQN +++
Sbjct: 499 LKIPLHANNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVAFARIVKFLEAPELQNGNVRH 558
Query: 435 VCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL 494
+ ++H++ IKSA+ SWE + PTLRN++ ++P EK AICGEVG+GKSTLLAAIL
Sbjct: 559 KRNMGSVDHAVLIKSANFSWEENSSKPTLRNVSFGIRPGEKVAICGEVGSGKSTLLAAIL 618
Query: 495 GELPRLQGM-----------------------------------------------DLKM 507
GE+P QG DL++
Sbjct: 619 GEVPHTQGTIQVCGRIAYVSQTAWIQTGSIQENILFGSEMDRQRYHDTLERCSLVKDLEL 678
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP+GDLT+IGERGVNLSGGQKQRIQLARALYQ+ DIYLLDDPFSA+DA TA LF EY+M
Sbjct: 679 LPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNEYIM 738
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMG 627
GALS+K VLLVTHQVDFLPAFDS++L+S GEI+QAA Y LL++SQEF DLVNAHKET G
Sbjct: 739 GALSRKIVLLVTHQVDFLPAFDSVMLMSDGEILQAAPYHQLLLSSQEFLDLVNAHKETAG 798
Query: 628 PETFGEHVSSKEDEN---EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHK 684
E E +S+ + E+KK EG TS DQLIK+EE+E GDTG KPY+ YL+
Sbjct: 799 SERHTEVDASQRQGSSVREIKKSYVEGQIKTSQGDQLIKQEEKEVGDTGFKPYVQYLNQN 858
Query: 685 KGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRS 744
KG++YF+++ F++L+F++ QI Q+ W+A + +S L+L+ VY IG+ LL RS
Sbjct: 859 KGYVYFSIAAFSHLLFVIGQITQNSWMAANVDDPHVSTLRLITVYLCIGVTSTLFLLCRS 918
Query: 745 FLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIA 804
+V LGL++S+S+F +L++SLFRAPM+FYDSTP+GRILSRV+SDLSI+DLD+ A
Sbjct: 919 ISIVVLGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVTSDLSIVDLDVPFTLIFA 978
Query: 805 VGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASH 864
VG T S VL +TWQVL V +PM+YL I LQ YYFA+AKELMRINGT SL+++H
Sbjct: 979 VGATTNAYSNLGVLAVVTWQVLFVSIPMVYLAIRLQAYYFASAKELMRINGTTKSLVSNH 1038
Query: 865 LAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS 924
LAE++AGAMTIRAF+ EERFFAK L+LID AS FFHSF A EWLIQRLE SA VLA++
Sbjct: 1039 LAESIAGAMTIRAFEEEERFFAKTLNLIDINASPFFHSFAANEWLIQRLEIFSATVLASA 1098
Query: 925 ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSE 984
ALC LL G +G+ GMALS+GLSLN LV+S+ NQC + N I+SVERLNQYM IPSE
Sbjct: 1099 ALCMVLLPPGTFNSGFIGMALSYGLSLNMSLVFSIQNQCTLANYIISVERLNQYMHIPSE 1158
Query: 985 APELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGK 1044
APE+++ N P +WP GKV+I DLQIRYRPNAPLVLRGI+CTFEGGHKIG+VGRTGSGK
Sbjct: 1159 APEVIKDNRPPSNWPEKGKVDICDLQIRYRPNAPLVLRGISCTFEGGHKIGIVGRTGSGK 1218
Query: 1045 TTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ 1104
TTLI ALFRLVEP GGKII+D +DI+ IGL+DLRS LGIIPQDPTLF+G+VRYNLDPLSQ
Sbjct: 1219 TTLIGALFRLVEPAGGKIIVDEIDISKIGLHDLRSRLGIIPQDPTLFNGTVRYNLDPLSQ 1278
Query: 1105 FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164
TDQEIWE VL KCQLRE +QEK++GLDSLVV+DG NWSMGQRQL LGR +LRR
Sbjct: 1279 HTDQEIWE------VLGKCQLREAVQEKEQGLDSLVVEDGLNWSMGQRQLFCLGRALLRR 1332
Query: 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
++LVLDEATASIDNATD +LQ TIR EF++CTVITVAHRI TVMDC MVLS+SDGKLVE
Sbjct: 1333 SRVLVLDEATASIDNATDLVLQKTIRTEFSDCTVITVAHRIPTVMDCTMVLSISDGKLVE 1392
Query: 1225 YDEPKKLLRRQDSLFAQLVKEYWSH 1249
YDEP+KL++ + SLF QLVKEYWSH
Sbjct: 1393 YDEPEKLMKTEGSLFGQLVKEYWSH 1417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535814|ref|XP_003536438.1| PREDICTED: ABC transporter C family member 10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1607 bits (4162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1293 (60%), Positives = 968/1293 (74%), Gaps = 64/1293 (4%)
Query: 14 SKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKG 73
SK + D E ++ LY+PL E + +D +VTPF K G ++TFWWL+PLMK G
Sbjct: 198 SKHRDTD-SEIDENLYAPLNGE----SNKNDSIRYVTPFAKTGFFGRMTFWWLNPLMKMG 252
Query: 74 KDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSG 133
K+K L D D+P+LR DRA +CY LF+++LN S PS+LR +I CHWK IL SG
Sbjct: 253 KEKTLHDEDIPRLREEDRAESCYLLFLDQLNRQKLNDQSWQPSVLRTIILCHWKEILISG 312
Query: 134 FFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSR 193
FFAL+KV+++S+GPL L +FI AEG FKYE + LAISLF K +ESL+ R W+F+ R
Sbjct: 313 FFALLKVVALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKNIESLSQRQWYFRCR 372
Query: 194 LTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSL 253
L GLK+RS L AAI KQLRLSN+A++MH+SG+I+NYVTVDAYRIGEFP+WFHQ W+TS
Sbjct: 373 LIGLKVRSLLTAAIYRKQLRLSNSARLMHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSF 432
Query: 254 QLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVL 313
QLCI++V+++ +VG ATIA+L+V+++TVL N+PLAKLQHK+Q M Q+ RLKA +E L
Sbjct: 433 QLCISLVILFRAVGWATIASLVVIVITVLCNTPLAKLQHKFQSKLMVTQDDRLKACSEAL 492
Query: 314 VNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCY 373
VNMKVLKLYAW++ F++ IE+LR+EE WL +QL+K Y LFWSSP+L+ AA+ CY
Sbjct: 493 VNMKVLKLYAWETNFRSSIERLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACY 552
Query: 374 FLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQ 433
FL +PL+ +NVFTF+ATLR++Q+PIR +PDV G I+AKV+ RI FLEAPELQ+ ++
Sbjct: 553 FLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQSVNIT 612
Query: 434 QVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
Q C SI IKSAD SWE ++ PTLRNINLEV+P +K AICGEVG+GKSTLLAAI
Sbjct: 613 QRCLNENKRGSILIKSADFSWEDNVSKPTLRNINLEVRPGQKVAICGEVGSGKSTLLAAI 672
Query: 494 LGELPRLQGM-----------------------------------------------DLK 506
L E+ QG DL+
Sbjct: 673 LREVLNTQGTTEVYGKFAYVSQTAWIQTGTIKENILFGAAMDAEKYQETLHRSSLLKDLE 732
Query: 507 MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV 566
+ P GDLT+IGERGVNLSGGQKQRIQLARALYQ+ DIYLLDDPFSA+DA TA LF EY+
Sbjct: 733 LFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYI 792
Query: 567 MGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETM 626
M L+ KTVLLVTHQVDFLPAFDS+LL+S GEII+AA Y HLL +SQEFQDLVNAHKET
Sbjct: 793 MEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIEAAPYYHLLSSSQEFQDLVNAHKETA 852
Query: 627 GPETFGEHVSSKEDEN---EVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSH 683
G + E S ++ N E++K E H S DQLIK+EERE GD G KPYI YL+
Sbjct: 853 GSDRLVEVTSPQKQSNSAREIRKTSTEQHYEASKGDQLIKQEEREKGDQGFKPYIQYLNQ 912
Query: 684 KKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTR 743
KG++YF+++ ++L F+V QILQ+ W+A + + +S L+L++VY IG+ LL R
Sbjct: 913 NKGYIYFSVAALSHLTFVVGQILQNSWMAASVDNPQVSTLQLILVYLLIGVISTLFLLMR 972
Query: 744 SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803
S VV LGL++S+S+F +L++SLFRAPM+FYDSTP+GRILSRVSSDLSI+DLD+
Sbjct: 973 SLFVVALGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGFVF 1032
Query: 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863
AVG TM + VL +TWQVL V +PMIY I LQ YYFA+AKELMR+NGT S +A+
Sbjct: 1033 AVGATMNCYANLTVLAVVTWQVLFVSIPMIYFAISLQRYYFASAKELMRLNGTTKSFVAN 1092
Query: 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT 923
HLAE+VAGA+TIRAF+ E+RFF KNLDLID AS +F SF A EWLIQRLET+SA+VLA+
Sbjct: 1093 HLAESVAGAVTIRAFEEEDRFFEKNLDLIDVNASPYFQSFAANEWLIQRLETVSAVVLAS 1152
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPS 983
+ALC +L G +G+ GMALS+GLSLN LV+S+ NQC + N I+SVERLNQYM IPS
Sbjct: 1153 AALCMVVLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCNIANYIISVERLNQYMHIPS 1212
Query: 984 EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
EAPE++ N P +WP G+V+I +LQIRYRP+APLVLRGITCTFEGGHKIG+VGRTGSG
Sbjct: 1213 EAPEVIAGNRPPANWPVAGRVQINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSG 1272
Query: 1044 KTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS 1103
K+TLI ALFRLVEP GGKII+DG+DI +IGL+DLRS GIIPQDPTLF+G+VRYNLDPLS
Sbjct: 1273 KSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS 1332
Query: 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163
Q +DQEIWE L KCQL+E +QEK+EGLDS VV+ GANWSMGQRQL LGR +LR
Sbjct: 1333 QHSDQEIWE------ALGKCQLQETVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLR 1386
Query: 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
R +ILVLDEATASIDNATD ILQ TIR EF++CTVITVAHRI TVMDC VL++SDGKLV
Sbjct: 1387 RSRILVLDEATASIDNATDLILQKTIRTEFSDCTVITVAHRIPTVMDCTKVLAISDGKLV 1446
Query: 1224 EYDEPKKLLRRQDSLFAQLVKEYWSH---AEKH 1253
EYDEP L++R+ SLF +LVKEYWSH AE H
Sbjct: 1447 EYDEPMNLIKREGSLFGKLVKEYWSHFQSAESH 1479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473892|ref|XP_003631374.1| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1593 bits (4124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 791/1289 (61%), Positives = 972/1289 (75%), Gaps = 67/1289 (5%)
Query: 12 SGSKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMK 71
SG K D + Y+PL E + + + PF+KAGL+ +++FWWL+ LMK
Sbjct: 198 SGPKYAGTDSEIDGAGFYTPLPGEGGSGGDKINSDASLPPFEKAGLISRLSFWWLNSLMK 257
Query: 72 KGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILF 131
KGK+K LED D+PQLR DRA CY +F+E+ N KR S PSIL + WK IL
Sbjct: 258 KGKEKTLEDKDIPQLRKEDRAEMCYLMFMEQQNKQKNKRSSDSPSILSTICLWQWKQILI 317
Query: 132 SGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQ 191
SG FALIKV+++S GPLFL+AFI AEG+ FKYE Y+L LFL KC+ESL+ R WFF+
Sbjct: 318 SGIFALIKVLTLSTGPLFLRAFILVAEGKEAFKYEGYALTGGLFLTKCLESLSERQWFFR 377
Query: 192 SRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWST 251
+RL GL++RS L AAI KQL+LSNAAK ++ G I+N+VT+DAY+IGE+P+WFHQIWST
Sbjct: 378 TRLIGLQVRSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYKIGEYPYWFHQIWST 437
Query: 252 SLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITE 311
SLQLC+ GLATIA L V+ILTV+ NSP+ KLQHKYQ+T M Q+KRLKA TE
Sbjct: 438 SLQLCL---------GLATIAALFVVILTVIANSPMGKLQHKYQKTLMGTQDKRLKAFTE 488
Query: 312 VLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLT 371
L NMK+LKLYAW+++FKNVIE LR EE+ WL + Q+GY ++L+WS PI++
Sbjct: 489 ALTNMKILKLYAWETHFKNVIEGLRKEEFKWLSSVLSQRGYSLILWWSFPIVVSVVAFWA 548
Query: 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431
CYFLG L+ +NVFTF+A+LRI QEPIRL+PDV AFIEAKVSLDRIA FL+APELQN
Sbjct: 549 CYFLGTTLSATNVFTFMASLRIAQEPIRLIPDVISAFIEAKVSLDRIAKFLDAPELQNKH 608
Query: 432 MQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLA 491
++++C ELE SIFIKS +SWE + TLRNINL VKP EK AICGEVG+GKSTLLA
Sbjct: 609 VRRMCDGKELEESIFIKSNRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLA 668
Query: 492 AILGELPRLQGM-----------------------------------------------D 504
AILGE+P + G+ D
Sbjct: 669 AILGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIRENILFGSAMDPYRYREAIEKCALVKD 728
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
L+MLPFGDLT+IGERGVNLSGGQKQR+QLARALYQD D+YLLDDPFSA+DA TA LF E
Sbjct: 729 LEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNE 788
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKE 624
YVMGALS KTV+LVTHQVD LPAFDS+LL+S GEI++AATYD L+ +SQEFQDLVNAH
Sbjct: 789 YVMGALSTKTVILVTHQVDLLPAFDSVLLMSEGEILEAATYDLLMHSSQEFQDLVNAHNA 848
Query: 625 TMGPETFGEHVS---SKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYL 681
T+G E EH S SK + E++++ E + +QLIKKEERETGDTGLKPY+ YL
Sbjct: 849 TVGSEMQPEHDSTQKSKIPKGEIQEICTEKQLRDTSGEQLIKKEERETGDTGLKPYLQYL 908
Query: 682 SHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLL 741
+ KGFLYF L+T +++IF+V Q++Q+ W+A + ++S+S+LKL+ VY+GIG+ + L L
Sbjct: 909 KYCKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGL-SLSLFL 967
Query: 742 TRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801
V LGL AS+SIF L+SSLFRAPM+FYDSTP+GRILSRVSSDLS++DLD++ K
Sbjct: 968 LLRSFFVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKF 1027
Query: 802 TIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLL 861
T +VG M ++F L L W+++LVI+P IYL I++Q YYFA KELMRINGT S +
Sbjct: 1028 TFSVGAAMNTYASFGALAILAWELVLVILPTIYLSILIQRYYFAAGKELMRINGTTKSFV 1087
Query: 862 ASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVL 921
ASHL+E++AGAMTIRAF +E+R F+KNL ID AS FF+SFTA EWLIQRLE L AIVL
Sbjct: 1088 ASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVL 1147
Query: 922 ATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI 981
++SAL TLLH AG+ GMALS+GLS+N FLV+SV +QC++ N+IVSVERL Q++ I
Sbjct: 1148 SSSALALTLLHTSAAKAGFIGMALSYGLSVNAFLVFSVQSQCLLANMIVSVERLEQFLNI 1207
Query: 982 PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
PSEAP++++ N P WP G+VEIYDL+++YRPNAPLVL+GI+C F GG KIG+VGRTG
Sbjct: 1208 PSEAPDVMESNQPPLSWPAIGEVEIYDLKVKYRPNAPLVLQGISCKFGGGQKIGIVGRTG 1267
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP 1101
SGKTTLIS LFRLVEPT G+IIIDG++I+TIG++DLRS LGIIPQ+PTLFSGSVRYNLDP
Sbjct: 1268 SGKTTLISTLFRLVEPTEGRIIIDGINISTIGVHDLRSRLGIIPQEPTLFSGSVRYNLDP 1327
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
LS TD+EIWE VLEKCQLR +QEK+EGLDSLVVQDG+NWSMGQRQL LGR +
Sbjct: 1328 LSLHTDEEIWE------VLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRAL 1381
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
L+R +ILVLDEATASIDNATDSILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGK
Sbjct: 1382 LKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGK 1441
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
LVEYDEP KL+ ++ SLF QLVKEYWS +
Sbjct: 1442 LVEYDEPMKLI-KEGSLFGQLVKEYWSRS 1469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426056|ref|XP_002271728.1| PREDICTED: ABC transporter C family member 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1590 bits (4118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1289 (62%), Positives = 978/1289 (75%), Gaps = 57/1289 (4%)
Query: 12 SGSKCKKIDLDEQNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMK 71
+G K D A Y PL E A + + + PF+KAGL+ +++FWWL+ LMK
Sbjct: 393 TGPKYAGTDSGFDGAAFYRPLPGEGSSAGDKINTDASLPPFEKAGLISRMSFWWLNSLMK 452
Query: 72 KGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILF 131
KGK K LED D+PQLR DRA CY +F+E+ N Q+ + PSIL ++ WK IL
Sbjct: 453 KGKQKTLEDKDIPQLRREDRAEMCYLMFMEQQNKQKQQSSDS-PSILSTILLWQWKQILI 511
Query: 132 SGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQ 191
SGFFAL+KV+++S GPLFL+AFI AEG+ FKYE Y+L LFL KC+ESL+ R WFF+
Sbjct: 512 SGFFALMKVLTLSTGPLFLRAFILVAEGKEAFKYEGYALTGGLFLTKCLESLSERQWFFR 571
Query: 192 SRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWST 251
+RL GL++RS L AAI KQL+LSN AK +++ IV++V +DAY IGEFP+WFHQIWST
Sbjct: 572 TRLIGLQVRSFLSAAIYQKQLKLSNTAKGLYSPAQIVSFVIIDAYNIGEFPYWFHQIWST 631
Query: 252 SLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITE 311
SLQLC+A++++YYS+GLATIA L V+ILTV+ NSP+ +LQHKYQ+ M Q+KRLKA TE
Sbjct: 632 SLQLCLALIIIYYSLGLATIAALFVVILTVVANSPMGRLQHKYQKMLMGTQDKRLKAFTE 691
Query: 312 VLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLT 371
L NMK LKLYAW+++FKNVIE+LR EE+ WL + QKGY ++LFWSSPI++ A T
Sbjct: 692 ALTNMKSLKLYAWETHFKNVIERLRKEEFKWLVSVLSQKGYSLILFWSSPIVVSAITFTA 751
Query: 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431
CYF+G L+ SNVFTF+A+LRI QEPIRL+PDV AFIEAKVSLDRIA FL+APELQN
Sbjct: 752 CYFIGTTLSASNVFTFMASLRIAQEPIRLIPDVITAFIEAKVSLDRIAKFLDAPELQNKH 811
Query: 432 MQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLA 491
++++C ELE SIFIKS +SWE + TLRNINL VKP E+ AICGEVG+GKSTLLA
Sbjct: 812 VRKMCDGKELEESIFIKSNRISWEDNSTRATLRNINLVVKPGERVAICGEVGSGKSTLLA 871
Query: 492 AILGELPRLQGM-----------------------------------------------D 504
AILGE+P + G+ D
Sbjct: 872 AILGEVPHINGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKD 931
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
L+MLPFGDLT+IGERGVNLSGGQKQR+QLARALYQD D+YLLDDPFSA+DA TA LF E
Sbjct: 932 LEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNE 991
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKE 624
YVMGALS KTV+LVTHQVDFLPAFDS+LL+S GEI+QAAT++ L+ +SQEFQDLVNAH
Sbjct: 992 YVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMHSSQEFQDLVNAHNA 1051
Query: 625 TMGPETFGEHVS---SKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYL 681
T+ E EH S SK + E++K+ E + +QLIKKEERETGDTGLKPY+ YL
Sbjct: 1052 TVRSERQPEHDSTQKSKIQKGEIQKIYTEKQLRETSGEQLIKKEERETGDTGLKPYLQYL 1111
Query: 682 SHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLL 741
+ KGFLYF L+T +++ F+V Q++Q+ W+A I ++S+S+LKL+ VY+GIG+ + LL
Sbjct: 1112 KYSKGFLYFFLATLSHITFIVEQLVQNYWLAANIHNSSVSQLKLITVYTGIGLSLSLFLL 1171
Query: 742 TRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801
RSF VV LGL AS+SIF L+SSLFRAPM+FYDSTP+GRILSRVSSDLS++DLD++ K
Sbjct: 1172 LRSFFVVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKF 1231
Query: 802 TIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLL 861
T+AVGTTM + F VL L W+++ VI+P IYL I++Q YYFA KELMRINGT S +
Sbjct: 1232 TVAVGTTMNAYANFGVLTILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFV 1291
Query: 862 ASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVL 921
ASHL+E++AGAMTIRAF E+R F+KNL ID AS FF+SFTA EWLI RLE LSAIVL
Sbjct: 1292 ASHLSESIAGAMTIRAFGEEDRHFSKNLGFIDMNASPFFYSFTANEWLILRLEILSAIVL 1351
Query: 922 ATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI 981
++S L TLLH +G+ GMALS+GLS N FLV+SV NQC + N+IVSVERL QY I
Sbjct: 1352 SSSGLALTLLHTSTSKSGFIGMALSYGLSANVFLVFSVQNQCHLANMIVSVERLEQYTNI 1411
Query: 982 PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
PSEAPE+++ N P WP G+VEIYDL+++YRPNAPLVL GI+C F GG KIG+VGRTG
Sbjct: 1412 PSEAPEVIESNRPPVSWPTIGEVEIYDLKVKYRPNAPLVLHGISCKFGGGQKIGIVGRTG 1471
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP 1101
SGKTTLIS LFRLVEPT G+IIIDG+DI TIGL+DLRS LGIIPQ+PTLFSGSVRYNLDP
Sbjct: 1472 SGKTTLISILFRLVEPTEGQIIIDGIDIATIGLHDLRSRLGIIPQEPTLFSGSVRYNLDP 1531
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
LS TD+EIW VLEKCQLR +QEK+EGLDSLVVQDG+NWSMGQRQL LGR +
Sbjct: 1532 LSLHTDEEIW------VVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRAL 1585
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
LRR +ILVLDEATASIDNATDSILQ TIR EFA+CTVITVAHRI TVMDC MVL++SDGK
Sbjct: 1586 LRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGK 1645
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
LVEYDEP KL++ + SLF QLVKEYWS +
Sbjct: 1646 LVEYDEPMKLIKEEGSLFGQLVKEYWSRS 1674
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1255 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.588 | 0.508 | 0.603 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.465 | 0.385 | 0.410 | 3.9e-251 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.470 | 0.389 | 0.402 | 6.7e-245 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.590 | 0.496 | 0.393 | 1.6e-230 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.591 | 0.506 | 0.397 | 6.1e-229 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.468 | 0.382 | 0.396 | 1.9e-221 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.468 | 0.387 | 0.403 | 6.3e-219 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.405 | 0.319 | 0.363 | 1.1e-176 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.449 | 0.365 | 0.337 | 7.9e-174 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.465 | 0.378 | 0.343 | 1.5e-172 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2228 (789.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 450/746 (60%), Positives = 543/746 (72%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
DL++LP GD T+IGERGVNLSGGQKQRIQLARALYQD DIYLLDDPFSA+DA TA LF
Sbjct: 708 DLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQ 767
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHK 623
EYVM AL+ K VLLVTHQVDFLPAFDS+LL+S GEI +A TY LL S++FQDLVNAH+
Sbjct: 768 EYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHR 827
Query: 624 ETMGPETFGEHXXXXXXXXXXXXXXXXGHNNTSPADQLIKKEERETGDTGLKPYIDYLSH 683
ET G E P+ +LIK+EERE GDTGL+PYI Y++
Sbjct: 828 ETAGSERVVAVENPTKPVKEINRVISSQSKVLKPS-RLIKQEEREKGDTGLRPYIQYMNQ 886
Query: 684 KKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTR 743
KG+++F +++ A + F V QILQ+ W+A + + +S LKL++VY IG+ + L+ R
Sbjct: 887 NKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVR 946
Query: 744 SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTI 803
S VV + +++S S+F +L++SLFRAPM+FYDSTP+GRILSRV
Sbjct: 947 SVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIF 1006
Query: 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863
V +++ + VL +TWQVL V VPM+YL LQ YYF TAKELMRINGT S +A+
Sbjct: 1007 VVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVAN 1066
Query: 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT 923
HLAE+VAGA+TIRAF EERFF K+L LID AS FFHSF A EWLIQRLET+SAIVLA+
Sbjct: 1067 HLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLAS 1126
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPS 983
+A C LL G +G+ GMALS+GLSLN LVYSV NQC + N I+SVERLNQY +
Sbjct: 1127 TAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTP 1186
Query: 984 EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
EAPE++++ P +WP TG+VEI DLQIRYR +PLVL+GI+CTFEGGHKIG+VGRTGSG
Sbjct: 1187 EAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSG 1246
Query: 1044 KTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLS 1103
KTTLISALFRLVEP GGK +DLRS GIIPQDPTLF+G+VR+NLDPL
Sbjct: 1247 KTTLISALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLC 1306
Query: 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXX 1163
Q +D EIWEV L KCQL+EV+QEK+ GLDSLVV+DG+NWSMGQ
Sbjct: 1307 QHSDAEIWEV------LGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLR 1360
Query: 1164 XXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
DEATASIDNATD ILQ TIRREFA+CTVITVAHRI TVMDC MVLS+SDG++V
Sbjct: 1361 RSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIV 1420
Query: 1224 EYDEPKKLLRRQDSLFAQLVKEYWSH 1249
EYDEP KL++ ++SLF +LVKEYWSH
Sbjct: 1421 EYDEPMKLMKDENSLFGKLVKEYWSH 1446
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 3.9e-251, Sum P(3) = 3.9e-251
Identities = 245/597 (41%), Positives = 348/597 (58%)
Query: 660 QLIKKEERETGDTGLKPYIDYLSHK-KGFLYFTLSTFAYLIFLVAQILQSLWIATYIPST 718
QL+++EER G +K Y+ Y+ KG L L A F QI + W+A P T
Sbjct: 919 QLVQEEERVKGKVSMKVYLSYMGAAYKGAL-IPLIILAQAAFQFLQIASNWWMAWANPQT 977
Query: 719 SISRLK-----LVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAF 773
K L+IVY+ + G + R+ LV GL A++ +F ++ S+FRAPM+F
Sbjct: 978 EGDESKVDPTLLLIVYTALAFGSSVFIFVRAALVATFGLAAAQKLFLNMLRSVFRAPMSF 1037
Query: 774 YDSTPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMI 833
+DSTP GRIL+RV + TT+ + V+ +TWQV L++VP+
Sbjct: 1038 FDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVA 1097
Query: 834 YLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLID 893
+Q YY A+++EL+RI + S + E++AGA TIR F E+RF +NL L+D
Sbjct: 1098 VACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLD 1157
Query: 894 AYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLND 953
+ FF S A EWL R+E LS +V A + G G+A+++GL+LN
Sbjct: 1158 CFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNG 1217
Query: 954 FLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRY 1013
L + + C + N I+S+ER+ QY +I EAP +++ P WP TG +E+ D+++RY
Sbjct: 1218 RLSRWILSFCKLENKIISIERIYQYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRY 1277
Query: 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXX 1073
N P VL G++C F GG KIG+VGRTGSGK+TLI ALFRL+EPT GK
Sbjct: 1278 AENLPTVLHGVSCVFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIG 1337
Query: 1074 XYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+DLRS LGIIPQDPTLF G++R NLDPL + +D +IWE L+K QL +V++ K
Sbjct: 1338 LHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEA------LDKSQLGDVVRGKD 1391
Query: 1134 EGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREF 1193
LDS V+++G NWS+GQ DEATAS+D ATD+++Q IR EF
Sbjct: 1392 LKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEF 1451
Query: 1194 ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
+CTV T+AHRI TV+D ++VL +SDG++ E+D P +LL + S+F +LV EY S +
Sbjct: 1452 EDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSSRS 1508
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 6.7e-245, Sum P(3) = 6.7e-245
Identities = 243/603 (40%), Positives = 359/603 (59%)
Query: 654 NTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIAT 713
+ P Q+I++EERE G L Y Y++ G ++F + QI + W+A
Sbjct: 914 SVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAW 973
Query: 714 YIP-STSIS---RLK-LVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFR 768
P S + +L L+IVY + G +L R+ L+V G + + +F+K+ +FR
Sbjct: 974 ATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFR 1033
Query: 769 APMAFYDSTPVGRILSRVXXXXXXXXXXXXXK-STIAVGTTMAVISTFVVLGALTWQVLL 827
+PM+F+DSTP GRI+SR + ++A+ T + +I V+ ++W V L
Sbjct: 1034 SPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAI-TVIQLIGIIGVMSQVSWLVFL 1092
Query: 828 VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAK 887
V +P++ I Q YY A A+EL R+ G + L H +ET++GA TIR+F E RF +
Sbjct: 1093 VFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSD 1152
Query: 888 NLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSF 947
N+ L D Y+ F++ A EWL RL+ LS++ S + + G G+A+++
Sbjct: 1153 NMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLAGLAVTY 1212
Query: 948 GLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIY 1007
GLSLN + + C + N I+SVER+ QY +PSE P +++ N P WP G+VEI
Sbjct: 1213 GLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIR 1272
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXX 1067
DLQ+RY P+ PLVLRGITCTF+GG + G+VGRTGSGK+TLI LFR+VEP+ G+
Sbjct: 1273 DLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIRIDGV 1332
Query: 1068 XXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
+DLR L IIPQDPT+F G++R NLDPL ++TD +IWE L+KCQL +
Sbjct: 1333 NILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEA------LDKCQLGD 1386
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQN 1187
+++K++ LDS V ++G NWSMGQ DEATAS+D ATD+++Q
Sbjct: 1387 EVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQK 1446
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247
T+R F++CTVIT+AHRI++V+D +MVL +S+G + EYD P +LL + S F++LV EY
Sbjct: 1447 TLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYT 1506
Query: 1248 SHA 1250
S +
Sbjct: 1507 SRS 1509
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 1.6e-230, Sum P(2) = 1.6e-230
Identities = 299/760 (39%), Positives = 437/760 (57%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
DL++ PF D T IGERG+NLSGGQKQRIQ+ARALYQD DIYL DDPFSA+DA T LF
Sbjct: 730 DLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 789
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHK 623
E ++G L KTV+ VTHQ++FLP D IL++ G I QA Y+ +L + +F +LV AH
Sbjct: 790 EVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHT 849
Query: 624 ETMGPETFGEHXXXXXXXXXXXXXXXXGHNNT------SPADQLIKKEERETGDTGLKPY 677
+ + E SP QL+++EERE G G Y
Sbjct: 850 DALAAVDSYEKGSASAQSTTSKESKVSNDEEKQEEDLPSPKGQLVQEEEREKGKVGFTVY 909
Query: 678 IDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTS-----ISRLKLVIVYSGI 732
Y+ G + ++F V I + W+A P + +S L++VY +
Sbjct: 910 QKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFL 969
Query: 733 GIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVXXXXXX 792
F +L R+ L G + + +F ++ +FRA M+F+D+TP+GRIL+R
Sbjct: 970 ATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSA 1029
Query: 793 XXXXXXXK-STIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELM 851
+ S +A+ + ++ V+G + WQVL+V +P+I + YY + A+EL
Sbjct: 1030 VDLRLPSQFSNLAIAA-VNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELA 1088
Query: 852 RINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQ 911
R++G S L H +ET++G TIR+F E RF + L D Y+ FH+ +A EWL
Sbjct: 1089 RLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCF 1148
Query: 912 RLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVS 971
RL+ LS + A S + + +G + G+A+++ L+LN + C + N ++S
Sbjct: 1149 RLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMIS 1208
Query: 972 VERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGG 1031
VER+ QY+ IPSE +++ P WP G++ I +LQ+RY P+ P+VLRG+TCTF GG
Sbjct: 1209 VERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGG 1268
Query: 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLF 1091
K G+VGRTG GK+TLI LFR+VEP G+ +DLRS L IIPQ+PT+F
Sbjct: 1269 LKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMF 1328
Query: 1092 SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151
G+VR NLDPL ++ D +IWE L+KCQL + I++K+ LDS V ++G NWS+GQ
Sbjct: 1329 EGTVRSNLDPLEEYADDQIWEA------LDKCQLGDEIRKKELKLDSPVSENGQNWSVGQ 1382
Query: 1152 XXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDC 1211
DEATAS+D ATD+++Q T+R+ F+ CTVIT+AHRI++V+D
Sbjct: 1383 RQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDS 1442
Query: 1212 NMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAE 1251
+MVL + G + E+D P +LL + S F++LV EY + ++
Sbjct: 1443 DMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSD 1482
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1443 (513.0 bits), Expect = 6.1e-229, Sum P(2) = 6.1e-229
Identities = 302/760 (39%), Positives = 434/760 (57%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
DL++LPF D T IGERG+NLSGGQKQRIQ+ARALYQD DIYL DDPFSA+DA T LF
Sbjct: 707 DLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 766
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHK 623
E ++G L KTV+ VTHQV+FLP D IL++ G+I QA Y +L + +F +LV AH
Sbjct: 767 EVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHT 826
Query: 624 ETMGPETFGEHXXXXXXXXXXXXXXXXGH-------NNTSPADQLIKKEERETGDTGLKP 676
E + E H ++ P+ QL+++EERE G G
Sbjct: 827 EALATIDSCETGYASEKSTTDKENEVLHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTV 886
Query: 677 YIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTS-----ISRLKLVIVYSG 731
Y Y++ G L ++F + I + W+ P + +S L++VY
Sbjct: 887 YKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVL 946
Query: 732 IGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVXXXXX 791
+ + F +L R+ LV G + + +F ++ +FRA M+F+D+TP+GRIL+R
Sbjct: 947 LAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQS 1006
Query: 792 XXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELM 851
+ + ++ V+ + WQVL+V +P++ + YY + A+EL
Sbjct: 1007 VADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELA 1066
Query: 852 RINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQ 911
R+ G S + H +ET++G TIR+F E RF + L D Y+ FHS A EWL
Sbjct: 1067 RLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCF 1126
Query: 912 RLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVS 971
RLE LS A+S + +G G+A+++ L+LN + C + N ++S
Sbjct: 1127 RLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMIS 1186
Query: 972 VERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGG 1031
VER+ QY IPSE P +++ P WP G++ I +LQ+RY P+ P+VL G+TCTF GG
Sbjct: 1187 VERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGG 1246
Query: 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQDPTLF 1091
K G+VGRTG GK+TLI LFR+VEP G+ +DLRS L IIPQDPT+F
Sbjct: 1247 LKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMF 1306
Query: 1092 SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151
G++R NLDPL ++TD +IWE L+ CQL + +++K+ LDS V ++G NWS+GQ
Sbjct: 1307 EGTIRSNLDPLEEYTDDQIWEA------LDNCQLGDEVRKKELKLDSPVSENGQNWSVGQ 1360
Query: 1152 XXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDC 1211
DEATASID ATD+++Q T+R FA+CTVIT+AHRI++V+D
Sbjct: 1361 RQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDS 1420
Query: 1212 NMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAE 1251
+MVL + G + E+D P +LL + SLF++LV EY + +E
Sbjct: 1421 DMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSE 1460
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.9e-221, Sum P(3) = 1.9e-221
Identities = 238/600 (39%), Positives = 349/600 (58%)
Query: 651 GHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLW 710
G N +LIK+EERE G + Y Y + G+ L F + + + + W
Sbjct: 941 GSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYW 1000
Query: 711 IATYIPST----SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSL 766
+A Y S S + VY I + L+ R+F V +LGL+ ++ F ++++SL
Sbjct: 1001 LA-YETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSL 1059
Query: 767 FRAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVL 826
APM+F+D+TP GRILSR + ++S F+V W +
Sbjct: 1060 VHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTV 1119
Query: 827 LVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFA 886
I+P+ +L I + YY A+++EL R++ + + H +E++AG MTIRAF+ + F
Sbjct: 1120 FFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQ 1179
Query: 887 KNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALS 946
+N+ ++A FH+ + EWL RLE + + VL SAL +L G++LS
Sbjct: 1180 ENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLS 1239
Query: 947 FGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEI 1006
+GLSLN L +++ C + N +VSVER+ Q+ IP+EA ++++ P P+WP G + +
Sbjct: 1240 YGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRL 1299
Query: 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXX 1066
D+++RYRPN PLVL+G+T +GG KIGVVGRTGSGK+TLI LFRLVEP+GGK
Sbjct: 1300 EDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDG 1359
Query: 1067 XXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLR 1126
+DLRS GIIPQ+P LF G+VR N+DP +++D+EIW+ LE+CQL+
Sbjct: 1360 IDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKS------LERCQLK 1413
Query: 1127 EVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQ 1186
+V+ K E LDSLV +G NWS+GQ DEATAS+D+ TD+++Q
Sbjct: 1414 DVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQ 1473
Query: 1187 NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
IR +F++CT+I++AHRI TVMDC+ VL + GK EYD P +LL RQ SLFA LV+EY
Sbjct: 1474 KIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ-SLFAALVQEY 1532
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 6.3e-219, Sum P(3) = 6.3e-219
Identities = 242/600 (40%), Positives = 351/600 (58%)
Query: 651 GHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLW 710
G + +LIK+EERETG L Y Y + G+ L F L + + + W
Sbjct: 918 GSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYW 977
Query: 711 IATYIPST--SISRLKLVIVYSGIGIGMMFLLLT--RSFLVVYLGLEASESIFYKLMSSL 766
+A Y S +IS V + + I ++ ++L RS+ V +LGL+ ++ F ++++S+
Sbjct: 978 LA-YETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSI 1036
Query: 767 FRAPMAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVL 826
APM+F+D+TP GRILSR + V ++S F+V W
Sbjct: 1037 LHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTA 1096
Query: 827 LVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFA 886
++P+ +L I +NYY A+++EL R++ + + H +E++AG MTIR+F+ +E F
Sbjct: 1097 FFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQ 1156
Query: 887 KNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALS 946
+N+ ++ FH+ + EWL RLE + + VL SAL LL G++LS
Sbjct: 1157 ENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLS 1216
Query: 947 FGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEI 1006
+GLSLN L +++ C V N +VSVER+ Q+ IPSE+ ++ P +WP G V +
Sbjct: 1217 YGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHL 1276
Query: 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXX 1066
DL++RYRPN PLVL+GIT +GG K+GVVGRTGSGK+TLI LFRLVEP+GGK
Sbjct: 1277 EDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDG 1336
Query: 1067 XXXXXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLR 1126
+DLRS GIIPQ+P LF G+VR N+DP Q++D+EIW+ LE+CQL+
Sbjct: 1337 IDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKS------LERCQLK 1390
Query: 1127 EVIQEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQ 1186
+V+ K E LDSLVV +G NWS+GQ DEATAS+D+ TD+++Q
Sbjct: 1391 DVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQ 1450
Query: 1187 NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
IR +FA+CT+I++AHRI TVMD + VL + GK E+D P +LL R SLFA LV+EY
Sbjct: 1451 KIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLERP-SLFAALVQEY 1509
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 1.1e-176, Sum P(3) = 1.1e-176
Identities = 188/517 (36%), Positives = 294/517 (56%)
Query: 728 VYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVX 787
+Y G + RSF +V+ ++ S+ K+ ++ +PM+F+D+TP+GRIL+R
Sbjct: 1070 IYVAFSCGTIAATFLRSFSMVFGSIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNRFS 1129
Query: 788 XXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATA 847
+ + T V+ + +V+ ++ ++L +VP+ L +Q YY ++
Sbjct: 1130 KDQLTIDESIARTLGMFLNTFCQVVGSIIVIAWVSPFIILAMVPVGALFYFIQKYYLNSS 1189
Query: 848 KELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907
+EL R+ G S + +H +ET+AG TIRAF++ RF +N L+D ++ + ++
Sbjct: 1190 RELTRLEGVSRSPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINISSNR 1249
Query: 908 WLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGN 967
WL RLE L A L + A+ T+L + AG G+ +++ L++ + + V C + N
Sbjct: 1250 WLAIRLEFLGAC-LVSCAVLYTVLARSRIEAGTAGLVITYALAITGNMNWMVRMSCDLEN 1308
Query: 968 LIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCT 1027
+VS+ER+ +Y +PSEAP K+ P WP GK+ +L + YR VLRGI CT
Sbjct: 1309 SVVSIERIQEYCLLPSEAPLFNDKSVPM-SWPSHGKIVFKNLWLTYREGLDPVLRGINCT 1367
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXXXXXXYDLRSNLGIIPQD 1087
E K+G+VGRTG+GK++L ALFRLVEP G LRS + IIPQD
Sbjct: 1368 IEPKTKVGIVGRTGAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSRMAIIPQD 1427
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
P LF+GSVRYNLDP Q+ D EIWE +E L + I++ GLD++V G N+
Sbjct: 1428 PVLFAGSVRYNLDPFDQYDDHEIWEA------IENAHLLKAIKDLDGGLDAMVQDGGDNF 1481
Query: 1148 SMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIRREFANCTVITVAHRIAT 1207
S+GQ DEA++SID A+D+++Q TIR +FA+CTV+T+AHR+ T
Sbjct: 1482 SVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLGT 1541
Query: 1208 VMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
+ D + ++ + G+L+EYD P +LL+ QDS++ LVK
Sbjct: 1542 IADSDKIMVLDKGELIEYDSPSELLKNQDSIYYSLVK 1578
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 7.9e-174, Sum P(5) = 7.9e-174
Identities = 197/584 (33%), Positives = 320/584 (54%)
Query: 660 QLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTS 719
+LIKKE +TG Y+ YL G+ ++I+ VA I +LW++ + +
Sbjct: 948 KLIKKEFVQTGKVKFSIYLKYLQ-AIGWCSIVFILLGFVIYYVAFIGSNLWLSAWTSDSK 1006
Query: 720 I--------SRLKLVI-VYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYK-LMSSLFRA 769
I S+ L + VY +G+ + + VY G + +I +K L++++ RA
Sbjct: 1007 IYNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVY-GCNHASNILHKQLLNNILRA 1065
Query: 770 PMAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVI 829
PM+F+D+TP+GRI++R V + +IST V++ T ++VI
Sbjct: 1066 PMSFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVI 1125
Query: 830 VPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNL 889
+P+ + + +Q +Y AT+++L R++ S + SH +ETV+G IRAF++++RF ++
Sbjct: 1126 IPLGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSE 1185
Query: 890 DLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGL 949
ID F T+ WL RLE + +++ ++L ++++ + G LS L
Sbjct: 1186 TAIDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMM-VIYRNNLSGDTVGFVLSNAL 1244
Query: 950 SLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDL 1009
++ L + V + IV+VER+ +Y+ + +EAP + K P WP G+++ +
Sbjct: 1245 NITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDKRPPE-GWPSKGEIQFSNY 1303
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXX 1069
Q+RYRP LVL+GITC + KIGVVGRTG+GK++L + LFR++E GG+
Sbjct: 1304 QVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGVDI 1363
Query: 1070 XXXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVI 1129
+DLR L IIPQDP LFSGS+R NLDP + ++D+EIW+ LE L+ +
Sbjct: 1364 ASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKA------LELSHLKSFV 1417
Query: 1130 QEKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTI 1189
+ GL V + G N S+GQ DEATA++D TD ++Q TI
Sbjct: 1418 AGLQAGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTI 1477
Query: 1190 RREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
+ EF++CT IT+AHR+ T+MD + V+ + GK+VEYD P++LL+
Sbjct: 1478 QTEFSHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLK 1521
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.5e-172, Sum P(5) = 1.5e-172
Identities = 207/603 (34%), Positives = 327/603 (54%)
Query: 660 QLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPST- 718
+LIKKE ETG Y+ YL G+ Y++ VA I +LW++ + +
Sbjct: 948 KLIKKEFVETGKVKFSIYLKYLQ-AVGWWSLLFIVIFYVLNYVAFIGTNLWLSAWTSDSE 1006
Query: 719 -------SISRLKLVI-VYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAP 770
S S+ + I V+ +GI LL+ S +Y AS+++ +L++++ RAP
Sbjct: 1007 KQNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAP 1066
Query: 771 MAFYDSTPVGRILSRVXXXXXXXXXXXXXKSTIAVGTTMAVISTFVVLGALTWQVLLVIV 830
M+F+D+TP GRI++R + ++ST V++ T +++I+
Sbjct: 1067 MSFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIII 1126
Query: 831 PMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLD 890
P+ L + +Q +Y AT+++L R++ S + SH +ETV+G IRAF++++RF A +
Sbjct: 1127 PLSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEK 1186
Query: 891 LIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLS 950
ID F T+ WL RLE + +++ SAL +++K G LS L+
Sbjct: 1187 QIDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLL-VIYKNSLTGDTVGFVLSNALN 1245
Query: 951 LNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQ 1010
+ L + V V IV+VER+N+Y+ + +EAP + K PA DWP G+++ + Q
Sbjct: 1246 ITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDKKPPA-DWPKKGEIQFNNYQ 1304
Query: 1011 IRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKXXXXXXXXX 1070
+RYRP LVL+GITC + K+GVVGRTG+GK++L + LFR++E GG+
Sbjct: 1305 VRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDIA 1364
Query: 1071 XXXXYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
+DLR L IIPQDP LFSG++R NLDP ++++D+EIW + LE L+ +
Sbjct: 1365 SIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIW------RALELAHLKSFVA 1418
Query: 1131 EKKEGLDSLVVQDGANWSMGQXXXXXXXXXXXXXXXXXXXDEATASIDNATDSILQNTIR 1190
+ GL V + G N S+GQ DEATA++D TDS++Q TIR
Sbjct: 1419 GLQLGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIR 1478
Query: 1191 REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250
EF+ CTVIT+AHR+ T+MD + ++ + GK+VEY P++LL + + KE +
Sbjct: 1479 NEFSQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGPFYL-MAKEAGIES 1537
Query: 1251 EKH 1253
H
Sbjct: 1538 VNH 1540
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9P5N0 | ABC3_SCHPO | No assigned EC number | 0.3070 | 0.9386 | 0.8040 | yes | no |
| Q9LYS2 | AB10C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.5808 | 0.9752 | 0.8423 | yes | no |
| Q54U44 | ABCCC_DICDI | No assigned EC number | 0.3133 | 0.9362 | 0.8881 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1255 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-131 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-117 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-88 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-82 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-79 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-76 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-74 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-62 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-56 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-53 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-53 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-50 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-50 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-50 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-49 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-48 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-47 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-47 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-47 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-47 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-46 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-45 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-45 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-45 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-45 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-45 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-42 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-39 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-37 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-37 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-36 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-35 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-35 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-34 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-34 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-32 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-31 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-30 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-29 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-29 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-28 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-28 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-27 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-27 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-27 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-26 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-24 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-24 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-24 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-24 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-23 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-23 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-22 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-22 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-22 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-20 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-20 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-20 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-18 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-18 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-17 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-17 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-17 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-17 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-17 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-17 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 9e-17 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-16 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-16 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-15 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-15 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-15 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-15 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-15 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-15 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-15 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-14 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-14 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-14 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-14 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-13 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-13 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-13 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-13 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-13 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-13 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-12 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-12 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-12 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-12 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-12 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-12 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-11 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-11 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-11 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-11 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 9e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-10 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-10 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-09 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-09 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 7e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-08 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-08 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-07 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-07 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-07 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-07 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-07 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-06 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 1e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-06 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-06 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-06 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 9e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-05 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 4e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-05 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-05 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-05 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-04 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-04 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-04 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-04 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-04 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-04 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 5e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-04 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 0.001 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.001 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.001 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.001 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 0.002 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.002 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.002 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.003 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.003 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 0.004 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.004 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.004 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 767 bits (1983), Expect = 0.0
Identities = 427/1301 (32%), Positives = 696/1301 (53%), Gaps = 101/1301 (7%)
Query: 20 DLDEQNDALYSPLRREEIDANEDDD--DGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKV 77
+LD Y+P+ E +D E ++ G+ + P A + +I F W+ PLM+ G +
Sbjct: 197 NLDPYPG--YTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRP 254
Query: 78 LEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFAL 137
L + DV +L D+ T Y F + W+++ P +LRAL + GFF +
Sbjct: 255 LTEKDVWKLDTWDQTETLYRSFQKC---WDEELKKPKPWLLRALNNSLGGRFWLGGFFKI 311
Query: 138 IKVISISAGPLFLKAFI-SAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTG 196
+S GPL L + S GE + IY A S+F+ + L +F G
Sbjct: 312 GNDLSQFVGPLLLNLLLESMQNGEPAWIGYIY--AFSIFVGVVLGVLCEAQYFQNVMRVG 369
Query: 197 LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLC 256
++RS+L AA+ K LRL++ + TSG I N +T DA + + H +WS ++
Sbjct: 370 FRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRII 429
Query: 257 IAVVVVYYSVGLATI-ATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVN 315
IA+V++Y +G+A++ +L+++++ + ++K+Q +E + +KR+ + EVL
Sbjct: 430 IAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEG-LQRTDKRIGLMNEVLAA 488
Query: 316 MKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFL 375
M +K YAW++ F++ ++ +R +E W + QL + + S P+L+ + L
Sbjct: 489 MDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL 548
Query: 376 GIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE---LQNSDM 432
G L P+ FT L+ +L+ P+ +LP++ + A VSL R+ L A E L N +
Sbjct: 549 GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPL 608
Query: 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAA 492
+ +I IK+ SW++ PTL NINL+V AI G G GK++L++A
Sbjct: 609 EPG------LPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISA 662
Query: 493 ILGELPRLQGM------------------------------------------------D 504
+LGELP D
Sbjct: 663 MLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD 722
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
L +LP GDLT+IGERGVN+SGGQKQR+ +ARA+Y + D+Y+ DDP SALDA + +F +
Sbjct: 723 LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDK 782
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV-NAHK 623
+ L KT +LVT+Q+ FL D I+L+ G I + TY+ L FQ L+ NA K
Sbjct: 783 CIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGK 842
Query: 624 ETMGPETFGEHVSSKEDENEVKKVEDEGHNNTSPADQ------------LIKKEERETGD 671
E + E +ED+ K G+ N D LIK+EERETG
Sbjct: 843 M----EEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGV 898
Query: 672 TGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISR---LKLVIV 728
K Y + G + Y++ V ++ S W++ + + L ++
Sbjct: 899 VSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLI 958
Query: 729 YSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSS 788
Y+ + G + + L S+ ++ L A++ + ++ S+ RAPM+F+ + P+GRI++R +
Sbjct: 959 YALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018
Query: 789 DLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAK 848
DL ID ++++ + +G ++STFV++G ++ L I+P++ L YY +TA+
Sbjct: 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAR 1078
Query: 849 ELMRING-TRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907
E+ R++ TRS + A E + G TIRA++ +R N +D + ++
Sbjct: 1079 EVKRLDSITRSPVYA-QFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137
Query: 908 WLIQRLETLSAIVL---ATSALCTTLLHKGHKG-AGYTGMALSFGLSLNDFLVYSVNNQC 963
WL RLETL +++ A+ A+ + A G+ LS+ L++ L +
Sbjct: 1138 WLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLAS 1197
Query: 964 IVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRG 1023
+ N + +VER+ Y+ +PSEAP +++ N P P WP +G ++ D+ +RYRP P VL G
Sbjct: 1198 LAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1257
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083
++ K+G+VGRTG+GK+++++ALFR+VE G+I+IDG DI+ GL DLR LGI
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317
Query: 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143
IPQ P LFSG+VR+NLDP ++ D ++WE LE+ L++VI+ GLD+ V +
Sbjct: 1318 IPQAPVLFSGTVRFNLDPFNEHNDADLWE------SLERAHLKDVIRRNSLGLDAEVSEA 1371
Query: 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
G N+S+GQRQL+ L R +LRR +ILVLDEATA++D TD+++Q TIR EF +CT++ +AH
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 1431
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
R+ T++DC+ +L + G++VE+D P+ LL + S F+++V+
Sbjct: 1432 RLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 704 bits (1818), Expect = 0.0
Identities = 412/1339 (30%), Positives = 675/1339 (50%), Gaps = 166/1339 (12%)
Query: 51 PFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQ-- 108
P A L +ITFWW+ + G + LE+ D+ L D + + + +W +
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL---VENWKKEC 259
Query: 109 -------------------------------------KRPSA--HPSILRALISCHWKSI 129
K P PS+ + L
Sbjct: 260 KKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYF 319
Query: 130 LFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWF 189
L S F I + + GP L I + ++ Y LF+ C+++L +F
Sbjct: 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYF 379
Query: 190 FQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIW 249
++G++I++++ A+ K L ++N+A+ T G+IVN ++VDA R + + + IW
Sbjct: 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439
Query: 250 STSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAI 309
S LQ+ +A+ ++ ++G + +A + VM+L V N+ +A YQ M +++ R+K +
Sbjct: 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLM 499
Query: 310 TEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYM----VLFW-SSPILI 364
E+L +KVLKLYAW+ F + +E +R EE LKVL+ K Y+ W +P L+
Sbjct: 500 NEILNGIKVLKLYAWELAFLDKVEGIRQEE---LKVLK--KSAYLHAVGTFTWVCTPFLV 554
Query: 365 GAATLLTCYFLGIPLNPSNV------FTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRI 418
T + + ++ +N+ F LA IL+ P+ +LP V + ++A VSL R+
Sbjct: 555 ALITF----AVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRL 610
Query: 419 ANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAI 478
FL EL+ +++ + +SI + +A +W DL PTL I + A+
Sbjct: 611 RIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDL-PPTLNGITFSIPEGALVAV 669
Query: 479 CGEVGAGKSTLLAAILGELPRLQGM----------------------------------- 503
G+VG GKS+LL+A+L E+ +++G
Sbjct: 670 VGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729
Query: 504 ------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551
DL++LP GD T+IGE+GVNLSGGQKQR+ LARA+Y + DIYL DDP S
Sbjct: 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
Query: 552 ALDAKTAKFLFTEYV--MGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
A+DA K +F + G L KT +LVTH + +LP D I+++SGG+I + +Y LL
Sbjct: 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL 849
Query: 610 VTSQEFQDLV----NAHKETMGPETFGEHVSSKEDE-----------------------N 642
F + + ++ +++ VS + E
Sbjct: 850 QRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSA 909
Query: 643 EVKKVEDEGHNNTSPAD-----------QLIKKEERETGDTGLKPYIDYLSHKKGFLYFT 691
D+ ++ S A+ +L++ ++ +TG L Y DY+ F+ F
Sbjct: 910 SSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITF- 968
Query: 692 LSTFAYLIFLVAQILQSLWIATY-----IPSTSISRLKLVIVYSGIGIGMMFLLLTRSFL 746
LS F ++ V+ + + W++ + + T + + VY +GI F + S
Sbjct: 969 LSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMA 1028
Query: 747 VVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVG 806
V G++AS + L+ + R+PM+F++ TP G +++R S +L +D + + +G
Sbjct: 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088
Query: 807 TTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLA 866
+ VI +V+ T ++I P+ L +Q +Y A++++L R+ S + SH
Sbjct: 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1148
Query: 867 ETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSAL 926
ET+ G IRAF+ +ERF ++ +D +++ S A WL RLE + ++ +AL
Sbjct: 1149 ETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1208
Query: 927 CTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAP 986
++ + AG G+++S+ L + +L + V + IV+VERL +Y EAP
Sbjct: 1209 -FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267
Query: 987 ELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTT 1046
+Q+ +P WPP G+VE + +RYR + LVLR I T GG K+G+VGRTG+GK++
Sbjct: 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSS 1327
Query: 1047 LISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFT 1106
L LFR+ E G+IIIDGL+I IGL+DLR + IIPQDP LFSGS+R NLDP SQ++
Sbjct: 1328 LTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS 1387
Query: 1107 DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166
D+E+W LE L+ + + LD + G N S+GQRQL+ L R +LR+ +
Sbjct: 1388 DEEVW------WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441
Query: 1167 ILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226
ILVLDEATA++D TD+++Q+TIR +F +CTV+T+AHR+ T+MD V+ + G++ E+
Sbjct: 1442 ILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFG 1501
Query: 1227 EPKKLLRRQDSLFAQLVKE 1245
P LL +Q +F + K+
Sbjct: 1502 APSNLL-QQRGIFYSMAKD 1519
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 696 bits (1798), Expect = 0.0
Identities = 410/1283 (31%), Positives = 667/1283 (51%), Gaps = 86/1283 (6%)
Query: 29 YSPLRREEIDANEDD--DDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQL 86
Y L E +D E D G+++ P A + +I F W+ PLM+ G K + + DV QL
Sbjct: 204 YHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQL 263
Query: 87 RLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVISISAG 146
D+ T F W ++ P +LRAL + G F + +S G
Sbjct: 264 DQWDQTETLIKRF---QRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVG 320
Query: 147 PLFLKAFI-SAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCA 205
P+ L + S EG+ + +Y+ I F L +F G ++RS+L A
Sbjct: 321 PVILSHLLQSMQEGDPAWVGYVYAFLI--FFGVTFGVLCESQYFQNVGRVGFRLRSTLVA 378
Query: 206 AISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYS 265
AI K LRL++ A+ SG + N +T DA + + H +WS ++ +++V++Y
Sbjct: 379 AIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQ 438
Query: 266 VGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWD 325
+G+A++ +++ L + + + + K + + +KR+ I E+L +M +K YAW+
Sbjct: 439 LGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWE 498
Query: 326 SYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVF 385
F++ I+ +R+EE W + QL + + S P+++ + LG L P+ F
Sbjct: 499 KSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAF 558
Query: 386 TFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE---LQNSDMQQVCSRAELE 442
T L+ +L+ P+ +LP++ + A VSL RI L + E QN +Q
Sbjct: 559 TSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP----- 613
Query: 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
+I IK+ SW++ PTL +INLE+ AI G G GK++L++A+LGEL +
Sbjct: 614 -AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET 672
Query: 503 M------------------------------------------------DLKMLPFGDLT 514
DL +LP DLT
Sbjct: 673 SSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
+IGERGVN+SGGQKQR+ +ARA+Y + DIY+ DDP SALDA A +F + L KT
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKT 792
Query: 575 VLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV-NAHK--ETMGPETF 631
+LVT+Q+ FLP D I+L+S G I + T+ L + F+ L+ NA K T T
Sbjct: 793 RVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTN 852
Query: 632 GEHVSSKEDENEVKKVEDEGHNNTSPADQ----LIKKEERETGDTGLKPYIDYLSHKKGF 687
E++ + V + +T + L+K+EERETG + Y G
Sbjct: 853 DENILKLGPTVTID-VSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGL 911
Query: 688 LYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLK---LVIVYSGIGIGMMFLLLTRS 744
+ YL V ++ S W++ + ++ ++VY+ +G G + + T S
Sbjct: 912 WVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNS 971
Query: 745 FLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIA 804
F ++ L A++ + +++S+ RAPM F+ + P GR+++R S D+ ID +++ +
Sbjct: 972 FWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMF 1031
Query: 805 VGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASH 864
+ ++STF ++G ++ L I+P++ L YY +T++E+ R++ S + +
Sbjct: 1032 MNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQ 1091
Query: 865 LAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS 924
E + G +IRA++ +R N +D + ++ WL RLETL +++ +
Sbjct: 1092 FGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLT 1151
Query: 925 ALCTTLLH---KGHKG-AGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR 980
A L + + G A G+ LS+ L++ L + N + SVER+ Y+
Sbjct: 1152 ATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211
Query: 981 IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRT 1040
+PSEA +++ N P WP G ++ D+ +RYRP P VL G++ K+GVVGRT
Sbjct: 1212 LPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRT 1271
Query: 1041 GSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD 1100
G+GK+++++ALFR+VE G+I+ID D+ GL DLR L IIPQ P LFSG+VR+N+D
Sbjct: 1272 GAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID 1331
Query: 1101 PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160
P S+ D ++WE LE+ +++VI GLD+ V + G N+S+GQRQL+ L R
Sbjct: 1332 PFSEHNDADLWE------ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385
Query: 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDG 1220
+LRR +ILVLDEATAS+D TDS++Q TIR EF +CT++ +AHR+ T++DC+ +L +S G
Sbjct: 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445
Query: 1221 KLVEYDEPKKLLRRQDSLFAQLV 1243
+++EYD P++LL R S F ++V
Sbjct: 1446 QVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 440 bits (1133), Expect = e-131
Identities = 275/891 (30%), Positives = 426/891 (47%), Gaps = 109/891 (12%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL------------------------- 497
LR++++ V + + G G+GKSTLL ++L +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 498 --------------PRLQGM--------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLAR 535
RL DL L G T+IGE+GVNLSGGQK R+ LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 536 ALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLIS 595
A+Y +RD+YLLDDP SALDA + + E +GAL+ KT +L THQV +P D ++ +
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 596 GGEIIQAATYDHLLVTS---------QEFQDLVN--AHKETMGPET---FGEHVSSKEDE 641
G + + + + TS +E +D A E + +
Sbjct: 856 DGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAK 915
Query: 642 NEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLS-----HKKGFLYFTLSTFA 696
E +G + A +L+ +EE+ +G Y+ YL H GF+ T +
Sbjct: 916 QEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFA-VT 974
Query: 697 YLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASE 756
L+ + + + S+W S +S + VY GI + F + R FL S
Sbjct: 975 ELVTVSSGVWLSMWSTR---SFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSR 1031
Query: 757 SIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFV 816
++ L+ S+ R M+F+D+TP+GRIL+R S D+ I+D L + + ++ S+ +
Sbjct: 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091
Query: 817 VLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIR 876
V A VL+ +VP YL L +Y + +E+ RI S + + L E + G+ TI
Sbjct: 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATIT 1151
Query: 877 AFQNEERFFAKNLDLID-AYASSFFHSFTAREWLIQRLETLSAIVLATSALC---TTLLH 932
A+ + L +D Y+ S+ + R WL R+E LS IV+ AL T+L
Sbjct: 1152 AYGKAHLVMQEALRRLDVVYSCSYLENVANR-WLGVRVEFLSNIVVTVIALIGVIGTMLR 1210
Query: 933 KGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR-IPSEA-PEL-- 988
+ G ++L+ + L + V V + SVERL Y +P E PEL
Sbjct: 1211 ATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270
Query: 989 --------------------VQKNSP---APDWPPTGKVEIYDLQIRYRPNAPLVLRGIT 1025
++ SP AP G + +Q+RYR PLVLRG++
Sbjct: 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330
Query: 1026 CTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085
K+G+VGRTGSGK+TL+ R+VE GG+I ++G +I GL +LR +IP
Sbjct: 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390
Query: 1086 QDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
QDP LF G+VR N+DP + + E+W LE LRE + + EG+DS V++ G+
Sbjct: 1391 QDPVLFDGTVRQNVDPFLEASSAEVW------AALELVGLRERVASESEGIDSRVLEGGS 1444
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVL-DEATASIDNATDSILQNTIRREFANCTVITVAHR 1204
N+S+GQRQL+ + R +L++ +L DEATA+ID A D +Q T+ F+ TVIT+AHR
Sbjct: 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHR 1504
Query: 1205 IATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAEKHLI 1255
+ TV + ++ M G + E P++L+ + S+F +V+ K +
Sbjct: 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFL 1555
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-117
Identities = 116/227 (51%), Positives = 170/227 (74%), Gaps = 6/227 (2%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G +E ++ +RYRPN P VL+ I+ + + G K+G+VGRTGSGK++L+ ALFRLVE + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
I+IDG+DI+ IGL+DLRS + IIPQDP LFSG++R NLDP +++D+E+W Q LE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW------QALE 114
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
+ L+E ++ GLD++V + G N S+GQRQL+ L R +LR+ +ILVLDEATAS+D T
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 1182 DSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228
D+++Q TIR F +CTV+T+AHR+ T++D + +L + G++VE+D P
Sbjct: 175 DALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 297 bits (761), Expect = 4e-88
Identities = 150/573 (26%), Positives = 285/573 (49%), Gaps = 22/573 (3%)
Query: 678 IDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMM 737
+ YL +K L+ L+ + +L L I I + +L+ + + + +
Sbjct: 8 LKYLKYKL----LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLAL 63
Query: 738 FLLLTR---SFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIID 794
+ R S+L LG + + L L R P++F+D G ++SR+++D+ +
Sbjct: 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVS 123
Query: 795 LDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRIN 854
+S + + + +I + V+L +L+W++ L+++ ++ L+ ++ + +++L R
Sbjct: 124 NLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRV 183
Query: 855 GTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLE 914
L + L E+++G I+AF E+R + + + + + L +
Sbjct: 184 REALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLML 243
Query: 915 TLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVE 973
LS++ AL L+ G G + + L L ++ ++ + E
Sbjct: 244 LLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAE 303
Query: 974 RLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHK 1033
RL + + E ++ P P G +E ++ Y P VL+ I+ + E G K
Sbjct: 304 RLFELLDEEPEV-----EDPPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEK 357
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG 1093
+ +VG +GSGK+TLI L RL +PT G+I+IDG+DI I L LR +GI+ QDP LFSG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 1094 SVRYNLDP-LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152
++R N+ TD+EI E L+ E I +G D++V + G N S GQR
Sbjct: 418 TIRENIALGRPDATDEEIEEA------LKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471
Query: 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCN 1212
Q + + R +LR IL+LDEAT+++D T++++Q+ +++ T + +AHR++T+ + +
Sbjct: 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD 531
Query: 1213 MVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245
++ + +G++VE ++LL + L+A+L +
Sbjct: 532 RIIVLDNGRIVERGTHEELLAK-GGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 2e-82
Identities = 115/231 (49%), Positives = 158/231 (68%), Gaps = 24/231 (10%)
Query: 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
WP G++E+ +L +RY P+ P VL+ ++ + G KIG+VGRTG+GK+TLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1058 TGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS 1117
GKI IDG+DI+TI L DLRS+L IIPQDPTLFSG++R NLDP +++D+EI+
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGA---- 116
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
LR V + G N S GQRQL+ L R +L+R ++LVLDEATASI
Sbjct: 117 -------LR-------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
Query: 1178 DNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228
D ATD+++Q TIR EF N T++T+AHR+ T++D + +L M G++ EYD P
Sbjct: 157 DYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 2e-79
Identities = 184/631 (29%), Positives = 321/631 (50%), Gaps = 61/631 (9%)
Query: 664 KEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFL--VAQILQSLWIATYIPS---- 717
+ E T Y+ Y++ + ++ + F +IFL VA L LW+ T PS
Sbjct: 843 ERENVFETTTWNTYLRYITTNRNLVFVLI--FCLVIFLAEVAASLLGLWLITDNPSAPNY 900
Query: 718 -------------------TSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESI 758
T S + +Y G ++ L R +V+ L S+ +
Sbjct: 901 VDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRL 960
Query: 759 FYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVL 818
+++ S+ +APMA ++ GRIL+R + D++IID L + + T+ V+ V+
Sbjct: 961 HEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVV 1020
Query: 819 GALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAF 878
L + + +P+ + I+L+ Y+ T+++L ++ S + SHL ++ G TIRAF
Sbjct: 1021 SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAF 1080
Query: 879 QNE---ERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGH 935
+ E F K L+L + +++F + W R++ + ++
Sbjct: 1081 GRQSYFETLFHKALNL---HTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-- 1135
Query: 936 KGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE-------- 987
G G G+ L+ +++ L ++VN+ V L+ SV R+ +++ +P E P
Sbjct: 1136 DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKY 1195
Query: 988 -----LVQKNSPAPD-WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
LV +N A WP G++++ L +Y VL+ ++ + EGG ++G++GRTG
Sbjct: 1196 QLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTG 1255
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP 1101
SGK+TL+SAL RL+ T G+I IDG+ ++ L R G+IPQ +FSG+ R NLDP
Sbjct: 1256 SGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDP 1314
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
Q++D+EIW+V E+ L+ VI++ + LD ++V G S G +QL+ L R +
Sbjct: 1315 YEQWSDEEIWKVA------EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
L + +IL+LDE +A +D T I++ T+++ F+NCTVI HR+ +++C L +
Sbjct: 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSS 1428
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVKEYWSHAEK 1252
+ +YD +KLL + SLF Q + S A++
Sbjct: 1429 VKQYDSIQKLL-NETSLFKQAM----SAADR 1454
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 4e-76
Identities = 154/597 (25%), Positives = 272/597 (45%), Gaps = 46/597 (7%)
Query: 671 DTGLKPYIDYLSHKKG-FLYFTLSTFAYLIFLVAQILQSLWIA-TYIPSTSISRLKLVIV 728
GL +I L + L++ + +A L S + +P S S L ++
Sbjct: 139 PFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVL-- 196
Query: 729 YSGIGIGMMFLL-----LTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRIL 783
IG+ + L L R++L+ +LG + + L R P+++++ VG I+
Sbjct: 197 --AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEII 254
Query: 784 SRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVL---GALTWQVLLVIVPMIYLIIVLQ 840
SRV I + T+ + A+I V+ LT VL I + + ++ Q
Sbjct: 255 SRVRELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQ 314
Query: 841 NYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFF 900
++L+ S+ S L ET+ G T++A E RF ++ + + + F
Sbjct: 315 PLLRRKTRKLIE----ESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370
Query: 901 HSFTAREWLIQRLETLSAIV-LATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSV 959
+ L L + + L+ +G G ++F L + + +
Sbjct: 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELT---LGQLVAF-NMLAGYFISPI 426
Query: 960 NNQCIVGNLI------VSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRY 1013
+ V++ERL + P E + G++E ++ RY
Sbjct: 427 TR--LSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRY 481
Query: 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073
P+ P VL ++ G K+ +VGR+GSGK+TL+ L L +P G+I++DG+D+ I
Sbjct: 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL---REVIQ 1130
L LR +G + QDP LFSGS+R N+ + E +++E QL E I+
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE--------EIIEAAQLAGAHEFIE 593
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
G D+ V + GAN S GQRQ + L R +L + +IL+LDEAT+++D T++I+ +
Sbjct: 594 NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 1191 REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247
+ TVI +AHR++T+ + ++ + GK+VE ++LL + L+A+L ++
Sbjct: 654 QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG-GLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 5e-74
Identities = 116/243 (47%), Positives = 170/243 (69%), Gaps = 6/243 (2%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G+++I+DL +RY N VL+ + + G K+G+ GRTGSGK++L A FR+V+ GK
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
I+IDG+DI+ + L+ LRS L II QDP LFSGS+R+NLDP + TD +WE LE
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEA------LE 131
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
QL+ +++ GLD++V + G N+S+GQRQL L R +R+ IL++DEATASID AT
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 1182 DSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241
++ILQ + FA+ TV+T+AHR++T++D ++VL +S G LVE D P+ LL ++D +FA
Sbjct: 192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251
Query: 1242 LVK 1244
LV+
Sbjct: 252 LVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 1e-62
Identities = 82/202 (40%), Positives = 111/202 (54%), Gaps = 50/202 (24%)
Query: 447 IKSADLSWEAD--LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM- 503
++ A +W++ + TL++INLEV E AI G VG+GKS+LL+A+LGEL +L G
Sbjct: 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62
Query: 504 ----------------------------------------------DLKMLPFGDLTQIG 517
DL++LP GDLT+IG
Sbjct: 63 SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG 122
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVL 576
E+G+NLSGGQKQRI LARA+Y D DIYLLDDP SA+DA + +F ++G L KT +
Sbjct: 123 EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182
Query: 577 LVTHQVDFLPAFDSILLISGGE 598
LVTHQ+ LP D I+++ G
Sbjct: 183 LVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 2e-56
Identities = 78/231 (33%), Positives = 133/231 (57%), Gaps = 6/231 (2%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G++E ++ Y P VL+ I + + G + +VG TG+GKTTLI+ L R +P G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
I+IDG+DI I LRS +G++ QD LFSG++ N+ E + +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI-----EAAK 114
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
+ + I + G D+++ ++G N S G+RQL+ + R +LR +IL+LDEAT++ID T
Sbjct: 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 1182 DSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+ ++Q + + T I +AHR++T+ + + +L + DGK++E +LL
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-53
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 47/218 (21%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E ++ Y VL+ ++ T + G K+ +VG +GSGK+TL+ L RL +PT G+I+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
IDG+D+ + L LR N+ +PQDP LFSG++R N+ LS
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI--LSG------------------- 99
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
GQRQ I + R +LR IL+LDEAT+++D T++
Sbjct: 100 --------------------------GQRQRIAIARALLRDPPILILDEATSALDPETEA 133
Query: 1184 ILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
++ +R TVI +AHR++T+ D + ++ + DG+
Sbjct: 134 LILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 4e-53
Identities = 93/251 (37%), Positives = 150/251 (59%), Gaps = 12/251 (4%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G++ + DL +Y VL I+ + G ++G++GRTGSGK+TL+SA RL+ T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
I IDG+ ++ L R G+IPQ +FSG+ R NLDP +++D+EIW+V E
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA------E 113
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
+ L+ VI++ LD ++V G S G +QL+ L R VL + +IL+LDE +A +D T
Sbjct: 114 EVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173
Query: 1182 DSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241
+++ T+++ FA+CTVI HRI +++C L + + K+ +YD +KLL + S F Q
Sbjct: 174 YQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQ 232
Query: 1242 LVKEYWSHAEK 1252
+ S +++
Sbjct: 233 AI----SPSDR 239
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-52
Identities = 137/535 (25%), Positives = 246/535 (45%), Gaps = 57/535 (10%)
Query: 734 IGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRVSSD 789
IG+ L SF+ YL S + + +F P++F+D P G +LSR++ D
Sbjct: 61 IGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFD 120
Query: 790 LSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKE 849
+ + + V T+ VI F+VL +WQ+ L++V M+ ++ +L +K
Sbjct: 121 SEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRV---SKR 177
Query: 850 LMRINGTRSSL---LASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAR 906
L RI+ + + + ET+ G ++ F + AY + F + + R
Sbjct: 178 LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQ------------AYETRRFDAVSNR 225
Query: 907 EWLIQ-RLETLSAI------VLATSALCTTLLHKGHK-GAGYT--GMALSFGLSLNDFLV 956
+ ++ + +I ++A+ AL L + AG G +F ++ +
Sbjct: 226 NRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAM--IAL 283
Query: 957 YS-------VNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDL 1009
VN G + + E L + P E + A + G VE ++
Sbjct: 284 IRPLKSLTNVNAPMQRG--LAAAESLFTLLDSPPE----KDTGTRAIE-RARGDVEFRNV 336
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
RY L I+ E G + +VGR+GSGK+TL++ + R EP G+I++DG D+
Sbjct: 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396
Query: 1070 TTIGLYDLRSNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
L LR + ++ QD LF+ ++ N+ Q EI L ++
Sbjct: 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIER------ALAAAYAQD 450
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
+ + GLD+ + ++G S GQRQ + + R +L+ IL+LDEAT+++DN ++ ++Q
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+ R T + +AHR++T+ + ++ M DG++VE +LL R + L+AQL
Sbjct: 511 ALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 3e-50
Identities = 137/594 (23%), Positives = 247/594 (41%), Gaps = 77/594 (12%)
Query: 689 YFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVV 748
+ +S ++ +A I Q+ +A + T + +L + I ++ L+ R+FL
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADIL--TKLIEGQLFQSLLPLLILLLIALVLRAFLAW 58
Query: 749 -------YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIID------L 795
+ S+ ++ L + AF P G + + ++ L
Sbjct: 59 LRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118
Query: 796 DLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRING 855
S I + I F AL +LL+ P+I L ++L AK+
Sbjct: 119 PQMFLSAIVPLLILIAIFFFNWAAAL---ILLITAPLIPLFMILVGL---AAKDASEKQF 172
Query: 856 TRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLET 915
+ + L+ H + + G T+RAF E + + S F T + R+
Sbjct: 173 SALARLSGHFLDRLRGLETLRAFGRTEAT-EERIR----KDSEDFRKATMS---VLRIAF 224
Query: 916 LSAIVL-ATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVE- 973
LS+ VL + L L A Y G L L F V LI++ E
Sbjct: 225 LSSAVLEFFAYLSIAL------VAVYIGFRLLGEGDLTLFAGLFV--------LILAPEF 270
Query: 974 -----RLNQYMR-------------IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYR- 1014
L + E+P + + +EI + +R
Sbjct: 271 FQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY 330
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074
P+ L + T + G +VG +G+GK+TL++ L + PT G+I ++G+D+ +
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 1075 YDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
R + + Q+P LF+G++R N+ P + +D+EI L++ L E +
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLARPDA--SDEEII------AALDQAGLLEFVP- 441
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
K +GLD+++ + GA S GQ Q + L R +L +L+LDE TA +D T+ I+ ++
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
Query: 1192 EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245
TV+ + HR+ D + ++ + +G+LVE ++L +Q L+A L+K+
Sbjct: 502 LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 7e-50
Identities = 78/242 (32%), Positives = 142/242 (58%), Gaps = 13/242 (5%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E ++ Y P P VL+ ++ T G K+ +VG +GSGK+T++ LFR + + G I+
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVL 1120
IDG DI + L LR +G++PQD LF+ ++ YN+ P + TD+E+ E
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDA--TDEEVIEAA------ 111
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
+ Q+ + I +G D++V + G S G++Q + + R +L+ IL+LDEAT+++D
Sbjct: 112 KAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171
Query: 1181 TDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFA 1240
T+ +Q +R T I +AHR++T+++ + ++ + DG++VE ++LL + L+A
Sbjct: 172 TEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG-GLYA 230
Query: 1241 QL 1242
++
Sbjct: 231 EM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 7e-50
Identities = 79/240 (32%), Positives = 133/240 (55%), Gaps = 8/240 (3%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
VE ++ RY + P VLR I+ G + +VG +GSGK+TL++ + R + G+I+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD-PLSQFTDQEIWEVTIPSQVLEK 1122
IDG D+ L LR +G++ QD LF+ +V N+ T +E+ E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEE------AARA 114
Query: 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
E I E EG D+++ + G S GQRQ I + R +L+ IL+LDEAT+++D ++
Sbjct: 115 ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE 174
Query: 1183 SILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
++Q + R N T +AHR++T+ + + ++ + DGK+VE ++LL Q ++A+L
Sbjct: 175 RLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL-AQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-49
Identities = 143/563 (25%), Positives = 257/563 (45%), Gaps = 84/563 (14%)
Query: 718 TSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDST 777
+ L +V + +G R +LV +LG I + + L +F+D
Sbjct: 59 RYFAFLLVVALVLALGTAA------RFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKN 112
Query: 778 PVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVL---------LV 828
G ++SR+++D +++ +S I +MA+ + + +G L + L+
Sbjct: 113 RSGEVVSRLTTDTTLL------QSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166
Query: 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEE----RF 884
VP++ L I+L + ++L R + R + S+ ET+ T++AF +E+ RF
Sbjct: 167 AVPLVLLPILL---FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRF 223
Query: 885 FAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKG-AGYTGM 943
+ AY ++ R L T IVL A+ L H AG
Sbjct: 224 ---GGAVEKAYEAAR-QRIRTRALL-----TAIVIVLVFGAIVGVLWVGAHDVIAG---- 270
Query: 944 ALSFGLSLNDFLVYSVNNQCIVGNLIVSV--------------ERLNQYMRIPSEAPE-L 988
+S G +L F+ Y+V +V I ++ ERL + ++ +
Sbjct: 271 KMSAG-TLGQFVFYAV----MVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325
Query: 989 VQKNSPAPDWPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTT 1046
K P P G++E + Y RP+ P L G+ T G + +VG +G+GK+T
Sbjct: 326 HPKTLPVP---LRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKST 381
Query: 1047 LISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQF- 1105
L L R +P G+I++DG+D+ + +LR+ + ++PQDP LF+ SV N+ ++
Sbjct: 382 LFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI----RYG 437
Query: 1106 ----TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161
TD+E+ + E I EG D+ + + G S GQRQ I + R +
Sbjct: 438 RPDATDEEVEAAARAAHA------HEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491
Query: 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
L+ IL+LDEAT+++D ++ ++Q + T + +AHR+ATV+ + ++ M G+
Sbjct: 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGR 551
Query: 1222 LVEYDEPKKLLRRQDSLFAQLVK 1244
+V +L+ + L+A+L +
Sbjct: 552 IVAQGTHAELI-AKGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 4e-48
Identities = 83/248 (33%), Positives = 149/248 (60%), Gaps = 19/248 (7%)
Query: 1004 VEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+E ++ RY RP+ P +L+G++ T G + +VG +G GK+T++S L R +PT G+
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL-----DPLSQFTDQEIWEVTIP 1116
I++DG+DI + L LRS +G++ Q+P LF G++ N+ D TD+E+ E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAA-- 113
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+K + + I +G D+LV + G+ S GQ+Q I + R +LR +IL+LDEAT++
Sbjct: 114 ----KKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSA 169
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+D ++ ++Q + R T I +AHR++T+ + +++ + +G++VE +L+ Q
Sbjct: 170 LDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM-AQK 228
Query: 1237 SLFAQLVK 1244
++A+LVK
Sbjct: 229 GVYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-47
Identities = 132/499 (26%), Positives = 248/499 (49%), Gaps = 64/499 (12%)
Query: 763 MSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVV-LGAL 821
M + R P++ +D+ PVG+++SRV++D +I DL + V + A+I +V + +L
Sbjct: 105 MDAALRQPLSAFDTQPVGQLISRVTNDTEVIR-DLYVTVVATVLRSAALIGAMLVAMFSL 163
Query: 822 TWQVLLV---IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLA-------ETVAG 871
W++ LV I P + +++V+ Y +R ++LA E + G
Sbjct: 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR----------AYLADINDGFNEVING 213
Query: 872 AMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAR------EWLIQR--LETLSAIVLAT 923
I+ F+ + RF + + +S H + AR + + R L SA++L
Sbjct: 214 MSVIQQFRQQARFGERMGE------ASRSH-YMARMQTLRLDGFLLRPLLSLFSALIL-- 264
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGL-----SLNDFLVYSVNNQCIVGNLIVSVERLNQY 978
C L+ G +G + + + LN+ L+ Q ++ +V+ ER+ +
Sbjct: 265 ---CGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFEL 321
Query: 979 MRIPSEAPELVQKNSPAPDWPP--TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGV 1036
M P + D P +G+++I ++ YR + VL+ I + + +
Sbjct: 322 MDGP--------RQQYGNDDRPLQSGRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFVAL 372
Query: 1037 VGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVR 1096
VG TGSGK+TL S L T G+I +DG ++++ LR + ++ QDP + + +
Sbjct: 373 VGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432
Query: 1097 YNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156
N+ +++++W Q LE QL E+ + +GL + + + G N S+GQ+QL+
Sbjct: 433 ANVTLGRDISEEQVW------QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486
Query: 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLS 1216
L RV+++ QIL+LDEATA+ID+ T+ +Q + + T++ +AHR++T+++ + +L
Sbjct: 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILV 546
Query: 1217 MSDGKLVEYDEPKKLLRRQ 1235
+ G+ VE ++LL Q
Sbjct: 547 LHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 181 bits (463), Expect = 2e-47
Identities = 125/453 (27%), Positives = 209/453 (46%), Gaps = 78/453 (17%)
Query: 809 MAVISTFVVLGALTWQVLLVIVPMIYLI-IVLQNYYFATAKELMRINGTRSSLLASHLAE 867
+ VI ++ G L W V LV +P+I L ++LQ A+E MR S+ + L E
Sbjct: 277 LLVI--AIIGGPLVW-VPLVAIPLILLPGLLLQRPLSRLAEESMR----ESAQRNAVLVE 329
Query: 868 TVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC 927
+++G TI+A E RF + + AR L R LS + +
Sbjct: 330 SLSGLETIKALNAEGRFQRRWEQT---------VAALARSGLKSRF--LSNLATNFAQFI 378
Query: 928 TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCI-VGNLI----------------- 969
L + + G VY +++ + +G LI
Sbjct: 379 QQL--------VSVAIVV-VG-------VYLISDGELTMGGLIACVMLSGRALAPLGQLA 422
Query: 970 ----------VSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPL 1019
+++ L++ M++P E PE + P G++E ++ Y
Sbjct: 423 GLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHR-PRL--QGEIEFRNVSFAYPGQETP 479
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ T G K+ ++GR GSGK+TL+ L L +PT G +++DG+DI I DLR
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 1080 NLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
N+G +PQDP LF G++R N+ P D+EI E + E ++ +GL
Sbjct: 540 NIGYVPQDPRLFYGTLRDNIALGAP--YADDEEILR------AAELAGVTEFVRRHPDGL 591
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC 1196
D + + G + S GQRQ + L R +LR IL+LDE T+++DN ++ ++ ++R A
Sbjct: 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK 651
Query: 1197 TVITVAHRIATVMDCNMVLSMSDGKLVEYDEPK 1229
T++ V HR + + + ++ M +G++V D PK
Sbjct: 652 TLVLVTHRTSLLDLVDRIIVMDNGRIVA-DGPK 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 4e-47
Identities = 144/578 (24%), Positives = 255/578 (44%), Gaps = 63/578 (10%)
Query: 692 LSTFAYLIFLVAQILQSLWIATYIPSTSISRL-KLVIVYSGIGIGMMFLLLTRSFLVVYL 750
+ L+ ++ I + I T IP S L ++ + +G L +S V+ L
Sbjct: 144 MGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203
Query: 751 GLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMA 810
S+ + L R P++F+ G + SR +S I LS + + + +
Sbjct: 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIF 262
Query: 811 VISTFVVLGALTWQVLLVIVPMIYLIIVLQNY--YFATAKE--LMRINGTRSSLLASHLA 866
+ ++ +W++ LV V + + I + KE L+ ++G S L
Sbjct: 263 ALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTV---- 318
Query: 867 ETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWL---IQRLETLSAIVLAT 923
+ + G +R E R FA +A F + + L QR+E L + A
Sbjct: 319 QLINGISKLRVAGAENRAFA-------RWAKLF----SRQRKLELSAQRIENLLTVFNAV 367
Query: 924 SALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQ------ 977
+ T+ + G LS G FL ++ G+ +V +L+
Sbjct: 368 LPVLTSAALFAAAISLLGGAGLSLG----SFLAFNT----AFGSFSGAVTQLSNTLISIL 419
Query: 978 -----YMR---IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFE 1029
+ R I PE V + P +G +E+ + RYRP+ PL+L ++ E
Sbjct: 420 AVIPLWERAKPILEALPE-VDEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIE 477
Query: 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT 1089
G + +VG +GSGK+TL+ L P G + DG D+ + + +R LG++ Q+
Sbjct: 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 1090 LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149
L SGS+ N+ + T E WE L E I+ G+ +++ + G S
Sbjct: 538 LMSGSIFENIAGGAPLTLDEAWE------AARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591
Query: 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVM 1209
GQRQ + + R ++R+ +IL+ DEAT+++DN T +I+ ++ R T I +AHR++T+
Sbjct: 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER--LKVTRIVIAHRLSTIR 649
Query: 1210 DCNMVLSMSDGKLVE---YDEPKKLLRRQDSLFAQLVK 1244
+ + + + G++V+ YDE L ++ LFAQL +
Sbjct: 650 NADRIYVLDAGRVVQQGTYDE----LMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 7e-47
Identities = 163/659 (24%), Positives = 292/659 (44%), Gaps = 88/659 (13%)
Query: 50 TPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQK 109
+P +KA L K+ FWW P+++KG + LE D+ Q+ D A E W+++
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLERE---WDRE 60
Query: 110 RPSA--HPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEI 167
SA +P +L AL C + +F G + + PL L I++ + + EI
Sbjct: 61 LASAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREI 120
Query: 168 -YSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGD 226
Y LA+ L L+ V +L F G+++R +L + I K L+LS+ ++G
Sbjct: 121 AYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQ 180
Query: 227 IVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSP 286
+V+ ++ + + E H +W LQ+ + + +++ + + L +IL L +
Sbjct: 181 LVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240
Query: 287 LAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWL-KV 345
L + Y++ ++RL +E++ N++ +K Y W+ + +I+ +R +E K+
Sbjct: 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKI 300
Query: 346 LQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPI-RLLPDV 404
L+ Y F+S ++ + + GI L +FT ++ +L+ + R P
Sbjct: 301 AYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILR--RIFTTISYCIVLRMTVTRQFPGA 358
Query: 405 FGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEH----------SIF--IKSAD- 451
+ ++ ++ +I +FL E + + + E+ + +F IK +
Sbjct: 359 IQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNK 418
Query: 452 ------------LSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR 499
S + + P L+NI+ +++ + A+ G G+GKS+LL I+GEL
Sbjct: 419 ARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP 478
Query: 500 LQGM-----------------------------------------------DLKMLPFGD 512
+G D+ + P D
Sbjct: 479 SEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKD 538
Query: 513 LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK 572
T +GE G+ LSGGQ+ RI LARA+Y+D D+YLLD PF+ LD T K +F + +S
Sbjct: 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETF 631
KT +LVT +++ L D ILL+ G T+ L +F L+ +G E F
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL------LGLEAF 651
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 12/235 (5%)
Query: 1012 RYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT 1071
RY+P+ P++L I+ + G +G+VGR+GSGK+TL + R P G++++DG D+
Sbjct: 9 RYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLAL 68
Query: 1072 IGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL---REV 1128
LR +G++ Q+ LF+ S+R N+ E +V+E +L +
Sbjct: 69 ADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME--------RVIEAAKLAGAHDF 120
Query: 1129 IQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT 1188
I E EG D++V + GA S GQRQ I + R ++ +IL+ DEAT+++D ++ +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 1189 IRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
+ A TVI +AHR++TV + + ++ M G++VE +LL L+A L
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 1e-45
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 11/225 (4%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G++E ++ Y L ++ T G K+ ++GR GSGK+TL+ L L +PT G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQ 1118
+++DG DI + DLR N+G +PQD TLF G++R N+ PL+ D+ I
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILR------ 112
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
E + + + + GLD + + G S GQRQ + L R +L IL+LDE T+++D
Sbjct: 113 AAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172
Query: 1179 NATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
++ L+ +R+ + T+I + HR + + + ++ M G++V
Sbjct: 173 MNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 3e-45
Identities = 144/593 (24%), Positives = 270/593 (45%), Gaps = 53/593 (8%)
Query: 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLW----IATYIPSTSISRLKLVIVY 729
L +I ++ +K + + A +I + I S + I TYIP + L +
Sbjct: 144 LLKFIPLITRQKKLIVNIV--IAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGI---- 197
Query: 730 SGIGIGMMFLLL-------TRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRI 782
I IG++ + + FL+ LG S I + LF PM+F+ + G I
Sbjct: 198 --ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEI 255
Query: 783 LSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFV--VLGALTWQVLLVIVPMIYLIIVLQ 840
+SR + SIID S ++ + + VI L + + L+ +P+ +II+L
Sbjct: 256 VSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIIL- 314
Query: 841 NYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFF 900
+ T +L +++L S + E + G TI++ +E ++K ID+ +
Sbjct: 315 --FKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSK----IDSEFGDYL 368
Query: 901 HS---FTAREWLIQRLETLSAIVLATSALCT-TLLHKGHKGAGYTGMALSFGLSLNDF-- 954
+ + + Q ++ ++ ++L L T L K G ++F L+ F
Sbjct: 369 NKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLT--LGQLITFNALLSYFLT 426
Query: 955 -LVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRY 1013
L +N Q + V+ RLN+ + SE ++ G + I D+ Y
Sbjct: 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNN---LNGDIVINDVSYSY 483
Query: 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073
+ +L I+ T + K +VG +GSGK+TL L + G+I+++G + I
Sbjct: 484 GYGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID 542
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
+ LR + +PQ+P +FSGS+ NL + EIW E ++++ I+
Sbjct: 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIW------AACEIAEIKDDIEN 596
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD-SILQNTIR 1190
G + + ++G++ S GQ+Q I L R +L ++L+LDE+T+++D T+ I+ N +
Sbjct: 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 1191 REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
+ T+I VAHR++ + ++ + GK++E +LL ++ +A L+
Sbjct: 657 --LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 4e-45
Identities = 133/522 (25%), Positives = 243/522 (46%), Gaps = 81/522 (15%)
Query: 761 KLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIK-STIAVGTTMAVISTFV--- 816
+ + + R P+ F+ G I SRV + + + LS + +T A+ M V +
Sbjct: 232 RFLWHILRLPVRFFAQRHAGDIASRVQLNDQVAEF-LSGQLATTALDAVMLVFYALLMLL 290
Query: 817 ---VLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLL-ASHLAETVAGA 872
VL + + + ++ L +V + R++ R A L
Sbjct: 291 YDPVLTLIG--IAFAAINVLALQLVSR----------RRVDANRRLQQDAGKLTGVAISG 338
Query: 873 M----TIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCT 928
+ T++A E FF++ +A A+ Q L L+ I+ L T
Sbjct: 339 LQSIETLKASGLESDFFSR-------WAGYQAKLLNAQ----QELGVLTQILGVLPTLLT 387
Query: 929 TL-----LHKGH----KGAGYTGMALSFGLSLNDFL--VYSVNN-----QCIVGNLIVSV 972
+L L G +G GM ++F ++ FL V ++ Q + G+L
Sbjct: 388 SLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDL---- 443
Query: 973 ERLNQYMRIPSEAPELVQKNS---PAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFE 1029
RL+ +R P + ++ P +G VE+ ++ Y P P ++ + T +
Sbjct: 444 NRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQ 503
Query: 1030 GGHKIGVVGRTGSGKTT---LISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ 1086
G ++ +VG +GSGK+T L++ L++ P G+I+ DG+ I L +++ ++ Q
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 1087 DPTLFSGSVRYNLDPLSQFTDQEIWEVTIP-SQVLEKCQ---LREVIQEKKEGLDSLVVQ 1142
D LF G+VR NL +W+ TIP + ++ C+ + +VI + G D+ + +
Sbjct: 561 DIFLFEGTVRDNL---------TLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611
Query: 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVA 1202
GAN S GQRQ + + R ++R IL+LDEAT+++D T+ I+ + +RR CT I VA
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVA 669
Query: 1203 HRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
HR++T+ DC+ ++ + GK+V+ ++L +A+L++
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 7e-45
Identities = 141/582 (24%), Positives = 253/582 (43%), Gaps = 67/582 (11%)
Query: 690 FTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLK-LVIVYSGIGIGMMFLLLTRSFLVV 748
+S L LV +L + I + +S L L + + I L R++L
Sbjct: 145 LLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204
Query: 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTT 808
+L + +L L P+ +++S VG ++RV +L+ I++ +
Sbjct: 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR------ELE-QIRNFLTGSAL 257
Query: 809 MAVIS---TFVVLGA-------LTWQVLLVIVPMIYLIIVLQNYYFATAKELMRING--T 856
V+ V L LT V+ +V Y ++ F R+
Sbjct: 258 TVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV--CYALL----SVFVGPILRKRVEDKFE 311
Query: 857 RSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETL 916
RS+ S L E+V G TI+A E +F + + AY ++ F Q +E +
Sbjct: 312 RSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELI 371
Query: 917 SAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLI------- 969
+ A LL G + + LS + +++ + ++
Sbjct: 372 QKLTFAI------LLWFGAH------LVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQ 419
Query: 970 ------VSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRG 1023
+++ERL + P+E P G + +++ RY P++P VL
Sbjct: 420 DFQQTGIALERLGDILNSPTEPRSAGLAALPELR----GAITFENIRFRYAPDSPEVLSN 475
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083
+ + G IG+VG +GSGK+TL L RL P G++++DG+D+ LR +G+
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL---REVIQEKKEGLDSLV 1140
+ Q+ LFS S+R N+ + E V+ +L + I E +G ++ V
Sbjct: 536 VLQENVLFSRSIRDNIALCNPGAPFE--------HVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVIT 1200
+ GAN S GQRQ I + R ++ +IL+ DEAT+++D +++++ +R TVI
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647
Query: 1201 VAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+AHR++TV C+ ++ + G++ E ++LL Q L+A+L
Sbjct: 648 IAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 8e-45
Identities = 134/503 (26%), Positives = 234/503 (46%), Gaps = 44/503 (8%)
Query: 758 IFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVV 817
I L SL R + F+D G + SR+SSD + LS+ + + + ++
Sbjct: 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGF 295
Query: 818 LGALTWQ---VLLVIVPMIYLII-VLQNYYFATAKELMRINGTRSSLLASHLAETVAGAM 873
+ L+ + V L+ +P+++L V Y ++EL + A+ +AE M
Sbjct: 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQE-----AVAKANQVAEEALSGM 350
Query: 874 -TIRAFQNEE----RFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCT 928
T+R+F EE RF + + R+ L + VL
Sbjct: 351 RTVRSFAAEEGEASRFKEALEETLQ---------LNKRKALAYAGYLWTTSVLGMLIQVL 401
Query: 929 TLLHKGH---KGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSV---ERLNQYMRIP 982
L + G G +G +SF L + ++ +V E++ +Y+
Sbjct: 402 VLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL--- 458
Query: 983 SEAPELVQKNSPAPDWPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRT 1040
P + + AP G +E D+ Y RP+ P VL+G+T T G + +VG +
Sbjct: 459 DRKPNIPLTGTLAPLNL-EGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPS 516
Query: 1041 GSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD 1100
GSGK+T+ + L L +PTGG++++DG+ + + L + ++ Q+P LFSGSVR N+
Sbjct: 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576
Query: 1101 PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160
T E E+ ++ + I E G D+ V + G+ S GQ+Q I + R
Sbjct: 577 YGLTDTPDE--EIMAAAK---AANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631
Query: 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDG 1220
++R+ ++L+LDEAT+++D + +LQ + R A+ TV+ +AHR++TV + +L + G
Sbjct: 632 LVRKPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKG 689
Query: 1221 KLVEYDEPKKLLRRQDSLFAQLV 1243
+VE K+L+ Q + LV
Sbjct: 690 SVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-42
Identities = 104/471 (22%), Positives = 207/471 (43%), Gaps = 35/471 (7%)
Query: 780 GRILSRVSSDLSIID---LDLSIKSTIAVGTTMAVISTFVVLGALTWQ--VLLVIVPMIY 834
G +L+R+ +D+ +D L + + +A+ V + L + +LL ++ ++
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVT---IGLSFFSIPLALLLGLILLLL 171
Query: 835 LIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDA 894
L+I+ +Y A K + R++L S + V G + F E+ + L+ +A
Sbjct: 172 LLIIPTLFYRAGRKFGAHLAQGRAALR-SQFTDWVQGQAELLIFGAEDAYRT-ALEATEA 229
Query: 895 YASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLH---KGHKGAGYTGMALSFGL-- 949
+ ++ L +++A + LL + GA A L
Sbjct: 230 S----WLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI 285
Query: 950 --SLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGK-VEI 1006
+L F + +G +I S RLN + E P TG+ +E+
Sbjct: 286 FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF------PDEQTATTGQALEL 339
Query: 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066
++ Y L+ T G K+ ++GR+GSGK+TL+ L +P G I ++G
Sbjct: 340 RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399
Query: 1067 LDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQL 1125
++I ++ LR + ++ Q LFSG++R NL + +D+E+W L++ L
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWA------ALQQVGL 453
Query: 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL 1185
++++ +GL++ + + G S G+R+ + L R +L + +LDE T +D T+ +
Sbjct: 454 EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 1186 QNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ T++ V HR+ + + ++ + +GK++E +LL
Sbjct: 514 LALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 6e-39
Identities = 106/440 (24%), Positives = 185/440 (42%), Gaps = 68/440 (15%)
Query: 809 MAVISTFVVLGALTWQ------VLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLA 862
+AVI +L A+ Q +LL+ P+I + ++L + A+ R S L+
Sbjct: 127 LAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWA---AQAAARKQWAALSRLS 183
Query: 863 SHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYAS--------SFFHSFTAREWLIQRLE 914
H + + G T++ F + A + Y +F S LE
Sbjct: 184 GHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAV--------LE 235
Query: 915 TLSAIVLATSA--LCTTLLHKGHKGAGYTGMALSFGLSLNDFL------VYSVNNQCIVG 966
+ + +A A + LL + L+ GL F+ Y Q +G
Sbjct: 236 LFATLSVALVAVYIGFRLL--------AGDLDLATGL----FVLLLAPEFYLPLRQ--LG 281
Query: 967 NL-------IVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPL 1019
+ + E L + P + A P +E + + Y P
Sbjct: 282 AQYHARADGVAAAEALFAVLDAA-PRPLAGKAPVTAAPAPS---LEFSGVSVAY-PGRRP 336
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
LR ++ T G ++ +VG +G+GK+TL++ L V+PT G I ++G+ + R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQ--FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
+ +PQ P LF+G++ N+ L++ +D EI + LE+ L E + +GLD
Sbjct: 397 QIAWVPQHPFLFAGTIAENIR-LARPDASDAEI------REALERAGLDEFVAALPQGLD 449
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCT 1197
+ + + GA S GQ Q + L R LR +L+LDE TA +D T++ + +R T
Sbjct: 450 TPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRT 509
Query: 1198 VITVAHRIATVMDCNMVLSM 1217
V+ V HR+A + ++ +
Sbjct: 510 VLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 3e-37
Identities = 85/283 (30%), Positives = 151/283 (53%), Gaps = 21/283 (7%)
Query: 966 GNLIVSVERLNQYMRIPSEAPELVQKNSP-APDWPP--TGKVEIYDLQIRYRPNAPLVLR 1022
+ +E++ + + +E ++P AP P G V ++ Y P P +L
Sbjct: 227 RQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILN 280
Query: 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082
GI+ T G + +VG +G+GK+T++ LFR + G I IDG DI + LR +G
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 1083 IIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
I+PQD LF+ ++ YN+ P + T +E+ E Q+ + IQ EG D+
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDA--TAEEVGAA------AEAAQIHDFIQSLPEGYDTG 392
Query: 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVI 1199
V + G S G++Q + + R +L+ IL+LDEAT+++D T+ +Q +R A T +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 1200 TVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
+AHR++T++D + ++ + +G++VE ++LL L+A++
Sbjct: 453 VIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG-GLYAEM 494
|
Length = 497 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-37
Identities = 106/442 (23%), Positives = 188/442 (42%), Gaps = 39/442 (8%)
Query: 780 GRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFV-VLGALTWQVLLVIVPMIYLIIV 838
G +L R+ +D+ + DL ++ + G + V + V + L+ L++ + L
Sbjct: 110 GDLLGRLGADVDALQ-DLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGF 168
Query: 839 LQNYYFATAKELMRINGTRSSLLASHLA----ETVAGAMTIRAFQNEERFFAK----NLD 890
+ A R + L LA + + GA + A A+ + +
Sbjct: 169 VAPLVSLRA---ARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRE 225
Query: 891 LIDA--YASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFG 948
L A A++ A L L L A+ A+ + A T L
Sbjct: 226 LTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVA------DGRLAPVTLAVLVL- 278
Query: 949 LSLNDFLVYSVNNQCIV--GNLIVSVERLNQYMRIPSEAPELVQ-KNSPAPDWPPTGKVE 1005
L L F ++ + + ER+ + + E PT +E
Sbjct: 279 LPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPT--LE 336
Query: 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
+ DL Y P AP VL G++ G ++ ++G +GSGK+TL++ L L++P G++ +D
Sbjct: 337 LRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLD 395
Query: 1066 GLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEK 1122
G+ ++++ ++R + + QD LF +VR NL P TD+E+W LE+
Sbjct: 396 GVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARP--DATDEELWA------ALER 447
Query: 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
L + ++ +GLD+++ + GA S G+RQ + L R +L IL+LDE T +D T
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507
Query: 1183 SILQNTIRREFANCTVITVAHR 1204
L + + TV+ + H
Sbjct: 508 DELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-36
Identities = 79/252 (31%), Positives = 137/252 (54%), Gaps = 23/252 (9%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G VE D+ Y N+ + ++ + G + +VG TG+GK+TLI+ L R+ +P G+
Sbjct: 333 GAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL-----DPLSQFTDQEIWEVTIP 1116
I+IDG DI T+ LR N+ ++ QD LF+ S+ N+ D TD+E+
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDA----TDEEMRA---- 443
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
E+ Q + I+ K +G D++V + G S G+RQ + + R +L+ IL+LDEAT++
Sbjct: 444 --AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSA 501
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPKKLLR 1233
+D T++ ++ + T +AHR++TV + + +L +G++VE +DE L
Sbjct: 502 LDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE----LV 557
Query: 1234 RQDSLFAQLVKE 1245
+ FA L++
Sbjct: 558 ARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-35
Identities = 141/642 (21%), Positives = 251/642 (39%), Gaps = 122/642 (19%)
Query: 77 VLEDIDVPQLRLADRATTCYSLFIEELND-WNQ--------------KRPSAHPSILRAL 121
VL ID ++ + D A L +EE W P S L
Sbjct: 89 VLYKIDKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPL 148
Query: 122 ISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSL---AISLFLVK 178
+ + + + +L+ + A PLF + I +++ +L AI L L
Sbjct: 149 LFKYRRLLFEVLLASLLLQLLALATPLFSQIVID----KVLPDASRSTLTVLAIGLLLAA 204
Query: 179 CVESLAGRHWFFQSRL---TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDA 235
E+L ++ L G ++ L LRL + + G+I++ V +
Sbjct: 205 LFEALLR---LLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-EL 260
Query: 236 YRIGEFPFWFHQIWSTSLQ--------LCIAVVVVYYSVGLA--TIATLIVMILTVLGNS 285
+I EF + + L L V+ YS L +A + + +L L
Sbjct: 261 EQIREF------LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQ 314
Query: 286 PLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKV 345
PL L+ K ++ ++ + E + ++ +K A + F++ + R + +
Sbjct: 315 PL--LRRKTRKLIEE-SAEQQSFLVETIKGIETVKALAAEPRFRSQWDN-RLAKQVNIG- 369
Query: 346 LQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFT--FLATLRILQ----EPIR 399
+ +K ++ S + ++ L+ + G L T L +L PI
Sbjct: 370 FKTEKLALILNTIKSLLQQLSSVLIL--WFGAILVLEGELTLGQLVAFNMLAGYFISPIT 427
Query: 400 LLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLL 459
L ++ F +AKV+L+R+ + L+ P Q D + +L+ I ++ + D
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLI-HLPKLQGEIEFENVSFRYGPDD- 485
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKML----- 508
P L +++LE+ P EK AI G G+GKSTLL +LG L G+DL +
Sbjct: 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545
Query: 509 --------------------------PFGDLTQI------------------------GE 518
P +I GE
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 519 RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLV 578
G NLSGGQ+QR+ LARAL I LLD+ SALD +T + + ++ L +TV+++
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA-IILQNLLQILQGRTVIII 664
Query: 579 THQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVN 620
H++ + + D I+++ G+I++ +++ LL + L
Sbjct: 665 AHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706
|
Length = 709 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 8e-35
Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 32/347 (9%)
Query: 116 SILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFI--------SAAEGEIIFKYEI 167
S+LR L + + + F L+ + P+ LK F+ + G
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRG-------- 284
Query: 168 YSLAISLFLVKCVESLAGRHWFFQ-SRLTGLKIRSSL-------CAAISSKQLRLSNAAK 219
L ++LFL + ++S+ H F+ S GL+ RS+L C ISSK L +
Sbjct: 285 LGLVLTLFLTQLIQSVCL-HRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPD--- 340
Query: 220 MMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMIL 279
M+T G I+N ++ D RI F + +WS+ + L ++++++ VG + + V+++
Sbjct: 341 -MNT-GRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLV 398
Query: 280 TVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEE 339
T+ N + K Q + A + R+KA E +++ K AW+ F IE R+ E
Sbjct: 399 TLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458
Query: 340 YGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIR 399
+L+ +QL + + ++P L+ A Y LG L P VF +A L +L+ P
Sbjct: 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFF 518
Query: 400 LLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCS--RAELEHS 444
++P VF ++ VS+ RI+ FLE S +Q + R + EHS
Sbjct: 519 MIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHS 565
|
Length = 1560 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 48/219 (21%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ ++ RY P VLR ++ + E G + ++G +GSGK+TL + L+ PT G++ +
Sbjct: 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL 61
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
DG DI+ +L ++G +PQD LFSGS+ N+
Sbjct: 62 DGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------- 96
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
S GQRQ +GL R + +ILVLDE + +D +
Sbjct: 97 ----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
Query: 1185 LQNTIRR-EFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
L I + A T I +AHR T+ + +L + DG++
Sbjct: 135 LNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 86/264 (32%), Positives = 149/264 (56%), Gaps = 18/264 (6%)
Query: 982 PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTG 1041
P++APEL N G VE + + N+ + ++ + G + +VG TG
Sbjct: 322 PADAPEL--PNV-------KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTG 371
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD- 1100
+GKTTLI+ L R+ +PT G+I+IDG+DI T+ LR ++ + QD LF+ S+R N+
Sbjct: 372 AGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431
Query: 1101 PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160
TD+E++E + + I ++ G D+LV + G S G+RQ + + R
Sbjct: 432 GREGATDEEVYEAA------KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485
Query: 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDG 1220
+L+ ILVLDEAT+++D T++ ++N I N T +AHR++TV + ++VL + G
Sbjct: 486 ILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545
Query: 1221 KLVEYDEPKKLLRRQDSLFAQLVK 1244
+L+E ++L+++ D F +L++
Sbjct: 546 RLIEKGSFQELIQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 4e-32
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 26/161 (16%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDL 513
P L++++L +KP EK AI G G+GKSTLL +L + G+DL+ L L
Sbjct: 15 KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL 74
Query: 514 TQ---------------IGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT 557
+ I E N LSGGQ+QRI +ARAL +D I +LD+ SALD +T
Sbjct: 75 RKNIAYVPQDPFLFSGTIRE---NILSGGQRQRIAIARALLRDPPILILDEATSALDPET 131
Query: 558 AKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGE 598
L E + KTV+++ H++ + D I+++ G
Sbjct: 132 EA-LILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-31
Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 16/227 (7%)
Query: 1002 GKVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G V+ ++ Y P P LVL+ ++ T G +VG +GSGK+T+++ L +P G
Sbjct: 10 GIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1060 GKIIIDGLDITTIGLYD---LRSNLGIIPQDPTLFSGSVRYNLD-PLSQFTDQEIWEVTI 1115
G++++DG I+ Y+ L S + ++ Q+P LF+ S++ N+ L + + + E
Sbjct: 69 GQVLLDGKPIS---QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAA- 124
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+K I E G D+ V + G+ S GQ+Q + + R ++R Q+L+LDEAT+
Sbjct: 125 -----QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATS 179
Query: 1176 SIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
++D ++ +Q + TV+ +AHR++TV + +L + G++
Sbjct: 180 ALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 23/283 (8%)
Query: 966 GNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGIT 1025
G +I S R+N+ E V + + + + ++ Y VL+G++
Sbjct: 305 GQVIASARRINEIT----EQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLS 360
Query: 1026 CTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085
+ G K+ ++GRTG GK+TL+ L R +P G+I+++G I LR + ++
Sbjct: 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420
Query: 1086 QDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ 1142
Q LFS ++R NL P + +D+ + +VL++ L +++++ K GL++ + +
Sbjct: 421 QRVHLFSATLRDNLLLAAPNA--SDEAL------IEVLQQVGLEKLLEDDK-GLNAWLGE 471
Query: 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS-ILQNTIRREFANCTVITV 1201
G S G+++ +G+ R +L +L+LDE T +D T+ IL+ + N TV+ +
Sbjct: 472 GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMI 530
Query: 1202 AHRIA--TVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
HR+ D + M +G+++E ++LL +Q + QL
Sbjct: 531 THRLTGLEQFDR--ICVMDNGQIIEQGTHQELLAQQGR-YYQL 570
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-29
Identities = 69/245 (28%), Positives = 126/245 (51%), Gaps = 20/245 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E DL+I P+ + + T G +I +VG +G+GKT+L++AL + P G +
Sbjct: 350 IEAEDLEI-LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVL 1120
I+G+++ + R +L + Q+P L G++R N+ +P +D+++ Q L
Sbjct: 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQ------QAL 459
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
E + E + +GLD+ + A S+GQ Q + L R +L+ Q+L+LDE TAS+D
Sbjct: 460 ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 1181 TDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPKKLLRRQDS 1237
++ ++ + T + V H++ + + + M DG++V+ Y E L +
Sbjct: 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE----LSQAGG 575
Query: 1238 LFAQL 1242
LFA L
Sbjct: 576 LFATL 580
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-29
Identities = 62/258 (24%), Positives = 121/258 (46%), Gaps = 22/258 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L +Y + L G++ E G G++G G+GKTTL+ L L++PT G+I+
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD---PLSQFTDQEIWEVTIPSQV 1119
+ G D+ +R +G +PQ+P+L+ +VR NL+ L + +E E ++
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI--EEL 120
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
LE L + +K L S G +Q + + +L ++L+LDE T+ +D
Sbjct: 121 LELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 1180 ATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ + +R T++ H + + C+ V+ ++DGK++ P++L +
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
Query: 1237 SLFAQLVKEYWSHAEKHL 1254
++ + L
Sbjct: 230 GKGVIELEPERLELAELL 247
|
Length = 293 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-29
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDL 513
L N++L +K E A+ G G+GKSTLL AI G L + G D+ LP +L
Sbjct: 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 514 -TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK 572
+IG LSGGQ+QR+ LARAL + D+ LLD+P S LD + + L ++ L++
Sbjct: 72 RRRIGYVP-QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERL--LELLRELAE 128
Query: 573 K--TVLLVTHQVDFL-PAFDSILLISGGE 598
+ TV++VTH + A D ++++ G+
Sbjct: 129 EGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-28
Identities = 72/243 (29%), Positives = 132/243 (54%), Gaps = 9/243 (3%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G +E ++ Y LR I G + +VGR+GSGK+T+ + L R + G+
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS--QFTDQEIWEVTIPSQV 1119
I++DG D+ L LR+ + ++ Q+ LF+ ++ N+ Q++ ++I E +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++ I + GLD+++ ++G S GQRQ I + R +LR IL+LDEAT+++D
Sbjct: 460 MD------FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1180 ATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
++ +Q + N T + +AHR++T+ + +L + DG++VE +LL Q+ ++
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL-AQNGVY 572
Query: 1240 AQL 1242
AQL
Sbjct: 573 AQL 575
|
Length = 582 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 53/219 (24%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM---------------- 503
P L+NINL+++ E AI G G+GK++LL ILGEL +G
Sbjct: 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109
Query: 504 -------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQ 532
D+ P D T +GE G+ LSGGQ+ RI
Sbjct: 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSIL 592
LARA+Y+D D+YLLD PF LD T K +F V ++ KT +LVT +++ L D IL
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 593 LISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETF 631
++ G T+ L +F + MG +TF
Sbjct: 230 ILHEGSSYFYGTFSELQSLRPDFSSKL------MGYDTF 262
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-28
Identities = 123/535 (22%), Positives = 222/535 (41%), Gaps = 57/535 (10%)
Query: 715 IPSTSISRL-KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAF 773
+ S S+ L L ++ G+ + + L RSF++V +G + ++ + ++ F A
Sbjct: 37 LTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT--- 93
Query: 774 YDSTPVGRILSRVSSD--LSIIDLDLSIKSTIAVGTTMA------VISTFVVLGAL-TWQ 824
L R S D ++ DLD ++ + A + +V L W
Sbjct: 94 ---------LRRGSGDGLQALRDLDQ-LRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWI 143
Query: 825 VLLVIVPMIYLI-IVLQNYYF--ATAKELMRINGTRSSLLASHL--AETV-AGAMTIRAF 878
+L + + L+ + L N KE + ++L S L AE + A M
Sbjct: 144 GILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLT 203
Query: 879 QNEERFFAKNLDLIDA--YASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHK 936
+ RF +K L A + + + R+ S VL A L G
Sbjct: 204 KRWGRFHSKYLSAQSAASDRAGMLSNLSK----YFRIVLQSL-VLGLGAY---LAIDGEI 255
Query: 937 GAGYTGMA-LSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMR-IPSEAPELVQKNSP 994
G + G +L ++ + +RLN+ + PS P + P
Sbjct: 256 TPGMMIAGSILVGRALAPI-DGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-----P 309
Query: 995 APDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL 1054
P+ P G + + ++ I LRGI+ + + G + ++G +GSGK+TL + +
Sbjct: 310 LPE--PEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 1055 VEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEV 1113
PT G + +DG D+ ++G +PQD LF G+V N+ + ++I E
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEA 427
Query: 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
+ V E+I +G D+++ GA S GQRQ I L R + +++VLDE
Sbjct: 428 AKLAGV------HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481
Query: 1174 TASIDNATDSILQNTIRR-EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDE 1227
+++D + L N I+ + TV+ + HR + + + +L + DG++ + E
Sbjct: 482 NSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 84/397 (21%), Positives = 157/397 (39%), Gaps = 19/397 (4%)
Query: 127 KSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGR 186
K +L + L+ + PL + I A + E+ L + L L+ + +
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDAL---LADLGELLELLLLLLLLALLGGVLRA 70
Query: 187 HWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFH 246
+ G KI + L + K LRL + SGD+++ +T D +
Sbjct: 71 LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130
Query: 247 QIWSTSLQLCIAVVVVYYSVG-LATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKR 305
+ TS+ L I +V+ +S+ + L+++ L L S LA+ K A +
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGEL 190
Query: 306 LKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYG-WLKVLQLQKGYYMVLFWSSPILI 364
+ E L ++V+K + + E+ E L+ +L+ ++ S +
Sbjct: 191 NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250
Query: 365 GAATLLTCYF-LGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFL- 422
L + L L + F+ L L PI L +V A + +R+ L
Sbjct: 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310
Query: 423 EAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEV 482
E PE+++ + +E ++S+ P L++I+ ++P EK AI G
Sbjct: 311 EEPEVEDPPDPLKDTIGSIEF------ENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPS 364
Query: 483 GAGKSTLLAAILGELP------RLQGMDLKMLPFGDL 513
G+GKSTL+ +L + G+D++ + L
Sbjct: 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401
|
Length = 567 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 20/264 (7%)
Query: 969 IVSVERLNQYMR-IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCT 1027
S +RLN+ + +P+ A + P P P G + + L +L+GI+
Sbjct: 306 RQSYKRLNELLAELPAAAERM-----PLPA--PQGALSVERLTAAPPGQKKPILKGISFA 358
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
+ G +G++G +GSGK+TL L + PT G + +DG D+ L ++G +PQD
Sbjct: 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD 418
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL---REVIQEKKEGLDSLVVQDG 1144
LF G++ N+ ++F ++ P +V+E +L E+I +G D+ + + G
Sbjct: 419 VELFDGTIAENI---ARFGEEAD-----PEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR-EFANCTVITVAH 1203
A S GQRQ I L R + ++VLDE +++D+ ++ L I + TV+ +AH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDE 1227
R + + + +L + DG++ +
Sbjct: 531 RPSALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
D+ +LPFGD T+IGERG+NLSGGQ+QRI +ARALYQ+ +I LDDPFSALD + L
Sbjct: 122 DIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181
Query: 564 EYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGG 597
E ++ L K+T++LVTH++ +LP D I+ + G
Sbjct: 182 EGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 23/244 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E +L RY L+ ++ E G ++ ++G GSGK+TL+ L L++PT G+++
Sbjct: 4 IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 1064 IDGLDITTI-GLYDLRSNLGIIPQDPT--LFSGSVRYNLD---PLSQFTDQEIWEVTIPS 1117
+DGLD ++ L +LR +G++ Q+P LF +V + +EI E
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-- 120
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+ LE GL+ L+ + N S GQ+Q + + V+ +IL+LDE TA +
Sbjct: 121 EALELV-----------GLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169
Query: 1178 DNATDSILQNTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234
D L ++ +E T+I V H + V++ + V+ + DGK++ +P ++
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229
Query: 1235 QDSL 1238
+ L
Sbjct: 230 AELL 233
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 29/167 (17%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLTQI 516
L +++L ++ E I G GAGKSTLL + G L L G DL L +L +
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 517 ----------------GERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK 559
+R N LSGG++QR+ LARAL Q+ I LLD+P S LD
Sbjct: 75 IAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134
Query: 560 FLFTEYVMGALSK---KTVLLVTHQVDFLPAF-DSILLISGGEIIQA 602
L ++ L++ KTV++V H ++ + D ++L+ G I+
Sbjct: 135 ELLE--LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 30/236 (12%)
Query: 1004 VEIYDLQIRY---RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
+E+ ++ + L ++ G G++G +G+GK+TL+ + L PT G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1061 KIIIDGLDITTI---GLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVT- 1114
+ +DG D+T + L LR +G+I Q L S +V N+ PL E+ V
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL------ELAGVPK 115
Query: 1115 --IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
I +V E +L V GL + A S GQ+Q + + R + +IL+ DE
Sbjct: 116 AEIKQRVAELLEL--V------GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167
Query: 1173 ATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
AT+++D T SIL+ I RE T++ + H + V C+ V + G+LVE
Sbjct: 168 ATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-25
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ I ++ Y VL+ ++ + G KI ++GR+GSGK+TL+ L ++P G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
+DG+ ++ + L S + ++ Q P LF ++R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
G +S G+RQ + L R++L+ I++LDE T +D T+
Sbjct: 96 --------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135
Query: 1184 ILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
L + I + T+I + H + + + +L + +GK++
Sbjct: 136 QLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-24
Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 19/269 (7%)
Query: 972 VERLNQ-YMRIPS---EAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCT 1027
VER + Y RI + EAP + + P P+ V I Q Y L + T
Sbjct: 280 VERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIR--QFTYPQTDHPALENVNFT 337
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
+ G +G+ G TGSGK+TL+S + R + + G I + +T + L RS L ++ Q
Sbjct: 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
Query: 1088 PTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144
P LFS +V N+ P + T QEI V + V + I +G D+ V + G
Sbjct: 398 PFLFSDTVANNIALGRPDA--TQQEIEHVARLASV------HDDILRLPQGYDTEVGERG 449
Query: 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD-SILQNTIRREFANCTVITVAH 1203
S GQ+Q I + R +L +IL+LD+A +++D T+ IL N +R+ TVI AH
Sbjct: 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAH 508
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
R++ + + + +L M G + + +L
Sbjct: 509 RLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 18/227 (7%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
EI ++ Y +L+ I+ FEGG +VG +G+GK+TLI + RL++PT G I+I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
DG+DI TI + DLR +G++ Q P LF G+V+ N++ ++ +V ++
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV---- 118
Query: 1125 LREVIQEKKEGLD-SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
GL+ +D N S G+ Q + + R + ++L+LDE T+++D +
Sbjct: 119 ----------GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1184 ILQNTIRR--EFANCTVITVAHRIATVMDC-NMVLSMSDGKLVEYDE 1227
I++ I + N TVI + H + + ++ G LVEY +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-24
Identities = 128/582 (21%), Positives = 251/582 (43%), Gaps = 115/582 (19%)
Query: 727 IVYSGIGIGMMFLLLT--RSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILS 784
I++S + IG+ +L+ SF + + + +++ + + S+F F+D+ P ++ S
Sbjct: 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTS 158
Query: 785 RVSSDLSIIDLDLSIKSTIA-VGTTMAVISTFV--VLGALTWQV---------LLVIVPM 832
DLD ++ A +GT I T+ LG W + + + P+
Sbjct: 159 ---------DLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL 209
Query: 833 IYLIIVLQNYYFATAKELMRINGTRSSLL-----ASHLAETVAGAMTIRAFQNEERFFAK 887
IY+ V+ N + ++IN ++SLL S + E + G T+ ++ E+ K
Sbjct: 210 IYICGVICN-------KKVKIN-KKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKK 261
Query: 888 -NLDLIDAYASSFFHSFTAREWLIQRLET--LSAIVLATSA--------LCTTLLHKGHK 936
NL + + + + ++ L ++ +LA+ A + + L
Sbjct: 262 FNL------SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQP 315
Query: 937 GAGYTG---MALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNS 993
+ G +++ G+ ++ F++ + + + S+E N I + P LV+ N
Sbjct: 316 NNDFHGGSVISILLGVLISMFMLTIILPN--ITEYMKSLEATNSLYEIINRKP-LVENND 372
Query: 994 PAPDWPPTGKVEIYDLQIRYRPNAPL-VLRGITCTFEGGHKIGVVGRTGSGKTTLISALF 1052
K++ +++ Y + + + + T G VG +G GK+T++ +
Sbjct: 373 DGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432
Query: 1053 RLVEPTGGKIII-DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN----------LDP 1101
RL +PT G III D ++ I L RS +G++ QDP LFS S++ N L+
Sbjct: 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEA 492
Query: 1102 LSQFTDQEIWEVTIPSQVLEKCQLR---------------EVIQEKKE------------ 1134
LS + +++ + C+ + E+I+ +K
Sbjct: 493 LSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDV 552
Query: 1135 ---------------GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++LV + + S GQ+Q I + R ++R +IL+LDEAT+S+DN
Sbjct: 553 SKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612
Query: 1180 ATDSILQNTIRREFANCTVIT--VAHRIATVMDCNMVLSMSD 1219
++ ++Q TI N IT +AHR++T+ N + +S+
Sbjct: 613 KSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 26/227 (11%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ +L Y A L I+ T + G + +VG GSGK+TL+ L L+ PT G++++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPT--LFSGSVR----YNLDPLSQFTDQEIWEVTIPSQ 1118
DG D+T + L +LR +G++ Q+P F +V + L+ L ++EI E +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERV--EE 117
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
LE L + + +L S GQ+Q + + V+ IL+LDE TA +D
Sbjct: 118 ALELVGLEGL---RDRSPFTL--------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
Query: 1179 -NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGK 1221
+L+ ++ E T+I V H + +++ + V+ + DGK
Sbjct: 167 PAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-MDLKMLPFGDL------ 513
L+N++LE+K EK A+ G G+GKSTLL + G+L QG + L +P DL
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 514 -------------TQIGER-GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK 559
T + G SGG++QR+ LAR L QD I LLD+P LD T +
Sbjct: 76 LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135
Query: 560 FLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEII 600
L + L KT++ +TH + + D IL + G+II
Sbjct: 136 QLL-SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L Y +L ++ + G G++G GSGK+TL+ L L++P G+++
Sbjct: 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SV-------RY-NLDPLSQFTDQEIWEVT 1114
+DG DI ++ +L L +PQ P+ G +V RY +L + + ++ V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+ LE L +D L S G+RQ + + R + + IL+LDE T
Sbjct: 121 ---EALELLGLEH---LADRPVDEL--------SGGERQRVLIARALAQETPILLLDEPT 166
Query: 1175 ASID-NATDSILQNTIR-REFANCTVITVAH------RIATVMDCNMVLSMSDGKLVEYD 1226
+ +D +L+ TV+ V H R + ++ + DGK+V
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDGKIVAQG 221
Query: 1227 EPKKLL 1232
P+++L
Sbjct: 222 TPEEVL 227
|
Length = 258 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-23
Identities = 57/275 (20%), Positives = 108/275 (39%), Gaps = 5/275 (1%)
Query: 686 GFLYFTLSTFAYLIF-LVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRS 744
L L+ L+F L+ I S L I+ +G+ LL
Sbjct: 4 AILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLIS-LAILLIAVGVLQGLLLQGSF 62
Query: 745 FLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIA 804
+L LG + +F L+ + PM+F+D+ VG + SR+++D+S I L K +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 805 VGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASH 864
+ V+ F+V+ W++ LV++ ++ L+I+L ++L R + S
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182
Query: 865 LAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS 924
E+++G T++AF EE + ++ + + +S + A +
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 925 ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSV 959
L G + + LSL L +
Sbjct: 243 LWFGAYLVISG---GLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 1004 VEIYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+E+ +L + + V L ++ + + G +G+VG +GSGK+TL A+ L++PT G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1062 IIIDGLDITTIG---LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
II DG D+ + R + ++ QDP +L+P +TI Q
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPR----------MTIGEQ 104
Query: 1119 VLE-----KCQLREVIQEKKEGLDSLVVQDGANW--------SMGQRQLIGLGRVVLRRR 1165
+ E ++ +++ L + V S GQRQ + + R +
Sbjct: 105 IAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP 164
Query: 1166 QILVLDEATASIDNAT-DSILQ--NTIRREFANCTVITVAHRIATV-MDCNMVLSMSDGK 1221
++L+ DE T+++D + IL ++ E T++ + H + V + V M GK
Sbjct: 165 KLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGK 223
Query: 1222 LVEY 1225
+VE
Sbjct: 224 IVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 1017 APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD 1076
L+ I G + +VG GSGK++L+SAL +E G + + G
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
++ + Q+P + +G++R N+ F D+E +E +V++ C L ++ +G
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENILFGKPF-DEERYE-----KVIKACALEPDLEILPDGD 117
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQNTIRREFAN 1195
+ + + G N S GQ+Q I L R V I +LD+ +++D I +N I N
Sbjct: 118 LTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 1196 C-TVITVAHRIATVMDCNMVLSMSDGK 1221
T I V H++ + + ++ + +G+
Sbjct: 178 NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 126/581 (21%), Positives = 200/581 (34%), Gaps = 133/581 (22%)
Query: 127 KSILFSGFFALIKVISISAGPLFLKA-FISAAE--GEI-IFKYEIYSLAISLFLV----- 177
K L G I + S G L L FISA+ G IF + S + +
Sbjct: 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAA 74
Query: 178 KCVESLAGRHWFFQSRLTGLKIR--SSLCAAISSKQLRLSNAAKMMHTSGDIVN----YV 231
+ VE L F L+ L++R L + LR + + D+ Y+
Sbjct: 75 RYVERLVSHDATF-RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYL 133
Query: 232 TVDAYRIGEFPFWFHQIWSTSLQLCIAVVVV--YYSVGLATIATLIVMILTVLGNSPLAK 289
V P +L L V + ++S+ LA + LI ++L +L L
Sbjct: 134 RV------IAP------AVVALVLIAVVTIGLSFFSIPLALLLGLI-LLLLLLIIPTLFY 180
Query: 290 LQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYF---------KNVIEKLRSEEY 340
+ L L + + W L + E
Sbjct: 181 RAGR-------KFGAHLAQGRAALRS----QFTDWVQGQAELLIFGAEDAYRTALEATEA 229
Query: 341 GWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYF-------LGIPLNPSNVFTFLATLRI 393
WLK Q ++ + L + +LI ++ G P L
Sbjct: 230 SWLK-AQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288
Query: 394 LQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLS 453
L+ L P F + S R+ + L+ +Q A ++ +++ +
Sbjct: 289 LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT---ATTGQALELRNVSFT 345
Query: 454 WEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKM 507
+ L+N NL + EK AI G G+GKSTLL + G L G+++
Sbjct: 346 YPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 508 LP-------FGDLTQ--------------------------------------------- 515
L LTQ
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 516 ---IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK 572
+GE G LSGG+++R+ LARAL D ++LLD+P LD T V+ L +
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE-----RQVLALLFE 519
Query: 573 ----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
KT+L+VTH++ L D I+++ G+II+ T+ LL
Sbjct: 520 HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 78/276 (28%)
Query: 416 DRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADL---SWEADLLNPTLRNINLEVKP 472
+ + FLE P ++ + I++ DL S + L +N +
Sbjct: 322 ESLVTFLETPLAHPQQGEKE---LASNDPVTIEAEDLEILSPDGKTL---AGPLNFTLPA 375
Query: 473 AEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLK------------------MLP 509
++ A+ G GAGK++LL A+LG LP ++ G++L+ LP
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLP 435
Query: 510 FG----------------------DLTQIGE---------------RGVNLSGGQKQRIQ 532
G + + E + LS GQ QR+
Sbjct: 436 HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495
Query: 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK----KTVLLVTHQVDFLPAF 588
LARAL Q + LLD+P ++LDA + + VM AL+ +T L+VTHQ++ L +
Sbjct: 496 LARALLQPCQLLLLDEPTASLDAHSE-----QLVMQALNAASRRQTTLMVTHQLEDLAQW 550
Query: 589 DSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKE 624
D I ++ G+I+Q Y L F L+ +E
Sbjct: 551 DQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQE 586
|
Length = 588 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 20/243 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ L + VL+G+ G + ++G +GSGK+TL+ + L+ P G+++
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1064 IDGLDITT---IGLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQ 1118
IDG DI+ LY LR +G++ Q LF +V N+ PL + T E I
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS--EEEIREI 116
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
VLEK L V GL A S G ++ + L R + ++L+ DE TA +D
Sbjct: 117 VLEK--LEAV------GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 1179 NATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235
++ + IR + T I V H + T + + + DGK+V P++L
Sbjct: 169 PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
Query: 1236 DSL 1238
D L
Sbjct: 229 DPL 231
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 74/226 (32%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKML---- 508
+P L N+N +KP + ICG G+GKSTLL+ I G++ R + L L
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDS 386
Query: 509 -----------PF----------------------------------------GDLTQIG 517
PF G T++G
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY-VMGALS----K 572
ERGV LSGGQKQRI +ARAL + +I +LDD SA+D + TE+ ++ L
Sbjct: 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR------TEHQILHNLRQWGEG 500
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
+TV++ H++ L IL++ G I Q +D L S ++D+
Sbjct: 501 RTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDM 546
|
Length = 569 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 55/281 (19%), Positives = 105/281 (37%), Gaps = 18/281 (6%)
Query: 129 ILFSGFFALIKVISISAGPLFLKAFISAAEGEII-FKYEIYSLAISLFLVKCVESLAGRH 187
+L + ++ + PL L F+ + + + SLAI L V ++ L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 188 WFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQ 247
F+ G +IR L A+ + L L + ++ G++ + +T D +I +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 248 IWSTSLQLCIAVVVVYYSVG-LATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRL 306
++ SL + +V + G T+ L ++ L +L ++ LAK K A K
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 307 KAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEY-GWLKVLQLQKGYYMVLFWSSPI--- 362
E L ++ +K + + Y +K + +K S I
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAI-------TAGLSFGITQL 233
Query: 363 LIGAATLLTCYFLGIP-----LNPSNVFTFLATLRILQEPI 398
+ + L +F L+ VF FL+ L P+
Sbjct: 234 ISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 33/244 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PT 1058
+E+ DL + Y L+ I+ G ++G +G GK+TL+ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1059 GGKIIIDGLDITTIG--LYDLRSNLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWEV 1113
G++++DG DI + + +LR +G++ Q P F GS+ N+ L +E +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD- 117
Query: 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
+ L K L E D L S GQ+Q + L R + ++L+LDE
Sbjct: 118 ERVEEALRKAAL------WDEVKDRL---HALGLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 1174 TASIDNATDSILQNTIRREFANCTVITVAH------RIATVMDCNMVLSMSDGKLVEYDE 1227
T+++D + + ++ I T++ V H R+A + +G+LVE+
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADR-----TAFLLNGRLVEFGP 223
Query: 1228 PKKL 1231
+++
Sbjct: 224 TEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 45/242 (18%)
Query: 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI- 1072
L+ ++ + G G++GR+G+GK+TLI + L PT G +++DG D+T +
Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS 73
Query: 1073 --GLYDLRSNLGIIPQDPTLFS-----GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL 1125
L R +G+I Q L S +V PL EI V
Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSRTVFENVAL---PL------EIAGVP----------- 113
Query: 1126 REVIQEKKEGLDSLVVQDG---------ANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ I+E+ L LV G A S GQ+Q +G+ R + ++L+ DEAT++
Sbjct: 114 KAEIEERVLELLELV---GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1177 ID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232
+D T SIL I RE T++ + H + V C+ V M G++VE +++
Sbjct: 171 LDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
Query: 1233 RR 1234
Sbjct: 230 AN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 25/162 (15%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDL 513
P LRN++ ++P E AI G G+GKSTL ILG L RL G D+ D
Sbjct: 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW---DP 71
Query: 514 TQIGER-GV--------------N-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT 557
++G+ G N LSGGQ+QR+ LARALY + I +LD+P S LD +
Sbjct: 72 NELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131
Query: 558 AKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEI 599
+ L + T +++ H+ + L + D IL++ G +
Sbjct: 132 ERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 5e-22
Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 34/257 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E ++ RY V + G + ++G +GSGKTT + + RL+EPT G+I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE--VTIPSQVLE 1121
IDG DI +LR +G + Q LF T + E +P L
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF-----------PHMT---VEENIALVPK--LL 103
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANW--------SMGQRQLIGLGRVVLRRRQILVLDEA 1173
K +E I+E+ + L +LV D A + S GQ+Q +G+ R + +L++DE
Sbjct: 104 KWP-KEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
Query: 1174 TASIDNATDSILQNTIRR--EFANCTVITVAHRI--ATVMDCNMVLSMSDGKLVEYDEPK 1229
++D T LQ +R + T++ V H I A + + + M +G++V+ P
Sbjct: 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAI-MKNGEIVQVGTPD 221
Query: 1230 KLLRRQDSLF-AQLVKE 1245
++LR + F A+ V
Sbjct: 222 EILRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 8e-22
Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 50/223 (22%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ ++ RY VL ++ E G + ++G +GSGK+TL+ + L EP G I+
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1064 IDGLDITTIGLY--DLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
IDG D+T + LR +G++ QD LF +L VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFP-----HLT------------------VLE 95
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
L GL S GQ+Q + L R + +L+LDE T+++D T
Sbjct: 96 NIAL---------GL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
Query: 1182 DSILQNTIRREFAN--CTVITVAHRIATVMD-CNMVLSMSDGK 1221
++ ++ A TV+ V H + + V+ + DGK
Sbjct: 136 RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 62/202 (30%), Positives = 87/202 (43%), Gaps = 62/202 (30%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL-P-----RLQGMDLKMLPFGDL 513
P L N++L ++ EK AI G VG+GKSTLL + G P L G D++ L DL
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL 76
Query: 514 TQ-IG--------------------------ER--------GVN---------------- 522
+ IG ER GV
Sbjct: 77 RRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 523 ----LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLV 578
LSGGQ+Q + LARAL D I LLD+P SA+D ++ E + L KT++++
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD-MNSEERLKERLRQLLGDKTLIII 195
Query: 579 THQVDFLPAFDSILLISGGEII 600
TH+ L D I+++ G I+
Sbjct: 196 THRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 2e-21
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 27/237 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
++I +L Y+ + ++ G G++G G+GKTT + L + PT G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQF---TDQEIWEVTIPSQV 1119
I+G I T R +LG PQ LF +VR +L ++ EI E +
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEV--ELL 117
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
L L + + S G ++ + L ++ +L+LDE T+ +D
Sbjct: 118 LRVLGLTDK-------ANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 1180 ATDSILQNTIRREFANCTVITVAHRIATVMD-----CNMVLSMSDGKLVEYDEPKKL 1231
A+ + + I ++I H MD C+ + MSDGKL P++L
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHS----MDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELPR----------LQGMDLKMLP-- 509
L +++L ++ E A+ G G+GKSTLL I G E P L ++ ++ P
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 510 ------------FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT 557
F LT + + LSGGQ+QR+ LARAL D D+ LLD+P SALD T
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
Query: 558 AKFLFTEYV-MGALSKKTVLLVTHQVDFLPAF-DSILLISGGE 598
+ + + A TV+LVTH +D D ++++ G+
Sbjct: 136 RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 7e-21
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 22/158 (13%)
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLK 506
+++ ++ LL L++I+L + P ++ + G GAGKSTLL I GEL +G+
Sbjct: 3 LENLSKTYGGKLL---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 507 M--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL--- 561
+ G Q LSGG+K R+ LA+ L ++ ++ LLD+P + LD ++ + L
Sbjct: 60 GSTVKIGYFEQ-------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112
Query: 562 FTEYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGE 598
EY TV+LV+H FL I+ + G+
Sbjct: 113 LKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 18/138 (13%)
Query: 491 AAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPF 550
A +L +P+ G+D T IGE G LSGGQ QR+ LARAL + LLD+P
Sbjct: 434 AGLLEFVPKPDGLD---------TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484
Query: 551 SALDAKTAKFLFTEYVMGALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYD 606
+ LDA+T + ++ AL + KTVL++TH+++ D I+++ G +++ T++
Sbjct: 485 AHLDAETE-----QIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHE 539
Query: 607 HLLVTSQEFQDLVNAHKE 624
L + +L+ +
Sbjct: 540 ELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 59/246 (23%), Positives = 118/246 (47%), Gaps = 40/246 (16%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ ++ Y + L+ ++ G + ++G GSGK+T+ L L++P G+I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV---- 1119
IDG+ I+ L ++R +GII Q+P +QF I + V
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPD-------------NQF---------IGATVEDDI 105
Query: 1120 ---LE-KCQLREVIQE------KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILV 1169
LE K + +++ KK G++ + ++ N S GQ+Q + + V+ +I++
Sbjct: 106 AFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165
Query: 1170 LDEATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226
DE+T+ +D I + +R+ T+I++ H + + + V+ S+GKL+
Sbjct: 166 FDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEGKLIAQG 224
Query: 1227 EPKKLL 1232
+PK++L
Sbjct: 225 KPKEIL 230
|
Length = 271 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 36/227 (15%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ DL + Y VL ++ + G + +VG G+GK+TL+ A+ L++PT G I +
Sbjct: 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1065 DGLDITTIGLYDLRSNLGIIPQ----DPTL------FSGSVRYNLDPLSQFTDQEIWEVT 1114
G + R +G +PQ D Y L + +
Sbjct: 59 FGKPLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+ LE+ L E+ + + L S GQ+Q + L R +++ +L+LDE
Sbjct: 114 D--EALERVGLSELADRQ---IGEL--------SGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 1175 ASIDNAT-DSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSM 1217
A +D T + I + +RRE T++ V H + V++ + VL +
Sbjct: 161 AGVDPKTQEDIYELLRELRRE--GMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 90.1 bits (225), Expect = 1e-20
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 29/162 (17%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK---------- 506
L +I+L V+ E + + G GAGK+TL+ ILG L ++ G D+K
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75
Query: 507 -MLP-----FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKF 560
LP + +LT + LSGG KQR+ LA+AL D ++ +LD+P S LD ++ +
Sbjct: 76 GYLPEEPSLYENLT--VRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRRE 133
Query: 561 LFTEYVMGALSK--KTVLLVTHQVDFLPA-FDSILLISGGEI 599
+ ++ L K KT+LL +H ++ D + +++ G I
Sbjct: 134 FWE--LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 2e-20
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 52/224 (23%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ +L + Y VL ++ + E G +G++G G+GK+TL+ L L++P+ G+I++
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
DG D+ ++ +L + +P Q LE
Sbjct: 59 DGKDLASLSPKELARKIAYVP--------------------------------QALELLG 86
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID----NA 1180
L + + L S G+RQ + L R + + IL+LDE T+ +D
Sbjct: 87 LAHL---ADRPFNEL--------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 1181 TDSILQNTIRREFANCTVITVAHRIA-TVMDCNMVLSMSDGKLV 1223
+L+ R TV+ V H + + V+ + DG++V
Sbjct: 136 LLELLRRLARER--GKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 2e-20
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---MDLKMLPFGDLTQIGER 519
L ++L V+ E A+ GE GAGKSTL+ + G G +D K + F
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRA 75
Query: 520 GVN----LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--K 573
G+ LS G++Q +++ARAL ++ + +LD+P +AL + LF V+ L
Sbjct: 76 GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGV 133
Query: 574 TVLLVTHQVD 583
V+ ++H++D
Sbjct: 134 AVIFISHRLD 143
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 41/246 (16%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ +L Y PN L+ ++ + G + ++G +G+GK+TL+ L LVEPT G ++I
Sbjct: 2 EVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 1065 DGLDITTIG---LYDLRSNLGIIPQDPTL----------FSGSVRY-----NLDPLSQFT 1106
DG DI + L LR +G+I Q L SG + +L F
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL--FGLFP 118
Query: 1107 DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166
+E LE+ GL Q S GQ+Q + + R ++++ +
Sbjct: 119 KEEK---QRALAALERV-----------GLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 1167 ILVLDEATASIDNATDSILQNTIRR---EFANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222
+++ DE AS+D A+ + + ++R E TVI H++ + + ++ + DG++
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRI 223
Query: 1223 VEYDEP 1228
V +D P
Sbjct: 224 V-FDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-20
Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 34/250 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+ + T E G + ++G +GSGKTT + + RL+EPT G+I+IDG DI+ + +LR
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138
+G + Q LF +V N+ T+P L +E I+++ + L
Sbjct: 76 KIGYVIQQIGLFPHLTVAENI-------------ATVP--KLLG-WDKERIKKRADELLD 119
Query: 1139 LVVQDGANW--------SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN--- 1187
LV D + + S GQ+Q +G+ R + IL++DE ++D T LQ
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 1188 TIRREFANCTVITVAHRI--ATVMDCNMVLSMSDGKLVEYDEPKKLLRR-QDSLFAQLVK 1244
+++E T++ V H I A + + + M G++V+YD P ++L +
Sbjct: 180 ELQKEL-GKTIVFVTHDIDEALKL-ADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFG 237
Query: 1245 EYWSHAEKHL 1254
E + L
Sbjct: 238 ES-ERGLRLL 246
|
Length = 309 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 4e-20
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 52/222 (23%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L RY L I+ T E G G++G G+GKTTLI + L++P G+I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
+ G DI +++ +G +P++P+L+ +VR NL
Sbjct: 59 VLGKDIKKEPE-EVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
S G +Q + L + +L ++L+LDE T+ +D +
Sbjct: 96 ------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131
Query: 1183 SILQNTIRRE-FANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222
+R T++ +H + C+ V +++G++
Sbjct: 132 REFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-20
Identities = 66/297 (22%), Positives = 119/297 (40%), Gaps = 58/297 (19%)
Query: 968 LIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRP---------NAP 1018
L+ +V RL +I + P + + +L RY
Sbjct: 254 LLAAVPRLGD-EKIIRLPRRGPLRAEPL--------LSVRNLSKRYGSRKGLFVRERGEV 304
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--LDITTIGLYD 1076
+ ++ G +G+VG +GSGK+TL L L+ P+ G II DG LD+T L
Sbjct: 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRR 364
Query: 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVI--QEKKE 1134
LR + ++ QDP +L+P +T+ + E ++ E++
Sbjct: 365 LRRRIQMVFQDPY-------SSLNP----------RMTVGDILAEPLRIHGGGSGAERRA 407
Query: 1135 GLDSLVVQDG----------ANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-----N 1179
+ L+ G S GQRQ + + R + ++L+LDE +++D
Sbjct: 408 RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467
Query: 1180 ATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235
+ + ++ E T + ++H +A V + V M DG++VE +K+
Sbjct: 468 VLNLLKD--LQEEL-GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENP 521
|
Length = 539 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 42/252 (16%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +++ + + VL+ + E G + ++G +G GK+TL+ + L EPT G+I+
Sbjct: 4 LELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1064 IDGLDITTIGLYDL---RSNLGIIPQDPTLF-SGSVRYNLD-PL--SQFTDQEI-WEVTI 1115
IDG D+T DL + + ++ Q+ L+ +V N+ L EI V
Sbjct: 62 IDGRDVT-----DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKE 116
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
V + L ++ K L S GQRQ + L R ++R+ ++ +LDE +
Sbjct: 117 ---VAKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLS 162
Query: 1176 SIDNATDSILQNTIRREFAN------CTVITVAHRI--ATVMDCNMVLSMSDGKLVEYDE 1227
++D L+ +R E T I V H A + + ++ M+DG++ +
Sbjct: 163 NLDAK----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGT 217
Query: 1228 PKKLLRRQDSLF 1239
P +L R +LF
Sbjct: 218 PLELYERPANLF 229
|
Length = 338 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 6e-20
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ +L RY L G++ T G G++G G+GKTTL+ L L P+ G I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD--------PLSQFTDQEIWEVT 1114
IDG D+ LR +G +PQ+ ++ +VR LD P + +
Sbjct: 58 IDGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEV-KARV---- 111
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+VLE L + ++K L S G R+ +G+ + ++ IL++DE T
Sbjct: 112 --DEVLELVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPT 158
Query: 1175 ASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
A +D +N + + VI H + V CN V ++ GKLV
Sbjct: 159 AGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 1e-19
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 33/177 (18%)
Query: 431 DMQQVCSRAELEHSIFIKSADLSWEADLLNPTLR-NINLEVKPAEKFAICGEVGAGKSTL 489
D++Q+ A+L +I + + L TLR NI L G A +
Sbjct: 528 DIRQI-DPADLRRNIGY----VPQDPRLFYGTLRDNIAL-----------GAPYADDEEI 571
Query: 490 LAAI----LGELPRL--QGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543
L A + E R G+D+ QIGERG +LSGGQ+Q + LARAL +D I
Sbjct: 572 LRAAELAGVTEFVRRHPDGLDM---------QIGERGRSLSGGQRQAVALARALLRDPPI 622
Query: 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEII 600
LLD+P SA+D ++ + F + + L+ KT++LVTH+ L D I+++ G I+
Sbjct: 623 LLLDEPTSAMDNRSEE-RFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L + Y VL I+ + E G ++G G+GK+TL+ A+ L++P+ G+I
Sbjct: 5 IEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQ----DPTLFSGSVR--------YNLDPLSQFTDQEIW 1111
I G + R +G +PQ D + F +V+ + ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRS-FPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 1112 EVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLD 1171
+V + LE+ + ++ + + L S GQ+Q + L R + + +L+LD
Sbjct: 119 KV---DEALERVGMEDL---RDRQIGEL--------SGGQKQRVLLARALAQNPDLLLLD 164
Query: 1172 EATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD 1210
E +D A + + ++ TV+ V H + VM
Sbjct: 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204
|
Length = 254 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 74/266 (27%), Positives = 104/266 (39%), Gaps = 70/266 (26%)
Query: 397 PIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEA 456
PI + F A+ + R+ L ++ M L +++ +
Sbjct: 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLS----VENVTIV-PP 327
Query: 457 DLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKM--- 507
PTLR I+ ++ E AI G G+GKSTL I+G P RL G DLK
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 508 ---------LP----------------FGDL---------------------------TQ 515
LP FG+ T
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV 447
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-- 573
IG G LSGGQ+QRI LARALY D + +LD+P S LD + + L + AL +
Sbjct: 448 IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN--AIKALKARGI 505
Query: 574 TVLLVTHQVDFLPAFDSILLISGGEI 599
TV+++TH+ L D IL++ G I
Sbjct: 506 TVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-19
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 44/258 (17%)
Query: 1004 VEIYDLQIRYRPNAPL---VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
++I +L Y P L + E G +G++G TGSGK+TLI L L++PT G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1061 KIIIDGLDIT--TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI--- 1115
KIIIDG+DIT + L D+R +G++ Q P + +++E TI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYP------------------EYQLFEETIEKD 104
Query: 1116 ----PSQV-LEKCQLREVIQEKKE--GLDSLVVQDGANW--SMGQRQLIGLGRVVLRRRQ 1166
P + L + ++ ++ GLD +D + + S GQ++ + + VV +
Sbjct: 105 IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164
Query: 1167 ILVLDEATASID-NATDSILQ--NTIRREFANCTVITVAHR---IATVMDCNMVLSMSDG 1220
IL+LDE TA +D D IL + +E+ N T+I V+H +A + D ++ M+ G
Sbjct: 165 ILILDEPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLAD--RIIVMNKG 221
Query: 1221 KLVEYDEPKKLLRRQDSL 1238
K P+++ + ++L
Sbjct: 222 KCELQGTPREVFKEVETL 239
|
Length = 287 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 3e-19
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T +GERGVNLSGGQ+QR+ +ARAL ++ I +LD+ SALD +T + + +
Sbjct: 451 LPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ-DALK 509
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKE 624
L +T L++ H++ + D I+++ G I++ T++ LL + L A
Sbjct: 510 KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 66/228 (28%), Positives = 91/228 (39%), Gaps = 63/228 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLK---------- 506
L +INL V+ E AI G G GKSTLL I G E P L G +
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 507 ----MLP-------------FGDLTQIGERG--------VNLS-----------GGQKQR 530
+LP ++ R V L+ GG +QR
Sbjct: 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQR 138
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQVD---FLP 586
+ +ARAL + LLD+PF ALDA T + L E + + ++KTVLLVTH VD +L
Sbjct: 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA 198
Query: 587 AFDSILLISGGEIIQAATYDHLL-----VTSQEFQDLVNAHKETMGPE 629
D ++++S + L EF +L E + E
Sbjct: 199 --DRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLELREELLEELREE 244
|
Length = 248 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ L Y L ++ T E G + ++G +G GKTTL+ + L P G+I+
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLE 1121
IDG D+T + R N+G++ QD LF +V N+ L + + + I ++V E
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGL---KLRGVPKAEIRARVRE 113
Query: 1122 KCQ---LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+ L ++ L S GQ+Q + L R + R +L+LDE +++D
Sbjct: 114 LLELVGLEGLLNRYPHEL-----------SGGQQQRVALARALAREPSLLLLDEPLSALD 162
Query: 1179 NATDSILQNTIRREFAN--CTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226
L+ ++ T I V H + + + M++G++V+
Sbjct: 163 AKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 1004 VEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+ + +L I Y A L ++ E G +G+VG +GSGK+TL L L +P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1062 IIIDGLDIT-TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE-VTIPSQV 1119
I++DG + + ++ QDP S L+P + + ++ P +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPY---SS----LNPR-----RTVGRILSEPLRP 111
Query: 1120 LEKCQLREVIQE--KKEGLDSLVVQDGAN-WSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ ++ I E + GL + + S GQRQ I + R ++ ++L+LDE T++
Sbjct: 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1177 IDNAT-DSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+D + IL +++E T + ++H +A V C+ + M +G++VE
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222
|
Length = 252 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-18
Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 64/219 (29%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
EI +L RY L ++ T + G + +VG GSGK+TL+ A+ L++PT
Sbjct: 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT------ 52
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
SG + + +++ +E
Sbjct: 53 ---------------------------SGEILIDGKDIAKLPLEE--------------- 70
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
LR I V Q S GQRQ + L R +L +L+LDE T+ +D A+
Sbjct: 71 LRRRI--------GYVPQ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRER 118
Query: 1185 LQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGK 1221
L +R TVI V H + V+ + DGK
Sbjct: 119 LLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-18
Identities = 59/205 (28%), Positives = 85/205 (41%), Gaps = 62/205 (30%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP---- 509
+ +I+L++K E + G G GK+TLL I G E P L G D+ +P
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 510 ----------------------FG-----------------------DLTQIGERGVN-L 523
FG L +R + L
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH 580
SGGQ+QR+ LARAL + + LLD+P SALDAK + + E + L ++ T + VTH
Sbjct: 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE--LKELQRELGITFVYVTH 195
Query: 581 -QVDFLPAFDSILLISGGEIIQAAT 604
Q + L D I +++ G I Q T
Sbjct: 196 DQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 25/257 (9%)
Query: 999 PPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT 1058
P +E+ + + ++L G+ G + ++G +GSGK+TL+ + L+ P
Sbjct: 4 SPEPLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 1059 GGKIIIDGLDITTI---GLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEV 1113
G+I+IDG DI + LY++R +G++ Q LFS +V N+ PL + T E
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLP--ES 119
Query: 1114 TIPSQVLEK---CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
I VL K LR + + S G R+ + L R + ++L L
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP----------SELSGGMRKRVALARAIALDPELLFL 169
Query: 1171 DEATASIDNATDSILQNTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227
DE T+ +D + ++ IR + TVI V H + +++ + V ++DGK++
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 1228 PKKLLRRQDSLFAQLVK 1244
P++LL D Q
Sbjct: 230 PEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 55/240 (22%), Positives = 115/240 (47%), Gaps = 11/240 (4%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L Y P L+ + G + ++G +G+GK+TL+ +L LV+PT G+I+
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1064 IDGLDITTI---GLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQV 1119
+G+ IT + L LR ++G+I Q L SV N+ L ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV--LLGRLGYTSTWRSLFGLF 120
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++ + + + ++ G+ Q + S GQ+Q + + R ++++ +I++ DE AS+D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1180 ATDSILQNTIRREFAN--CTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ + + ++ TVI H++ + ++ + G++V +D P L +
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 26/217 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-- 1077
L+ + E G + +VG +GSGK+TL++ L L +PT G+++I+G D+T + +L
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 1078 --RSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
R +G + Q+ L +V N++ PL I + + + +
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLL-----------IAGKSAGRRKRAAEELLEV 128
Query: 1134 EGL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQN--TI 1189
GL D L+ + + S GQ+Q + + R ++ +I++ DE T ++D+ T +L+ +
Sbjct: 129 LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 1190 RREFANCTVITVAH--RIATVMDCNMVLSMSDGKLVE 1224
+E T+I V H +A D V+ + DGK+ E
Sbjct: 189 NKER-GKTIIMVTHDPELAKYADR--VIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 4e-18
Identities = 62/203 (30%), Positives = 115/203 (56%), Gaps = 16/203 (7%)
Query: 1049 SALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQ 1108
S +F+ GKI++DG+DI L DLR+ I+ Q+P LF+ S+ N+ +F +
Sbjct: 1270 STVFK----NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI----KFGKE 1321
Query: 1109 EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQIL 1168
+ + + + + E I+ D+ V G + S GQ+Q I + R +LR +IL
Sbjct: 1322 DATREDV-KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380
Query: 1169 VLDEATASIDNATDSILQNTIR--REFANCTVITVAHRIATVMDCNMVLSMSD----GKL 1222
+LDEAT+S+D+ ++ +++ TI ++ A+ T+IT+AHRIA++ + ++ ++ G
Sbjct: 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440
Query: 1223 VE-YDEPKKLLRRQDSLFAQLVK 1244
V+ + ++LL QD ++ + VK
Sbjct: 1441 VQAHGTHEELLSVQDGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 33/231 (14%)
Query: 1012 RYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT 1071
Y P LR ++ G + + G +G+GK+TL+ ++ PT GKI+++G D++
Sbjct: 10 AY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 1072 IGLYD---LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE-VTIPSQVLEKCQLRE 1127
+ + LR +G++ QD + L D+ ++E V +P +V+ K
Sbjct: 69 LKGREIPFLRRQIGVVFQD---------FRL-----LPDRTVYENVALPLRVIGKP--PR 112
Query: 1128 VIQE------KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
I+ GL + S G++Q + + R ++ + +L+ DE T ++D
Sbjct: 113 EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 1182 DS-ILQ--NTIRREFANCTVITVAHRIATVMDCNM-VLSMSDGKLVEYDEP 1228
I++ I R TV+ H + V VL++ DG+LV +
Sbjct: 173 SWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-18
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 22/223 (9%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
I ++ Y+ +L ++ G I + G+ G+GKTTL L L++ + G I++
Sbjct: 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPT--LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
+G I + R ++G + QD LF+ SVR L + D + VL
Sbjct: 60 NGKP---IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA---ETVL-- 111
Query: 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
K L +L + + S GQ+Q + + +L + +L+ DE T+ +D
Sbjct: 112 ---------KDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
Query: 1183 SILQNTIRREFANCTVITVA-HRIATVMD-CNMVLSMSDGKLV 1223
+ IR A + V H + C+ VL +++G +V
Sbjct: 163 ERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--LDITTI 1072
P P VL+G+ E G + ++G G+GK+TL+ L L+ P G ++IDG LD +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1073 GLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV--------LEKCQ 1124
GL + R +G++ QDP D +++ + V L + +
Sbjct: 62 GLLERRQRVGLVFQDP------------------DDQLFAADVDQDVAFGPLNLGLSEAE 103
Query: 1125 LREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
+ ++E G L + S G+++ + + V R +L+LDE TA +D A
Sbjct: 104 VERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163
Query: 1183 SILQNTIRR-EFANCTVITVAHRIA 1206
+ +RR TV+ H +
Sbjct: 164 EQMLAILRRLRAEGMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 7e-18
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 60/206 (29%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK---------- 506
L ++ EV+P E F + G GAGK+TLL + G L + G D+
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 507 ------MLPFGDLT----------------------------------QIGERGVNLSGG 526
+ +LT + ++ LSGG
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGG 140
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSKKTVLLVTHQVDF 584
KQR+ +A AL D ++ +LD+P S LD ++ + E + + T+LL TH ++
Sbjct: 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRR-EIWELLRELAKEGGVTILLSTHILEE 199
Query: 585 LPA-FDSILLISGGEIIQAATYDHLL 609
D +++++ G+II T + L
Sbjct: 200 AEELCDRVIILNDGKIIAEGTPEELK 225
|
Length = 293 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 7e-18
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 67/210 (31%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK------- 506
P L +++ + E I G G+GKSTLL + G L L G D+
Sbjct: 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74
Query: 507 -----------MLPFG------------------------------------DLTQIGER 519
PFG L + +R
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134
Query: 520 GVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTV 575
V+ LSGG++QR+ +ARAL Q+ I LLD+P S LD + ++ L++ TV
Sbjct: 135 PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE--LLRDLNREKGLTV 192
Query: 576 LLVTHQVDFLPAF-DSILLISGGEIIQAAT 604
++V H ++ + D ++L+ G+I+ T
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 9e-18
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 23/244 (9%)
Query: 1004 VEIYDLQIRYRPNAP-LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+E+ +L +Y+ + L ++ + G + ++G GSGK+T + + L+E G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDP-TLFSGS-----VRYNLDPLSQFTDQEIWEVTIP 1116
IIDG +T ++D+R +G++ Q+P F G+ V + L+ ++ I +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLE------NKGIPHEEMK 118
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+V E +L G+ ++ A S GQ+Q + + V R +I++LDEAT+
Sbjct: 119 ERVNEALEL--------VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 1177 IDNATDSILQNTIR--REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
+D L TI+ R+ TVI++ H + V + VL M +G++ P++L R
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
Query: 1235 QDSL 1238
+ L
Sbjct: 231 GNDL 234
|
Length = 279 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 29/216 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-- 1077
L+G++ + E G + +VG +GSGK+TL++ L L PT G++ +DG DI+ + +L
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 1078 --RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
R ++G + Q +NL L T E V +P +L +E + +E
Sbjct: 79 FRRRHIGFVFQS---------FNL--LPDLTALE--NVELP-LLLAGVPKKERRERAEEL 124
Query: 1136 LDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
L+ + + D N S GQ+Q + + R + +I++ DE T ++D+ T + +R
Sbjct: 125 LERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1191 R--EFANCTVITVAH--RIATVMDCNMVLSMSDGKL 1222
+ A T++ V H +A D ++ + DGK+
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADR--IIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T IGERGV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + V
Sbjct: 124 LPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER-----LVQ 178
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL + +T ++ H++ + D I+++ G+I++ T++ LL
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL 224
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 34/247 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L Y PN L+ I G + ++G +G+GK+TL+ + RLVEP+ G I+
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1064 IDGLDITTIGLYDLRS---NLGIIPQDPTLFSGSV--------RYNLDP-----LSQFTD 1107
++G DIT + LR +G+I Q L R P L +F++
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167
++ + L V GL Q S GQ+Q + + R + ++ +
Sbjct: 121 ED--------KERALSALERV------GLADKAYQRADQLSGGQQQRVAIARALAQQPDL 166
Query: 1168 LVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
++ DE AS+D T + + ++R + TVI H++ + ++ + G++V
Sbjct: 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226
Query: 1225 YDEPKKL 1231
P +L
Sbjct: 227 DGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 507 MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV 566
LP G T +GERG LSGGQKQRI +ARAL ++ I LLD+ SALDA++ K V
Sbjct: 124 SLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-----V 178
Query: 567 MGALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
AL + +T +++ H++ + D I ++ G++++ T+D L+ + LV A
Sbjct: 179 QEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 4e-17
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 43/224 (19%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYDL 1077
L ++ G GV+G +G+GK+TLI + L PT G++++DG D+T + L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL----REVIQEKK 1133
R +G+I Q +NL LS T + V +P LE L + I+ +
Sbjct: 81 RRQIGMIFQ---------HFNL--LSSRTVFD--NVALP---LE---LAGTPKAEIKARV 121
Query: 1134 EGLDSLVVQDG---------ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA-TDS 1183
L LV G A S GQ+Q + + R + ++L+ DEAT+++D A T S
Sbjct: 122 TELLELV---GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1184 ILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
IL+ I RE T++ + H + V C+ V + G+LVE
Sbjct: 179 ILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 63/208 (30%), Positives = 83/208 (39%), Gaps = 72/208 (34%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK---------- 506
L +I+L V+ E A+ G G GKSTLL I G + G +
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 507 ----MLP---------FG------DLTQIGERG------VNLSG-----------GQKQR 530
+LP G + ER V LSG G +QR
Sbjct: 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-------SKKTVLLVTHQVD 583
+ LARAL D D+ LLD+PFSALDA T + + KTVLLVTH +D
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDA------LTREQLQEELLDIWRETGKTVLLVTHDID 193
Query: 584 ---FLPAFDSILLISG--GEIIQAATYD 606
FL D ++++S G I+ D
Sbjct: 194 EAVFLA--DRVVVLSARPGRIVAEVEVD 219
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 30/248 (12%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+ + + RY A L+ ++ + G + +VG GSGK+TL L L+ P G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV--- 1119
+ G+ ++ ++D+R +G++ Q+P +QF T+ V
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPD-------------NQFVG-----ATVQDDVAFG 106
Query: 1120 LEKCQL-REVIQEKKE------GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
LE + RE + E+ + G++ + ++ S GQ+Q + + V+ + I++LDE
Sbjct: 107 LENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 1173 ATASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKK 1230
AT+ +D + T+R+ E TV+++ H + + V+ M+ G+++E P++
Sbjct: 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226
Query: 1231 LLRRQDSL 1238
+ + L
Sbjct: 227 IFKSGHML 234
|
Length = 279 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 72/220 (32%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLPFGDLT 514
L++++L V E F I G GAGKSTL+ I G E P + G DL +L +L
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 515 ----QIG--------------------------------ERGVN---------------- 522
+IG E V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP 138
Query: 523 --LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK------T 574
LSGGQKQR+ +ARAL + + L D+ SALD +T T+ ++ L T
Sbjct: 139 AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-----TQSILALLRDINRELGLT 193
Query: 575 VLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
++L+TH+++ + D + ++ GE+++ T + + Q
Sbjct: 194 IVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G T +GERG+ LSGG+KQR+ +ARA+ ++ I LLD+ SALD T + +
Sbjct: 123 FPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER-----EIQ 177
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL +T +++ H++ + D I+++ G I++ T++ LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL 223
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 9e-17
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 9/88 (10%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-- 572
QIGE LSGGQKQR+ LARAL Q+ D+ LLD+PF+ +D K ++ ++ L +
Sbjct: 136 QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEG 189
Query: 573 KTVLLVTHQVDFLPA-FDSILLISGGEI 599
KTVL+VTH + + A FD ++ ++ I
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 9e-17
Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 29/242 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+EI +L + VL+GI+ + E G + ++G +GSGK+TL+ L L EP G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1064 IDGLDITT-IGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
+DG D+ + LR +G++ Q LF +V N VT+ ++
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN--------------VTLAPVKVK 106
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
K E ++ E L+ + + D A+ S GQ+Q + + R + ++++ DE T++
Sbjct: 107 KLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
Query: 1177 ID-NATDSILQNTIRREFAN--CTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLL 1232
+D +L + ++ A T+I V H + + + V+ M GK++E P++
Sbjct: 167 LDPELVGEVLD--VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
Query: 1233 RR 1234
Sbjct: 225 DN 226
|
Length = 240 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 61/203 (30%), Positives = 87/203 (42%), Gaps = 61/203 (30%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP---- 509
L +++L V+P E A+ G G GK+TLL I G E P + G D+ +P
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 510 -----------FGDLT-----------------QIGER------GVNLS----------- 524
F LT +I R V L
Sbjct: 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELS 132
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH- 580
GGQ+QR+ LARAL ++ + LLD+P SALDAK + L E + L ++ T + VTH
Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE--LKELQRELGITTIYVTHD 190
Query: 581 QVDFLPAFDSILLISGGEIIQAA 603
Q + L D I +++ G I+Q
Sbjct: 191 QEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 55/243 (22%), Positives = 111/243 (45%), Gaps = 22/243 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ ++ +Y+ +A L+ ++ G +VG GSGK+T+ + + + G+I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDP-TLFSGS-----VRYNLDPLSQFTDQEIWEVTIPS 1117
+ IT LR ++GI+ Q+P F GS V + L+ + D+ V S
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRV---S 124
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+ L++ + E + L S GQ+Q + + V+ +++LDEAT+ +
Sbjct: 125 EALKQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235
D L + +R+ N T+I++ H ++ M+ + V+ M+ G + + P ++
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 1236 DSL 1238
+ L
Sbjct: 234 EEL 236
|
Length = 269 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
Q+ Y +L I+ + G I + G +G GK+TL+ + L+ PT G ++ +G D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 1070 TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVI 1129
+T+ R + Q P LF +V NL Q ++ + +L + L + I
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRP-DRAAALDLLARFALPDSI 126
Query: 1130 QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
K S G++Q I L R + +IL+LDE T+++D + ++ I
Sbjct: 127 LTKN----------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 1190 RREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227
R N V+ + H + + V+++ G E E
Sbjct: 177 HRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEMQE 217
|
Length = 223 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 63/210 (30%), Positives = 81/210 (38%), Gaps = 69/210 (32%)
Query: 467 NLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP----------- 509
+L V E AI G GAGKSTLL I G E P + G+D P
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 510 ----FGDLT----------------------------QIGERGV------NLSGGQKQRI 531
F LT Q+G G LSGGQ+QR+
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-------TVLLVTHQVDF 584
LAR L +++ I LLD+PFSALD L E M AL + T+L+VTH +
Sbjct: 139 ALARCLVREQPILLLDEPFSALDPA----LRAE--MLALVSQLCDERKMTLLMVTHHPED 192
Query: 585 LPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
D ++ + G I + LL
Sbjct: 193 AARIADRVVFLDNGRIAAQGSTQELLSGKA 222
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 3e-16
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+EI +L + VL+GI T + G + ++G +GSGK+TL+ + L EP G II
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1064 IDGLDIT--TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
IDGL +T + +LR +G++ Q LF +L L +T+ ++
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLEN--------ITLAPIKVK 105
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANW-----SMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
E + E L+ + + D A+ S GQ+Q + + R + ++++ DE T++
Sbjct: 106 GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
Query: 1177 ID 1178
+D
Sbjct: 166 LD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGGQ+QR+ +ARAL D + L+D+PF ALD T L E+ + KT++ VTH
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195
Query: 582 VDFLPAF---DSILLISGGEIIQAATYDHLL 609
+D AF D I ++ GEI+Q T D +L
Sbjct: 196 ID--EAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 58/238 (24%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ +L ++ L+ ++ E G ++G TGSGK+ L+ + ++P GKI+
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
++G DIT L + ++ +PQ+ LF +V N+ + + ++K
Sbjct: 58 LNGKDITN--LPPEKRDISYVPQNYALFPHMTVYKNI------------AYGLKKRKVDK 103
Query: 1123 CQL-REVIQ-EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
++ R+V++ + G+D L+ + S G++Q + + R ++ +IL+LDE +++D
Sbjct: 104 KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
Query: 1181 TDSILQN---TIRREFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRR 1234
T L+ IR+EF TV+ V H + V M +GKL++ +P+++ ++
Sbjct: 164 TKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-16
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
+ LP G T IGE G LSGGQ QR+ LARA +D + LLD+P + LDA+T E
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA-EVLE 499
Query: 565 YVMGALSKKTVLLVTHQVDFLPAFDSILLI 594
+ +TVLLVTH++ D I+++
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 6e-16
Identities = 58/212 (27%), Positives = 84/212 (39%), Gaps = 69/212 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
+ ++NL ++ E + G G+GK+T L I + + G D+ L
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 510 ----------FGDLT-----------------QIGERGVNL------------------- 523
F LT +I +R L
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTH 580
SGGQ+QR+ +ARAL D I L+D+PF ALD T K L E + KT++ VTH
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE--LQKELGKTIVFVTH 194
Query: 581 QVDFLPAF---DSILLISGGEIIQAATYDHLL 609
+D A D I ++ GEI+Q T D +L
Sbjct: 195 DID--EALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 6e-16
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 1045 TTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNLGIIPQDPTLF-SGSVRYNLDP- 1101
+TL+ + L++PT G I++DG D T + LR +G++ QDP LF +VR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1102 -LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD-GANWSMGQRQLIGLGR 1159
+ D E L V GL + ++ S GQ+Q + + R
Sbjct: 61 LRDKEADARAEEA-----------LERV------GLPDFLDREPVGTLSGGQKQRVAIAR 103
Query: 1160 VVLRRRQILVLDEATA 1175
+L++ ++L+LDE TA
Sbjct: 104 ALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 25/239 (10%)
Query: 1004 VEIYDLQIRYRP--NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+E+ DL Y A +R ++ E G G++G G+GKTTL+ + L+ P GK
Sbjct: 2 LEVTDLTKSYGSKVQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNL---DPLSQFTDQEIWEVTIPS 1117
+ IDG+D + +R +G++ + L++ + R NL L+ + +EI +
Sbjct: 59 VTIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARI--A 115
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
++ ++ QL E + + S G +Q + + R ++ ILVLDE T+ +
Sbjct: 116 ELSKRLQLLEYLDRRVGEF-----------STGMKQKVAIARALVHDPSILVLDEPTSGL 164
Query: 1178 DNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234
D T + I++ VI +H + V C+ V+ + G++V + L R
Sbjct: 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+L G++ T G + ++GR G+GKTTL+ + L+ P G I DG DIT + ++ R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RA 73
Query: 1080 NLGI--IPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE----- 1131
GI +P+ +F +V NL + + + + + ++
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENL--------------LLGAYARRRAKRKARLERVYELF 119
Query: 1132 --KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
KE Q S G++Q++ + R ++ R ++L+LDE +
Sbjct: 120 PRLKERRK----QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 22/244 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ +L Y + L+GI + G ++G G+GK+TL L +++P+ G+I+
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1064 IDG--LDITTIGLYDLRSNLGIIPQDP--TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV 1119
DG +D + GL LR ++G++ QDP LFS SV + D V +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV---------YQDVSFGAVNLK--- 112
Query: 1120 LEKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
L + ++R+ + K+ G++ L + S GQ++ + + V++ ++LVLDE TA +
Sbjct: 113 LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRR 1234
D S + + + T+I H I V + C+ V M +G+++ PK++
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
Query: 1235 QDSL 1238
++ L
Sbjct: 233 KEML 236
|
Length = 283 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 18/226 (7%)
Query: 1004 VEIYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+ L R+R V + G++ T + G G++G G+GKTT + L L+EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVL 1120
+DG D+ + R LG + L+ + R NL+ + + E+T + L
Sbjct: 62 ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 1121 -EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++ + E++ + G S G RQ + + R ++ +L+LDE T +D
Sbjct: 121 ADRLGMEELLDRRVGGF-----------STGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 1180 ATDSILQNTIRR-EFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
L+ IR+ ++ H + V C+ V+ + G++V
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 29/231 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+L G++ G + ++G G+GK+TL+ AL + P G++ ++G+ + + +L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1080 NLGIIPQDPTL-FSGSVR--YNLDPLSQFTDQEIWE-VTIPSQVLEKCQLREVIQEKKEG 1135
+ ++PQ+ +L F +V+ + + + +E E I +Q L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT-----------D 124
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRV------VLRRRQILVLDEATASIDNATDSILQNTI 1189
L L +D S G++Q + L RV + + L LDE T+++D A +T+
Sbjct: 125 LSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ---HHTL 181
Query: 1190 R--REFAN--CTVITVAHRI-ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235
R R+ A V+ V H + + ++ + G+++ P+ +L +
Sbjct: 182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 47/206 (22%)
Query: 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP----- 498
I +++ + + DL P L+N++ +VK EK I G GAGKSTL+ A+ L
Sbjct: 6 EIEVENLSVRYAPDL-PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 499 -RLQGMDLKMLPFGDLT------------------------------------QIGERGV 521
+ G+D+ +P DL ++ E G+
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGL 124
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
NLS GQ+Q + LARAL + + +LD+ +++D T L + + + T+L + H+
Sbjct: 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-LIQKTIREEFTNSTILTIAHR 183
Query: 582 VDFLPAFDSILLISGGEIIQAATYDH 607
+ + +D IL++ GE+ + YDH
Sbjct: 184 LRTIIDYDKILVMDAGEVKE---YDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ + M
Sbjct: 124 LPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--M 181
Query: 568 GALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ +TV+++ H++ + D I+++ G I++ ++D LL
Sbjct: 182 HDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-15
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T++GE+G NLSGGQ+QRI +ARAL + I + D+ SALD ++ + M
Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--M 636
Query: 568 GALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
+ + +TV+++ H++ + A D I+++ G+I ++ ++ LL + L
Sbjct: 637 REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 67/218 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM--------------DLKML 508
L+ ++L+V+ E AI G G+GKSTLL I+G L G +L L
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 509 P------------FGDLT------------------QIGER--------GV--------- 521
F LT +I E G+
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
LSGG K+R+ LARAL D ++ L D+P + LD + + + + +L K+ T ++V
Sbjct: 136 ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS-GVIDDLIR-SLKKELGLTSIMV 193
Query: 579 THQVDF-LPAFDSILLISGGEIIQAATYDHLLVTSQEF 615
TH +D D I ++ G+I+ T + L +
Sbjct: 194 THDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPL 231
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 61/207 (29%)
Query: 457 DLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP- 509
D L+N++LEV+ + F I G G+GKS LL I G + L G D+ LP
Sbjct: 9 DWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP 68
Query: 510 --------------FGDLT-----------------QIGERGVNL--------------- 523
F +T +I + + +
Sbjct: 69 EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE 128
Query: 524 --SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY-VMGALSKKTVLLVTH 580
SGG++QR+ +ARAL + I LLD+PFSALD +T + L E + TVL VTH
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188
Query: 581 QVDFLPAF---DSILLISGGEIIQAAT 604
DF A+ D + ++ G++IQ
Sbjct: 189 --DFEEAWALADKVAIMLNGKLIQVGK 213
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL--- 1077
L ++ G GV+G +G+GK+TLI + L PT G +I+DG D+TT+ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1078 RSNLGIIPQDPTLFS-----GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK 1132
R +G+I Q L S G+V L+ + D+ I +V E L + +K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE------IKRKVTELLALVG-LGDK 133
Query: 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA-TDSILQ--NTI 1189
+ S N S GQ+Q + + R + ++L+ DEAT+++D A T SIL+ I
Sbjct: 134 HDSYPS-------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 1190 RREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226
R T++ + H + V C+ V +S+G+L+E
Sbjct: 187 NRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 3e-15
Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 23/248 (9%)
Query: 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG- 1059
G + I L++ Y N VL ++ E G + ++G++G GKTTL+ A+ V+ G
Sbjct: 3 CGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1060 -GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
G+I I D+T + + L ++ Q+ LF ++ + +Q
Sbjct: 61 TGRIAIADRDLTHAPPH--KRGLALLFQNYALFP-----------HLKVEDNVAFGLRAQ 107
Query: 1119 VLEKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ K + E + + K GL A S G +Q I + R + +L+LDE ++
Sbjct: 108 KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 1177 ID-NATDSILQNTIR--REFANCTVITVAH-RIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+D N ++ + E T++ V H + + + M DG+L + EP+ L
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 1233 RRQDSLFA 1240
FA
Sbjct: 228 DAPADGFA 235
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-R 1078
LRG++ E G + ++GR G+GKTTL+ + LV P G+II DG DIT + ++ R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 1079 SNLGIIPQDPTLFSG-SVRYNL----DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+ +P+ +F +V NL QE +V E L ++E++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD----LEEVYE---LFPRLKERR 130
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
Q S G++Q++ + R ++ R ++L+LDE +
Sbjct: 131 N-------QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165
|
Length = 237 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T +GE G NLS G++Q + +ARA+ +D I +LD+ S +D +T K + + +
Sbjct: 125 LPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEAL 182
Query: 568 GALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610
L K +T +++ H++ + D IL++ G+II+ T+D LL
Sbjct: 183 EKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 6e-15
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T +GERGV LSGGQ+QRI +ARA+ +D I LLD+ SALDA++ + L + +
Sbjct: 462 LPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ-LVQQALE 520
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619
+ +T L++ H++ + D I+++ G I+ T+ L+ + L
Sbjct: 521 TLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 6e-15
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 45/258 (17%)
Query: 1004 VEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP---- 1057
+E+ +L + + +R ++ E G +G+VG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1058 TGGKIIIDGLDITTIGLYDLRSNLG----IIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV 1113
T G++I+DG D+ + ++R G +I QDP + +L+P+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP--MT-----SLNPVM---------- 108
Query: 1114 TIPSQVLEKCQLR------EVIQEKKEGLDSLVVQDGANWSM-------GQRQLIGLGRV 1160
TI Q+ E +L E + E L+ + + D G RQ + +
Sbjct: 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168
Query: 1161 VLRRRQILVLDEATASIDNAT-DSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLS 1216
+ + ++L+ DE T ++D T IL ++RE V+ + H + V + + V+
Sbjct: 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVV 227
Query: 1217 MSDGKLVEYDEPKKLLRR 1234
M G++VE +++L
Sbjct: 228 MYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 6e-15
Identities = 65/209 (31%), Positives = 90/209 (43%), Gaps = 67/209 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP------- 509
L++I+L VK E + G G GK+TLL I G E G D+ LP
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 510 --------FGDLT-----------------QIGERGVN------------------LSGG 526
F +LT ++ ER V LSGG
Sbjct: 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER-VAELLDLVGLPGSERKYPGQLSGG 138
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH-QV 582
Q+QR+ LARAL + LLD+P SALDA+ + L TE + L ++ T ++VTH Q
Sbjct: 139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGVTTIMVTHDQE 196
Query: 583 DFLPAFDSILLISGGEIIQAAT----YDH 607
+ L D I++++ G I Q T Y H
Sbjct: 197 EALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 1013 YRPNAPLVLRG---ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
Y P P+ +G I+ E G + +VG TGSGK+TL+ L++P+ G I I G I
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
Query: 1070 T----TIGLYDLRSNLGIIPQDP--TLFSGSVRYNLD--PLS-QFTDQEIWEVTIPSQVL 1120
T L LR + ++ Q P LF +V +++ P + F++ E E + + L
Sbjct: 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL--KWL 129
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-N 1179
+K L E + K S GQ + + + V+ +IL LDE A +D
Sbjct: 130 KKVGLSEDLISKSP----------FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 1180 ATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
++Q + A TVI V H + V + + VL + GKL+++ PK++ ++ L
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWL 239
|
Length = 287 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 8e-15
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 68/213 (31%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
L ++L+V E AI G G+GKSTLL ILG L + G D+ L
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 510 -------------FGDLT-----------------------------QIGERGVN----- 522
F LT +G RG
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143
Query: 523 --LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLL 577
LSGG ++R+ LARA+ D ++ LD+P S LD +A + E + L+ TV++
Sbjct: 144 SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIR-ELNDALGLTVIM 201
Query: 578 VTHQVD-FLPAFDSILLISGGEIIQAATYDHLL 609
VTH +D L D + +++ G++I T + LL
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234
|
Length = 263 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 9e-15
Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 31/283 (10%)
Query: 970 VSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFE 1029
VS++RL ++ P+ +++ + P + +++ + + P L GIT +
Sbjct: 605 VSLKRLRIFLSHEELEPDSIERRTIKPG--EGNSITVHNATFTWARDLPPTLNGITFSIP 662
Query: 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT 1089
G + VVG+ G GK++L+SAL ++ G + + G ++ +PQ
Sbjct: 663 EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAW 709
Query: 1090 LFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146
+ + S+R N+ L++ Q QVLE C L ++ G + + + G N
Sbjct: 710 IQNDSLRENILFGKALNEKYYQ---------QVLEACALLPDLEILPSGDRTEIGEKGVN 760
Query: 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNTIRRE--FANCTVITVAH 1203
S GQ+Q + L R V I + D+ +++D + I ++ I E N T I V H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
I+ + ++++ MS GK+ E ++LL+R D FA+ ++ Y
Sbjct: 821 GISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 15/89 (16%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-- 572
QIGE LSGGQ+QR+ LARAL QD D+ LLD+PF+ +D KT E + L +
Sbjct: 129 QIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-----QEDIYELLRELR 179
Query: 573 ---KTVLLVTHQVD-FLPAFDSILLISGG 597
T+L+VTH + L FD +LL++
Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 70/204 (34%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP---------------------- 498
P L +INL ++ E + G G GK+TLL I G +P
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 499 ---------------------RLQGMD--------LKMLPFGDLTQIGERGV-NLSGGQK 528
+L G++ +ML L +R + LSGGQ+
Sbjct: 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQR 134
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-------SKKTVLLVTHQ 581
QR+ +ARAL + + LLD+PF ALDA FT M L + K VLL+TH
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDA------FTREQMQTLLLKLWQETGKQVLLITHD 188
Query: 582 VD---FLPAFDSILLISG-GEIIQ 601
++ F+ A + +LL G G +++
Sbjct: 189 IEEAVFM-ATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 1e-14
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK---FLFTEYVMGALSK 572
+GE G LSGG+++R+ +ARAL D + LLD+P LDA+T + L E+
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN---- 524
Query: 573 KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
KTVL++TH++ L FD I ++ G+II+ T+ LL + L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 63/207 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP------- 509
L ++NLEV A+ G G+GKSTLL I G E P RL G D +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 510 -------------------FG----------------------DLTQIGERGVN-LSGGQ 527
FG L +G+R N LSGGQ
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQ 135
Query: 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL--FTEYVMGALSKKTVLLVTH-QVDF 584
+QR+ LARAL + + LLD+PF ALDAK K L + + + TV VTH Q +
Sbjct: 136 RQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV-FVTHDQEEA 194
Query: 585 LPAFDSILLISGGEIIQAAT----YDH 607
+ D I+++S G+I Q + YDH
Sbjct: 195 MEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 66/215 (30%), Positives = 87/215 (40%), Gaps = 70/215 (32%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQG---MDLKMLP-- 509
L +I+L++K E A+ G GAGKSTLL I G E P RL G D+ L
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 510 ------------------------FG------------DLTQIGE--RGVNLS------- 524
FG ++ E R V L
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135
Query: 525 ----GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL---SKKTVLL 577
GGQ+QR+ LARAL + + LLD+PF ALDAK K L + L T +
Sbjct: 136 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL--RRWLRKLHDRLGVTTVF 193
Query: 578 VTH-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
VTH Q + L D +++++ G I Q YDH
Sbjct: 194 VTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 33/230 (14%)
Query: 1016 NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG-L 1074
L L + + G + ++GR GSGK+T+ + L+ P+ GK+ +DGLD + L
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV--------LEKCQLR 1126
+D+R+ G++ Q+P D +I + V + ++R
Sbjct: 81 WDIRNKAGMVFQNP------------------DNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 1127 EVIQEKKEGLDSLVVQDGAN--WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
E + E + + + A S GQ+Q + + ++ R + ++ DE TA +D +
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182
Query: 1185 LQNTIR---REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKL 1231
+ NTI+ +++ T+I + H + ++ + ++ M GK+V PK++
Sbjct: 183 VVNTIKELNKKY-GITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 27/227 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
++ DL Y VL I+ + G G +G G+GKTT + + L++P G+I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNL---DPLSQFTDQEIWEVTIPSQV 1119
DG + +G + + P + + R NL L + I +V
Sbjct: 59 FDGKSYQK--NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI------DEV 110
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
L+ L++ ++K +G S+G +Q +G+ +L +L+LDE T +D
Sbjct: 111 LDVVGLKDSAKKKVKGF-----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159
Query: 1180 ATDSILQNTIRREFAN-CTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
L+ I TV+ +H ++ + + + ++ GKL+E
Sbjct: 160 DGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-14
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG- 1073
P+ L I + G IG++G+ GSGK+TL L L+ P GK+++ G+D
Sbjct: 12 PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK 71
Query: 1074 LYDLRSNLGIIPQDP-TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK 1132
L +R +GI+ Q+P T F G T +E + L ++R+ +
Sbjct: 72 LQGIRKLVGIVFQNPETQFVGR-----------TVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 1133 --KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNTI 1189
+ GL+ + S GQ Q + L ++ + L+ DE T+ +D ++ ++L+
Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180
Query: 1190 RREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+ T++ + H + + D + ++ M GK+V EP+ +L
Sbjct: 181 KLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-14
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 34/210 (16%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+ + +L +R L L + G ++ + G +G+GKT+L+ AL L G+
Sbjct: 391 HGITLENLSLRTPDGQTL-LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQ 1118
I + S L +PQ P L G++R L + F+D E+
Sbjct: 450 ISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL------VA 492
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSM----GQRQLIGLGRVVLRRRQILVLDEAT 1174
VL K L ++ + + + W G++Q + R++L + + + LDEAT
Sbjct: 493 VLHKVGLGDLAER---------LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543
Query: 1175 ASIDNATDSILQNTIRREFANCTVITVAHR 1204
+++D T+ L ++ E + TVI+V HR
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-14
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 502 GMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL 561
L+ LP G T +GE G LSGG++QR+ LARAL D I LLD+P LDA+TA L
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 562 FTEYVMGALSKKTVLLVTHQ 581
E ++ ALS +TV+L+TH
Sbjct: 511 -LEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTVL 576
LSGGQ+QR+ +ARAL D I L D+P LD++T K VM L + T++
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK-----EVMELLRELNKEAGTTIV 195
Query: 577 LVTHQVDFLPAFDSILLISGGEI 599
+VTH + D I+ + G+I
Sbjct: 196 VVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 42/230 (18%)
Query: 1025 TCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084
T G + ++G +G+GK+TL++ + P G+I+I+G+D T + ++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSML 76
Query: 1085 PQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE------GL 1136
Q+ LF+ +V N+ LS P +L +EK E GL
Sbjct: 77 FQENNLFAHLTVAQNIGLGLS------------PG-----LKLNAEQREKVEAAAAQVGL 119
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA-TDSILQ--NTIRREF 1193
+ + S GQRQ + L R ++R + IL+LDE +++D A +L + + E
Sbjct: 120 AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179
Query: 1194 ANCTVITVAH------RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDS 1237
T++ V H RIA V+ + +G++ ++LL + S
Sbjct: 180 KM-TLLMVTHHPEDAARIAD-----RVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 4e-14
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 60/264 (22%)
Query: 1005 EIYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP----- 1057
E+ +L + + +A +V + G++ + G +G+VG +GSGK+ L A+ L+
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI 62
Query: 1058 TGGKIIIDGLDITTIG---LYDLR-SNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV 1113
GG+I+ DG D+ ++ L +R + +I QDP +L+P+ +
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV----------M 105
Query: 1114 TIPSQVLEKCQLREVIQEKKEG-------LDSLVVQDGANW--------SMGQRQLIGLG 1158
TI Q+ E +L KKE L+ + + D S G RQ
Sbjct: 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ----- 160
Query: 1159 RVV-----LRRRQILVLDEATASID----NATDSILQNTIRREFANCTVITVAHRIATVM 1209
RV+ ++L+ DE T ++D +L+ ++RE +I + H + V
Sbjct: 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREK-GTALILITHDLGVVA 218
Query: 1210 D-CNMVLSMSDGKLVEYDEPKKLL 1232
+ + V M G++VE +++
Sbjct: 219 EIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ +L RY V+ G++ + + G +G++G G+GKTT + LV+P GKI+
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1064 IDGLDITTIGLYDLRSNLGII--PQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVL 1120
+DG DIT + ++ R+ LGI PQ+ ++F +V N+ + + E
Sbjct: 59 LDGQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------- 109
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
+ +L E+++E + L ++ S G+R+ + + R + + L+LDE A +D
Sbjct: 110 REEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167
Query: 1181 TDSILQNTIRR 1191
+Q I+
Sbjct: 168 AVQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 27/229 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ ++ R+ L I+ + E G G++G G+GKTT I + ++ P G+++
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQV--- 1119
DG + R+ +G +P++ L+ V L L+Q + E ++
Sbjct: 59 FDGKPLD----IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE--ARRRIDEW 112
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
LE+ +L E ++ E L S G +Q + V+ ++L+LDE + +D
Sbjct: 113 LERLELSEYANKRVEEL-----------SKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161
Query: 1180 ATDSILQNTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225
+L++ IR A TVI H++ V + C+ VL ++ G+ V Y
Sbjct: 162 VNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
L G T++GE+G LSGGQKQR+ +ARAL ++ + +LD+ SALDA++ + + +
Sbjct: 136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES-EQQVQQALY 194
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEI 599
++TVL++ H++ + D IL++ GG I
Sbjct: 195 DWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 49/178 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR---------LQGMDLKMLPFGDL 513
L+ +NL +K E A+ G G+GKSTL I+G P+ +G D+ LP +
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEILFKGEDITDLPPEER 74
Query: 514 TQIG-------------------ERGVN--LSGGQKQRIQLARALYQDRDIYLLDDPFSA 552
++G R VN SGG+K+R ++ + L + D+ +LD+P S
Sbjct: 75 ARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG 134
Query: 553 LD-------AKTAKFLFTEYVMGALSKKTVLLVTHQ---VDFLPAFDSILLISGGEII 600
LD A+ L E K+VL++TH +D++ D + ++ G I+
Sbjct: 135 LDIDALRLVAEVINKLREE-------GKSVLIITHYQRLLDYIKP-DRVHVLYDGRIV 184
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 6e-14
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 63/205 (30%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-----------------ELP---- 498
L+++NL+++ E + G G GKSTLL I G +LP
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 499 -------------------------RLQGMD-----------LKMLPFGDLTQIGER-GV 521
+L+G+ K+L L + R +
Sbjct: 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL---GLEHLLNRKPL 132
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE-YVMGALSKKTVLLVTH 580
LSGGQ+QR+ LARAL + ++LLD+P S LDAK + +E + T + VTH
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192
Query: 581 -QVDFLPAFDSILLISGGEIIQAAT 604
QV+ + D I++++ G I Q T
Sbjct: 193 DQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-14
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 1026 CTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085
TF G +VG +GSGK+TL++ + P G+++I+G+D+T D + ++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD--RPVSMLF 76
Query: 1086 QDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE------GLDSL 1139
Q+ LF+ +L +Q + P +L ++ E GL L
Sbjct: 77 QENNLFA-----HLT-----VEQNVGLGLSPG-----LKLTAEDRQAIEVALARVGLAGL 121
Query: 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ---NTIRREFANC 1196
+ S G+RQ + L RV++R + +L+LDE A++D A + + + E
Sbjct: 122 EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM- 180
Query: 1197 TVITVAH 1203
TV+ V H
Sbjct: 181 TVLMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 7e-14
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 64/209 (30%)
Query: 459 LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-----------MDLKM 507
L P L+NI+ +KP EK I G G+GKS+LL A+ + G + L
Sbjct: 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75
Query: 508 L-----------------------PFG-----------DLTQIGERGVNLSGG------- 526
L PFG + + E +L GG
Sbjct: 76 LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEE 135
Query: 527 --------QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLV 578
Q+Q + LARAL + I +LD+ +++D +T + + + A TVL +
Sbjct: 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ-KTIREAFKDCTVLTI 194
Query: 579 THQVDFLPAFDSILLISGGEIIQAATYDH 607
H++D + D IL++ G +++ +D
Sbjct: 195 AHRLDTIIDSDRILVLDKGRVVE---FDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-14
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T+IGE G LSGGQ+QRI LARALY D + +LD+P S LD++ L ++
Sbjct: 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL-AAAIL 516
Query: 568 GALSKK-TVLLVTHQVDFLPAFDSILLISGGEI 599
A ++ TV+++ H+ L + D IL++ G I
Sbjct: 517 AAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGG +QR+ LARAL + DI L+D+ FSALD + E + A +KT++ +TH
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189
Query: 582 VD-FLPAFDSILLISGGEIIQAATYDHLLVT-SQEF-QDLVNAHKETMGPETFGEHVSSK 638
+D + D I+++ GEI+Q T D +L + E+ ++ + K + E ++ +
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG--KVDLSQVFDAERIAQR 247
Query: 639 EDENEVKKVEDEGHNNTSPADQLIKKEERETG 670
+ + K D+G A QL++ E ++
Sbjct: 248 MNTGPITKTADKG---PRSALQLMRDERVDSL 276
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 58/190 (30%), Positives = 81/190 (42%), Gaps = 57/190 (30%)
Query: 468 LEVKPAEKFAICGEVGAGKSTLLAAILG-ELPR-----LQGMDLKMLP------------ 509
L E AI G G+GKSTLL I G E P+ + G+D+ P
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 510 ---FGDLT----------------------------QIGERGV------NLSGGQKQRIQ 532
F LT ++G G+ LSGG++QR+
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA 138
Query: 533 LARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKKTVLLVTHQV-DFLPAFDS 590
LAR L +D+ + LLD+PF+ALD A A+ L + A +K TVL+VTHQ D
Sbjct: 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198
Query: 591 ILLISGGEII 600
++ + G I
Sbjct: 199 VVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-14
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T IGE GV LSGGQ+QR+ +ARAL +D I +LD+ SALD ++ + V
Sbjct: 455 LPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESER-----LVQ 509
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL + +T L++ H++ + D I+++ G I++ T++ LL
Sbjct: 510 AALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 9e-14
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 45/175 (25%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQ--------GMDLKMLPF---- 510
L+N++ + KP E AI G GAGKSTLL A+ G L G L F
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 511 ----------GDLTQIGE--------RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA 552
LT + E RG LSGG+++R+ +A L + + LD+P S
Sbjct: 85 GYVPQDDILHPTLT-VRETLMFAAKLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 553 LDAKTAKFLFTEYVMGALSK-----KTVLLVTHQV--DFLPAFDSILLISGGEII 600
LD+ +A VM L + +T++ HQ + FD +LL+S G +I
Sbjct: 142 LDSSSALQ-----VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 71/210 (33%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-----------MDLKML 508
L +++ +K E + GE G+GKSTL AILG L G + ++
Sbjct: 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 509 -------------PFGDL-------TQIGE----------------------RGVN---- 522
P L QI E GV
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 523 --------LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKF---LFTEYVMGALS 571
LSGGQ+QR+ +ARAL + + + D+P SALD L + +
Sbjct: 138 VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK--LQEEL 195
Query: 572 KKTVLLVTHQVDFLPAF-DSILLISGGEII 600
T+L +TH + + D + ++ G+I+
Sbjct: 196 GLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 26/177 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+ G++ T G + V G G GKTTL+ L L+ P G++ +G + R+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
Query: 1080 NLGIIPQD---PTLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
L + P L S NL + + I + L L
Sbjct: 75 ILYLGHLPGLKPEL---SALENLHFWAAIHGGAQRTIED------ALAAVGLT------- 118
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
G + L A S GQ++ + L R+ L R + +LDE T ++D A ++L +R
Sbjct: 119 -GFEDLPA---AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-13
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ + G G++G G+GKTTL + + + PT G ++ DG DIT + ++ +
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE-IA 73
Query: 1080 NLGIIP--QDPTLFSG-SVRYNL-------------DPLSQFTDQEIWEVTIPSQVLEKC 1123
LGI Q P LF +V N+ ++ ++E E ++LE+
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERA--EELLERV 131
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA-----SID 1178
L ++ L S GQ++ + + R + ++L+LDE A +
Sbjct: 132 GLADLADRPAGEL-----------SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 1179 NATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
+ I + +R TV+ V H + VM + V + G+++
Sbjct: 181 ELAELIRE--LRER--GITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-13
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 22/214 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L G++ T G ++G G+GK+TL+ L + P G+I+IDG + D
Sbjct: 23 ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL- 81
Query: 1080 NLGI--IPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
GI + Q+ +L SV N+ F +E T ++++ +R +E L
Sbjct: 82 AAGIATVHQELSLVPNLSVAENI-----FLGREP---TRRFGLIDRKAMRRRAREL---L 130
Query: 1137 DSLVVQDG-----ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
L + + S+ QRQ++ + R + ++L+LDE TA++ L + IRR
Sbjct: 131 ARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRR 190
Query: 1192 EFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
A +I ++HR+ V + + + + DG++V
Sbjct: 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 36/247 (14%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG--- 1059
+E+ DL + Y L+ I ++G +G GK+TL+ L R+ +
Sbjct: 7 AIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1060 --GKIIIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWE 1112
G++++DG +I + + +LR +G++ Q P F S+ N+ L D+E+ E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 1113 VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
I L+K L + E K+ L + S GQ+Q + + R + + ++L++DE
Sbjct: 125 --IVESSLKKAALWD---EVKDRLH----KSALGLSGGQQQRLCIARALAVKPEVLLMDE 175
Query: 1173 ATASIDNATDSILQNTIRREFANCTVITVAH------RIA--TVMDCNMVLSMSDGKLVE 1224
T+++D + ++ I T++ V H R++ T G+LVE
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAF-------FYLGELVE 228
Query: 1225 YDEPKKL 1231
+ K+
Sbjct: 229 FGPTDKI 235
|
Length = 253 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
D++ +P G T++ E G ++SGGQKQRI LARAL D + +LD+ S LD T K +
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
+ L KT++ V H++ D I+++ G+II+ ++D LL + + L++
Sbjct: 653 NLL--NLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTV 575
LSGGQ+QR+ +ARAL Q + L D+P ++LD ++ VM L + TV
Sbjct: 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS-----RQVMDLLKRINREEGITV 198
Query: 576 LLVTHQVDFLPAF-DSILLISGGEII 600
++ HQVD + D I+ + G I+
Sbjct: 199 IVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 32/224 (14%)
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL-G 1082
++ T G + ++G GSGK+TL L ++EPT G+I+I+ + G Y RS
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIR 90
Query: 1083 IIPQDP-TLFSGSVRYN--LD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEGL 1136
+I QDP T + +R LD PL TD LE Q R+ I E + GL
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTD------------LEPEQRRKQIFETLRMVGL 138
Query: 1137 DSLVVQDGANW-----SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI-- 1189
+ D AN+ + GQ+Q + L R ++ R +I++ DEA AS+D + S L N +
Sbjct: 139 ----LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194
Query: 1190 RREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232
+E + I V I + + VL M +G++VE +L
Sbjct: 195 LQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 61/213 (28%), Positives = 85/213 (39%), Gaps = 67/213 (31%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELPR-----LQGMDLKMLP----- 509
L +++L++ E A+ G G+GK+TLL I G E P G D +P
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 510 ---------------------FG----------DLTQIGERGVNL--------------- 523
FG +I + L
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135
Query: 524 --SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL--FTEYVMGALSKKTVLLVT 579
SGGQ+QR+ LARAL + + LLD+PF ALDAK K L + + L TV VT
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTV-FVT 194
Query: 580 H-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
H Q + L D +++++ G I Q T YDH
Sbjct: 195 HDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 33/230 (14%)
Query: 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII----DGLDITTIGLYDLR 1078
++ + G G+VG +G+GKTTL + ++EPT G++ + + +D+T G D R
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PDGR 360
Query: 1079 SN----LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
+GI+ Q+ L+ R LD L++ E +P E +++ VI K
Sbjct: 361 GRAKRYIGILHQEYDLYPH--RTVLDNLTEAIGLE-----LPD---ELARMKAVITLKMV 410
Query: 1135 GLD-----SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-----NATDSI 1184
G D ++ + S G+R + L +V+++ +I++LDE T ++D + T SI
Sbjct: 411 GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470
Query: 1185 LQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
L+ RE T I V+H + V+D C+ M DGK+V+ +P++++
Sbjct: 471 LKA---REEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 64/192 (33%), Positives = 80/192 (41%), Gaps = 62/192 (32%)
Query: 463 LRNINLEVKPAEKF-AICGEVGAGKSTLL-------AAILGEL-------------PRLQ 501
L ++L + PA +F A+ G G GKSTLL GEL RL
Sbjct: 28 LNQLDLHI-PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86
Query: 502 GMDLKMLPFG---DLTQIGERG-----------------------VNLSGGQKQRIQLAR 535
D ++LP+ D +G +G LSGGQKQR+ LAR
Sbjct: 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALAR 146
Query: 536 ALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-------TVLLVTHQVDFLPAF 588
AL + LLD+P ALDA T M L + TVLLVTH V A
Sbjct: 147 ALIHRPGLLLLDEPLGALDA------LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAM 200
Query: 589 -DSILLISGGEI 599
D +LLI G+I
Sbjct: 201 ADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 63/199 (31%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLT 514
P L +I+L +K E I G G+GKSTLL + G L + G DL L +L
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR 74
Query: 515 Q-----------------------------------IGER------GVNLSGGQKQRIQ- 532
+ I ER V L G + +
Sbjct: 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134
Query: 533 ----------LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
+A L D DI LLD+P + LD + L ++ L KT+++VTH
Sbjct: 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE--LLKKLKAEGKTIIIVTH 192
Query: 581 QVDFLPAF-DSILLISGGE 598
+D L D ++++ G+
Sbjct: 193 DLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 29/246 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+EI ++ + + I+ + G + ++G +G GKTTL+ + +P+ G+I+
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFS-----GSVRYNLDPLSQFTDQEIWE-VTIPS 1117
+DG DIT + + +G++ Q LF +V + L + EI V
Sbjct: 64 LDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV---E 118
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+ LE L K L S GQ+Q + L R ++ ++L+LDE +++
Sbjct: 119 EALELVGLEGFADRKPHQL-----------SGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRI--ATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
D ++ ++ T + V H A M + + M+DG++ + P+++
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAM-SDRIAVMNDGRIEQVGTPEEIYE 226
Query: 1234 RQDSLF 1239
R + F
Sbjct: 227 RPATRF 232
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 35/247 (14%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----P 1057
+EI +L + Y L+ I ++G +G GK+TL+ +L R+ +
Sbjct: 1 AIEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1058 TGGKIIIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYN--LDPLSQFTDQEIWEV 1113
GK++ DG DI I + +LR +G++ Q P F S+ N P
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLH--------- 109
Query: 1114 TIPSQVLEKCQLREVIQE--KKEGL-----DSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166
+ +K +L E+++E KK L D L S GQ+Q + + R + +
Sbjct: 110 ----GIKDKKELDEIVEESLKKAALWDEVKDRLH-DSALGLSGGQQQRLCIARALAVEPE 164
Query: 1167 ILVLDEATASIDN-ATDSILQNTIRREFANCTVITVAHRIATVMDC-NMVLSMSDGKLVE 1224
+L+LDE T+++D AT I + I+ T++ V H + + DG+LVE
Sbjct: 165 VLLLDEPTSALDPIATGKIEE-LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223
Query: 1225 YDEPKKL 1231
Y +++
Sbjct: 224 YGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 44/261 (16%)
Query: 991 KNSPAPDWPPTGKVEIYDLQIRY--------RPNAPLV-LRGITCTFEGGHKIGVVGRTG 1041
D P +VE DL++ + R L + GI+ T G +G+VG +G
Sbjct: 266 PPPLPEDAPVLLEVE--DLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESG 323
Query: 1042 SGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYDLRSNLGIIPQDPTLFSGSVRYN 1098
SGK+TL AL RL+ G+I DG DI + + LR + ++ QDP GS
Sbjct: 324 SGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GS---- 375
Query: 1099 LDPLSQFTDQEIWEVTIPSQVLEKC-----QLREVIQEKKE-GLDSLVVQDGAN-----W 1147
L P + T +I + +V E + + VI+ +E GLD N +
Sbjct: 376 LSP--RMTVGQI--IEEGLRVHEPKLSAAERDQRVIEALEEVGLD----PATRNRYPHEF 427
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRI 1205
S GQRQ I + R ++ + ++++LDE T+++D + + + + +R + + + ++H +
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 1206 ATVMD-CNMVLSMSDGKLVEY 1225
A V C+ V+ M DGK+VE
Sbjct: 488 AVVRALCHRVIVMRDGKIVEQ 508
|
Length = 534 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
V+ ++ G +G++G G+GKTT + LV P GKI++D DIT + ++ R+
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRA 77
Query: 1080 NLGI--IPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
LGI +PQ+ ++F +V N+ + + +++ + K +L +++E +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD------LKKAERKEELDALLEEF--HI 129
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
L + S G+R+ + + R + + ++LDE A +D +Q I+
Sbjct: 130 THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
|
Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTV 575
LSGGQ+QR+ +ARAL Q I L D+P ++LD ++AK VM L TV
Sbjct: 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK-----KVMDILKDINQEDGITV 201
Query: 576 LLVTHQVDF-LPAFDSILLISGGEIIQ 601
++ HQVD D I+ + G I+
Sbjct: 202 IVNLHQVDLAKKYADRIIGLKAGRIVF 228
|
Length = 258 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 5e-13
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID------GLDITTIG 1073
+L+ IT G++G +GSGK+TL+ L RL+E KI +D G DI I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1074 LYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREV--I 1129
LR +G++ Q P F S+ N+ PL +E E+ +++E+C LR+V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI---KKIVEEC-LRKVGLW 140
Query: 1130 QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
+E + L+S Q S GQ+Q + + R + + ++L++DE T+ ID ++ I
Sbjct: 141 KEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 1190 RREFANCTVITVAH---RIATVMDCNMVLSMSDGKLVEY 1225
++ V+H ++A V D V + +G+LVE+
Sbjct: 197 TELKNEIAIVIVSHNPQQVARVAD--YVAFLYNGELVEW 233
|
Length = 257 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-13
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 503 MD-LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL 561
MD + + G T IGE GV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + +
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 562 FTEYVMGALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ + L K +T L++ H++ + D IL++ GEI++ T+ LL
Sbjct: 520 --QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL 566
|
Length = 582 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGG +QR+ LARAL D DI L+D+ FSALD + + E + + A +KT++ +TH
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH- 219
Query: 582 VDFLPAF---DSILLISGGEIIQAATYDHLLVT 611
D A D I ++ G ++Q T + +L
Sbjct: 220 -DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 53/242 (21%), Positives = 107/242 (44%), Gaps = 27/242 (11%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ DL RY+ + L+G++ + G K ++G G+GK+TL+ L + P G++
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDP--TLFSGSVRYNLDPLSQFTDQEIWE-VTIPSQVL 1120
+ G ++ +RS +G++ QDP +FS +V W+ V +
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV---------------WDDVAFGPVNM 108
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+ EV + +E L ++ + D + S GQ++ + + V+ ++VLDE A
Sbjct: 109 GLDK-DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
Query: 1176 SIDNATDSILQNTIRREFANCTVITVA-HRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
+D L + R + VA H + + + V+ + +G+++ + L
Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
Query: 1234 RQ 1235
Sbjct: 228 ED 229
|
Length = 274 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 1036 VVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-S 1094
++G +G GKTTL+ L +P G I++DG D+T + + LR + ++ Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 1095 VRYNLD-PLSQFTDQEIWEVTIPSQV---LEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150
V N+ L +++ I +V L QL E K L S G
Sbjct: 59 VEENVAFGLKM---RKVPRAEIKPRVLEALRLVQLEEFADRKPHQL-----------SGG 104
Query: 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAH--RIA 1206
Q+Q + L R ++ + +IL+LDE +++D +Q ++ E T + V H A
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164
Query: 1207 TVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
M + + M GK+ + P+++ +LF
Sbjct: 165 MTMSDRIAI-MRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 7e-13
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYD 1076
+L+G+ + G + +VG +GSGK+TL++ L L +P+ G++ + G + +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 1077 LRS-NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE- 1134
LR+ ++G + Q L NL L V +P ++ + K
Sbjct: 85 LRARHVGFVFQSFHLIP-----NLTALEN--------VALPLELRGESSADSRAGAKALL 131
Query: 1135 ---GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSI--LQNT 1188
GL + A S G++Q + L R R +L DE T ++D AT D I L
Sbjct: 132 EAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 1189 IRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
+ RE T++ V H C+ L + G+LVE
Sbjct: 192 LNRERGT-TLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 8e-13
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 1029 EGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL----RSNLGII 1084
G ++G +GSGK+T + L RL+EPT G+I IDG +I +L R +G++
Sbjct: 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMV 76
Query: 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEGLDSLVVQ 1142
Q LF T + + + + +E E K GL+ +
Sbjct: 77 FQQFALF-----------PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC--TVIT 1200
S G +Q +GL R + IL++DEA +++D +Q+ +++ A T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1201 VAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLLR 1233
+ H + + + ++ M G++V+ P ++LR
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 9e-13
Identities = 58/214 (27%), Positives = 85/214 (39%), Gaps = 68/214 (31%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR--------LQGMDLKMLP-- 509
N L +++LE++ E A+ G+ G GK+TLL AI G + + DL P
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 510 ------------------------FG-------------------DLTQIGERGVN---- 522
FG L +G+ +
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ 137
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK----TVLLV 578
LSGG +QRI +ARA+ + D+ LLD+P SALDA + E + AL ++ T+L V
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE--IAALHEELPELTILCV 195
Query: 579 TH-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
TH Q D L D ++ G + YD
Sbjct: 196 THDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 9e-13
Identities = 49/155 (31%), Positives = 61/155 (39%), Gaps = 63/155 (40%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK---------- 506
L +++L ++P E AI G GAGKSTLL A+ GEL RL G L
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 507 --MLP--------FG------------------------------DLTQIGERGV-NLSG 525
+LP F DL + R LSG
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSG 137
Query: 526 GQKQRIQLARALYQ------DRDIYLLDDPFSALD 554
G++QR+QLAR L Q LLD+P SALD
Sbjct: 138 GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
|
Length = 258 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE 496
+RA L +I A + +A L N ++ + N+ V G A + AA
Sbjct: 403 TRASLRRNI----AVVFQDAGLFNRSIED-NIRV---------GRPDATDEEMRAA---- 444
Query: 497 LPRLQGMDLKML-PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA 555
R Q D P G T +GERG LSGG++QR+ +ARAL +D I +LD+ SALD
Sbjct: 445 AERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504
Query: 556 KT-AKFLFTEYVMGALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610
+T AK V AL + +T ++ H++ + D IL+ G ++++ ++D L+
Sbjct: 505 ETEAK------VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558
Query: 611 TSQEFQDLVNA 621
F L+ A
Sbjct: 559 RGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTVLLV 578
LSGGQ+QR+ +ARAL + I L D+P LD+KTAK + ++ L+K KT+++V
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--LLRELNKERGKTIIMV 199
Query: 579 THQVDFLPAFDSILLISGGEI 599
TH + D ++ + G+I
Sbjct: 200 THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 22/129 (17%)
Query: 485 GKSTLLAAILGELPRLQGMDLKMLPFGDLTQIG------ERGVNLSGGQKQRIQLARALY 538
G ++LG K L ++G +R LSGGQ+QR+ +ARAL
Sbjct: 106 GYKPTWRSLLGRFSEED----KERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161
Query: 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTVLLVTHQVDFLPAF-DSI 591
Q D+ L D+P ++LD KT+K VM L + TV++ HQVD + D I
Sbjct: 162 QQPDLILADEPIASLDPKTSK-----QVMDYLKRINKEDGITVIINLHQVDLAKKYADRI 216
Query: 592 LLISGGEII 600
+ + GEI+
Sbjct: 217 VGLKAGEIV 225
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-------LGELPRLQGMDLKMLP------ 509
L++++ E+KP ++ I G G GKS+L A+ G + +G DL LP
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 510 FGDLTQI-----GERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
G L + + LSGG++QR+ AR L LD+ SALD ++ L
Sbjct: 77 LGTLREQLIYPWDDV---LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL--- 130
Query: 565 YVMGALSKK--TVLLVTHQVDFLPAFDSILLISG 596
L + TV+ V H+ D +L + G
Sbjct: 131 --YQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 53/163 (32%), Positives = 69/163 (42%), Gaps = 58/163 (35%)
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RL 500
+K D++W L +R +L V+ E+ AI G GAGKSTLL I G L L
Sbjct: 2 LKLTDITWLYHHL--PMR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58
Query: 501 QGMD----------LKML-----PFGDLT------------------------QIGER-G 520
G D + ML F LT I + G
Sbjct: 59 NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG 118
Query: 521 VN---------LSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
+ LSGGQ+QR+ LAR L +++ I LLD+PFSALD
Sbjct: 119 IEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 22/202 (10%)
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--LDITTIGLYDL---RSNLGIIPQDP 1088
G+ G +G+GK+TL+ + L +P GG I+++G L + + +L + +G++ Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKI-NLPPQQRKIGLVFQQY 84
Query: 1089 TLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
LF +VR NL + + ++ + E++ GLD L+ + A
Sbjct: 85 ALFPHLNVRENL----------AFGLKRKRNREDRISVDELLD--LLGLDHLLNRYPAQL 132
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRI 1205
S G++Q + L R + + ++L+LDE +++D A L +++ N VI V H +
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 1206 ATV-MDCNMVLSMSDGKLVEYD 1226
+ + ++ M DG+L
Sbjct: 193 SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 20/242 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E DL Y + L I +I V+G G+GK+TL +++PT G ++
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDP--TLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQV 1119
I G IT + ++R +G++ Q+P +FS +V ++ P++ D+E T+ +V
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEE----TVAHRV 118
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
+ GL+ L + + S G+++ + + V+ Q+LVLDE TA +D
Sbjct: 119 SSALHML--------GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 1180 ATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
L + + E TVI H++ V + + + M G++V Y +++ + D
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
Query: 1237 SL 1238
L
Sbjct: 231 LL 232
|
Length = 277 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 18/222 (8%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080
+ G+ G G +G G+GKTT I L L+ PT G + G D+ +R +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 1081 LGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ--EKKEGLD 1137
+GI+PQ ++ + R NL+ + + +P E+ + E+++ E E D
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYG-------LPKDEAEE-RAEELLELFELGEAAD 119
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANC 1196
V +S G R+ + + ++ + +L LDE T +D T + + IR
Sbjct: 120 RPVGT----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 1197 TVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRRQDS 1237
T++ H + C+ + + G+++ P++L RR
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 45/264 (17%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
+L ++ T G +IG+VGR G+GK+TL+ L +EP G++ LR
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------GLR 67
Query: 1079 SNLGIIPQDPTLFSG-SVRYNL------------------DPLSQFTDQEIWEVTIPSQV 1119
+G + Q+P L +V + L+ D+ + E+ +
Sbjct: 68 --VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEE 125
Query: 1120 LEKCQLREVIQEKKEGL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
L+ L +E GL + ++ S G R+ + L R +L +L+LDE T +D
Sbjct: 126 LDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Query: 1179 NATDSILQNTIRREFANCTVITVAH-R--IATVMDCNMVLSMSDGKLVEYD-------EP 1228
+ L++ ++R TVI V+H R + V +L + GKL Y E
Sbjct: 186 LESIEWLEDYLKR--YPGTVIVVSHDRYFLDNV--ATHILELDRGKLTPYKGNYSSYLEQ 241
Query: 1229 KKLLRRQDSLFAQLVKEYWSHAEK 1252
K RQ++ + ++ + ++
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQE 265
|
Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 53/193 (27%), Positives = 75/193 (38%), Gaps = 59/193 (30%)
Query: 467 NLEVKPAEKFAICGEVGAGKST---LLAAIL----GELPRLQGMDLKMLP---------- 509
+L V E AI G GAGKST L+A + G + ++ L
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI-KVNDQSHTGLAPYQRPVSMLF 76
Query: 510 -----FGDLT----------------------------QIG-----ERGVN-LSGGQKQR 530
F LT Q+G +R LSGGQ+QR
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQV-DFLPAF 588
+ LAR L + I LLD+PFSALD + + ++ T+L+VTH + D
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196
Query: 589 DSILLISGGEIIQ 601
I ++S G+I
Sbjct: 197 SQIAVVSQGKIKV 209
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 58/193 (30%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP---------------------- 498
L +++L + E + G G GK+TLL I G +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78
Query: 499 ---------------------RLQGMD--------LKMLPFGDLTQIGERGV-NLSGGQK 528
+L+G++ +ML L + + LSGG +
Sbjct: 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMR 138
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQVD---F 584
QR+ +ARAL + + LLD+PF ALDA T + + + + + K VLL+TH ++ F
Sbjct: 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198
Query: 585 LPAFDSILLISGG 597
L ++++S G
Sbjct: 199 LA--TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 39/247 (15%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL-----VEPTGGKI 1062
DL + Y ++GI FE ++G +GSGK+T + +L R+ + G+I
Sbjct: 25 DLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 1063 IIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYN----LDPLSQFTDQEIWEVTIP 1116
+ G+DI I +Y++R ++G++ Q P F+ S+ N L+ + + E+
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
S L++ L + + K+ L + S GQ+Q + + R + + IL++DE ++
Sbjct: 143 S--LKQAALWD---QVKDDLH----KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNM--VLSMSD-------GKLVEYDE 1227
+D + L+ T+ N T+I V H NM SD G L+EYD+
Sbjct: 194 LDPISTMQLEETMFELKKNYTIIIVTH--------NMQQAARASDYTAFFYLGDLIEYDK 245
Query: 1228 PKKLLRR 1234
+ +
Sbjct: 246 TRNIFTN 252
|
Length = 267 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 11/224 (4%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074
P L G++ G + V+G G+GK+TL++A+ ++PT G+I+IDG+D+T +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 1075 YDLRSNLGIIPQDP---TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
+ L + QDP T ++ NL + + + RE +
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLAR 133
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNT-- 1188
GL++ + S GQRQ + L L +IL+LDE TA++D + +++ T
Sbjct: 134 LGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193
Query: 1189 IRREFANCTVITVAHRIATVMDC-NMVLSMSDGKLV-EYDEPKK 1230
I E T + V H + +D N ++ + GK+V + +K
Sbjct: 194 IVEEH-KLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEK 236
|
Length = 263 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E ++ Y PN L GI + G + +VG +G+GK+TL+ +++ PT G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1064 IDGLDITTIGLYD-----LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE-VTIPS 1117
++G D++ L LR +G++ QD L D+ ++E V
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLLP--------------DRNVYENVAFAL 103
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDE 1172
+V RE+ + L+ + + S G++Q + + R ++ IL+ DE
Sbjct: 104 EVTGVPP-REIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162
Query: 1173 ATASIDNAT 1181
T ++D T
Sbjct: 163 PTGNLDPDT 171
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 61/201 (30%), Positives = 84/201 (41%), Gaps = 61/201 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP------- 509
L ++L++K E F + G G GK+TLL I G E P L G D+ LP
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 510 -------------------FG-------------------DLTQIGERG----VNLSGGQ 527
FG DL Q+ LSGGQ
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQ 135
Query: 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH-QVD 583
+QR+ +ARAL + + LLD+P ALD K K + E + L K+ T + VTH Q +
Sbjct: 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE--LKRLQKELGITFVFVTHDQEE 193
Query: 584 FLPAFDSILLISGGEIIQAAT 604
L D I +++ G+I Q T
Sbjct: 194 ALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-12
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 9/104 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G T++GE+G LSGGQKQRI +ARAL + + +LD+ SALDA+ E ++
Sbjct: 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE------CEQLL 656
Query: 568 GALSK---KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHL 608
+TVLL+ H++ + D IL++ G +++ T+ L
Sbjct: 657 QESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLV 578
NLSGGQKQR+ +A L +I LLD+P + LD K + L + KT+++V
Sbjct: 138 NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK--EEGGKTIIIV 195
Query: 579 THQVDFLPAF-DSILLISGGEII 600
TH ++ + + D ++++ G+I+
Sbjct: 196 THDLELVLEYADRVVVLDDGKIL 218
|
Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 62/260 (23%), Positives = 112/260 (43%), Gaps = 35/260 (13%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+EI + + VL I + E G + ++G +G GK+TL+ + L +PT G++
Sbjct: 3 LLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYN----LDPLSQFTDQEIWEVTIPS 1117
++DG +T G ++G + Q+ L +V N L+ + +
Sbjct: 61 LLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK--- 112
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
++LE L + L S G RQ + + R + R ++L+LDE ++
Sbjct: 113 ELLELVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIA-TVMDCNMVLSMSDG-----KLVEYDEPK 1229
D T LQ+ + R E TV+ V H + V + V+ +S+ + +E D P+
Sbjct: 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPR 221
Query: 1230 KLLRRQDSLFAQLVKEYWSH 1249
+R D F +L +E
Sbjct: 222 PRIRG-DPEFLELREELLEE 240
|
Length = 248 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080
+RG++ G G++G G+GKTT I L L++PT G+ + G D+ ++R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR-EVRRR 74
Query: 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140
+GI+ QD + +D + T E + + + RE I E + + L
Sbjct: 75 IGIVFQDLS---------VDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE 123
Query: 1141 VQDG--ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR---REFAN 1195
D +S G R+ + + R ++ R ++L LDE T +D T + + I EF
Sbjct: 124 AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-G 182
Query: 1196 CTVITVAHRIATVMD-----CNMVLSMSDGKLVEYDEPKKL 1231
T++ H M+ C+ V + G+++ P++L
Sbjct: 183 MTILLTTH----YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (167), Expect = 3e-12
Identities = 54/243 (22%), Positives = 113/243 (46%), Gaps = 21/243 (8%)
Query: 1004 VEIYDLQIRYRPNAPL-VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+E+ +L +Y + + L G++ + G + ++G+ GSGK+T + L E GK+
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
IDG +T +++LR +G++ Q+P +QF + + +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPD-------------NQFVGATVEDDVAFGMENQG 111
Query: 1123 CQLREVIQEKKEGLDSLVVQD-----GANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
E+I+ E L ++ + D A S GQ+Q + + ++ R +I++LDE+T+ +
Sbjct: 112 IPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSML 171
Query: 1178 DNATDSILQNTIR--REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235
D + I +E TV+++ H + + +L M G++++ P +L
Sbjct: 172 DPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 1236 DSL 1238
+ +
Sbjct: 232 EDM 234
|
Length = 277 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 1035 GVVGRTGSGKTTLISALFRL---VEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLF 1091
++G +G GK+T + R+ + G + I+G D+ + LR N+G++ Q P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 1092 SGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148
S+ N+ L + E + L+K L E +++K + Q+ S
Sbjct: 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALS 144
Query: 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIAT- 1207
GQ+Q + + R + + ++L+LDE T+++D + +++ ++ N ++I V H +
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQG 204
Query: 1208 --VMDCNMVLSMSDGKLVEYDEPKKLL 1232
V D + G+L+E+ E K+
Sbjct: 205 KRVADYTAFFHL--GELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-12
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
+ ++ +K E + GE G GKSTL ILG +G D+ L
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER 88
Query: 510 -------FGDLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKF 560
G + R + LSGGQ+QRI +ARAL + + + D+P SALD A+
Sbjct: 89 VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148
Query: 561 LFTEYVMGALSKK---TVLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
L + L ++ T L ++H + + D I ++ G+I++ + +
Sbjct: 149 LNL---LKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 23/218 (10%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDI--TTIG 1073
L GI+ FE ++G +G GK+T + L R+ + G+I +G +I + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
L +LR +G++ Q PT F SV N+ ++ D+E+ I +V E + + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKEL----IDQRVEESLKQAAIWK 135
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
E K+ LD ++ +S GQ+Q I + R + R ++++LDE T+++D + S ++ T+
Sbjct: 136 ETKDNLD----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM 191
Query: 1191 REFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEY 1225
T I V H + + D L +G L+E
Sbjct: 192 ELKHQYTFIMVTHNLQQAGRISDQTAFL--MNGDLIEA 227
|
Length = 251 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 16/224 (7%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L + G + ++G +GSGK+TL+ + L +P G+I ++G D T + D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--R 72
Query: 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138
+G + Q LF +VR N+ ++ + I ++V E L E++Q L+
Sbjct: 73 KIGFVFQHYALFKHLTVRDNI--AFGLEIRKHPKAKIKARVEE---LLELVQ-----LEG 122
Query: 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANC 1196
L + S GQRQ + L R + Q+L+LDE ++D L++ +R+ + +
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1197 TVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
T + V H M+ + ++ MS+GK+ + P ++ + F
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 4e-12
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 16/230 (6%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
QI + L ++ + E G ++G +GSGK+T++ L RL+EPT G+++IDG+DI
Sbjct: 33 QILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI 92
Query: 1070 TTIGLYDLRS----NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL 1125
I +LR + ++ Q + L P D + + + E+ +
Sbjct: 93 AKISDAELREVRRKKIAMVFQS---------FALMPHMTVLDNTAFGMELAGINAEERRE 143
Query: 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL 1185
+ + ++ GL++ S G RQ +GL R + IL++DEA +++D + +
Sbjct: 144 KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
Query: 1186 QNTIRREFANC--TVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLL 1232
Q+ + + A T++ ++H + M + + M +G++V+ P ++L
Sbjct: 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 25/246 (10%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTT---LISALFRLVEPTGG 1060
VE + Y + L I+ + G ++G GSGK+T LI+ L +
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1061 KIIIDGLDITTIGLYDLRSNLGIIPQDP-TLFSGS-----VRYNLDPLSQFTDQEIWEVT 1114
KI +DG+ +T ++D+R +GI+ Q+P F G+ V + L+ E+ +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEM--IK 122
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
I VL + + I + AN S GQ+Q + + ++ +I++LDE+T
Sbjct: 123 IVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 1175 ASIDNATDSILQNTIR--REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+ +D A + IR ++ N TVI++ H I + VL + DGKL+ P ++
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231
Query: 1233 RRQDSL 1238
+ + L
Sbjct: 232 SKVEML 237
|
Length = 282 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 5e-12
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 472 PAEKFAICGEVGAGKSTLLAAILGELPRLQG---------MDLKMLPFGDLTQIGERGVN 522
P E I G G+GK+TL A+ EL G + ++L L +G + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL------SKKTVL 576
SG + R+ LA A D+ +LD+ S LDA+ L + L TV+
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 577 LVTHQVDFL 585
L T+ L
Sbjct: 121 LTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 6e-12
Identities = 26/85 (30%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLL 577
LSGGQKQR+ +ARAL + I L D+ SALD +T + + ++ ++++ T++L
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLKDINRELGLTIVL 197
Query: 578 VTHQVDFLPAF-DSILLISGGEIIQ 601
+TH+++ + D + ++ G +++
Sbjct: 198 ITHEMEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 62/248 (25%), Positives = 119/248 (47%), Gaps = 31/248 (12%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E DL+ Y P+ L+GI E G + ++G G+GK+TL +++PT G+++
Sbjct: 2 LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1064 IDG--LDITTIGLYDLRSNLGIIPQDP--TLFSGSVRYNL--DPLSQFTDQEIWEVTIPS 1117
I G + L ++R +GI+ Q+P LF+ +V ++ PL+ +E
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-------- 112
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDE 1172
EV + KE L ++ ++ N S GQ++ + + ++ + +I+VLDE
Sbjct: 113 ---------EVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163
Query: 1173 ATASID-NATDSILQNTIRREFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKK 1230
T+ +D I++ T+I H + V + + V MSDGK+++ PK+
Sbjct: 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
Query: 1231 LLRRQDSL 1238
+ +++
Sbjct: 224 VFSDIETI 231
|
Length = 275 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-12
Identities = 120/576 (20%), Positives = 215/576 (37%), Gaps = 103/576 (17%)
Query: 687 FLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFL 746
+ +L++ A I L+A I Q+L + L+++ +G+ ++F++ + L
Sbjct: 18 VMALSLASGALGIGLLAFINQAL--------IETADTSLLVLPEFLGLLLLFMVSS---L 66
Query: 747 VVYLGLEA-SESIFYKL----MSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801
+ LGL + YKL + + P+ + R+L+ ++SD+ I S
Sbjct: 67 ISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLP 126
Query: 802 TIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNY-------YFATAKELMRIN 854
+ + + + L L+ ++ L+ V I + I + A A+E
Sbjct: 127 ELVQAIIL-TLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARET---- 181
Query: 855 GTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLE 914
L + + G + N ER + +L A + H
Sbjct: 182 ---EDKLQNDYQTILEGRKELTL--NRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAV 236
Query: 915 TLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGL-SLNDFLVYSVNNQCIVGNLIVSVE 973
S I+L G G + +ALS G S N + + L+ +V
Sbjct: 237 NWSNIMLL-----------GLIGLVFW-LALSLGWASTNVAATIVLVLLFLRTPLLSAVG 284
Query: 974 RLNQYMRIP-----------SEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLR 1022
L + + + PDW +E+ +++ Y+ NA +
Sbjct: 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVG 340
Query: 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082
I T + G + ++G GSGK+TL L L +P G+I++DG ++ L D R
Sbjct: 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK--- 397
Query: 1083 IIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ 1142
LFS + F+D +++ + + QL E ++ E +
Sbjct: 398 -------LFS----------AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN 440
Query: 1143 DGA----NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC-- 1196
DG S GQ++ + L +L R ILVLDE A D A RREF
Sbjct: 441 DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA--------FRREFYQVLL 492
Query: 1197 --------TVITVAHRIATVMDCNMVLSMSDGKLVE 1224
T+ ++H + + +L M +G+L E
Sbjct: 493 PLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 506 KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY 565
+ LP G T +GERG+ LSGG+KQR+ +AR + ++ I +LD+ SALD T +
Sbjct: 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ-AIQAA 441
Query: 566 VMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ + +T L++ H++ + D I+++ G I++ T++ LL
Sbjct: 442 LREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK-FLFTEYVMGALSK--KTVLLVT 579
LSGGQ+QR+ +ARAL D + L D+P SALD + L VM L++ T+++VT
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVL---DVMKDLAEEGMTMIIVT 193
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQEF 615
H++ F D ++ + G+II+ + +
Sbjct: 194 HEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230
|
Length = 240 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 54/192 (28%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---MDLKMLPFGDLTQIG-- 517
L +I+ V+ E F + G GAGK+T + ILG + G D K L +IG
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 518 --ERGV----------------------------------------------NLSGGQKQ 529
ERG+ LS G +Q
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQ 135
Query: 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF- 588
++Q A+ D ++ +LD+PFS LD + L A + KTV+L THQ++ +
Sbjct: 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELC 195
Query: 589 DSILLISGGEII 600
D +LL++ G +
Sbjct: 196 DRVLLLNKGRAV 207
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 513 LTQIGERG----VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMG 568
L Q+ E LSGGQ+QR+ LARAL I LLD+P SALD K + E
Sbjct: 87 LVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT- 145
Query: 569 ALSKK---TVLLVTH-QVDFLPAFDSILLISGGEIIQAAT 604
+ ++ T + VTH Q + + D I ++ G+I Q T
Sbjct: 146 -IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 34/169 (20%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLTQI 516
+R+++ EV+ E I G VG G++ L A+ G P L G + D +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 517 G---------ERGV--------N------LSGGQKQRIQLARALYQDRDIYLLDDPFSAL 553
G G+ N LSGG +Q++ LAR L +D + +LD+P +
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV 135
Query: 554 DAKTAKFLFTEYVMGALSK--KTVLLVTHQVDFLPAF-DSILLISGGEI 599
D ++ ++ L+ K VLL++ ++D L D IL++ G I
Sbjct: 136 DVGAKAEIYR--LIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-11
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGG +QR+ LARAL D DI L+D+ FSALD + E + + A KKT++ +TH
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH- 223
Query: 582 VDFLPAF---DSILLISGGEIIQAATYDHLLV 610
D A D I ++ GEI+Q T + +L+
Sbjct: 224 -DLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 39/198 (19%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL ++ + G + ++G G+GK+TL+ + LV P G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 1080 NLGIIPQ----DPTLFSGSVRY-NLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
+G +PQ D TL R+ L P ++ D +P L++ Q +I +
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED------ILP--ALKRVQAGHLIDAPMQ 119
Query: 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSI--LQNTIRR 1191
L S G+ Q + L R +L R Q+LVLDE T +D N ++ L + +RR
Sbjct: 120 KL-----------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168
Query: 1192 EFANCTVITVAHRIATVM 1209
E +C V+ V+H + VM
Sbjct: 169 EL-DCAVLMVSHDLHLVM 185
|
Length = 251 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 42/239 (17%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG----LYD 1076
+ + FE G +VG+TGSGK+TLI + L++PT G + +D + IT +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1077 LRSNLGIIPQDP--TLFSGSV-----------RYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
+R +G++ Q P LF +V + NLD + + + + ++ V+ +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATD 1182
+ S GQ + I + ++ I+VLDE TA +D +
Sbjct: 143 PFQ--------------------MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182
Query: 1183 SILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
+++ +++ + N T+I V+H + V + V+ M +G +V PK+L + + L
Sbjct: 183 QVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
|
Length = 286 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY--VMGALSKK--TVLLV 578
LSGGQ+QR+ +ARAL + + L D+P SALD + E VM L+++ T+++V
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG----EVLDVMKDLAEEGMTMVVV 191
Query: 579 THQVDF-LPAFDSILLISGGEI 599
TH++ F D ++ + G I
Sbjct: 192 THEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 66/206 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-LGELPR-----LQGMDLKMLPFGDLT-- 514
L N++L V + + + G GAGKSTL+ + L E P + G DL L +LT
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 515 --QIG--------------------------------ERGV------------------N 522
QIG +R V N
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN 140
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQKQR+ +ARAL + + L D+ SALD T + + ++ ++++ T+LL+T
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE--LLKEINRRLGLTILLIT 198
Query: 580 HQVDFLPAF-DSILLISGGEIIQAAT 604
H++D + D + +IS GE+I+ T
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 25/241 (10%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--- 1066
++ R A L I+ + G + ++G +G+GK+TL+ + L P G+I ++G
Sbjct: 7 NVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66
Query: 1067 LDITTIGLYDLRSNLGIIPQDPTLFSGS-----VRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
D++ + + D +G + Q LF + + L + E I ++V E
Sbjct: 67 FDVSNLAVRD--RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEE 120
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
LR V L+ L + A S GQRQ + L R + ++L+LDE ++D
Sbjct: 121 --LLRLV------QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 1182 DSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
L+ +R+ + T + V H ++ + V+ ++ G++ + P ++ S
Sbjct: 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232
Query: 1239 F 1239
F
Sbjct: 233 F 233
|
Length = 345 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD--- 1076
+L + T E G ++G +GSGK+TL++ + L + G++ ++G + +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1077 -LRSNLGIIPQDPTLF-SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--K 1132
R LG + Q+ L + +V NLD + + + L K + RE +E +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLD------------LGLKYKKLSKKEKREKKKEALE 120
Query: 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQ--NTI 1189
K GL+ + Q S G++Q + L R +L+ +++ DE T S+D D +L +
Sbjct: 121 KVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 1190 RREFANCTVITVAH 1203
E T+I V H
Sbjct: 181 NDE--GKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT----IGLYDLRSNLG 1082
T G + GR+GSGKTTLI + L P G+I+++G + I L + +G
Sbjct: 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 1083 IIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141
+ Q+ LF SVR NL + + + ++ E++ G+ L+
Sbjct: 79 YVFQEARLFPHLSVRGNL-------RYGMKRARPSERRISFERVIELL-----GIGHLLG 126
Query: 1142 QDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQ--NTIRREFANCTV 1198
+ S G++Q + +GR +L ++L++DE A++D+ IL + EF +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPI 185
Query: 1199 ITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ V+H + V+ + V+ + DG++ ++ D
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFR---LVEPT--GGKIIIDGLDITTIGLY 1075
L+GI+ E + +G +G GK+T + R L+ T G+I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1076 --DLRSNLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
+LR N+G++ Q P F S+ N+ ++ D + + EV
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
+ KE +L S GQ+Q + + R + +L++DE +++D + + ++ I
Sbjct: 139 KLKESAFAL--------SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH 190
Query: 1191 REFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+ T++ V H + A V D M G++VEYD+ KK+
Sbjct: 191 ELKKDYTIVIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKIF 233
|
Length = 250 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL G+ + G +G+VG G+GKTTL+ A+ + PT G +++ G D+ +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1080 NLGIIPQDPTL-FSGSVRYNLD----P-LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+ +PQD +L F VR ++ P S+F + + +E+
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT---------- 127
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
G+ + + S G+RQ + L R + + +L+LDE TAS+D
Sbjct: 128 -GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
++ G++ T G + + G GSGKTTL+ + L+ P G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 1079 SNLGIIPQD---PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
LG ++ P L +V NL+ + F E + LE L +
Sbjct: 76 HYLG--HRNAMKPAL---TVAENLEFWAAFLGGEE---LDIAAALEAVGLAPLAHLP--- 124
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA- 1194
S GQ++ + L R+++ R I +LDE TA++D A ++ IR A
Sbjct: 125 --------FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1195 NCTVITVAHRIATVMDCNMVLSM 1217
VI H I + L +
Sbjct: 177 GGIVIAATH-IPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYD 1076
VL I G + + G +GSGKTTL++ + L G + + G ++ L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1077 LRSNLGIIPQDPTLF-----SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
LR N+G I Q L +V+ L+ + QE E +LE L + +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
L S GQ+Q + + R ++ R ++++ DE TA++D+ + + +++
Sbjct: 138 YPHNL-----------SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK 186
Query: 1192 EFA--NCTVITVAH--RIATVMDCNMVLSMSDGKLV 1223
CT++ V H RI V D ++ M DGKL+
Sbjct: 187 LAREQGCTILIVTHDNRILDVAD--RIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G ++ E G NLSGGQ+QR+++ARAL ++ I +LD+ SALD +T K +
Sbjct: 601 RPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI-----ID 655
Query: 568 GALSKK--TVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619
L ++ T ++V H++ + D I+++ G+++Q T++ L + L+
Sbjct: 656 DNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 52/187 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLL---AAIL----GEL-----------------P 498
L++I+ E+ E+ I G GAGKSTLL A I G++ P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 499 RLQGMD---LKMLPFGDLTQIGERGV------------------NLSGGQKQRIQLARAL 537
L G + L+ L G + + V S G R+ + A
Sbjct: 103 ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT 162
Query: 538 YQDRDIYLLDDPFSALDA---KTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILL 593
+ + DI LLD+ + DA + E V KT++LV+H + + + D +
Sbjct: 163 HVEPDILLLDEVLAVGDAAFQEKCLERLNELV---EKNKTIVLVSHDLGAIKQYCDRAIW 219
Query: 594 ISGGEII 600
+ G+I
Sbjct: 220 LEHGQIR 226
|
Length = 249 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L+ I+ G ++G++G G+GK+TL+ + + +PT GK+ + G + L +L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA--PLIEL-- 96
Query: 1080 NLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
G P+ +G R N+ + T +EI E +++E +L + I +
Sbjct: 97 GAGFDPE----LTG--RENIYLRGLILGLTRKEIDEKV--DEIIEFAELGDFIDQP---- 144
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-- 1194
V+ +S G + IL+LDE A D A + E
Sbjct: 145 ----VK---TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERL-NELVEK 196
Query: 1195 NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
N T++ V+H + + C+ + + G++ P++++
Sbjct: 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E +++ Y P L ++ G + + G +G+GKTTL+ L+ + P+ G++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1064 IDGLDITTI---GLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE-VTIPSQV 1119
I G D+ + L LR +G++ QD + L P D+ ++E V +P +V
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQD---------FRLLP-----DRTVYENVALPLEV 106
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
K + RE+ + L + ++ A+ S G++Q + + R ++ +L+ DE T
Sbjct: 107 RGKKE-REIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165
Query: 1175 ASIDNAT-DSILQNTIRREFANCTVITVAH 1203
++D + IL R TVI H
Sbjct: 166 GNLDPDLSERILDLLKRLNKRGTTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 35/228 (15%)
Query: 1037 VGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDI----TTIGLYDLRSNLGIIPQD 1087
+G +G GK+T + R+ + G++ IDG+D+ T + L LR+ +G++ Q
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL--LRAKVGMVFQK 94
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEGL-----DSLV 1140
P F S+ N+ + + K +L E++++ GL D L
Sbjct: 95 PNPFPKSIYDNV----------AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL- 143
Query: 1141 VQDGA-NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVI 1199
+D A S GQ+Q + + R + + +L++DE +++D ++++N I+ N T+I
Sbjct: 144 -KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTII 202
Query: 1200 TVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
V H + + V G++VEY+ +++ + S K Y
Sbjct: 203 VVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS---SKTKRY 247
|
Length = 251 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 42/204 (20%), Positives = 72/204 (35%), Gaps = 57/204 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI----------------------------- 493
+R+++ E + E + GE GAGK+TLL I
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 494 ---------------------LGELPRLQGMDLK------MLPFGDLTQIGERGVNLSGG 526
L L ++K L + R S G
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTG 137
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586
KQ++ +ARAL D I +LD+P S LD +T + + V+ +H + +
Sbjct: 138 MKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVE 197
Query: 587 AF-DSILLISGGEIIQAATYDHLL 609
A D ++++ GE++ + + L
Sbjct: 198 ALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 79/414 (19%), Positives = 147/414 (35%), Gaps = 84/414 (20%)
Query: 253 LQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEV 312
L L A + Y S + + T++ +++T+ G L +K+ ++K +
Sbjct: 134 LTLGSAAYLAYLSPKMFLL-TVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTI 192
Query: 313 LVNMKVLKLYA-------WDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIG 365
L K L L + Y + E L + + WS+ +L+G
Sbjct: 193 LEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHL-------LAVNWSNIMLLG 245
Query: 366 AATLLTCYFLGIPLNPSNV-FTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEA 424
L+ L + +NV T + L L+ P+ + + A+V+ ++IA A
Sbjct: 246 LIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELA 305
Query: 425 PE---LQNSDMQQVCSRAELEHSIFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAIC 479
P EL + F +++ + + P INL +K E +
Sbjct: 306 PYKADFPRPQAFPDWKTLELRNVRF------AYQDNAFHVGP----INLTIKRGELVFLI 355
Query: 480 GEVGAGKSTLLAAILG------------------------------------ELPRLQGM 503
G G+GKSTL + G +L G
Sbjct: 356 GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415
Query: 504 D-----------LKMLPFGDLTQIGERGV---NLSGGQKQRIQLARALYQDRDIYLLDDP 549
+ L+ L T + + LS GQK+R+ L AL ++RDI +LD+
Sbjct: 416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475
Query: 550 FSALDAKTAKFLFTEYV--MGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQ 601
+ D + + + + KT+ ++H + D +L + G++ +
Sbjct: 476 AADQDPAFRREFYQVLLPLLKEQG-KTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L+ ++ G +IG++GR G+GK+TL+ L + P G + + G + +GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL----- 91
Query: 1080 NLGIIPQDPTLFSG--SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ--EKKEG 1135
G +P L +G ++ N L + +EI E + E+I+ E +
Sbjct: 92 GGGF---NPEL-TGRENIYLNGR-LLGLSRKEIDEK-----------IDEIIEFSELGDF 135
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195
+D V +S G + + IL++DE A D A Q +R
Sbjct: 136 IDLPVK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 1196 C-TVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226
TVI V+H +++ C+ L + GK+
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 7e-11
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 511 GDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
G T +GERG LSGG++QR+ +ARA+ ++ I +LD+ SALD +T + + AL
Sbjct: 460 GYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE--ARVKNAIDAL 517
Query: 571 SK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
K +T ++ H++ + D +L + G +I+ ++ L+ F L+
Sbjct: 518 RKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 16/161 (9%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-R 1078
+LRG++ G V+GR G GKTTL+ L L+ G I +DG DIT + ++ R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQ-LREVIQEKKEGL 1136
+ + +PQ +F +V NL L+ IP ++ E L+E++ +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL--LTGLAALPRRSRKIPDEIYELFPVLKEMLGRR---- 128
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
G + S GQ+Q + + R ++ R ++L+LDE T I
Sbjct: 129 -------GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 54/210 (25%), Positives = 78/210 (37%), Gaps = 70/210 (33%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
LR ++LEV E + G G GK+TLL ++G LP RL G D+ LP
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 510 -----------FGDLT-----QIG---------------------------ERGVNLSGG 526
F LT G RG +LSGG
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGG 135
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALD-------AKTAKFLFTEYVMGALSKKTVLLVT 579
Q+Q++ +ARAL + LLD+P + + + L E M +LLV
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM------AILLVE 189
Query: 580 HQVDF-LPAFDSILLISGGEIIQAATYDHL 608
+DF D ++ G ++ + D L
Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTH- 580
LSGGQ+QR+ L RA+ ++ ++L+D+P S LDAK + E + T + VTH
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190
Query: 581 QVDFLPAFDSILLISGGEIIQ 601
QV+ + D I +++ G+I Q
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQ 211
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 26/211 (12%)
Query: 1004 VEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+E+ ++ Y A L I+ + E G + +VG +G GK+TL+ + L PT G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFS-GSVRYN--LDPLSQFTDQEIWEVTIPSQ 1118
+++DG +T + G + Q L +V N L Q + +
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-ERAEE 114
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+LE L L S G RQ + L R + +L+LDE +++D
Sbjct: 115 LLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 1179 NATDSILQN---TIRREFANCTVITVAHRIA 1206
T LQ I RE TV+ V H I
Sbjct: 164 ALTREQLQEELLDIWRE-TGKTVLLVTHDID 193
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 62/200 (31%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP----- 509
L ++L V E A+ G GAGK+TLL I+G LP R G D+ LP
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 510 -------------FGDLT-----QIGE----------------------------RGVNL 523
F +LT +G L
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTL 133
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTHQ 581
SGG++Q + +ARAL + LLD+P L K + +F + L + T+LLV
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE--AIRELRDEGVTILLVEQN 191
Query: 582 VDF-LPAFDSILLISGGEII 600
F L D ++ G ++
Sbjct: 192 ARFALEIADRAYVLERGRVV 211
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 38/243 (15%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
+ R +L ++ T G + ++G G+GK+TL+ AL + P G++ ++G +
Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66
Query: 1070 TTIGLYDLRSNLGIIPQDPTL-FSGSVR----YNLDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
+L ++PQ +L F +V P + + + + L +
Sbjct: 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE---DDALVAAALAQV- 122
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV------VLRRRQILVLDEATASID 1178
L L +D S G++Q + L RV + L+LDE T+++D
Sbjct: 123 ----------DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
Query: 1179 NATDSIL--QNTIR--REFA---NCTVITVAHRIA-TVMDCNMVLSMSDGKLVEYDEPKK 1230
+ + +R R+ A VI V H + + ++ + G+LV P +
Sbjct: 173 -----LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
Query: 1231 LLR 1233
+L
Sbjct: 228 VLT 230
|
Length = 258 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 1036 VVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQDP 1088
++G +G GKTTL+ ++ R+ + GKI G DI + + + R +G++ Q P
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93
Query: 1089 TLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
T F S+ N+ + + + + + + EV E + L
Sbjct: 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL------ 147
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205
S GQ+Q + + R + ++++LDE T+++D ++ + N T++ V H I
Sbjct: 148 --SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNI 205
Query: 1206 ATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
+ + + M G+L+EY ++++ R + +L +EY
Sbjct: 206 GQAIRIADYIAFMYRGELIEYGPTREIVERPKN---KLTEEY 244
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 15/197 (7%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
+ Y +L I+ + G + G +G GK+TL+ + L+ PT G ++ +G DI
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71
Query: 1070 TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVI 1129
+T+ R + Q PTLF +V NL I+ I +Q + + +
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNL----------IFPWQIRNQQPDPAIFLDDL 121
Query: 1130 QEKKEGLDSLVVQDGAN-WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT 1188
+ + L ++ S G++Q I L R + ++L+LDE T+++D + +
Sbjct: 122 E--RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI 179
Query: 1189 IRR--EFANCTVITVAH 1203
I R N V+ V H
Sbjct: 180 IHRYVREQNIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 507 MLPFGDLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY 565
L L Q +R LSGG +QR+ LARA + I L+D+PFSALD L E
Sbjct: 148 QLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDEL 207
Query: 566 V-MGALSKKTVLLVTHQVDFLPAF---DSILLISGGEIIQAAT 604
+ + + KKT++ V+H +D A + I ++ GG IIQ T
Sbjct: 208 LELQSKLKKTIVFVSHDLD--EALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LSGGQKQR+ +A AL +D+ + D+P S LD K + + E ++ L+ K V+++TH
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GE-LIRELAAQGKAVIVITH 184
Query: 581 QVDFLPAF-DSILLISGGEII 600
+FL D +LL++ G I+
Sbjct: 185 DYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 26/246 (10%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ ++ R+ + L ++ G + ++G +GSGKTTL+ + L P G I+
Sbjct: 3 IEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNL------DPLSQFTDQEIWEVTIP 1116
G D T + + + N+G + Q LF +V N+ P S+ E I
Sbjct: 61 FGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP----EAEIR 114
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
++V E L +++Q LD L + A S GQRQ + L R + ++L+LDE +
Sbjct: 115 AKVHE---LLKLVQ-----LDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 1177 IDNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
+D L+ +RR + + T + V H ++ + V+ M+ G++ + P ++
Sbjct: 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226
Query: 1234 RQDSLF 1239
S F
Sbjct: 227 HPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 506 KMLPFGDLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE 564
++L L + R LSGG+KQR+ LARAL ++ LLD+PFSALD L E
Sbjct: 114 ELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
Query: 565 YVMGALSKK---TVLLVTHQVD--FLPAFDSILLISGGEIIQAA 603
+ + K V+ VTH + A D I+++ G +
Sbjct: 174 --LKQIKKNLNIPVIFVTHDLSEAEYLA-DRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYD 1076
VL+G++ + G + +VG +GSGK+TL+ L L PT G+++ +G ++ +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1077 LRS-NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV--LEKCQLREVIQE-- 1131
LR+ LG I Q L L FT E V +P + + +E E
Sbjct: 80 LRNKKLGFIYQFHHL-----------LPDFTALE--NVAMPLLIGKKSVKEAKERAYEML 126
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR- 1190
+K GL+ + + S G+RQ + + R ++ + +++ DE T ++DN I+ + +
Sbjct: 127 EKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1191 --REFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
RE N + + V H + + VL M DG+L
Sbjct: 187 LNREL-NTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 2e-10
Identities = 97/538 (18%), Positives = 180/538 (33%), Gaps = 34/538 (6%)
Query: 702 VAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYK 761
+A I I I + + + G+ + + + Y G+ ++
Sbjct: 32 LAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIA 91
Query: 762 LMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGAL 821
L + AP+ D ++ ++ D+ I+ L I IA+ + L L
Sbjct: 92 LCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAI-FFFCIAYLAYL 150
Query: 822 TWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNE 881
+ + + + I + Q F + H GA ++
Sbjct: 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR 210
Query: 882 ERFFAKNLDLIDAYASSFFHSFTAREWLI--QRLETLSAIVLATSALCTTLLHKGHKGAG 939
FA A + H I + L +L AL + A
Sbjct: 211 RLSFAHGAIQESANNIADLH-IIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAA 269
Query: 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQY-MRIPSEAPELV---QKNSPA 995
+ L+ L + L V+ I+ ++ +RL + R PEL N
Sbjct: 270 ISAFVLAL-LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328
Query: 996 PDWPPT-GKVEIYDLQIRYRP---NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISAL 1051
+ +E+ D+ + + + L I G + +VG G GK+TL
Sbjct: 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLF 388
Query: 1052 FRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIW 1111
L P G+I++DG ++ D R I D LF D L + E
Sbjct: 389 CGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF--------DDLIGPDEGEHA 440
Query: 1112 EVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLD 1171
+ Q L++ ++ K ++ S GQ++ + L L R IL+ D
Sbjct: 441 SLDNAQQYLQRLEI-----ADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495
Query: 1172 EATASIDNA-----TDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
E A D A + +L + R+ T+I ++H + ++ ++ G +V+
Sbjct: 496 EWAADQDPAFKRFFYEELLPDLKRQ---GKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 60/210 (28%), Positives = 84/210 (40%), Gaps = 75/210 (35%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMD----------- 504
L +I+L++ + A+ G G+GK+TLL I G + R G D
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI-RFHGTDVSRLHARDRKV 76
Query: 505 ----------------------LKMLPFGD-------------------LTQIGER-GVN 522
L +LP + L + +R
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ 136
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK-------FLFTEYVMGALSKKTV 575
LSGGQKQR+ LARAL + I LLD+PF ALDA+ K L E K T
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL------KFTS 190
Query: 576 LLVTH-QVDFLPAFDSILLISGGEIIQAAT 604
+ VTH Q + + D ++++S G I QA T
Sbjct: 191 VFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 54/177 (30%), Positives = 72/177 (40%), Gaps = 57/177 (32%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDL------KMLPF 510
L+ +NL ++ E ++ G G GKSTLL I G P L+G + +M+ F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 511 G--------------------------------------DLTQIGE----RGVNLSGGQK 528
L + E R LSGG K
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVD 583
QR+ +ARAL + LLD+PF ALDA T L E +M + TVL+VTH VD
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNL-QEELMQIWEEHRVTVLMVTHDVD 176
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-10
Identities = 56/209 (26%), Positives = 81/209 (38%), Gaps = 64/209 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
LR ++LEV+ E A+ G GAGK+TLL I+G + G D+ LP
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 510 -----------FGDLT-----QIG-----------------------------ERGVNLS 524
F LT +G +R LS
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLS 138
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTHQ 581
GG++Q + +ARAL + LLD+P L K + +F + L K+ T+LLV
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE--AIKELRKEGGMTILLVEQN 196
Query: 582 VDF-LPAFDSILLISGGEIIQAATYDHLL 609
F L D ++ G I+ + T LL
Sbjct: 197 ARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 34/245 (13%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG- 1066
DL RY+ + P VL+G+ F G+VG G GK+TL L L+ P G ++ G
Sbjct: 6 DLWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 1067 -LDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQL 1125
LD + GL LR + + QDP +Q+I+ I S + +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP------------------EQQIFYTDIDSDIAFSLRN 105
Query: 1126 REVIQEK--KEGLDSLVVQDGANW--------SMGQRQLIGLGRVVLRRRQILVLDEATA 1175
V + + + ++L + D ++ S GQ++ + + ++ + + L+LDE TA
Sbjct: 106 LGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTA 165
Query: 1176 SIDNATDSILQNTIRREFANCT-VITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
+D A + + IRR A VI +H I + + + V + G+++ + P ++
Sbjct: 166 GLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
Query: 1234 RQDSL 1238
+++
Sbjct: 226 CTEAM 230
|
Length = 271 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 513 LTQIG-ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
LT+IG +SGG+++R+ +A L D + +LD+P S LD+ TA L + A
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 572 KKTVLLVTHQ--VDFLPAFDSILLISGGEII 600
+ V+L HQ D FD ILL+S GEI+
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 39/181 (21%)
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN-LG 1082
++ T G + ++G GSGK+TL L ++EPT G+++ID + G Y RS +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIR 90
Query: 1083 IIPQDPT-----------LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
+I QDP+ + +R N D + +++I E LR+V
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIET-----------LRQV--- 136
Query: 1132 KKEGLDSLVVQDGANW-----SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ 1186
GL + D A++ + GQ+Q +GL R ++ R ++++ DEA AS+D + S L
Sbjct: 137 ---GL----LPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
Query: 1187 N 1187
N
Sbjct: 190 N 190
|
Length = 267 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 64/229 (27%)
Query: 1036 VVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRS--------NLGII 1084
++G +GSGK+TL+ + RL+EPT GK++IDG DI + L +LR + ++
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144
P L +V + L+ + E E + LE L + + L
Sbjct: 115 PHRTVL--ENVAFGLE-VQGVPRAEREERAA--EALELVGLEGWEHKYPDEL-------- 161
Query: 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC-------- 1196
S G +Q +GL R + IL++DEA S L IRRE +
Sbjct: 162 ---SGGMQQRVGLARALAVDPDILLMDEAF--------SALDPLIRREMQDELLRLQAEL 210
Query: 1197 --TVITVAH----------RIATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
T++ + H RIA M DG+LV+ P+++L
Sbjct: 211 QKTIVFITHDLDEALRLGDRIAI---------MKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYD 1076
VL ++ + E G +G++GR+G GK+TL L L +P G + G D+ +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1077 LRSNLGIIPQD-PTLFSG--SVRYNL-DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE- 1131
R ++ ++ QD P+ + +VR + +PL T L++ + + I E
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS------------LDESEQKARIAEL 133
Query: 1132 -KKEGLDSLVVQD-GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD-SILQ-- 1186
GL S S GQ Q I + R + + +++VLDEA +++D IL+
Sbjct: 134 LDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 1187 NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+++ F + + H + V C V M G++VE
Sbjct: 194 RKLQQAFGTAYLF-ITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKFL-FTEYVMGALSKKTVLLVTH 580
LS G+++R+ +ARAL +D ++ +LD+P LD + L E + + +L VTH
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
Query: 581 QVDFLPA-FDSILLISGGEIIQAAT 604
+ +P F LL+ GE++
Sbjct: 232 HAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 49/191 (25%), Positives = 70/191 (36%), Gaps = 64/191 (33%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP---------RLQGMDLKMLP---- 509
L N+N + E + G G GKSTLL+ ++G L L L MLP
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 510 -----FGD---------------------------------LTQIGERGV------NLSG 525
F D L + G G LSG
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSG 137
Query: 526 GQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTEYVMGALSKKTVLLVTHQ 581
GQ+ R+ L RAL LLD+PFS LD + +++F+E + + VTH
Sbjct: 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIP---TVQVTHD 194
Query: 582 VDFLPAFDSIL 592
+ +PA ++
Sbjct: 195 LQDVPAGSRVI 205
|
Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 36/245 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+L ++ + G ++G G GK+TL+ RL+ P G + + I+ + L
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1080 NLGIIPQDPTLFSG-SVR----YNLDP-------LSQFTDQEIWEVTIPSQVLEKCQLRE 1127
L ++PQ G +VR Y P LS D Q +E+ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSA-EDNARVN-----QAMEQTRINH 130
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
+ + L S GQRQ L V+ + +++LDE T +D L
Sbjct: 131 LADRRLTDL-----------SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179
Query: 1188 TIRREFANC-TVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP-----KKLLRRQDSLFA 1240
+R TV+TV H + C+ ++ +++G ++ P LLR + A
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEA 239
Query: 1241 QLVKE 1245
++ E
Sbjct: 240 EIHPE 244
|
Length = 255 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 32/230 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT---IG--- 1073
VL GI + G + ++G +GSGKTTL+ + L +P G I + + I T +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1074 --LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
+ LR ++G + Q+ +NL F + + E I V+ K + +E
Sbjct: 78 GLIRQLRQHVGFVFQN---------FNL-----FPHRTVLENIIEGPVIVKGEPKEEATA 123
Query: 1132 KKEGLDSLVVQDGAN------WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL 1185
+ L + V G S GQ+Q + + R + R ++++ DE T+++D +
Sbjct: 124 RARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEV 183
Query: 1186 QNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232
NTI R+ A T++ V H ++ D + + M G++VE K L
Sbjct: 184 LNTI-RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 33/224 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+ ++ G +G++G G+GKTTL + + +P+ G +I G DIT + + +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 1080 NLGIIP--QDPTLFSG-SVRYNL-------DPLSQFTDQEIWEVTIPS------QVLEKC 1123
LGI Q LF G +V N+ LS + ++LE
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
L E+ L S GQ++ + + R + + ++L+LDE A + N ++
Sbjct: 138 GLGELADRPAGNL-----------SYGQQRRLEIARALATQPKLLLLDEPAAGL-NPEET 185
Query: 1184 I-LQNTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
L IR R+ T++ + H + VM + ++ ++ G+++
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 47/191 (24%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG-LDITTIGLYDL-R 1078
L ++ + + G ++G G+GKTTL+ + P G+++ DG D+T + + + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIP-SQVLEKCQLREVIQEKKEGL 1136
+ +G Q PT+F +VR NL+ L+ D+ ++ + E+ ++ E++ GL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLA--TIGL 137
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA----TDSILQNTIRRE 1192
+ A S GQ+Q + +G ++ + ++L+LDE A + +A T +L++ +
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK- 196
Query: 1193 FANCTVITVAH 1203
+++ V H
Sbjct: 197 ---HSILVVEH 204
|
Length = 249 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-10
Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 42/273 (15%)
Query: 972 VERLNQYMRIPSEAPELVQKNSPAPDWPPTGK------VEIYDLQIRYRPNAPLVLRGIT 1025
++RL + +E + + A +PP GK +E ++ Y L+L+ ++
Sbjct: 284 IKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDLS 342
Query: 1026 CTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII-DGLDITTIGLYDLRSNLGII 1084
+ G +I +VG G+GK+TL+ L + P G + + + + I G +D + +
Sbjct: 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKI---GYFD-QHRDELD 398
Query: 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144
P T+ + LS+ + E + L + QEK + L
Sbjct: 399 PDK-TVL--------EELSEGF-PDGDEQEV-RAYLGRFGFTGEDQEKP--VGVL----- 440
Query: 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAH- 1203
S G++ + L +++L+ +L+LDE T +D + L+ + +F TV+ V+H
Sbjct: 441 ---SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLVSHD 495
Query: 1204 -----RIAT-VMDCNMVLSMSDGKLVEYDEPKK 1230
R+AT + + +G +Y E KK
Sbjct: 496 RYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKK 528
|
Length = 530 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 6e-10
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 52/187 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------------------------ 498
L++++ EV E+ + G GAGKSTLL + G P
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97
Query: 499 ------------RLQGMDLK----MLPF-GDLTQIGERG----VNLSGGQKQRIQLARAL 537
RL G+ K + + +++G+ S G K R+ A A
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT 157
Query: 538 YQDRDIYLLDDPFSALDAKT---AKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILL 593
+ DI L+D+ + DA + E + KTV+LV+H + D L+
Sbjct: 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG---KTVILVSHDPSSIKRLCDRALV 214
Query: 594 ISGGEII 600
+ G+I
Sbjct: 215 LEKGKIR 221
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-10
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-- 1077
VL+GI+ G + +VG +GSGK+TL++ L L +PT G + G D+ T+ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1078 --RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KK 1133
R + G I Q RY+L LS T + EV LE+ Q QE ++
Sbjct: 83 LRREHFGFIFQ---------RYHL--LSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQR 131
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR--R 1191
GL+ V + S GQ+Q + + R ++ Q+++ DE T ++D+ + + + R
Sbjct: 132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 1192 EFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
+ + TVI V H V+ + DG++V
Sbjct: 192 DRGH-TVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 13/221 (5%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
L++ G+ T G G++G GSGK+TL+ L + P G + + G+D+ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 1079 SNLGIIPQD-PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEG 1135
+ ++ QD T +VR ++ L + + +W P V+ +
Sbjct: 75 RRVALVEQDSDTAVPLTVR-DVVALGRIPHRSLWAGDSPHDA-------AVVDRALARTE 126
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195
L L +D + S G+RQ + + R + + ++L+LDE T +D +R A
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 1196 -CTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234
TV+ H + C+ V+ + G++V P+++L
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 496 ELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA 555
E+ +L+ M +K LP G + E G N S GQ+Q LARA + I ++D+ +++D
Sbjct: 131 EIAQLKNM-VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM 189
Query: 556 KTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQE- 614
T L + VM A + +TV+ + H+V + D +L++S G +++ T ++LL +QE
Sbjct: 190 ATENIL-QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLL--AQED 246
Query: 615 --FQDLVNAHK 623
F LV K
Sbjct: 247 GVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-09
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 499 RLQGM--DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556
R+ G+ D++ +P G T I E G LSGGQ+QR+ +ARAL + I L D+ SALD +
Sbjct: 563 RMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622
Query: 557 TAKFLFTEYVMGALS--KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQE 614
T V +L K T +++ H++ + D I ++ G ++Q TYD L+
Sbjct: 623 T-----QAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGL 677
Query: 615 FQDLV 619
F L
Sbjct: 678 FAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 359 SSPILIGAATLLTCYFLGIPLNPSNVF--TFLATLRILQ----EPIRLLPDVFGAFIEAK 412
+ +L +L + G P LA L +L E LP +
Sbjct: 242 ALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVR 301
Query: 413 VSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKP 472
+ +RI L+A ++ + A ++ DLS P L ++L++ P
Sbjct: 302 AAAERIVEVLDAAGPV-AEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPP 360
Query: 473 AEKFAICGEVGAGKSTLLAAILGELPRLQG 502
E+ AI G G+GKSTLLA + G L LQG
Sbjct: 361 GERVAILGPSGSGKSTLLATLAGLLDPLQG 390
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 28/206 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL+ I E G + + G TGSGKT+L+ + +EP+ GKI G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS----QVLEKCQLREVIQEKKEG 1135
+ Q + G+++ N+ I+ V+ V++ CQL E I + E
Sbjct: 99 RISFSSQFSWIMPGTIKENI----------IFGVSYDEYRYKSVVKACQLEEDITKFPEK 148
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD-SILQNTIRREFA 1194
++++ + G S GQR I L R V + + +LD +D T+ I ++ + + A
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDG 1220
N T I V ++ + + +L + +G
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L + G + ++G +G GKTT + + L EPT G+I I G D+T + D
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD--R 72
Query: 1080 NLGIIPQDPTLFSG-SVRYNLD-PLSQ--FTDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
++ ++ Q+ L+ +V N+ L EI E +V E Q+ ++ K +
Sbjct: 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERV--REVAELLQIEHLLDRKPKQ 130
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
L S GQRQ + LGR ++R ++ ++DE +++D
Sbjct: 131 L-----------SGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 32/224 (14%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRS 1079
++ + + G ++G G+GK+TL+ LF L +P G+I +DG ++ D +R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE---- 1134
+G++ Q L +V N+ + + R+ KE
Sbjct: 80 GIGMVHQHFMLVPTLTVAENI------------ILGLEPSKGGLIDRRQARARIKELSER 127
Query: 1135 -GL----DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI-DNATDSILQNT 1188
GL D+ V A+ S+G++Q + + + + R ++L+LDE TA + D + +
Sbjct: 128 YGLPVDPDAKV----ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-I 182
Query: 1189 IRREFAN-CTVITVAHRIATVMD-CNMVLSMSDGKLVE-YDEPK 1229
+RR A T+I + H++ VM + V + GK+V D
Sbjct: 183 LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVA 226
|
Length = 501 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 61/204 (29%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP---- 509
+ N++L + E + G G GK+T+L I G E P L G D+ +P
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 510 ----------------------FG----------------------DLTQIGERGV-NLS 524
FG L + +R LS
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLS 146
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH- 580
GGQ+QR+ +ARA+ + LLD+ SALD K K + E + AL +K T + VTH
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQRKLGITFVFVTHD 204
Query: 581 QVDFLPAFDSILLISGGEIIQAAT 604
Q + L D I+++ G I Q T
Sbjct: 205 QEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 13/207 (6%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS- 1079
L I G +VG+ G GK++L+ A+ ++ GK+ + + RS
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1080 ---NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
++ Q P L + +V N+ S F Q V + C L+ I G
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRY------KAVTDACSLQPDIDLLPFGD 130
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNTIRREFAN 1195
+ + + G N S GQRQ I + R + + I+ LD+ +++D + +D ++Q I + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1196 --CTVITVAHRIATVMDCNMVLSMSDG 1220
T++ V H++ + + +++M DG
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ LARAL + ++ LLD+P SALD TAK E ++ L K+ T+++VTH
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI---EELIAELKKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYD 1076
V++ I+ T G +G+VG +GSGK+T AL RL+ + G+I DG + + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE-VTIPSQVLEKCQLRE--VIQEKK 1133
+R + ++ QDP + S+ L+ L Q I E + + L Q RE VI +
Sbjct: 360 VRHRIQVVFQDP---NSSLNPRLNVL-----QIIEEGLRVHQPTLSAAQ-REQQVIAVME 410
Query: 1134 E-GLDSLVVQD-GANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
E GLD A +S GQRQ I + R ++ + +++LDE T+S+D
Sbjct: 411 EVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 69/275 (25%), Positives = 106/275 (38%), Gaps = 62/275 (22%)
Query: 361 PILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIAN 420
PILI A YF G + + + + + D + A + + +L R+A
Sbjct: 307 PILIAA----PRYFSGQ-ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAE 361
Query: 421 FLEA-------PELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPA 473
F +A E +++ +H I ++ +LS L +N EV+P
Sbjct: 362 FRQALEAAQMDTEKPARTGRRIDFDDNADHGITLE--NLSLRTPDGQTLLSELNFEVRPG 419
Query: 474 EKFAICGEVGAGKSTLLAAILGELP-------RLQGMDLKMLP----------------- 509
E+ I GE GAGK++LL A+ G P L LP
Sbjct: 420 ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYP 479
Query: 510 -----FGD------LTQIG-----ER--GVN-----LSGGQKQRIQLARALYQDRDIYLL 546
F D L ++G ER + LSGG++QR+ AR L L
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539
Query: 547 DDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
D+ SALD +T L+ + + L TV+ V H+
Sbjct: 540 DEATSALDEETEDRLY-QLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
+LSGG ++R+ LARAL ++ D+ LLD+P + LD ++ ++L +Y+ TV++V+H
Sbjct: 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLKR--YPGTVIVVSHD 209
Query: 582 VDFL-PAFDSILLISGGEII 600
FL IL + G++
Sbjct: 210 RYFLDNVATHILELDRGKLT 229
|
Length = 530 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKKTVLLVT 579
LSGGQ+QR+ +ARAL + L D+ SALD + + L + + T+LLVT
Sbjct: 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQE 614
H++ F F D + G I++ D + +E
Sbjct: 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKE 240
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 27/178 (15%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG------ 1073
+ ++ T G + + G G+GKTTL+ L L+ P G++ G I +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1074 -LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK 1132
LY L GI + NL +F TI + L + L +
Sbjct: 77 LLY-LGHQPGIKT------ELTALENLHFWQRFHGSGN-AATIW-EALAQVGLAGLEDLP 127
Query: 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
S GQ++ + L R+ L + +LDE ++D ++L +
Sbjct: 128 -----------VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA 174
|
Length = 209 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGG +QR+ LARAL + DI L+D+ FSALD + E V + A ++T++ ++H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 582 VD-FLPAFDSILLISGGEIIQAATYDHLL 609
+D + D I ++ GE++Q T D +L
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
NLSGGQKQR+ +ARAL + L D+P +ALD+K+ + + +M L+++ T+L+V
Sbjct: 141 NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE--LMQKLAREQGCTILIV 198
Query: 579 THQVDFLPAFDSILLISGGEI 599
TH L D I+ + G++
Sbjct: 199 THDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---L 1077
L+G+T G + G +G+GK+TL+ + + P+ GKI G DIT + + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
R +G+I QD L Y+ V IP ++ ++ + LD
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYD-------------NVAIP-LIIAGASGDDIRRRVSAALD 123
Query: 1138 SLVVQDGA-----NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA-TDSILQNTIRR 1191
+ + D A S G++Q +G+ R V+ + +L+ DE T ++D+A ++ IL+ +
Sbjct: 124 KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR--LFE 181
Query: 1192 EF--ANCTVITVAHRIATVMDCNM-VLSMSDGKLV 1223
EF TV+ H I + + +L++SDG L
Sbjct: 182 EFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 5e-09
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 58/203 (28%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L + P+ ++L+ ++ + G ++ + G +G+GK++L AL L G+I
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEI--WEVTIPSQVLE 1121
+ +L +PQ P L G++R +Q I W VL
Sbjct: 60 MPE-----------GEDLLFLPQRPYLPLGTLR----------EQLIYPW-----DDVL- 92
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
S G++Q + R++L + + + LDEAT+++D +
Sbjct: 93 --------------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
Query: 1182 DSILQNTIRREFANCTVITVAHR 1204
+ L ++ TVI+V HR
Sbjct: 127 EDRLYQLLKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-09
Identities = 49/195 (25%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502
L++++ + ++ AI G GAGKSTLL + GEL L G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395
Query: 503 --------MDLKMLPFGDLTQIGERGV----------------NLSGGQKQRIQLARALY 538
++ F D + R LSGG+K R+ LA+ L
Sbjct: 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455
Query: 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK------TVLLVTHQVDFLPA-FDSI 591
Q ++ LLD+P + LD ++ + AL + TVLLV+H FL I
Sbjct: 456 QPPNLLLLDEPTNHLDIES---------LEALEEALLDFEGTVLLVSHDRYFLDRVATRI 506
Query: 592 LLISGGEIIQAATYD 606
L+ Y+
Sbjct: 507 WLVEDKVEEFEGGYE 521
|
Length = 530 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 35/224 (15%)
Query: 1022 RGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT----IGLYDL 1077
RGIT F G +GSGKT+LI+ + L P G+I ++G + I L
Sbjct: 24 RGITALF---------GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74
Query: 1078 RSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
+ +G + QD LF +VR NL + + Q +++ G+
Sbjct: 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRA--------------QFDQLVALL--GI 118
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQ--NTIRREF 1193
+ L+ + S G++Q + +GR +L ++L++DE AS+D IL +R E
Sbjct: 119 EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 1194 ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
N ++ V+H + V+ + V+ + +GK+ +++ D
Sbjct: 179 -NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
|
Length = 352 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 62/224 (27%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080
+ G++ + + G +G+VG +G GK+TL + L EPT G+I+
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----------------- 71
Query: 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140
+ +++ + +E E +VLE L +V GL
Sbjct: 72 ----------------FEGKDITKLSKEERRE-----RVLEL--LEKV------GLP--- 99
Query: 1141 VQDGANW-----SMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQNT---IRR 1191
++ S GQRQ IG+ R + +++V DE +++D + IL N ++
Sbjct: 100 -EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQE 157
Query: 1192 EFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRR 1234
E T + ++H ++ V + + M GK+VE +++
Sbjct: 158 EL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 33/216 (15%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ + G +G +G G+GK+T + + + P G + + G D+ +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1080 NLGIIPQDPTL-----------FSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREV 1128
N+G +P+ L F + Y + Q Q + +++E LR
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGI-YGMK--GQLLKQRV------EEMIELVGLR-P 125
Query: 1129 IQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT 1188
Q KK G S G RQ +GL + ++ ++L+LDE T +D ++N
Sbjct: 126 EQHKKIG----------QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV 175
Query: 1189 IRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
I+ + T+I H + V C+ V+ ++ GK+V
Sbjct: 176 IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 54/213 (25%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISAL--FRLVEPTGGKIIIDGLDITTIGLYDL 1077
+L+ ++ + G ++G +G+GK+TL++AL R G+++I+G +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING---RPLDKRSF 80
Query: 1078 RSNLGIIPQD----PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
R +G +PQD PTL +VR L F +LR
Sbjct: 81 RKIIGYVPQDDILHPTL---TVRETL----MFA----------------AKLR------- 110
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRRE- 1192
GL S G+R+ + + ++ +L LDE T+ +D+++ + + +RR
Sbjct: 111 -GL-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158
Query: 1193 FANCTVITVAHRIATVM--DCNMVLSMSDGKLV 1223
T+I H+ ++ + + +L +S G+++
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ 1086
G + ++G +G+GK+TL++ + +EP G I ++ T + Y + + ++ Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSMLFQ 77
Query: 1087 DPTLFSG-SVRYN----LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141
+ LF+ +VR N L P + ++ ++ + Q+ G+ +
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLN------------AEQQEKVVDAAQQV--GIADYLD 123
Query: 1142 QDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
+ S GQRQ + L R ++R IL+LDE +++D
Sbjct: 124 RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 469 EVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQ-------IGERGV 521
VK E I G G GK+T + + G+L +P GD + + +
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL----------IPNGDNDEWDGITPVYKPQYI 70
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALD-------AKTAKFLFTEYVMGALSKKT 574
+LSGG+ QR+ +A AL ++ YL D+P + LD A+ + L E KKT
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE------GKKT 124
Query: 575 VLLVTHQVDFLPAFDSILLISGGE 598
L+V H + L + + GE
Sbjct: 125 ALVVEHDLAVLDYLSDRIHVFEGE 148
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 34/245 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--LDITTI----G 1073
L IT G + ++G +G+GK++L+ L L P G + I G D +
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+ DLR N+G++ Q +YNL P T QE + P +VL + + +
Sbjct: 77 IRDLRRNVGMVFQ---------QYNLWP--HLTVQENL-IEAPCRVL-GLSKDQALARAE 123
Query: 1134 EGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQN 1187
+ L L ++ A+ S GQ+Q + + R ++ Q+L+ DE TA++D T I+
Sbjct: 124 KLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS- 182
Query: 1188 TIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244
I +E A T + V H + + V+ M +G +VE + Q F
Sbjct: 183 -IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKN--- 238
Query: 1245 EYWSH 1249
Y SH
Sbjct: 239 -YLSH 242
|
Length = 242 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-09
Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 31/223 (13%)
Query: 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRS 1079
G+T G +GVVG +G GK+T A+ LV+ T G++ G D+ + +RS
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 1080 NLGIIPQDPTLFSGSVRYNL-----DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--K 1132
++ +I QDP L S + R + +PL + + L + ++++ ++
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPK-----------LSRQEVKDRVKAMML 146
Query: 1133 KEGL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN---T 1188
K GL +L+ + +S GQ Q IG+ R ++ ++++ DE +++D + + + N
Sbjct: 147 KVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ 206
Query: 1189 IRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE---YDE 1227
++RE ++I +AH +A V + VL M G VE YDE
Sbjct: 207 LQREMG-LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248
|
Length = 331 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 43/246 (17%)
Query: 1019 LVLRGITCTFEGGHKI-------------GVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
L +R +T +F+G H + ++G +G GK+TL+ L +PT G+I++D
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79
Query: 1066 GLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNL------DPLSQFTDQEIWEVTIPSQ 1118
G+D++ + Y N+ + Q LF +V N+ D L + EI ++
Sbjct: 80 GVDLSHVPPYQRPINM--MFQSYALFPHMTVEQNIAFGLKQDKLPK---AEIASRV--NE 132
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+L ++E + K L S GQRQ + L R + +R ++L+LDE ++D
Sbjct: 133 MLGLVHMQEFAKRKPHQL-----------SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
Query: 1179 NATDSILQ----NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
+Q + + R C ++T A M + + M+ GK V+ EP+++
Sbjct: 182 KKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI-MNRGKFVQIGEPEEIYEH 240
Query: 1235 QDSLFA 1240
+ ++
Sbjct: 241 PTTRYS 246
|
Length = 377 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 8e-09
Identities = 61/247 (24%), Positives = 119/247 (48%), Gaps = 29/247 (11%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----P 1057
K+EI DL++ + VL G+ ++G +GSGK+TL+ RL+E
Sbjct: 3 KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1058 TGGKIIIDGLDITTIGLYDLRSNLGIIPQDP------TLFSG-SVRYNLDPLSQFTDQEI 1110
G++ +DG DI + + +LR + ++ Q P ++F ++ L+ L + + +E+
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKEL 119
Query: 1111 WEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
E LEK QL + E K+ LD+ S GQ+Q + + R + + ++L+
Sbjct: 120 QERV--RWALEKAQLWD---EVKDRLDA----PAGKLSGGQQQRLCIARALAFQPEVLLA 170
Query: 1171 DEATASIDNATDSILQNTIRREFANCTVITVAH---RIATVMDCNMVLSMSDGKLVEYDE 1227
DE TA++D + +++ + T++ V H + A + D V + G++VE+
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISD--YVAFLYKGQIVEWGP 228
Query: 1228 PKKLLRR 1234
+++
Sbjct: 229 TREVFTN 235
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 9e-09
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTV 575
LSGGQKQR+ +ARAL + + L D+ SALD T T ++ L T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT-----TRSILELLKDINRELGLTI 194
Query: 576 LLVTHQVDFLPAF-DSILLISGGEII-QAATYD 606
+L+TH++D + D + +I G ++ Q +
Sbjct: 195 VLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 28/229 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL+ I+ E G + V G TGSGK++L+ + +EP+ GKI G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIP----SQVLEKCQLREVIQEKKEG 1135
+ PQ + G+++ N+ I+ ++ + V++ CQL E I E
Sbjct: 488 RISFSPQTSWIMPGTIKDNI----------IFGLSYDEYRYTSVIKACQLEEDIALFPEK 537
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD-SILQNTIRREFA 1194
+++ + G S GQR I L R V + + +LD +D T+ I ++ + + +
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
N T I V ++ + + +L + +G Y +L ++ + L+
Sbjct: 598 NKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 64/217 (29%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKST---LLAAIL----GEL--------------- 497
N L+N++ E+ E AI G G+GKST +L +L GE+
Sbjct: 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81
Query: 498 ----------PRLQ------------GMDLKMLPFGDLTQIGERGV-------------- 521
P Q G++ K +P + I +
Sbjct: 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQ 141
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK---KTVLLV 578
NLSGGQKQR+ +A L + +I + D+ S LD K + + +M L K KT++ +
Sbjct: 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IMVDLRKTRKKTLISI 199
Query: 579 THQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEF 615
TH +D D +++ S G++I +L ++E
Sbjct: 200 THDMDEAILADKVIVFSEGKLIAQGKPKEIL-NNKEI 235
|
Length = 271 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +ARAL + ++ LLD+P SALD T K E ++ L KK T+++VTH
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI---EELIQELKKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 61/285 (21%), Positives = 100/285 (35%), Gaps = 79/285 (27%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLL-------------AAILG------------ 495
+ +N +V+ E F G GAGK+T + A + G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 496 -------------ELP---------RLQGMDLK--------MLPFGDLTQIGERGV-NLS 524
+L RL G+ +L +L + +R V S
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYS 126
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTH-- 580
GG ++R+ +A +L D+ LD+P + LD +T + ++ +Y+ AL T+LL TH
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW-DYIR-ALKEEGVTILLTTHYM 184
Query: 581 -QVDFLPAFDSILLISGGEIIQAATY---------DHLLVTSQEFQDLVNAHKETMGPET 630
+ D L D I +I G II T D L ++ Q L + +M
Sbjct: 185 EEADKLC--DRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSL--KVEVSMLIAE 240
Query: 631 FGEHVSSKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLK 675
GE V D D+ + + G++
Sbjct: 241 LGETGLGLLA---VTVDSDRIKILVPDGDETVPEIVEAAIRNGIR 282
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 18/189 (9%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080
L+G+ T + G I ++G +G GK+TL++ + L +PT G +I++G IT G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------- 53
Query: 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE--GLDS 1138
P +F Y+L P + V L K + R +++E GL
Sbjct: 54 ----PDRMVVFQN---YSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE 106
Query: 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANC 1196
+ S G +Q + + R + R ++L+LDE ++D T LQ + + E
Sbjct: 107 AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1197 TVITVAHRI 1205
TV+ V H +
Sbjct: 167 TVLMVTHDV 175
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 53/255 (20%), Positives = 100/255 (39%), Gaps = 32/255 (12%)
Query: 987 ELVQKNSPAPDWPPTGKVEIYDL-QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKT 1045
EL + P P + +L + R N +L ++ G +VG G+GKT
Sbjct: 12 ELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKT 71
Query: 1046 TLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNLGIIPQDPTLFSGSVRYNLDP--- 1101
TL+S L P+ G + + G ++LR +G++ S +
Sbjct: 72 TLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV-------SSELHERFRVRET 124
Query: 1102 -----LSQFTDQE-IWEVTIPSQVLEKCQ--LREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153
LS F I++ + ++ L Q L + G L + + S G+++
Sbjct: 125 VRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL------GAKHLADRPFGSLSQGEQR 178
Query: 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN----CTVITVAHRIATVM 1209
+ + R +++ ++L+LDE +D L N + E A ++ V H +
Sbjct: 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL-EELAASPGAPALLFVTHHAEEIP 237
Query: 1210 DC-NMVLSMSDGKLV 1223
C L + +G++V
Sbjct: 238 PCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 33/246 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PT 1058
+ D+ + Y L+GI F ++G +G GK+T + L R+ +
Sbjct: 6 ITSSDVHLFYGKFE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 1059 GGKIIIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYNLD---PLSQFTDQEIWEV 1113
G + + G +I + LR +G++ Q P F S+ N+ L+ D+ + +
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDE 123
Query: 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
+ + + + EV E SL S GQ+Q + + RV+ + +++LDE
Sbjct: 124 AVETSLKQAAIWDEVKDHLHESALSL--------SGGQQQRVCIARVLAVKPDVILLDEP 175
Query: 1174 TASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD-------GKLVEYD 1226
T+++D + + ++N + T+I V H + + +SD G L+E+
Sbjct: 176 TSALDPISSTQIENMLLELRDQYTIILVTHSM------HQASRISDKTAFFLTGNLIEFA 229
Query: 1227 EPKKLL 1232
+ K++
Sbjct: 230 DTKQMF 235
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 47/260 (18%)
Query: 1004 VEIYDLQIRYRPNAPLVLRG---ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
+ ++ RY+ P R + + G + ++G TGSGK+TL+ L L++PT G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1061 KIIIDGLDITTIG-----LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
+ I G + T G L LR +GI+ F QF + +++E T+
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIV------F------------QFPEHQLFEETV 103
Query: 1116 -------P-----SQVLEKCQLREVIQEKKEGLD-SLVVQDGANWSMGQRQLIGLGRVVL 1162
P S+ K + RE+I + GL L+ + S GQ + + + V+
Sbjct: 104 EKDICFGPMNFGVSEEDAKQKAREMI--ELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161
Query: 1163 RRRQILVLDEATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMS 1218
++LVLDE TA +D +++ + +E T + V H + + ++ M
Sbjct: 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMH 220
Query: 1219 DGKLVEYDEPKKLLRRQDSL 1238
G + P+++ D L
Sbjct: 221 KGTVFLQGTPREIFADPDEL 240
|
Length = 290 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-- 572
QIGE LSGGQK+R+ LARA+ Q + LLD+PF+ +D KT + + ++ L
Sbjct: 139 QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS--LLRELRDEG 192
Query: 573 KTVLLVTHQVDFLPAF-DSILLISG 596
KT+L+ TH + + F D +++ G
Sbjct: 193 KTMLVSTHNLGSVTEFCDYTVMVKG 217
|
Length = 272 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LR 1078
V+ ++ T G +G++G G+GKTT + +V G IIID DI+ + L+ R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
+G +PQ+ ++F SV NL + Q D L Q + E E
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDD-----------LSAEQREDRANELMEEFH 126
Query: 1138 SLVVQD--GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR--REF 1193
++D G + S G+R+ + + R + + ++LDE A +D + ++ I R+
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 1194 ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232
+IT H + + C +S G L+ + P ++L
Sbjct: 187 GLGVLIT-DHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 20/245 (8%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEPTG- 1059
KV++ L + + N ++ ++ F ++G +G GK+T++ ++ R+ + P+
Sbjct: 4 KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1060 --GKIIIDGLDITTIGL--YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
GKI++D DI G+ +R +G++ Q P F Y+ + ++ + +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYD-NVIAGYKLNGRVNRSE 120
Query: 1116 PSQVLEKCQLREVI-QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+++E R + E K+ L S + S GQ+Q + + R + + +++++DE
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKS----NAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176
Query: 1175 ASIDNATDSILQNTIRREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKL 1231
+++D + ++ I T+I V H + A V D M G LVE E KK+
Sbjct: 177 SALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM--GDLVECGETKKI 234
Query: 1232 LRRQD 1236
+
Sbjct: 235 FTTPE 239
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 36/248 (14%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR---LVE--P 1057
K I +L + Y N L+ I ++G +G GK+TL+ L R L+E
Sbjct: 3 KFNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1058 TGGKIIIDGLDI-TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIP 1116
GK+ +DG DI I + DLR +G++ Q P F S+ N+ Q I + +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENV--AYGLRAQGIKDKKVL 118
Query: 1117 SQVLEKCQLR--EVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+V+E+ LR + E K+ L S S GQ+Q + + R + ++++DE T
Sbjct: 119 DEVVER-SLRGAALWDEVKDRLKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 1175 ASIDN-ATDSI--LQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD-------GKLVE 1224
+++D AT I L +++ + T++ V H + +SD G+LVE
Sbjct: 174 SALDPIATHKIEELMEELKKNY---TIVIVTHSM------QQARRISDRTAFFLMGELVE 224
Query: 1225 YDEPKKLL 1232
+D+ + +
Sbjct: 225 HDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-08
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSK 572
T +G G +LSGGQKQRI +ARAL ++ I LLD+ S+LD+ + K + V + +
Sbjct: 1350 TNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD 1409
Query: 573 KTVLLVTHQVDFLPAFDSILLISG----GEIIQA-ATYDHLL 609
KT++ + H++ + D I++ + G +QA T++ LL
Sbjct: 1410 KTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451
|
Length = 1466 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKF---LFTEYV--MGALSKKTVLL 577
LSGGQ+QR+ +ARAL + + +LD+P SALD L + +G T L
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL----TYLF 485
Query: 578 VTHQVDFLPAF-DSILLISGGEIIQ 601
++H + + D + ++ G I++
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRIVE 510
|
Length = 539 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 13/89 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALD----AKTAKFLFTEYVMGALSKK--TVL 576
LSGGQK+R+ +A L +I +LD+P S LD ++ K L+ L+K+ T++
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYD------LNKEGITII 191
Query: 577 LVTHQVDFLPAF-DSILLISGGEIIQAAT 604
+ TH VD +P + D + ++S G+II+ T
Sbjct: 192 ISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 38/202 (18%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP---TGGKIIIDGLDITTIGLY 1075
+L ++ E G + ++G +GSGKTTL+ A+ VE T G+I+ +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---D 77
Query: 1076 DLRSNLGIIPQDPTLFSG-SVRYNL---------DPLSQFTDQEIWEVTIPSQVLEKCQL 1125
+ + + QD L G +VR L S ++ E +L L
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLAL 133
Query: 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID----NAT 1181
+ +G+ S G+R+ + + +L ++L+LDE T+ +D
Sbjct: 134 TRIGGNLVKGI-----------SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
Query: 1182 DSILQNTIRREFANCTVITVAH 1203
S L RR N VI H
Sbjct: 183 VSTLSQLARR---NRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 25/164 (15%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
+ I+ T G++G G+GK+TL+ + ++ PT G+II DG T DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLH 70
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
+G + + P L+ + R NL L D I E VL L +KK
Sbjct: 71 -KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDE------VLNIVDL-TNTGKKKA 122
Query: 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+S+G +Q +G+ +L ++L+LDE T +D
Sbjct: 123 K----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 27/250 (10%)
Query: 999 PPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL---- 1054
K+E L Y L I+ FE ++G +G GK+T + L R+
Sbjct: 2 ASPPKMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 1055 -VEPTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGS----VRYNLDPLSQFTD 1107
G+I++DG +I + + +LR +G++ Q P F S V Y L ++ D
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR-VNGVKD 118
Query: 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167
+ + +V + + E K+ L + S GQ+Q + + R + ++
Sbjct: 119 KAY----LAERVERSLRHAALWDEVKDRLH----ESALGLSGGQQQRLCIARALAVEPEV 170
Query: 1168 LVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVE 1224
L++DE +++D ++ I A T+I V H + A V D M GKL+E
Sbjct: 171 LLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM--GKLIE 228
Query: 1225 YDEPKKLLRR 1234
+++ R
Sbjct: 229 VGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
++G+ NLSGGQ+QR+ +ARAL D +I L D+P SALD A E + +K T
Sbjct: 154 RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKVT 212
Query: 575 VLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQ 616
+L+VTH + D + GE+I+ D + + + Q
Sbjct: 213 ILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255
|
Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 54/192 (28%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---MDLKMLPFGDLTQIG-- 517
+ NI+ EV P E F + G GAGK+T ILG L +G + L +IG
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 518 --ERGV----------------------------------------------NLSGGQKQ 529
ERG+ LS G +Q
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQ 137
Query: 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF- 588
+IQ A+ + ++ +LD+PFS LD + L T++ +H+++ +
Sbjct: 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC 197
Query: 589 DSILLISGGEII 600
D +L++ G+ +
Sbjct: 198 DRLLMLKKGQTV 209
|
Length = 300 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 61/254 (24%)
Query: 1019 LVLRGITCTF-------------EGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
+VL+ IT F + G + ++G +G GKTT++ + L +PT G+I ID
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 1066 GLDITTIGLYDLRS----NLGIIPQDPTLF-----SGSVRYNLDPLSQFTDQEIWEVTIP 1116
G D+T RS ++ ++ Q LF +V Y L L +P
Sbjct: 67 GEDVTH------RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG-----------VP 109
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDG------ANWSMGQRQLIGLGRVVLRRRQILVL 1170
+ E Q KE L+ LV G S GQ+Q + L R ++ + ++L+
Sbjct: 110 KE--------ERKQRVKEALE-LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160
Query: 1171 DEATASIDNATDSILQNTIR--REFANCTVITVAHRIA---TVMDCNMVLSMSDGKLVEY 1225
DE +++D ++ IR ++ N T + V H + V D V+ M+ GK+++
Sbjct: 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD--TVIVMNKGKIMQI 218
Query: 1226 DEPKKLLRRQDSLF 1239
P++L R+ S F
Sbjct: 219 GSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 38/236 (16%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
+ L G++ + G ++G +G GKTTL+ + PT G+I++DG DIT + + +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K 71
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136
+ + Q+ LF +V N+ L +++ + I +V E L V L
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGL---RLKKLPKAEIKERVAE--ALDLV------QL 120
Query: 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN- 1195
+ + + S GQ+Q + + R ++ ++L+LDE A D L+ ++ E
Sbjct: 121 EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG----ALDLKLRKDMQLELKRL 176
Query: 1196 -----CTVITVAHRIATVMDCNMVLSMSD-------GKLVEYDEPKKLLRRQDSLF 1239
T + V H D L+MSD GK+ + P+++ + F
Sbjct: 177 QKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 61/201 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG--ELP----RLQGMDLKMLPFGDLTQI 516
L +++ V+P A+ G GAGKSTL + + + G DL+ P L ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL 76
Query: 517 G--------------------------------------------------ERGVNLSGG 526
G ++ L+GG
Sbjct: 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGG 136
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTHQVD 583
++R+++ARAL + LLD+P LD + + T +V AL++ +VL TH VD
Sbjct: 137 HRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-TAHV-RALARDQGLSVLWATHLVD 194
Query: 584 FLPAFDSILLISGGEIIQAAT 604
+ A D ++++ G ++
Sbjct: 195 EIEADDRLVVLHRGRVLADGA 215
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY--VMGALSK--KTVL 576
+LSGGQ+QR+ +ARAL + ++ L D+P SALD + L E VM L++ +T++
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE----LVGEVLKVMQDLAEEGRTMV 206
Query: 577 LVTHQVDF 584
+VTH++ F
Sbjct: 207 VVTHEMGF 214
|
Length = 256 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKK-TVLL 577
+ LSGGQ+QR+ +ARAL ++ L+D+P SALD T K E ++ L KK T+++
Sbjct: 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI---EELITELKKKYTIVI 203
Query: 578 VTH 580
VTH
Sbjct: 204 VTH 206
|
Length = 253 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 27/218 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ T G + V+G +G GKTTL++ + V P+ G I ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----A 74
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEGLD 1137
G++ Q+ L L + + + +EK Q RE+ + GL+
Sbjct: 75 ERGVVFQNEAL-----------LPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE 123
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI----RREF 1193
+ S G RQ +G+ R + Q+L+LDE ++D T +Q + +
Sbjct: 124 GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE-- 181
Query: 1194 ANCTVITVAHRI--ATVMDCNM-VLSMSDGKLVEYDEP 1228
V+ + H I A + + VLS G++VE
Sbjct: 182 TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 55/260 (21%), Positives = 107/260 (41%), Gaps = 26/260 (10%)
Query: 1003 KVEIYDLQIRYRPNAPL---VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
++++ ++ + P L ++ G I ++G+TGSGKTT I L L+ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1060 GKIIIDGLDITTIGLYDLRSNLG--IIPQDPTL----FSGSVRYNLDPLSQFTDQEIWEV 1113
G I D + + ++ Q +R + + QF + +++E
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1114 TIPSQVL--------EKCQLREVIQEKKE--GLDSLVVQDGA-NWSMGQRQLIGLGRVVL 1162
TI ++ K + ++ + E GLD +Q S GQ++ + L ++
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181
Query: 1163 RRRQILVLDEATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMS 1218
LV DE TA +D IL+ + + ++ T+I V H + V++ +
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--GKTIILVTHDLDNVLEWTKRTIFFK 239
Query: 1219 DGKLVEYDEPKKLLRRQDSL 1238
DGK+++ + +L L
Sbjct: 240 DGKIIKDGDTYDILSDNKFL 259
|
Length = 305 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080
L + T E G +G TGSGK+T++ L L PT G + +D IT+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITS--------- 73
Query: 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL---- 1136
+R + + QF + +++E T+ V Q V QE+ E L
Sbjct: 74 -----TSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREK 128
Query: 1137 -------DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
+SL ++ S GQ + + + ++ +ILVLDE TA +D L T+
Sbjct: 129 LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM-TL 187
Query: 1190 RREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
++ + T++ V H + V + + V + GKLV +PK + + D L
Sbjct: 188 FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFL 239
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 86/231 (37%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------------------------ 498
++ I+ +++ E A+ GE G+GKS +ILG LP
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85
Query: 499 ---RLQGMDLKML---PFGDLT-------QIGE-----RGVN------------------ 522
++G + M+ P L Q+ E RG++
Sbjct: 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIP 145
Query: 523 ------------LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTA-------KFLFT 563
LSGGQ+QR+ +A AL + D+ + D+P +ALD K L
Sbjct: 146 EPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
E M +L +TH + + F D + ++ GEI++ T + L Q
Sbjct: 206 ELGMA------ILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
|
Length = 534 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 21/155 (13%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL 1090
G ++ ++G +G+GK+TL++ + + P G + ++G D TT R + ++ Q+ L
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP--PSRRPVSMLFQENNL 82
Query: 1091 FSG-SVRYN----LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
FS +V N L+P + + + +L + + + G++ L+ +
Sbjct: 83 FSHLTVAQNIGLGLNPGLKLNAAQ------------REKLHAIAR--QMGIEDLLARLPG 128
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
S GQRQ + L R ++R + IL+LDE +++D A
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-08
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 52/248 (20%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
+I + + + + E G ++G +GSGK+TL+ L RL+EPT G+I++DG DI
Sbjct: 33 EILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDI 92
Query: 1070 TTIGLYDLRS-----------NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
+ +LR + ++P L +V + L EV Q
Sbjct: 93 AKLSAAELRELRRKKISMVFQSFALLPHRTVL--ENVAFGL------------EV----Q 134
Query: 1119 VLEKCQLREVIQEKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ K + E E E GL+ + S G +Q +GL R + IL++DEA ++
Sbjct: 135 GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSA 194
Query: 1177 IDNATDSILQNTIRREFANC--TVITVAH----------RIATVMDCNMVLSMSDGKLVE 1224
+D + +Q+ + A T++ + H RIA M DG++V+
Sbjct: 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI---------MKDGEIVQ 245
Query: 1225 YDEPKKLL 1232
P+++L
Sbjct: 246 VGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 25/213 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+ I+ G G++G G+GKTT + L+EPT G+I +G ++ ++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1080 NLGIIPQDPTLFSG-----SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
+G +P++ L+ ++Y L L EI LE+ E++ +K +
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKY-LAELKGMPKAEI--QKKLQAWLER---LEIVGKKTK 126
Query: 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA 1194
+ L S G +Q I V+ ++L+LDE + +D +L++ I
Sbjct: 127 KIKEL--------SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 1195 N-CTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225
T+I +HR+ V + C+ +L + G+ V Y
Sbjct: 179 EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 24/242 (9%)
Query: 1013 YRPNAPLVLRG---ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
Y+PN+P R I + G ++G TGSGK+TL+ L L++PT GK+ + + +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 1070 TTIG----LYDLRSNLGIIPQDP--TLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLE 1121
++ + +R +G++ Q P LF +V ++ P + +E E I ++ LE
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE-KIAAEKLE 129
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NA 1180
L + EK S GQ + + + ++ ++LVLDE TA +D A
Sbjct: 130 MVGLADEFWEKSP----------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
Query: 1181 TDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
++Q + TV+ V H + V D + V + G ++ P + + D L
Sbjct: 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239
Query: 1240 AQ 1241
A
Sbjct: 240 AH 241
|
Length = 288 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 64/223 (28%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAIL----------------------------GE 496
++ V+ E F + G GAGK+T L +L G
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 497 LPRLQGMD---------------------------LKMLPFGDLTQIGERGV-NLSGGQK 528
+P+ +D +L F L + V LSGG K
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMK 144
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVLLVTHQVDFLPA 587
+R+ LARAL D D+ +LD+P + LD + A+ L E + L++ KT+LL TH ++
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTHFMEEAER 203
Query: 588 F-DSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPE 629
D + +I G I A H L+ S+ D++ E GP+
Sbjct: 204 LCDRLCVIEEGRKI-AEGAPHALIESEIGCDVI----EIYGPD 241
|
Length = 306 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG---GKIIIDGLDITTIGLYDL 1077
L GI G +G+ G G+GK+TL+ L V P G G+I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1078 -RSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLE------KCQ--LRE 1127
R+ + II Q+ TL SV N+ F EI T+P + + + LRE
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENI-----FLGNEI---TLPGGRMAYNAMYLRAKNLLRE 127
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
+ + + V D + GQ+QL+ + + + ++ ++L+LDE ++S+ IL +
Sbjct: 128 LQLDADN--VTRPVGD---YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD 182
Query: 1188 TIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
IR A + ++H++ V C+ + + DG+ V
Sbjct: 183 IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 65/172 (37%)
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-------- 498
IK L D L + I+L ++ + + GE G+GKSTL A+L +P
Sbjct: 288 IKGGFLRRTVDHLR-AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFD 346
Query: 499 --RLQGMDLKML-------------PFGDLT------QIGERG----------------- 520
+ G+ K + P+G L+ QI E G
Sbjct: 347 GQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRV 406
Query: 521 ------VNL------------SGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
V L SGGQ+QRI +ARAL ++ LLD+P SALD
Sbjct: 407 IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 513 LTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
LT++ +R V LSGGQ+QR+ +ARAL + LLD+PF+ LD T + L ++ A +
Sbjct: 103 LTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162
Query: 572 KKTVLLVTHQ-VDFLPAFDSILLISGGEIIQAATYDHLL 609
+L+ TH + D ++L++ G +I T L
Sbjct: 163 GTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGGQ+QR+ +ARAL ++ L D+P SALD + + A K+T+++VTH++
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
Query: 583 DFL-PAFDSILLISGGEIIQAATYDHLLVTSQE 614
F D + + G I++ L Q+
Sbjct: 205 SFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237
|
Length = 250 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LR 1078
L ++ G + ++G G+GKTTL+ L T G+I+ DG DIT +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
+ I+P+ +FS +V NL F +++ ++ I V E L + E++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-KWVYE---LFPRLHERR---- 131
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
+Q S G++Q++ +GR ++ + ++L+LDE
Sbjct: 132 ---IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-08
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 37/244 (15%)
Query: 991 KNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISA 1050
+ PDW +E+ ++ Y + + I T + G + ++G GSGK+TL
Sbjct: 313 RPQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368
Query: 1051 LFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEI 1110
L L +P G+I++DG +T D R + D LF L P + + +
Sbjct: 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD----QLLGPEGKPANPAL 424
Query: 1111 WEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
E + LE+ ++ ++ + + +L S GQ++ + L + R IL+L
Sbjct: 425 VE-----KWLERLKMAHKLELEDGRISNL------KLSKGQKKRLALLLALAEERDILLL 473
Query: 1171 DEATASIDNATDSILQNTIRREF----------ANCTVITVAHRIATVMDCNMVLSMSDG 1220
DE A D RREF T+ ++H + + +L M +G
Sbjct: 474 DEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNG 525
Query: 1221 KLVE 1224
+L E
Sbjct: 526 QLSE 529
|
Length = 547 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 42/238 (17%)
Query: 1010 QIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069
+ +VL ++ G ++G G+GK+TL+S + RL++ G+I IDGL++
Sbjct: 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65
Query: 1070 TTIGLYDLRSNLGIIPQDPTLFS--------GSVRYNLDPLSQ-FTDQEIWEVTIPSQVL 1120
T+ +L L I+ Q+ + S G R+ P SQ +E I ++ +
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF---PYSQGRLTKEDRR--IINEAI 120
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
E L ++ LD L S GQRQ + V+ + ++LDE ++D
Sbjct: 121 EYLHLEDL---SDRYLDEL--------SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 1181 TDSILQNTIRR---EFANCTVITVAHRIATVMDCNM-------VLSMSDGKLVEYDEP 1228
+ +RR E T++ V H D N ++++ +GK+V+ P
Sbjct: 170 HSVQIMKILRRLADEL-GKTIVVVLH------DINFASCYSDHIVALKNGKVVKQGSP 220
|
Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 31/217 (14%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYD 1076
VL ++ + G + +VG +GSGK+TL+ L L PT G +I +G ++ + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1077 LRSN-LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE- 1134
LR+ LG I Q L L FT E V +P +L + I +
Sbjct: 84 LRNQKLGFIYQFHHL-----------LPDFTALE--NVAMP--LLIGKKKPAEINSRALE 128
Query: 1135 -----GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSI---L 1185
GL+ + S G+RQ + + R ++ ++++ DE T ++D DSI L
Sbjct: 129 MLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
Query: 1186 QNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
R + V+T ++A M + L M DG+L
Sbjct: 189 GELNRLQGTAFLVVTHDLQLAKRM--SRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 25/228 (10%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL------VEPTGGKIIIDGLDITTIG- 1073
L IT + ++G +G GK+TL+ R+ TG I+ +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD-ILYNGENIMDSGA 80
Query: 1074 -LYDLRSNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
+ LR +G++ Q P F S+ N+ P + TI + L+ L + ++
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 1131 EKKEGLDSLVVQDGA-NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
++ + D A + S GQ+Q + + R + +++++DE +++D + +++ I
Sbjct: 141 DR--------LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLI 192
Query: 1190 RREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
TVI V H + A V D M GKL+E+D+ ++
Sbjct: 193 EDLKKEYTVIIVTHNMQQAARVSDYTGF--MYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-08
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLT-------- 514
L+N+++ + + G G+GKSTL+ L + + + +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF 70
Query: 515 ---------QIGERGVNLSGGQKQRIQLARALYQD--RDIYLLDDPFSALDAKTAKFLFT 563
+G++ LSGG+ QR++LA L+ + +++LD+P + L +
Sbjct: 71 LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD-INQLL 129
Query: 564 EYVMGALSKK-TVLLVTHQVDFLPAFDSILLI------SGGEII 600
E + G + TV+L+ H +D L + D I+ SGG+++
Sbjct: 130 EVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVV 173
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 28/251 (11%)
Query: 996 PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV 1055
P + ++L P ++LR ++ + G V+G TGSGK+TL+ +L
Sbjct: 657 AKTPKMKTDDFFEL----EPK--VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF 710
Query: 1056 EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
E + G++ + RS + +PQ + + +VR N+ F D+E +
Sbjct: 711 EISEGRVWAE------------RS-IAYVPQQAWIMNATVRGNI----LFFDEE--DAAR 751
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+ + QL + + GL++ + + G N S GQ+ + L R V R + +LD+ +
Sbjct: 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811
Query: 1176 SID-NATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
++D + + +++ A T + H++ V + V+++ DG++ +R
Sbjct: 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR- 870
Query: 1235 QDSLFAQLVKE 1245
SL+A L E
Sbjct: 871 -TSLYATLAAE 880
|
Length = 1560 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T +GE+G NLS GQKQ + LAR L Q I +LD+ + +D+ T + + + +
Sbjct: 462 LPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI--QQAL 519
Query: 568 GALSKKTVLLV-THQVDFLPAFDSILLISGGEIIQAATYDHLL 609
A+ + T L+V H++ + D+IL++ G+ ++ T+ LL
Sbjct: 520 AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 60/205 (29%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI----------------------LGELPRL 500
L++I+++ + + I G GAGKSTL+ I + +L R
Sbjct: 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRK 78
Query: 501 QGMDLKM-----------LPFGDLTQIGERGV---------------------NLSGGQK 528
GM + + +G + + GE+ V NLSGG+
Sbjct: 79 IGMVFQQPHLFEGTVKDNIEYGPMLK-GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTHQVDFLP 586
QR+ +AR L + ++ LLD+P SALD T+ + E ++ +K TV+ +TH ++
Sbjct: 138 QRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIVKLKNKMNLTVIWITHNMEQAK 196
Query: 587 AF-DSILLISGGEIIQAA-TYDHLL 609
D ++ G +++ A TYD
Sbjct: 197 RIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 65/208 (31%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L G++ + G ++G G+GK+TL+ L L +P G+I++DG +++ D R
Sbjct: 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDAR- 73
Query: 1080 NLGI--IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
GI + Q S R Q+ E+
Sbjct: 74 RAGIAMVYQ----LSVGER---------------------------QMVEIA-------- 94
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN-C 1196
R L R+++ LDE TA++ A L IRR A
Sbjct: 95 --------------RALARNARLLI-------LDEPTAALTPAEVERLFKVIRRLRAQGV 133
Query: 1197 TVITVAHRIATVMD-CNMVLSMSDGKLV 1223
VI ++HR+ V + + V + DG++V
Sbjct: 134 AVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 30/240 (12%)
Query: 1011 IRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT 1070
IR R A L+ I+ + + G + ++G +G GKTTL+ + L T G I G DIT
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69
Query: 1071 TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
L + + GI+ Q LF NL T + + ++ + + ++ E +
Sbjct: 70 R--LPPQKRDYGIVFQSYALFP-----NL------TVADNIAYGLKNRGMGRAEVAERVA 116
Query: 1131 EKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT 1188
E + GL + S GQ+Q + L R + +L+LDE +++D L+
Sbjct: 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176
Query: 1189 IRR--EFANCTVITVAHRIATVMDCNMVLSMSD-------GKLVEYDEPKKLLRRQDSLF 1239
IR+ T I V H D LSM+D G + + P+++ R + F
Sbjct: 177 IRQLQRRLGVTTIMVTH------DQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 30/248 (12%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
V D+ R+ VL G+ + G K+ ++G +GSGK+T++ L L G+I
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1064 IDGLDITTIG-------------LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEI 1110
++G + + L +R+ +G++ Q LF + L T+ +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFP-----HKTVLDNVTEAPV 113
Query: 1111 WEVTIPSQVLEK--CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQIL 1168
+ + EK +L +++ GL A S GQ+Q + + R + R +++
Sbjct: 114 LVLGMARAEAEKRAMELLDMV-----GLADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168
Query: 1169 VLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225
+ DE T+++D + N IRR + + T++ V H + + + V G++VE
Sbjct: 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 1226 DEPKKLLR 1233
+P ++ R
Sbjct: 229 GKPDEIFR 236
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 35/207 (16%)
Query: 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ 1086
+ IG++G G GKTT I L +++P G I I+ ++ Y I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY-------IKAD 73
Query: 1087 DPTLFSGSVRYNL-DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
+ G+VR L F ++ E+ + + ++ ++ ++
Sbjct: 74 ----YEGTVRDLLSSITKDFYTHPYFKT-------------EIAKPLQ--IEQILDREVP 114
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAH 1203
S G+ Q + + + + I +LDE +A +D + IRR E T V H
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKK 1230
D M+ ++D +V EP
Sbjct: 175 ------DIIMIDYLADRLIVFEGEPSV 195
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 517 GERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KT 574
G+ V+LSGGQ+QR+ +ARAL + ++ L D+P SALD + + +M L++ KT
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQQLAEEGKT 204
Query: 575 VLLVTHQVDF 584
+++VTH++ F
Sbjct: 205 MVVVTHEMGF 214
|
Length = 257 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKK-TV 575
E LSGGQ+QR+ +ARA+ + ++ LLD+P SALD T K E ++ L K T+
Sbjct: 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI---EELITELKSKYTI 220
Query: 576 LLVTH 580
++VTH
Sbjct: 221 VIVTH 225
|
Length = 272 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRSNLGIIPQD 1087
G + +VG +GSGK+T AL RLVE GG+II +G I T+ L LR ++ I QD
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
P +LDP Q I E P +V + L+ + + W
Sbjct: 410 PYA-------SLDP-RQTVGDSIME---PLRVHGLLPGKAAAARVAWLLERVGLLPEHAW 458
Query: 1148 ------SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN---TIRREFANCTV 1198
S GQRQ I + R + ++++ DEA +++D + + N ++R+F
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IAY 517
Query: 1199 ITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+ ++H +A V + V M G++VE
Sbjct: 518 LFISHDMAVVERISHRVAVMYLGQIVE 544
|
Length = 623 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 29/68 (42%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKK 573
Q+ G++LSGGQ+QR+ +ARA+ D ++ L+D+P SALD T+K E ++ L+++
Sbjct: 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI---EDLIEELAEE 229
Query: 574 -TVLLVTH 580
TV++VTH
Sbjct: 230 YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG-----KIIIDGLDITTI-G 1073
VL ++ F ++G TGSGKTT + L R+ + G +++ G I
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYN---------LDPLSQFTDQEIWEVTIPSQVLEKCQ 1124
+ + R +G++ Q P F S+ N L P +F + L +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG-------VAQARLTEVG 148
Query: 1125 LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
L + ++++ DS G GQ+QL+ L R + ++L+LDE T+++D T
Sbjct: 149 LWDAVKDRLS--DSPFRLSG-----GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 1185 LQNTIRREFANCTVITVAHRIATVMDCNMVLSM-SDGKLVEYDEPKKLL 1232
++ IR TVI V H +A + ++ DG+LVE ++L
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 18/162 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+ G++ T G + V G GSGKTTL+ L L P G+++++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQE-IWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138
L + + SV NL E + E L + L G +
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEE------ALARVGLN--------GFED 120
Query: 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
V A S GQ++ + L R++L R + +LDE T ++D A
Sbjct: 121 RPV---AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
LSGG K+++ LA AL + LLD+P S LD + + ++ + ++ ++++L TH
Sbjct: 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHS 191
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHL 608
+D A D I ++S G++ + L
Sbjct: 192 MDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 67/200 (33%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK---------- 506
L ++L + + + G GAGK+TL+ + P R+ G D+
Sbjct: 16 LDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 507 -MLP--FG------------------------------------DLTQIGERGVN-LSGG 526
LP FG +L ++ + LSGG
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGG 134
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKF--LFTEYVMGALSK-KTVLLVTHQV 582
++R+ +A+AL D I ++D+P + LD + +F L +E L + + V+L TH V
Sbjct: 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-----LGEDRIVILSTHIV 189
Query: 583 -DFLPAFDSILLISGGEIIQ 601
D + + +++ G+++
Sbjct: 190 EDVESLCNQVAVLNKGKLVF 209
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551
E LSGGQKQR+ +ARAL + + LLD+P +
Sbjct: 86 EPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LPFG LS GQK+R+ LAR L +R I++LD+P +ALDA A LF E +
Sbjct: 123 LPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AAVALFAELIR 171
Query: 568 GALSKK-TVLLVTHQ 581
L++ V+ TH
Sbjct: 172 AHLAQGGIVIAATHI 186
|
Length = 207 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTIGLYD 1076
+L + T G + ++G +G GK+TL+S + + G++ ++ + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE-KKEG 1135
+ +GI+ QD LF + + +P+ + + ++ G
Sbjct: 76 -QRQIGILFQDALLFP-----------HLSVGQNLLFALPATLKGNARRNAANAALERSG 123
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
LD QD A S GQR + L R +L + + L+LDE + +D A
Sbjct: 124 LDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 71/218 (32%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR------LQGMDLK-------- 506
L +++L++ +I G GAGKSTLL+ + L + + G++L
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 507 --------------------MLPFG------------------------DLTQIGERGVN 522
++ FG L + +R ++
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD 134
Query: 523 -LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS------KKTV 575
LSGGQ+QR +A L QD D LLD+P + LD K + + M L KT+
Sbjct: 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI-----MKILRRLADELGKTI 189
Query: 576 LLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLVTS 612
++V H ++F + D I+ + G++++ + D ++
Sbjct: 190 VVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 35/107 (32%), Positives = 65/107 (60%), Gaps = 13/107 (12%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK 573
++ + + LSGGQ+QR+ +AR L D ++ L+D+P SALD T+K E ++ L+++
Sbjct: 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI---EDLIEELAEE 249
Query: 574 -TVLLVTH--QVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQD 617
TV++VTH Q + + + ++GGE+++ YD T + F++
Sbjct: 250 YTVVVVTHNMQQAARISDQTAVFLTGGELVE---YDD---TDKIFEN 290
|
Length = 305 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSK-KTVLLVTH 580
LSGGQ+QR+ +ARAL + +I L+D+P SALD A TA+ E +M L K T+++VTH
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI---EDLMTDLKKVTTIIIVTH 205
Query: 581 QV 582
+
Sbjct: 206 NM 207
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 37/247 (14%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEP---T 1058
+++ DL + Y N L ++ F ++G +GSGK+TL+ ++ R+ + P
Sbjct: 6 LQVSDLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 1059 GGKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGS----VRYNLDPLSQFTDQEIWE 1112
G I+ +G +I DLR +G++ Q P F S V Y L L D+++ +
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR-LKGIKDKQVLD 122
Query: 1113 VTIPSQVLEKCQLREVI-QEKKEGL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
+ +EK I E K+ L DS + G GQ+Q + + RV+ +I++L
Sbjct: 123 -----EAVEKSLKGASIWDEVKDRLHDSALGLSG-----GQQQRVCIARVLATSPKIILL 172
Query: 1171 DEATASIDNATDSILQNTIRREFANCTVITVAH------RIATVMDCNMVLSMSDGKLVE 1224
DE T+++D + ++ T+ + T++ V RI+ + DG L+E
Sbjct: 173 DEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS-----DRTGFFLDGDLIE 227
Query: 1225 YDEPKKL 1231
Y++ K++
Sbjct: 228 YNDTKQM 234
|
Length = 252 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 56/195 (28%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLK-------------- 506
LRN+NLE+KP + A+ G+ GAGK+TLL ILG +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 507 -MLP------FGDLT-------QIGERGVN---------------------LSGGQKQRI 531
++P FG++T + G+ LS GQK+R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERA 516
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTHQVDFLPAF 588
+LA+ L + ++ L+D+ + LD TA + + + L+++ T+++VTH+ + A
Sbjct: 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGITLIVVTHRPEVGNAL 574
Query: 589 --DSILLISGGEIIQ 601
D+++L+ G++
Sbjct: 575 RPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKF---LFTEYVMGALSKK---TVL 576
LSGGQ+QRI +ARAL + + +LD+P SALD L E L K+ T L
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-----LKKERGLTYL 196
Query: 577 LVTHQVDFLPAF-DSILLISGGEI 599
++H + + D I ++ G+I
Sbjct: 197 FISHDLALVEHMCDRIAVMDNGQI 220
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 68/184 (36%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG----------------------ELP 498
LR+++ + E + G GAGKSTLL I G E+P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 499 RLQ---GM---DLKMLP--------------FG--------------DLTQIGERG---- 520
L+ G+ D ++LP G DL + +
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP 135
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK---FLFTEY-VMGALSKKTVL 576
LSGG++QR+ +ARA+ + L D+P LD + LF E +G TVL
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT----TVL 191
Query: 577 LVTH 580
+ TH
Sbjct: 192 MATH 195
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 70/186 (37%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
L +++L ++ E + G GAGK+TLL + G L R+ G D+ L
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 510 -------FGDLTQIGERGV----------------------------------------N 522
F D + +R V
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ 137
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTVLL 577
LSGG++QR+ +ARA+ + L D+P LD + E ++ L + TV++
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS-----ERILDLLKRLNKRGTTVIV 192
Query: 578 VTHQVD 583
TH +
Sbjct: 193 ATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ L RY L ++ T G + ++G G+GK+TL S L RL G+I +
Sbjct: 3 EVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTL-FSGSVRYNLD---PLSQFTDQEIWEVTIPSQVL 1120
G D+ L LG++ Q PTL SVR NL L + E I +++L
Sbjct: 61 AGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEA-RARI-AELL 117
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+ L E +K L + G R+ + + R +L R +L+LDE T +D
Sbjct: 118 ARLGLAERADDKVREL-----------NGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 44/281 (15%)
Query: 989 VQKNSPAPDWPPTGK-----VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043
++ P P +E DL + Y L ++ ++G +G G
Sbjct: 20 TATDTTDPSGDPAASSGETVIEARDLNVFY--GDEQALDDVSMDIPENQVTAMIGPSGCG 77
Query: 1044 KTTLISALFRL--------VEPTGGKIIIDGLDITTIGLYD-------LRSNLGIIPQDP 1088
K+T + + R+ VE G++ G ++ YD LR +G++ Q P
Sbjct: 78 KSTFLRCINRMNDLIDAARVE---GELTFRGKNV-----YDADVDPVALRRRIGMVFQKP 129
Query: 1089 TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148
F S+ N+ + + I +V E + + E K+ LDS G + S
Sbjct: 130 NPFPKSIYDNVAYGLKIQGYD---GDIDERVEESLRRAALWDEVKDQLDS----SGLDLS 182
Query: 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI--- 1205
GQ+Q + + R + +++++DE +++D S +++ I TV+ V H +
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242
Query: 1206 ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
A + D V ++ G+LVE+D+ K+ +S Q V++Y
Sbjct: 243 ARISDKTAVF-LTGGELVEFDDTDKIFENPES---QRVEDY 279
|
Length = 285 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG---GKIIIDGLDITTI---GLYDLRS- 1079
+ G +G+VG +GSGK+ AL L+ G G +G +I + L LR+
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAE 97
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139
+ +I QDP +L+P + +Q + EV + + + K E +E LD++
Sbjct: 98 QISMIFQDPMT-------SLNPYMRVGEQ-LMEVLMLHKGMSK---AEAFEESVRMLDAV 146
Query: 1140 VVQDGAN--------WSMGQRQLIGLGRVVLRRRQILVLDEATASID---NATDSILQNT 1188
+ + +S G RQ + + +L R ++L+ DE T ++D A L N
Sbjct: 147 KMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206
Query: 1189 IRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225
++REF N +I + H + V C+ VL M G+ +EY
Sbjct: 207 LKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
|
Length = 330 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 513 LTQIG------ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLF-TEY 565
LT++G +R LSGGQ+QR+ +ARAL Q + L D+P ++LD ++A+ + T
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 566 VMGALSKKTVLLVTHQVDF 584
+ TV++ HQVD+
Sbjct: 197 DINQNDGITVVVTLHQVDY 215
|
Length = 262 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 46/225 (20%)
Query: 1019 LVLRGITCTFEG-------------GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
L L G++ +F+G G ++G G+GKTT++ + P G ++
Sbjct: 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62
Query: 1066 GLDITTIGLYDLRSNLGIIP--QDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
G D+T + + + + GI Q PT+F +V NL+ L+ D+ ++
Sbjct: 63 GTDLTGLPEHQI-ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASLFF------ 114
Query: 1123 CQLREVIQEKKE------GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+L +++ E GL + S GQ+Q + +G ++++ ++L+LDE A
Sbjct: 115 -RLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173
Query: 1177 IDNATDSILQNT---IRREFANCTVITVAH------RIA---TVM 1209
+ TD + T ++ +V+ V H IA TV+
Sbjct: 174 M---TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVL 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 62/256 (24%), Positives = 112/256 (43%), Gaps = 51/256 (19%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PT 1058
+E +L++ Y N V++G+ ++G +G GK+TL+ RL+E
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1059 GGKIIIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIP 1116
G++ + G +I + + ++R +G++ Q P F +TI
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP-------------------HLTIY 103
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLV------------VQD-----GANWSMGQRQLIGLGR 1159
V +L +++ KKE LD V V+D +N S GQRQ + + R
Sbjct: 104 DNVAIGVKLNGLVKSKKE-LDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162
Query: 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAH---RIATVMDCNMVLS 1216
+ + +IL++DE TA+ID + ++ + T++ V H + A V D L
Sbjct: 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLY 222
Query: 1217 MSDGKLVEYDEPKKLL 1232
+ GKL+E +K+
Sbjct: 223 L--GKLIEVGPTRKVF 236
|
Length = 253 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 37/224 (16%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYD 1076
VL ++ + + G + ++GR+G GK+TL L L P+ G + G + +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1077 LRSNLGIIPQDPTLFSG-----SVRYNLD-PLSQFTD-QEIWEVTIPSQVLEKCQLREVI 1129
R ++ ++ QD S +VR + PL + + S++L L +
Sbjct: 87 FRRDIQMVFQDS--ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-- 142
Query: 1130 QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
LD Q S GQ Q + L R + ++L+LDEA +++ D +LQ +
Sbjct: 143 ----SVLDKRPPQ----LSGGQLQRVCLARALAVEPKLLILDEAVSNL----DLVLQAGV 190
Query: 1190 -------RREFAN-CTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+++F C IT H + V C V+ M +G++VE
Sbjct: 191 IRLLKKLQQQFGTACLFIT--HDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 46/210 (21%), Positives = 100/210 (47%), Gaps = 14/210 (6%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEPT-- 1058
++E+ +L + +L+ + ++G +G GK+T I L R+ + P
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1059 -GGKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
G I +DG+DI + + +LR +G++ Q P F S+ N+ + ++ E I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDD-EDFI 119
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+V E + + E K+ LD + S GQ+Q + + R + +++++DE +
Sbjct: 120 EERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175
Query: 1176 SIDNATDSILQNTIRREFANCTVITVAHRI 1205
++D + + +++ I + + T++ V H +
Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 60/205 (29%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------------------------ 498
+R ++ V+ E F + G GAGK+T + + L
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 499 -----------------------RLQGMD--------LKMLPFGDLTQIGERGV-NLSGG 526
RL G+ ++L F L + +R V SGG
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGG 135
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSKKTVLLVTHQVDF 584
++R+++AR+L ++ LD+P LD +T ++ EY+ + T+LL TH ++
Sbjct: 136 MRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEE 194
Query: 585 LPAF-DSILLISGGEIIQAATYDHL 608
D + +I G II T + L
Sbjct: 195 AEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +ARAL + ++ L+D+P SALD T K E ++ L K T+++VTH
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI---EELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 38/231 (16%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
V +T GH ++G G GK+TL+ L RL+ P G + +DG I ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1080 NLGIIPQDPTLFSGSV---------RYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
+G++ Q+ T G + RY PL FT W V + Q
Sbjct: 82 RIGLLAQNATT-PGDITVQELVARGRYPHQPL--FTR---WRKEDEEAVTKAMQ------ 129
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID--NATDSI-LQN 1187
G+ L Q S GQRQ + V+ + I++LDE T +D + D + L +
Sbjct: 130 --ATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 1188 TIRREFANCTVITVAH------RIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
+ RE T+ V H R A+ ++++ +GK+V PK+++
Sbjct: 188 ELNRE-KGYTLAAVLHDLNQACRYAS-----HLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 53/230 (23%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYD 1076
+L G+ + G I ++G +GSGK+TL++ L L + + G++ + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1077 LRS-NLGIIPQD----PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ- 1130
LR+ ++G + Q PTL LE +L +++
Sbjct: 85 LRAKHVGFVFQSFMLIPTL---------------------------NALENVELPALLRG 117
Query: 1131 ----EKKEGLDSLVVQDG---------ANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+ + G +L+ Q G A S G++Q + L R R +L DE T ++
Sbjct: 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNL 177
Query: 1178 DNAT-DSI--LQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
D T D I L ++ RE T+I V H + C+ L + +G+L E
Sbjct: 178 DRQTGDKIADLLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 1036 VVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQDP 1088
++G +G GK+T I L R+VE T GKI+ +I + + +LR+N+G++ Q P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 1089 TLFSGSVRYNLD---PLSQFTDQEIWEVTIPSQVLEKCQLR--EVIQEKKEGLDSLVVQD 1143
F S+ N+ + D++ + +++EK LR + E K+ L +
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLD-----EIVEK-SLRGAAIWDELKDRLHD----N 164
Query: 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
S GQ+Q + + R + ++++DE T+++D + ++ ++ + ++I V H
Sbjct: 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTH 224
Query: 1204 RI---ATVMDCNMVLSMSDGKLVEYDEPKKL 1231
+ A + D G + EYD+ K+
Sbjct: 225 NMQQAARISDKTAFFLN--GYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 482 VGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVN-LSGGQKQRIQLARALYQD 540
V G+ + G+ P + + L +L+ + +R ++ LSGG++QR+ +ARAL Q+
Sbjct: 96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155
Query: 541 RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGEI 599
+ LLD+P + LD + A + TV+ H ++ ++ D ++++ GG +
Sbjct: 156 PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215
Query: 600 IQAATYDHLLV 610
+ A +L
Sbjct: 216 VAAGPPREVLT 226
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 43/172 (25%), Positives = 60/172 (34%), Gaps = 53/172 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-----------------MDL 505
+++ + E I G GAGK+TLL + G L G L
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 506 KML--------------------PFGD----------LTQIGERGV------NLSGGQKQ 529
L F L Q+G G+ LS GQ++
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQR 137
Query: 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
R+ LAR +++LD+PF+ALD + L A VLL THQ
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LSGG++QR+ LARA+ + + L D+P +LD K + ++ L+ KT+++VTH
Sbjct: 135 LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVL--DLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKKTVLLVT 579
++LSGGQ+QR+ +ARAL + D+ L+D+P SALD T K E ++ K T+++VT
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRK--IEELILKLKEKYTIVIVT 211
Query: 580 H 580
H
Sbjct: 212 H 212
|
Length = 259 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQ+QR+ + R L + ++LLD+P S LDA + E + L K+ T++ VT
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMIYVT 191
Query: 580 H-QVDFLPAFDSILLISGGEIIQ 601
H QV+ + D I+++ G + Q
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQ 214
|
Length = 369 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 62/250 (24%), Positives = 116/250 (46%), Gaps = 37/250 (14%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PT 1058
+E+ DL I Y + I+ E ++G +G GK+T + ++ R+ + +
Sbjct: 22 LEVKDLSIYY--GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79
Query: 1059 GGKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV--T 1114
G+I+ +GL+I + I + +LR +G++ Q P F S+ N+ ++ + V
Sbjct: 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE 139
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
I + L K L + E K+ L S + S GQ+Q + + R + + +L+LDE
Sbjct: 140 IVEESLTKAALWD---EVKDRLHS----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192
Query: 1175 ASID---NATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD-------GKLVE 1224
+++D NA L ++ E+ ++I V H + L +SD G LVE
Sbjct: 193 SALDPISNAKIEELITELKEEY---SIIIVTHNM------QQALRVSDRTAFFLNGDLVE 243
Query: 1225 YDEPKKLLRR 1234
YD+ +++
Sbjct: 244 YDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 33/194 (17%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+E+ DL RY + VL+G++ G I ++G +GSGK+T + + L +P+ G I
Sbjct: 6 ALEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 1063 IIDGLDITTIG-------------LYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQ 1108
++G +I L LR+ LG++ Q L+S +V N+
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV--------- 114
Query: 1109 EIWEVTIPSQVL--EKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164
+ P VL K + E ++ K G+ A+ S GQ+Q + + R +
Sbjct: 115 ----IEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAME 170
Query: 1165 RQILVLDEATASID 1178
++++ DE T+++D
Sbjct: 171 PEVMLFDEPTSALD 184
|
Length = 256 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 8e-07
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 41/250 (16%)
Query: 1019 LVLRGITCTFEG-------------GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
L GI TF G G ++G G+GK+TL+ L +P G I+ID
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 1066 GLDITTIGLYD-LRSNLGIIPQD----PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ-- 1118
G ++ L + + II Q+ P + +V NL L Q P +
Sbjct: 65 GQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENL-YLGQL----------PHKGG 110
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDG--ANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
++ + L +E+ E L + D S+GQRQ++ + + + R +++ DE T+S
Sbjct: 111 IVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
Query: 1177 IDNATDSILQNTIRREFANCTVIT-VAHRIATVMD-CNMVLSMSDGKLVE-YDEPKKLLR 1233
+ L IR A VI V+HR+ + C+ + DG+ V +D+ ++ R
Sbjct: 171 LSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDR 230
Query: 1234 RQDSLFAQLV 1243
D L +V
Sbjct: 231 --DQLVQAMV 238
|
Length = 501 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII----DGLDITTIG-- 1073
VL+ ++ T G + + G +G+GK+TL+ +L+ P G+I++ +D+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1074 --LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE 1131
L R +G + Q F L + + + E+ V P +LE+ RE +
Sbjct: 83 EVLEVRRKTIGYVSQ----F-------LRVIPRVSALEV--VAEP--LLERGVPREAARA 127
Query: 1132 KKEGLDSLVVQDGANWSM-------GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
+ L + + W + G++Q + + R + IL+LDE TAS+D A +
Sbjct: 128 RARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 1185 LQNTIRREFAN-CTVITVAH 1203
+ I A +I + H
Sbjct: 188 VVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKKTVLLVTHQ 581
LSGGQKQR+ +A L DI +LD+ S LD + + L T + TVL +TH
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200
Query: 582 VDFLPAFDSILLISGGEIIQAAT 604
+D D +++++ GEI++ T
Sbjct: 201 LDEAAQADRVIVMNKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 37/236 (15%)
Query: 1036 VVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTIG--LYDLRSNLGIIPQDP 1088
++G +G GK+T + L R+ + G + +DG DI G L +LR +G++ Q P
Sbjct: 76 LIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135
Query: 1089 TLFSGSVRYNLD--P----------LSQFT--DQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
F S+R N+ P L++ D + E + + L + L + + ++
Sbjct: 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR-- 193
Query: 1135 GLDSLVVQDGA-NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF 1193
LD D A S GQ+Q + + R + +++++DE +++D S +++ I
Sbjct: 194 -LD-----DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA 247
Query: 1194 ANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246
TV+ V H + A + D V ++ G+LVEYD+ K+ +S Q V++Y
Sbjct: 248 EEYTVVVVTHNMQQAARISDQTAVF-LTGGELVEYDDTDKIFENPES---QRVEDY 299
|
Length = 305 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 9e-07
Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 1035 GVVGRTGSGKTTLISALFRLVEPTG-----GKIIIDGLDI--TTIGLYDLRSNLGIIPQD 1087
++G +G GK+T I L R+ + GK+ I+G DI + + +LR N+G++ Q
Sbjct: 42 ALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQK 101
Query: 1088 PTLFSGSVRYNL--DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
P F S+ N+ P +++ + + + + E K SL
Sbjct: 102 PNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSL------ 155
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205
S GQ+Q + + R + + +I++ DE T+++D + + +++ I + T++ V H +
Sbjct: 156 --SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213
Query: 1206 ---ATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
A + D M G+L+E+ + +++
Sbjct: 214 QQAARISDYTGFFLM--GELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 27/214 (12%)
Query: 1036 VVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTIGLYD----LRSNLGIIPQ 1086
++G +G GK+T + A+ R+ + T G ++ DG DI G + LR +G++ Q
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI--YGKFTDEVLLRKKIGMVFQ 127
Query: 1087 DPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143
P F S+ N+ L D++ E I + L K L + E + LD ++
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLE-EIVEKSLRKAALWD---EVSDRLD----KN 179
Query: 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
S GQ+Q + + R + +IL+LDE T+++D + +++ I+ + T++ V H
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239
Query: 1204 RI---ATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
+ + V D M +G LVE+ +L
Sbjct: 240 NMQQASRVSDYTMFF--YEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK- 573
++ E G +LSGGQ+QR+ +AR + + ++ L+D+P SALD + L E M L K
Sbjct: 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIST--LKIEETMHELKKNF 204
Query: 574 TVLLVTH 580
T+++VTH
Sbjct: 205 TIVIVTH 211
|
Length = 269 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 57/243 (23%), Positives = 95/243 (39%), Gaps = 71/243 (29%)
Query: 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKST-------LLAA- 492
+ + I +K+ ++ D TL +++ VK E +I G G+GKST LL A
Sbjct: 1 MSNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 493 -----ILGEL-------------------PRLQ------------GMDLKMLPFGDLTQI 516
I G+L P Q G++ K +P ++ +
Sbjct: 61 SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 517 GERGVN--------------LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK------ 556
+ LSGGQKQR+ +A A+ I +LD+ S LD +
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 557 -TAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEF 615
T K + +Y M TV+ +TH +D + D +L++ G++ +T L +
Sbjct: 181 KTIKGIRDDYQM------TVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234
Query: 616 QDL 618
L
Sbjct: 235 LQL 237
|
Length = 279 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-06
Identities = 98/448 (21%), Positives = 172/448 (38%), Gaps = 82/448 (18%)
Query: 227 IVNYVTVDAYRIGEFPFWFHQIW--STSLQLCIAVVVVYYSVGLATIATLIVMILTV--- 281
++ +T D +I F F F I CIA + Y SV + I T+ +I+
Sbjct: 112 LIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLA-YLSVPMFAI-TISAIIIGTAAQ 169
Query: 282 -LGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKV---LKLYAWDSYFKNVIEKLRS 337
L K H ++ A N+ AI +K+ +L + +
Sbjct: 170 LLAFMGGFKFFHAARDEE-DAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIAD 228
Query: 338 EEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEP 397
+ + + + +LF+ +LIG A F I + + + F+ L ++ P
Sbjct: 229 LHIIEILIFIAAENFGQLLFF---LLIGCALFAAAMFASI--DAAAISAFVLALLYIKGP 283
Query: 398 IRLLPDVFGAFIEAKVSLDRIANFLEA-----PELQNSDMQQVCSRAELEH--SIFIKSA 450
+ +L +A+++ R+A+F E PEL+ SD V A + SI +K
Sbjct: 284 LEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV 343
Query: 451 DLSWEADLLNP--TLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GEL---- 497
++ +A + L I+L + + I GE G GKSTL GE+
Sbjct: 344 HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403
Query: 498 -------------------------PRLQGMD-------------LKMLPFGDLTQIGER 519
L G D L+ L D +I +
Sbjct: 404 AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDG 463
Query: 520 G----VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--K 573
G LS GQ++R+ L A +DR I L D+ + D +F + E ++ L + K
Sbjct: 464 GFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEE-LLPDLKRQGK 522
Query: 574 TVLLVTHQVDFLPAFDSILLISGGEIIQ 601
T+++++H + D I+ ++ G I++
Sbjct: 523 TIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTVLL 577
LSGGQ+QR+ +ARAL + L D+P ALD+ + E VM L + TV++
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG-----EEVMAILHQLRDRGHTVII 199
Query: 578 VTHQVDFLPAFDSILLISGGEII 600
VTH + ++ I GEI+
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 412 KVSLDRIANFLEAP---ELQNSDMQQVCSRAELEHSI--FIKSADLSWEADLLNPTLRNI 466
K SL R+ N LE P L + S+ + +I ++ + ++ L P L
Sbjct: 41 KSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQ 100
Query: 467 -NLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGER-GVNLS 524
NL P C +G K LA L RL+ L +R ++LS
Sbjct: 101 ENLIEAP------CRVLGLSKDQALARAEKLLKRLR-----------LKPYADRYPLHLS 143
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKK--TVLLVTHQ 581
GGQ+QR+ +ARAL + + L D+P +ALD + TA+ + ++ L++ T ++VTH+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV---SIIKELAETGITQVIVTHE 200
Query: 582 VDFLPAFDS-ILLISGGEIIQAATYDHLL-VTSQEFQD 617
V+ S ++ + G I++ ++ F++
Sbjct: 201 VEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 31/255 (12%)
Query: 993 SPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALF 1052
+ K+++ +L Y L+ I +G +G GK+TL+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 1053 RLVE--P---TGGKIIIDGLDITTIGLYD---LRSNLGIIPQDPTLFSGSVRYNL----- 1099
R+ E P G+I++DG +I T D LR+ +G++ Q PT F S+ N+
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPK-QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 1100 --DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157
+ LS+ E E L K L +++K + Q G + S GQ+Q + +
Sbjct: 120 LFEKLSRAEMDERVE-----WALTKAALWNEVKDK-------LHQSGYSLSGGQQQRLCI 167
Query: 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDC-NMVLS 1216
R + R ++L+LDE +++D + ++ I + TV+ V H + C +
Sbjct: 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAF 227
Query: 1217 MSDGKLVEYDEPKKL 1231
M G+L+E+ +
Sbjct: 228 MYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG---GKIIIDGLDITTIGLYDL 1077
L ++ G + + G G+GK+TL+ L V P G G+II +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 1078 -RSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWE--VTIPSQVLEKCQ--LREVIQE 1131
R+ + II Q+ L SV N+ F EI + + + Q L ++
Sbjct: 80 ERAGIAIIHQELALVKELSVLENI-----FLGNEITPGGIMDYDAMYLRAQKLLAQL--- 131
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
LD N +GQ+QL+ + + + ++ ++L+LDE TAS+ + ++L + IR
Sbjct: 132 ---KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
Query: 1192 EFA-NCTVITVAHRIATVMD-CNMVLSMSDGK 1221
A I ++H++ V + + + DG+
Sbjct: 189 LKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT---TIGLYDL 1077
L G++ T E G + VVG +G GK+TL L + PTGG++ G D+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1078 RSNLGIIPQDPTLFSGS------VRYNL-DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
R + I+ Q+P GS V L +PL T L + RE
Sbjct: 91 RQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTS------------LSAAERREKAL 135
Query: 1131 E--KKEGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
K GL + + +S GQRQ I + R ++ ++V DE +++D
Sbjct: 136 AMMAKVGLRP----EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 49/226 (21%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL 1090
G +G +G G+GK+T + L L+ PT GK+ ++G D P
Sbjct: 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD----------------PFRRR- 92
Query: 1091 FSGSVRYNLDPLSQFTDQE---IWEVTIPSQVLEKCQLREVI-----QEKKEGLDSLV-- 1140
L + Q+ W++ L+ ++ ++I E E LD L
Sbjct: 93 -----EEYLRSIGLVMGQKLQLWWDLPA----LDSLEVLKLIYEIPDDEFAERLDFLTEI 143
Query: 1141 --VQDGANW-----SMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNTIRRE 1192
++ W S+GQR L +L ++L LDE T +D NA +I ++
Sbjct: 144 LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR-EFLKEY 202
Query: 1193 FA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235
TV+ H + C+ VL + G+LV +D L+ Q
Sbjct: 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTH 580
LSGGQ+QR+ +ARAL + L D+P SALD + + VM L+++ T+++VTH
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK--VMQDLAEEGMTMVIVTH 194
Query: 581 QVDFLPAFDSILL-ISGGEIIQAATYDHLLVT--SQEFQD 617
++ F S L+ I G I + L+ SQ Q+
Sbjct: 195 EIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE 234
|
Length = 240 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 31/250 (12%)
Query: 1001 TGKVEIYDLQIRYRPNAPL-VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
T K + D I N L I+ G IG+VG GSGK+TL + + + PT
Sbjct: 19 TNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV 78
Query: 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQ 1118
GK+ +G +++ I + + G+ Q +G L F +EI +T +
Sbjct: 79 GKVDRNG-EVSVIAI-----SAGLSGQ----LTGIENIEFKMLCMGFKRKEIKAMT--PK 126
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
++E +L E I Q +S G R +G + ILV+DEA + D
Sbjct: 127 IIEFSELGEFIY-----------QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175
Query: 1179 NA-TDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
L + N T+ V+H + V C + + GKL +Y E +L +
Sbjct: 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK-- 233
Query: 1237 SLFAQLVKEY 1246
+ + ++
Sbjct: 234 --YEAFLNDF 241
|
Length = 264 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 500 LQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK 559
L M L + + + G LSGGQK+R+ +A L +I + D+P + LD K
Sbjct: 160 LNKMGLDD-SYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 560 FLFTEYVMGALSKKTVLLVTHQVD-FLPAFDSILLISGGEIIQAAT 604
+ + + KTV ++TH ++ L D ++++ G+I++ T
Sbjct: 214 EMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
++ E+G LSGGQ+QR+ +ARA+ D+ L+D+P SALD + + + E + + T
Sbjct: 154 KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYT 212
Query: 575 VLLVTHQV 582
+++VTH +
Sbjct: 213 IIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 19/96 (19%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGE---R 519
+R+++ EV+P E I GE G+GKSTL A++G +LP G GE
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMG-----------LLPEGGRITSGEVILD 73
Query: 520 GVNLSGGQKQRIQLARALYQDRDI-YLLDDPFSALD 554
G +L G ++ ++ R + I + DP ++L+
Sbjct: 74 GRDLLGLSEREMRKLRG----KRIAMIFQDPMTSLN 105
|
Length = 539 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISAL--FRLVEPTGGKIIIDGLDITTIGLYDL 1077
+L+G+ T + G ++G GSGK+TL + E T G+I+ G DIT + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE- 73
Query: 1078 RSNLGII--PQDPTLFSG 1093
R+ LGI Q P G
Sbjct: 74 RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +ARA+ DI L+D+P SALD T + E M L K T+++VTH
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL---EETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +ARA+ + L+D+P SALD + E ++ L K T+++VTH
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI--ENLIQELKKNFTIIVVTH 206
Query: 581 QVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
+ D + G I++ T + Q
Sbjct: 207 SMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK- 573
++ + G LSGGQ+QR+ +ARAL + ++ LLD+P SALD + + E ++ LS+
Sbjct: 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI--EKLLEELSENY 196
Query: 574 TVLLVTHQV-DFLPAFDSILLISGGEIIQ 601
T+++VTH + + D I + GE+I+
Sbjct: 197 TIVIVTHNIGQAIRIADYIAFMYRGELIE 225
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 24/230 (10%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
VL I+ G + ++G +GSGKTTL+ + L T G I G D++ + D +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK- 75
Query: 1080 NLGIIPQDPTLF-----SGSVRYNLD--PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK 1132
+G + Q LF ++ + L P + + I ++V QL E++Q
Sbjct: 76 -VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAA----IKAKVT---QLLEMVQ-- 125
Query: 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR- 1191
L L + A S GQ+Q + L R + QIL+LDE ++D L+ +R+
Sbjct: 126 ---LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
Query: 1192 -EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
E T + V H M+ + V+ MS G + + P ++ R + F
Sbjct: 183 HEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT---VLLVT 579
LSGG+KQR+ + RAL ++ L+D+P ++LD + + Y+ L + +L V+
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-YLE-RLRDEINIPILYVS 186
Query: 580 HQVD 583
H +D
Sbjct: 187 HSLD 190
|
Length = 352 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 65/198 (32%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELPR-----LQGMDL------------- 505
+++L + E FA+ G G GKSTLL + G E P L G+DL
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96
Query: 506 -----------------------------------KMLPFGDLTQIGERGVN-LSGGQKQ 529
+ML + + +R + LSGGQ+Q
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ 156
Query: 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-----MGALSKKTVLLVTH-QVD 583
R+ LAR+L + + LLD+P ALD K + E V +G T ++VTH Q +
Sbjct: 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV----TCVMVTHDQEE 212
Query: 584 FLPAFDSILLISGGEIIQ 601
+ I +++ G+ +Q
Sbjct: 213 AMTMAGRIAIMNRGKFVQ 230
|
Length = 377 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK 573
++ E + LSGGQ+QR+ +ARAL + ++ L+D+P SALD T K E ++ L +
Sbjct: 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI---EELIHELKAR 198
Query: 574 -TVLLVTH 580
T+++VTH
Sbjct: 199 YTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
K+ + DL RY + VL+G++ G I ++G +GSGK+T + + L +P+ G I
Sbjct: 5 KLNVIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62
Query: 1063 IIDGLDITTIGLYD-------------LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
+++G I + D LR+ L ++ Q +NL S T E
Sbjct: 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ---------HFNL--WSHMTVLE 111
Query: 1110 -IWEVTIPSQVLEKCQLRE--VIQEKKEGLDSLVVQD-GANWSMGQRQLIGLGRVVLRRR 1165
+ E I L K + RE V K G+D + S GQ+Q + + R +
Sbjct: 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171
Query: 1166 QILVLDEATASID 1178
++L+ DE T+++D
Sbjct: 172 EVLLFDEPTSALD 184
|
Length = 257 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLL 577
+ + LSGGQ+QR+ +AR L I LLD+P SALD +A + E ++G T+LL
Sbjct: 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-EETLLGLKDDYTMLL 202
Query: 578 VTH 580
VT
Sbjct: 203 VTR 205
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 65/264 (24%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR---LVE-- 1056
GK+ + DL + Y L+ I E ++G +G GK+T + L R L+
Sbjct: 2 GKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 1057 PTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVT 1114
G++++DG DI + I + LR +G++ Q P F S+ N V
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDN--------------VA 105
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLV---VQDGANW--------------SMGQRQLIGL 1157
+ I++KK+ LD +V ++ A W S GQ+Q + +
Sbjct: 106 YGPRT-------HGIKDKKK-LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157
Query: 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNM--VL 1215
R + ++L++DE T+++D + ++ I+ + T++ V H NM
Sbjct: 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH--------NMQQAS 209
Query: 1216 SMSD-------GKLVEYDEPKKLL 1232
+SD G++VE+ + L
Sbjct: 210 RISDKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 56/252 (22%), Positives = 119/252 (47%), Gaps = 38/252 (15%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR---LVEPTG- 1059
+ + ++ I Y ++ + C G ++G +G GK+T++ +L R L+E
Sbjct: 14 ISLQNVTISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1060 -GKIIIDGLDI--TTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEV 1113
G+++ DG D+ + ++R +G++ Q P F S+ N+ ++ +T
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDM---- 127
Query: 1114 TIPSQVLEKCQLRE--VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLD 1171
+++E+ LR+ V E K+ L+ + G + S GQ+Q + + R + +++++D
Sbjct: 128 ---DELVER-SLRKAAVWDECKDKLN----ESGYSLSGGQQQRLCIARTIAIEPEVILMD 179
Query: 1172 EATASIDNATDSILQNTIRREFANCTVITVAHRIATVM---------DCNMVLSMSDGK- 1221
E +++D + ++ T+ N T++ V H + + + V S GK
Sbjct: 180 EPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239
Query: 1222 --LVEYDEPKKL 1231
LVE++E KK+
Sbjct: 240 GYLVEFNETKKI 251
|
Length = 269 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 31/232 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG-----KIIIDGLDITT--I 1072
VL+ I F ++G +G GK+TL+ AL R+ + G +++D +I + +
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 1073 GLYDLRSNLGIIPQDPTLFSGSVRYN-------LDPLSQFTDQEIWEVTIPSQVLEKCQL 1125
+ +LR +G++ Q P F S+ N L +Q E+ E ++ L
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL----- 133
Query: 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL 1185
E K+ L + G S GQ+Q + + RV+ +++++DE +++D + +
Sbjct: 134 ---WDEVKDNLH----KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI 186
Query: 1186 QNTIRREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234
+ ++ N T+ V H + A D L D LVEY ++ R
Sbjct: 187 EELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGD--LVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT--------T 1071
VL+GI T G ++G G+GK+TL+ + +V P G + I G
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1072 IGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
+G+Y ++PQ+P LF SV+ N+ +P + ++++++
Sbjct: 86 LGIY-------LVPQEPLLFPNLSVKENI------------LFGLPKRQASMQKMKQLLA 126
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
LD L G+ + RQ++ + R ++R +IL+LDE TAS+ A L + IR
Sbjct: 127 ALGCQLD-LDSSAGS-LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184
Query: 1191 REFANCTVIT-----------VAHRIATVMDCNMVLSMSDGKLVEYD 1226
A I +A RI+ + D + LS GK +
Sbjct: 185 ELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS---GKTADLS 228
|
Length = 510 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 472 PAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERG----------- 520
I G G+GKST+L AI L G + G
Sbjct: 20 EGSLTIITGPNGSGKSTILDAIGLAL----GGAQSATRRRSGVKAGCIVAAVSAELIFTR 75
Query: 521 VNLSGGQKQRIQLARAL----YQDRDIYLLDDPFSALDAKTAKFLFTEYVMG-ALSKKTV 575
+ LSGG+K+ LA L + R +Y+LD+ LD + + L E ++ + V
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQV 134
Query: 576 LLVTHQVDFLPAFDSIL 592
+++TH + D ++
Sbjct: 135 IVITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK- 573
+ E G LSGGQ+QR+ +ARA+ ++ L+D+P SALD TAK E ++ L +
Sbjct: 157 LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAK---VEELIDELRQNY 213
Query: 574 TVLLVTH 580
T+++VTH
Sbjct: 214 TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 45/224 (20%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEP----TGGKIIIDGLDITTIGLYDLRSN-LGIIP 1085
G + +VG +GSGK+ A+ L+ P T G+I++DG + + +R + I
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIM 68
Query: 1086 QDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK-----EGLDSLV 1140
Q+P R +PL T+ + +E + + ++ E L+++
Sbjct: 69 QNP-------RTAFNPL----------FTMGNHAIETLRSLGKLSKQARALILEALEAVG 111
Query: 1141 VQDGA----------NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR 1190
+ D + M QR +I L +L L+ DE T +D + + +R
Sbjct: 112 LPDPEEVLKKYPFQLSGGMLQRVMIALA--LLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 1191 --REFANCTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKL 1231
R+ ++ + H + V + V M DG++VE K++
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-06
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E+ +L Y L+L+ I+ T G +IG+VGR G+GK+TL+ + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1064 IDGLDITTIGLYD 1076
IG ++
Sbjct: 59 WG--STVKIGYFE 69
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQ------DRDIYLLDDPFSALDAK-------T 557
DL+ + R LSGG++QR+QLAR L Q LD+P SALD
Sbjct: 124 DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 558 AKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGEII 600
A+ L E G VL V H ++ + D I+L+ G +I
Sbjct: 184 ARQLARE---GGA----VLAVLHDLNLAAQYADRIVLLHQGRVI 220
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-06
Identities = 49/212 (23%), Positives = 77/212 (36%), Gaps = 79/212 (37%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
L +++ V+P E + G GAGK+TL I G L G D+ LP
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 510 -----------FGDLT---------QIGERG------------------------VNLS- 524
F +LT Q V L+
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 525 ----------GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL---- 570
GQ++R+++ARAL D + LLD+P + L+ + TE + +
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE-----TEELAELIRELR 190
Query: 571 -SKKTVLLVTHQVDFLPAF-DSILLISGGEII 600
TVLLV H +D + + D + ++ G +I
Sbjct: 191 ERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVT 579
+LS Q+Q +++ARAL D + +LD+P +AL K + LF ++ L + ++ ++
Sbjct: 145 DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIRRLKAQGVAIIYIS 202
Query: 580 H 580
H
Sbjct: 203 H 203
|
Length = 500 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQKQR+ +A + +I +LD+ S LD + + V+ + +K TVL +T
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR--VIHEIKEKYQLTVLSIT 198
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
H +D + D IL++ GEII+ A L TS++ ++
Sbjct: 199 HDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEI 237
|
Length = 277 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 511 GDLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA 569
+ Q +R V +LSGG++QR+ LARAL Q + LLD+P ++LD + T ++
Sbjct: 127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ--VRTLELVRR 184
Query: 570 LSK--KTVLLVTHQVDFLPAF-DSILLISGGEIIQA 602
L KT + H +D + D ++L++ G + A
Sbjct: 185 LVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220
|
Length = 402 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 65/253 (25%)
Query: 1018 PLV-LRGITCTFEG-------------GHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
PLV LRGI+ +F+G G + ++G +G GKTT++ + P G+I+
Sbjct: 13 PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP-LSQFTD-------QEIWEVTI 1115
+DG DIT + + N T+F Y L P ++ F + Q+ I
Sbjct: 73 LDGQDITHVPAENRHVN--------TVFQS---YALFPHMTVFENVAFGLRMQKTPAAEI 121
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+V+E LR V L+ + S GQ+Q + + R V+ + ++L+LDE+ +
Sbjct: 122 TPRVMEA--LRMV------QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173
Query: 1176 SIDNATDSILQNTIR---REFANCTVITVAHRIATVMDCNMVLSMSD-------GKLVE- 1224
++D +QN ++ R+ T + V H D L+MSD G++ +
Sbjct: 174 ALDYKLRKQMQNELKALQRKL-GITFVFVTH------DQEEALTMSDRIVVMRDGRIEQD 226
Query: 1225 ------YDEPKKL 1231
Y+EPK L
Sbjct: 227 GTPREIYEEPKNL 239
|
Length = 375 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
DL +R V+ +SGGQ+QR+ LARAL + L D+P S LDA + + + + L
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IREL 182
Query: 571 SKK---TVLLVTHQVDFLPAF---DSILLISGGEIIQAATYDHL 608
++ T L VTH D AF D++++++ G+I+Q + L
Sbjct: 183 QQQFNITSLYVTH--DQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTEYVMGALSKKTVLL 577
LSGGQK+R+ LA L + D + D+P + LD + + G KT++L
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG----KTIIL 220
Query: 578 VTHQVD-FLPAFDSILLISGGEIIQ-AATYDHL 608
VTH +D L + G+II+ TYD L
Sbjct: 221 VTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 5/65 (7%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK-TV 575
+ ++LSGGQ+QR+ +AR L + ++ L+D+P SALD TAK E ++ L K+ TV
Sbjct: 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI---EDLIEDLKKEYTV 201
Query: 576 LLVTH 580
++VTH
Sbjct: 202 IIVTH 206
|
Length = 253 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 29/243 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT--TIGLYDL 1077
VL I + G + ++G +GSGK+TL+ + +L E T G +I+DGL + + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI-PSQV--LEKCQLREVIQE--K 1132
R G++ Q ++ L P T E V P +V K + + +E
Sbjct: 76 RQEAGMVFQ---------QFYLFP--HLTALE--NVMFGPLRVRGASKEEAEKQARELLA 122
Query: 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQNTIRR 1191
K GL + S GQ+Q + + R + + ++++ DE T+++D +L + +
Sbjct: 123 KVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL--KVMQ 180
Query: 1192 EFAN--CTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWS 1248
+ A T++ V H I + ++ + G++ E +P+ L++ S Q ++E+
Sbjct: 181 DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS---QRLQEFLQ 237
Query: 1249 HAE 1251
H
Sbjct: 238 HVS 240
|
Length = 240 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 3e-06
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 12/210 (5%)
Query: 996 PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV 1055
P P V + +L + P+ + + TF +G G+GKTT +S L L+
Sbjct: 923 PGLVP--GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL 980
Query: 1056 EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115
PT G +++ G DI T L +R +LG+ PQ LF ++L + ++ +
Sbjct: 981 PPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILF-----HHL----TVAEHILFYAQL 1030
Query: 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
+ E+ QL + GL ++ + S G ++ + + + +++VLDE T+
Sbjct: 1031 KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090
Query: 1176 SIDNATDSILQNTIRREFANCTVITVAHRI 1205
+D + + + + + + T+I H +
Sbjct: 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHM 1120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLV 578
G++LSGGQ+QR+ +ARA+ + ++ LLD+P SALD + + E +M L K T+ LV
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDYTIALV 204
Query: 579 TH------QVDFLPAFDSILLISGG 597
TH +V AF S+ + G
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGT 229
|
Length = 261 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 40/225 (17%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074
P L I T E G + V+G +G GKTTL++ + V G I +DG + G
Sbjct: 12 GGKP-ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG- 69
Query: 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV--LEKCQLREVIQE- 1131
+ G++ Q+ L P D V Q+ +EK Q E+ +
Sbjct: 70 ----AERGVVFQNEGLL---------PWRNVQDN----VAFGLQLAGVEKMQRLEIAHQM 112
Query: 1132 -KKEGLDSLVVQDGAN----W--SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSI 1184
KK GL +GA W S GQRQ +G+ R + Q+L+LDE ++D T
Sbjct: 113 LKKVGL------EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166
Query: 1185 LQNTIRREFANC--TVITVAHRI--ATVMDCNMVL-SMSDGKLVE 1224
+Q + + + V+ + H I A M +VL S G++VE
Sbjct: 167 MQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +AR + + D+ L+D+P SALD T K E +M L K T+++VTH
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI---EELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 25/102 (24%)
Query: 498 PRLQGMDLKMLPFGDLTQIGER------------------GVNLSGGQKQRIQLARALYQ 539
PRL G++ K L +I E+ + LSGGQ+QR+ +AR L
Sbjct: 144 PRLHGINDKK----QLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV 199
Query: 540 DRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKKTVLLVTH 580
+ +I LLD+P SALD K TAK + + T+++VTH
Sbjct: 200 EPEILLLDEPTSALDPKATAK--IEDLIQELRGSYTIMIVTH 239
|
Length = 286 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 59/174 (33%)
Query: 464 RNINLEVKPAEKFAICGEVGAGKSTLLAAIL--------GELPRLQGMDLK--------- 506
++ + E I G GAGK++LL IL GE+ QG ++
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLR-ILAGLARPDAGEV-LWQGEPIRRQRDEYHQD 75
Query: 507 MLPFG-------DLT-------------------------QIGERGV------NLSGGQK 528
+L G +LT Q+G G LS GQ+
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQ 135
Query: 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQ 581
+R+ LAR +++LD+PF+A+D + + + V+L THQ
Sbjct: 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVA-RLEALLAQHAEQGGMVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLV 578
G LSGGQ+QR+ +ARA+ + D+ L+D+P SALD + L E ++ L + T+++V
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST--LAIEDLINELKQDYTIVIV 203
Query: 579 TH 580
TH
Sbjct: 204 TH 205
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL---VEPTG-- 1059
EI + Y VL + + +G +G GK+T + L +L +E T
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 1060 GKIIIDGLDITT--IGLYDLRSNLGIIPQDPTLFSGSVRYNL--DPLSQ-FTDQEIWEVT 1114
G+I G + + I +LR+ +G++ Q PT F S+ N+ P + D++I E
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE-K 200
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
I + L+ L + E K+ LD + G S GQ+Q + + R + ++L++DE T
Sbjct: 201 IVEKSLKSAALWD---EVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253
Query: 1175 ASIDNATDSILQNTIRREFANCTVITVAHRIA 1206
+++D + ++ I ++I V H +A
Sbjct: 254 SALDPIATAKIEELILELKKKYSIIIVTHSMA 285
|
Length = 329 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 1022 RGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL---- 1077
R ++ G +G+VG +GSGK+TL+ L + P G + LY L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 1078 -----RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQ--EIWEVTIPSQVLEKCQLREVIQ 1130
R+ G + Q+P D L I E + +R Q
Sbjct: 80 RRRLMRTEWGFVHQNP----------RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQ 129
Query: 1131 E--KKEGLDSLVVQD-GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
+ ++ +D + D +S G +Q + + R ++ R +++ +DE T +D + + L +
Sbjct: 130 DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 1188 TIR---REFANCTVITVAHRIATV-MDCNMVLSMSDGKLVE 1224
+R R+ VI V H + + +L M G++VE
Sbjct: 190 LLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG--LDITTI----G 1073
L IT G + ++G +G+GK++L+ L L P G + I G D +
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+ +LR N+G++ Q +YNL P I P +VL + + + +
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWPHLTVQQNLI---EAPCRVLGLSK-DQALARAE 123
Query: 1134 EGLDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQN 1187
+ L+ L ++ A+ S GQ+Q + + R ++ Q+L+ DE TA++D T I+
Sbjct: 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-- 181
Query: 1188 TIRREFANCTVIT---------VAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
+I RE A T IT VA + A+ V+ M +G +VE + + Q
Sbjct: 182 SIIRELAE-TGITQVIVTHEVEVARKTAS-----RVVYMENGHIVEQGDASCFTQPQTEA 235
Query: 1239 FAQLVKEYWSH 1249
F Y SH
Sbjct: 236 FKN----YLSH 242
|
Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
+ ++ E+K E I GE G+GKS L AI+G LP
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56
|
Length = 316 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQ 581
LS GQ++R+ LAR +++LD+P +ALD L + L++ VLL THQ
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA-LLAGLLRAHLARGGIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGG++QR+ +ARAL + L D+P LD AK +F +M L+++ + L+VT
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD--LMLELNRELNTSFLVVT 199
Query: 580 HQVDFLPAFDSILLISGGEI 599
H ++ D +L + G++
Sbjct: 200 HDLELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 519 RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVLL 577
R +LSGG K+R+ LARAL D + +LD+P + LD A+ L E + L++ KT+LL
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 227
Query: 578 VTH 580
TH
Sbjct: 228 TTH 230
|
Length = 340 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-06
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLV 578
LSGG+++R+ L R L D+ LLD+P + LDA++ +L EY TV+ V
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAV 214
Query: 579 THQVDFL 585
TH FL
Sbjct: 215 THDRYFL 221
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL 1090
G I +VG GSGKTTL AL R + P GG +I + + D + + + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1091 FSG 1093
Sbjct: 62 SGE 64
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVL 576
+ G++LSGGQ+QR+ +ARA+ ++ L+D+P SALD + L E +M L ++ T++
Sbjct: 147 QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST--LRIEELMHELKEQYTII 204
Query: 577 LVTH 580
+VTH
Sbjct: 205 IVTH 208
|
Length = 264 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-06
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 396 EPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELE--HSIFIKSADLS 453
P+R L + A + + + + L+A + + +A + + ++ + +S
Sbjct: 275 LPLRQLGAQYHARADGVAAAEALFAVLDAAP------RPLAGKAPVTAAPAPSLEFSGVS 328
Query: 454 WEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
P LR ++ V P E+ A+ G GAGKSTLL +LG + +G
Sbjct: 329 VAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 452 LSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
SW + L TL NIN+ + + I G+VG GKS+LL AILGE+ L+G
Sbjct: 8 FSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG 56
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGG +QR+ +A AL + + D+P +ALD T + ++ L ++ VL +T
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD--LLKDLQRELGMAVLFIT 212
Query: 580 HQVDFLPAF-----DSILLISGGEIIQAATYDHLL 609
H D ++++ GEI++ + +L
Sbjct: 213 H----DLGVVAELADRVVVMYKGEIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 61/197 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL------------------------- 497
+ ++ VKP E + G GAGK+T L + G L
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
Query: 498 ----------PRLQGMDLKMLPFGDL------------------TQIGE----RGVNLSG 525
RL + + F L + E R S
Sbjct: 81 GFVSDSTGLYDRLTAREN-LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 526 GQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVLLVTHQVDF 584
G +Q++ +ARAL D + LLD+P + LD + L E++ + K +L TH +
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQE 198
Query: 585 LPAF-DSILLISGGEII 600
+ D ++++ G ++
Sbjct: 199 VERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-06
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 485 GKSTLLAAILGELPRLQ-------GMDLKMLPFGDLTQIGER----GVNLSGGQKQRIQL 533
G T+L +L L + G + ++ ++ Q+ R +LSGG+KQR+ L
Sbjct: 123 GDDTVLDNVLEALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVL 179
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVT-HQVDFLPAF-DSI 591
AR L ++ ++L D+P LD +TAK + + +++T H + + D
Sbjct: 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239
Query: 592 LLISGGEIIQAATYD 606
+ + GEI + T D
Sbjct: 240 IWLENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Query: 513 LTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
+ + +R + +LSGGQ+QR LA L QD + LLD+P + LD L +M L+
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR--LMRELN 185
Query: 572 K--KTVLLVTHQVDFLPAFDSILLISGGEIIQAATY-DHLLVTSQ 613
KTV+ V H ++ QA+ Y DHL+V +
Sbjct: 186 TQGKTVVTVLHDLN-----------------QASRYCDHLVVLAN 213
|
Length = 255 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 28/221 (12%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDITTIGL- 1074
++ + + G ++G +G GKTT + A+ R+ + T G+I++DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1075 -YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+R +G++ Q P F P D + + + + + ++ L EV +
Sbjct: 80 PVAMRRRVGMVFQKPNPF---------PTMSVFDNVVAGLKL-AGIRDRDHLMEVAERSL 129
Query: 1134 EG------LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
G + + S GQ+Q + + R + +IL++DE T+++D A+ + +++
Sbjct: 130 RGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 1188 TIRREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEY 1225
+ T+I V H + A V D + G LVE+
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLV--GDLVEH 228
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK- 573
++ + + LSGGQ+QR+ +AR + ++ L+D+P SALD + E ++ L +
Sbjct: 139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST--TKIEDLIHKLKEDY 196
Query: 574 TVLLVTH---QVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQ 616
T+++VTH Q + + S L GEII++ D + + ++ +
Sbjct: 197 TIVIVTHNMQQATRVSKYTSFFL--NGEIIESGLTDQIFINPKDKR 240
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ DL Y N + GI+ ++G +G GK+T I L R+ E G +
Sbjct: 8 IKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1064 IDGLDITTIGLYD-------LRSNLGIIPQDPTLFSGSVRYNL-------DPLSQFTDQE 1109
+D +YD LR +G++ Q P F S+ N+ L Q E
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDE 125
Query: 1110 IWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILV 1169
I E + L QE K+ L+ + S GQ+Q + + R + + ++L+
Sbjct: 126 IVESALKGAAL--------WQEVKDKLN----KSALGLSGGQQQRLCIARALAIKPKVLL 173
Query: 1170 LDEATASIDNATDSILQNTIRREFANCTVITVAHRI---ATVMDCNMVLSMSD---GKLV 1223
+DE +++D ++ I + T+ V H + V D S + G++V
Sbjct: 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233
Query: 1224 EY 1225
E+
Sbjct: 234 EF 235
|
Length = 259 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTH- 580
LSGGQ+QR+ +AR + D+ L+D+P SALD + L E +M L K+ T+++VTH
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST--LKIEDLMVELKKEYTIVIVTHN 205
Query: 581 --QVDFLPAFDSILLISGGEIIQAATYDHLLVTSQE 614
Q + + + L+ G++I+ + + + Q+
Sbjct: 206 MQQASRVSDYTAFFLM--GDLIEFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 45/213 (21%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 1036 VVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQDP 1088
++G +G GK+T + L R+ + G++++DG +I + + +LR +G++ Q P
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94
Query: 1089 TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQE--KKEGLDSLVVQD--- 1143
F S+ N+ + + +K +L ++++ KK L V D
Sbjct: 95 NPFPMSIYDNVAYGPRI-----------HGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 1144 -GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVA 1202
S GQ+Q + + R + + ++++DE T+++D + +++ + T++ V
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVT 203
Query: 1203 HRI---ATVMDCNMVLSMSDGKLVEYDEPKKLL 1232
H + + V D M G L+E+++ +K+
Sbjct: 204 HNMQQASRVSDYTAFFLM--GDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGGQ +R+ +A + + +I LD+P + LD + K + + + TV+LVTH +
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205
Query: 583 DFLPAF-DSILLISGGEIIQAAT 604
D + + D +L++ G++I+ A+
Sbjct: 206 DDVAEYADDVLVLEHGKLIKHAS 228
|
Length = 287 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 15/66 (22%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALD----AKTAKFLF---TEYVMGALSKKT 574
NLSGGQ+QR+ +ARAL I L+D+P + +D AK + LF EY T
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--------T 200
Query: 575 VLLVTH 580
++LVTH
Sbjct: 201 IVLVTH 206
|
Length = 253 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 52/253 (20%)
Query: 1006 IYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI- 1062
+ +L I + + +R ++ + + G + +VG +GSGK+ AL RL+E GG +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74
Query: 1063 ------------IIDGLDITTIGLYDLR-SNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
+I+ + + + +R +++ +I Q+P +L+P+
Sbjct: 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT-------SLNPV------- 120
Query: 1110 IWEVTIPSQVLEKCQL------REVIQEKKEGLDSLVVQDGA--------NWSMGQRQLI 1155
T+ Q+ E +L E + E K LD + + + S G RQ +
Sbjct: 121 ---FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV 177
Query: 1156 GLGRVVLRRRQILVLDEATASIDNATDS-ILQ--NTIRREFANCTVITVAHRIATVMD-C 1211
+ + R +L+ DE T ++D + ILQ +++E + VI + H + V +
Sbjct: 178 MIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIA 236
Query: 1212 NMVLSMSDGKLVE 1224
+ VL M G+ VE
Sbjct: 237 DRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
L +R V LS GQ++R+ LAR L R +++LD+P +ALD K F E + G
Sbjct: 114 GLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD-KAGVARFAEAMAGHC 172
Query: 571 SK-KTVLLVTHQ 581
++ V+L THQ
Sbjct: 173 ARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +AR L + D+ L+D+P SALD + L E ++ L K ++++VTH
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST--LKVEELVQELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 46/157 (29%), Positives = 60/157 (38%), Gaps = 66/157 (42%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTL---LAAI----LGELPRLQGMDL--------KM 507
L ++ ++ + A+ GE G GKSTL L I GEL QG DL K+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL-YYQGQDLLKADPEAQKL 89
Query: 508 L----------PFGDL-------TQIGE---------------------RGVNL------ 523
L P+G L + E V L
Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD 149
Query: 524 ------SGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
SGGQ+QRI +ARAL D D+ + D+P SALD
Sbjct: 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKK--TVLLVT 579
LSGGQ+QR+ +ARAL + + L D+P +ALD + TA+ + ++ L++ T ++VT
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV---SIIRELAETGITQVIVT 198
Query: 580 HQVDFLPAFDS-ILLISGGEIIQAATYDH 607
H+V+ S ++ + G I++
Sbjct: 199 HEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 17/95 (17%)
Query: 512 DLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK----TAKFL--FTE 564
+L + ER V LSGG+ QR+ +A AL ++ D+YLLD+P + LD + AK + F E
Sbjct: 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503
Query: 565 YVMGALSKKTVLLVTHQV---DFLPAFDSILLISG 596
++KT L+V H + D++ D +++ G
Sbjct: 504 N-----NEKTALVVDHDIYMIDYVS--DRLIVFEG 531
|
Length = 591 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 446 FIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
I+ ++++ D P L++IN +KP E AI G GAGK+TL+ ++
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMR 51
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALS 571
T +G LSGGQKQRI +ARA+ ++ I +LD+ S+LD K+ ++L + + +
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS-EYLVQKTINNLKGNE 629
Query: 572 KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETF 631
+ +++ H++ + ++I ++S E D +
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDII----------------------- 666
Query: 632 GEHVSSKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFT 691
GE + EN K +D+ +NN + + I + G D L K +Y+T
Sbjct: 667 GEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTH---DALMKNKNGIYYT 723
Query: 692 L 692
+
Sbjct: 724 M 724
|
Length = 1466 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 59/208 (28%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTL---LAAIL--------------GELPRLQGM 503
P L NINL +K E I G+ G+GKSTL L +L G+ +LQG+
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 504 ----------------------DLKM------LPFGDLTQIGERGV-------------- 521
DL LP ++ + +R +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
LSGGQ Q + LA L + + + D+ S LD + + KT++ +TH
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
Query: 582 VDFLPAFDSILLISGGEIIQAATYDHLL 609
++ L D I+++ G+I+ +++L
Sbjct: 196 LEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 505 LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLF-- 562
L L G ++ +R LSGGQ+Q + L A I LLD+ +ALD KTA+F+
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 563 TEYVMGALSKKTVLLVTHQV-DFLPAFDSILLISGGEIIQ 601
T ++ K T L+VTH + D L + ++++ G+I+
Sbjct: 191 TAKIVEE-HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 75/212 (35%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL------------------------- 497
+ ++N E + + +AI G+ G+GKSTL+ I L
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 498 ----------------------------PRLQGMDL---KMLPFGDLTQIG-ERGV---- 521
P+ M+L K L +G R V
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 522 --NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------K 573
+SGGQ ++I + L + DI +LD+P + LD ++ VM L K
Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS-----KRQVMRLLKSLQTDENK 197
Query: 574 TVLLVTHQVDFLPAF-DSILLISGGEIIQAAT 604
T++LV+H ++ + + D ++++ G I+ +
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229
|
Length = 286 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVL 576
E ++LSGGQ+QR+ +AR L D+ LLD+P SALD ++ + E ++ L + T++
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI--ENMLLELRDQYTII 201
Query: 577 LVTHQV 582
LVTH +
Sbjct: 202 LVTHSM 207
|
Length = 252 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 513 LTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT---AKFLFTEYVMG 568
+ QI +R V LSGG+ QR+ +A L +D DIYLLD+P + LD + A + +
Sbjct: 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 569 ALSKKTVLLVTHQVDFL 585
+KT +V H D +
Sbjct: 165 N--EKTAFVVEH--DII 177
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGGQ+Q + LAR L + ++ LLD+P SALD T + + E++ + TV++VTH +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNL 222
|
Length = 276 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 1018 PLV-LRGITCTFEGGHKIGVV-------------GRTGSGKTTLISALFRLVEPTGGKII 1063
P + + GI +F H + V G G+GK+TL+ L + EPT G I
Sbjct: 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT 63
Query: 1064 IDGLDITTIGLYDLRSN-LGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIP--SQV 1119
I+ ++ + +GII Q+ ++ +V NL + + +++ V I ++
Sbjct: 64 INNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREM 122
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
+ + + K LD V AN S+ +Q++ + + ++ +++++DE T+S+ N
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKV----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178
Query: 1180 A-TDSI--LQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223
D + + N +R+E ++ ++H++A + C+ M DG V
Sbjct: 179 KEVDYLFLIMNQLRKEGT--AIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 29/218 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD--- 1076
L+GI+ T E G +G +G G+GKTT + L L++PT G++ + GL +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP-----WKRRK 90
Query: 1077 -LRSNLGII-PQDPTLFSGSVRYNLDPLSQFT-DQEIWEVTIPSQVLEKCQLREVIQEKK 1133
+G++ Q L+ ++L + F I++ L + ++ + E
Sbjct: 91 KFLRRIGVVFGQKTQLW-----WDLPVIDSFYLLAAIYD-------LPPARFKKRLDELS 138
Query: 1134 EGLD--SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
E LD L+ S+GQR + +L +IL LDE T +D ++N ++
Sbjct: 139 ELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKE 198
Query: 1192 EFAN--CTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226
TV+ +H + + VL + G+L+ YD
Sbjct: 199 YNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 509 PFGDLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFL-- 561
P L ++ ++ V LSGG+ QR+ +A L +D D+YLLD+P + LD AK +
Sbjct: 440 PLQ-LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
Query: 562 FTEYVMGALSKKTVLLVTH 580
E + T L+V H
Sbjct: 499 IAE-----EREATALVVDH 512
|
Length = 590 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 451 DLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
DL E + L+ +NL VK E AI G G+GKSTL I+G
Sbjct: 8 DLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52
|
Length = 251 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LS GQK+R+ +A L D D+ +LD+P + LD + + L ++ L KTV++ TH
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME--ILDRLHNQGKTVIVATH 196
Query: 581 QVDFLPAF-DSILLISGGEII 600
VD + D ++++ G ++
Sbjct: 197 DVDLAAEWADQVIVLKEGRVL 217
|
Length = 274 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 55/206 (26%), Positives = 78/206 (37%), Gaps = 61/206 (29%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLL---AAIL----GELPRLQGMDLKMLP--- 509
L NI+ ++ E I G G GKSTLL A+++ G L +G D+ L
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKPEI 78
Query: 510 --------------FGD-------------------------LTQIG------ERGVN-L 523
FGD L + + + L
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAEL 138
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTHQ 581
SGG+KQRI L R L + LLD+ SALD ++ K E + + ++ VL VTH
Sbjct: 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALD-ESNKHNVNEIIHRYVREQNIAVLWVTHD 197
Query: 582 VDFLP-AFDSILLISGGEIIQAATYD 606
D + A I L +Q A Y+
Sbjct: 198 KDEINHADKVITLQPHAGEMQEARYE 223
|
Length = 225 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-05
Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVT 579
+LS G++QR+++ +ALY+ + +LD+P + L + A LF ++ L+ KT++ +T
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF--EILRRLAAEGKTIIFIT 197
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQE 614
H++ + A D + ++ G+++ T D + T++E
Sbjct: 198 HKLKEVMAIADRVTVLRRGKVV--GTVDPVAETTEE 231
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 15/73 (20%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKF------LFTEYVM 567
++ + G +LSGGQ+QR+ +AR + ++ LLD+P SALD T + L +Y
Sbjct: 149 KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDY-- 206
Query: 568 GALSKKTVLLVTH 580
TV++VTH
Sbjct: 207 ------TVVIVTH 213
|
Length = 260 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-05
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 501 QGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTA-- 558
MD P D ++ LSGG+++R+ L R L + D+ LLD+P + LDA++
Sbjct: 147 IAMDALRCPPWD-AKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAW 201
Query: 559 --KFLFTEYVMGALSKKTVLLVTHQVDFL 585
+FL +Y TV+ VTH FL
Sbjct: 202 LEQFL-HDY------PGTVVAVTHDRYFL 223
|
Length = 556 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 43/181 (23%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP---------RLQGMDLK---ML 508
P L++ + VKP E + G G+G STLL A+ G+ K
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80
Query: 509 PFGDLTQIGE--------------------------RGVNLSGGQKQRIQLARALYQDRD 542
G++ + E RG+ SGG+++R+ +A AL
Sbjct: 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGI--SGGERKRVSIAEALVSRAS 138
Query: 543 IYLLDDPFSALDAKTA-KFLFTEYVMGALSKKTVLLVTHQ--VDFLPAFDSILLISGGEI 599
+ D+ LD+ TA + L M + K T + +Q + FD +L++ G
Sbjct: 139 VLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198
Query: 600 I 600
I
Sbjct: 199 I 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 519 RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVLL 577
R LSGG K+R+ LARAL D + +LD+P + LD A+ L E + L++ KT+LL
Sbjct: 132 RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 190
Query: 578 VTH 580
TH
Sbjct: 191 TTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 512 DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK 559
+ + + LSGG+KQRI L R L I LLD+ SALD +
Sbjct: 123 PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170
|
Length = 223 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 63/208 (30%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
+ ++L VK E + G GAGK+T I+G + L G D+ LP
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 510 -----------FGDLT-----------------QIGER-----------------GVNLS 524
F LT + E+ +LS
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLS 135
Query: 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT--VLLVTHQV 582
GG+++R+++ARAL + LLD+PF+ +D + + + ++ L + VL+ H V
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI--QKIIKILKDRGIGVLITDHNV 193
Query: 583 -DFLPAFDSILLISGGEIIQAATYDHLL 609
+ L D +I G+++ T + +
Sbjct: 194 RETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 48/233 (20%)
Query: 1012 RYRPNAPLVLRGITCTFEG-------------GHKIGVVGRTGSGKTTLISALFRLVEPT 1058
R PL+L ++ + G + VVGR+G GK+TL+ L L P+
Sbjct: 6 RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 1059 GGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
G+++ T L + R + ++ QD L W+ I +
Sbjct: 66 AGELLAG-----TAPLAEAREDTRLMFQDARLLP------------------WKKVIDNV 102
Query: 1119 VLE-KCQLREVIQEKKEGLDSLVVQDGAN-W----SMGQRQLIGLGRVVLRRRQILVLDE 1172
L K Q R+ + L ++ + D AN W S GQ+Q + L R ++ R +L+LDE
Sbjct: 103 GLGLKGQWRD---AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159
Query: 1173 ATASIDNATDSILQNTIRREFA--NCTVITVAHRIA-TVMDCNMVLSMSDGKL 1222
++D T +Q+ I + TV+ V H ++ V + VL + +GK+
Sbjct: 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 4e-05
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 47/195 (24%)
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNLGIIPQDPTLFS 1092
+G+ G G+G+T L ALF L P G+I +DG +T D +R+ + +P+
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE------ 82
Query: 1093 GSVRYNLDPLSQ--FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150
D + D + E S +L S G
Sbjct: 83 -------DRKREGLVLDLSVAENIALSSLL---------------------------SGG 108
Query: 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATV 1208
+Q + L R + R ++L+LDE T +D + + I RE A V+ ++ + +
Sbjct: 109 NQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI-RELADAGKAVLLISSELDEL 167
Query: 1209 MD-CNMVLSMSDGKL 1222
+ C+ +L M +G++
Sbjct: 168 LGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK 573
++ E LSGGQ+QR+ +ARA+ + L+D+P SALD TAK E ++ L K
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK---VEELIHELKKD 195
Query: 574 -TVLLVTHQV 582
T+++VTH +
Sbjct: 196 YTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 31/233 (13%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDI--TTIG 1073
L+ I + ++G +G GK+T I L +++ G++ +G +I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK- 1132
L +LR N+G++ Q F P S F D + I K +L+E++++
Sbjct: 88 LVELRKNIGMVFQKGNPF---------PQSIF-DNVAYGPRIHG-TKNKKKLQEIVEKSL 136
Query: 1133 ------KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ 1186
E D L Q + S GQ+Q + + R + +L++DE T+++D + ++
Sbjct: 137 KDVALWDEVKDRLHTQ-ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195
Query: 1187 NTIRREFANCTVITVAHRI---ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
I + T++ V H + A V D M G+LVE ++ K+ D
Sbjct: 196 ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM--GELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT 557
SGG++QR+ +AR D I LLD+P ++LDA
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 56/215 (26%), Positives = 110/215 (51%), Gaps = 30/215 (13%)
Query: 1037 VGRTGSGKTTLISALFRL--VEPTG---GKIIIDGLDITTIGL--YDLRSNLGIIPQDPT 1089
+G +G GK+T++ L R+ V P G++++DG D+ G+ +R +G++ Q P
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95
Query: 1090 LF-SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLR--EVIQEKKEGLDSLVVQDGAN 1146
F + S+R N+ ++ + +++EK LR + E K+ LD + G
Sbjct: 96 PFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEK-SLRGANLWNEVKDRLD----KPGGG 148
Query: 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDN-ATDSI--LQNTIRREFANCTVITVAH 1203
S GQ+Q + + R + +L++DE +++D +T +I L N +++++ T++ V H
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY---TIVIVTH 205
Query: 1204 RI---ATVMDCNMVLSMS----DGKLVEYDEPKKL 1231
+ A V D ++ G+LVE D+ +K+
Sbjct: 206 NMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240
|
Length = 258 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 38/238 (15%)
Query: 999 PPTGKVEIYDLQIRYR------PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALF 1052
P G VE D I++ PN +++ ++ G+ + + G G GK S+LF
Sbjct: 440 PGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGK----SSLF 495
Query: 1053 RLVEPTGGKIIIDGLDITTIGLY--DLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTD 1107
R I+ L G + L +PQ P + G++R + D
Sbjct: 496 R---------ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546
Query: 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW----SMGQRQLIGLGRVVLR 1163
+ + + + Q+L+ QL I E++ G ++ +W S G++Q I + R+
Sbjct: 547 RGLSDKDL-EQILDNVQL-THILEREGGWSAV-----QDWMDVLSGGEKQRIAMARLFYH 599
Query: 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221
+ Q +LDE T+++ + + R T+ +V+HR + +L M DG+
Sbjct: 600 KPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYM-DGR 654
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 43/184 (23%), Positives = 62/184 (33%), Gaps = 66/184 (35%)
Query: 476 FAICGEVGAGKSTLLAAI----LGELPRLQ------------------------------ 501
F ICG GAGKST+L AI G+ PR
Sbjct: 31 FLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYR 90
Query: 502 -----GMDLK------MLPFGDLTQIGERGV-NLSGGQKQRIQLARAL-----YQDR--- 541
G+D +LP G+ + R V LSGG+ L+ AL Q+R
Sbjct: 91 VERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGA 150
Query: 542 --DIYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTVLLVTHQVDFLPAFDSILLI 594
+ +D+ F LD + E V AL + V +++H + L +
Sbjct: 151 RLEALFIDEGFGTLDPEA-----LEAVATALELIRTENRMVGVISHVEELKERIPQRLEV 205
Query: 595 SGGE 598
Sbjct: 206 IKTP 209
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGA 569
L + R V+ LSGG++QR +A + QD LLD+P SALD A L + +
Sbjct: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 570 LSKKTVLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
TV+ V H ++ + D ++ + GGE+I T L+
Sbjct: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 49/165 (29%)
Query: 461 PTL-RNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP--------------------R 499
P L +N+N + + A+ G G GKST+L I GEL
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581
Query: 500 LQGMDLKMLPF--------GDLTQ-----IGERGVN----------LSGGQKQRIQLARA 536
+ G+DL P G Q +G GV LSGGQK R+ A+
Sbjct: 582 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 641
Query: 537 LYQDRDIYLLDDPFSALDAKTAKFLFTEYVMG-ALSKKTVLLVTH 580
++ I LLD+P + LD + L + G L + VL+V+H
Sbjct: 642 TFKKPHILLLDEPSNHLDLDAVEAL----IQGLVLFQGGVLMVSH 682
|
Length = 718 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 482 VGAGKSTLLAAILG------ELPRLQGMDLKMLPFGDLT-QIGERGVNLSGGQKQRIQLA 534
VGA L+ +LG E + ++L F L NLS GQ++R+++A
Sbjct: 102 VGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161
Query: 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL------SKKTVLLVTHQVDFLPAF 588
RAL + LLD+P + L+ + TE + + T+LL+ H + +
Sbjct: 162 RALATQPKLLLLDEPAAGLNPEE-----TEELAELIRELRDRGGVTILLIEHDMKLVMGL 216
Query: 589 -DSILLISGGEII 600
D I++++ GE+I
Sbjct: 217 ADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 31/237 (13%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ DL ++ R ++ ++ G +G+ G G+G++ L+ A+ L +P G+I++
Sbjct: 259 EVEDLSVKDRRGVT-AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317
Query: 1065 DGLDITTIGLYDLRSNLGI--IPQD-------PTLFSGSVRYNLDPLSQFTDQEI--WEV 1113
+G D+ R LG+ +P+D L S+ NL L + +
Sbjct: 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL---SLAENL-VLGRHDKKPFSRGGF 373
Query: 1114 TIPSQVLEKCQLREVIQE---KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
+ + RE+I+E + D+ + S G +Q + L R + RR +L+
Sbjct: 374 LDRRAIRKFA--RELIEEFDVRAPSPDAPA----RSLSGGNQQKLILARELARRPDLLIA 427
Query: 1171 DEATASIDNATDSILQNTIRREF-ANCTVITVA---HRIATVMDCNMVLSMSDGKLV 1223
+ T +D + + A V+ ++ I + D V + +G++V
Sbjct: 428 AQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAV--IYEGRIV 482
|
Length = 501 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 72/215 (33%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLKMLPF-------- 510
+++L V E + G GAGK+T ++G +PR G D+ +LP
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 511 --------------------------GDLT--QIGER-----------------GVNLSG 525
DL+ Q +R G +LSG
Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSG 140
Query: 526 GQKQRIQLARALYQDRDIYLLDDPF------SALDAKTAKFLFTEYVMGALSKKTVLLVT 579
G+++R+++ARAL + LLD+PF S +D K + +G VL+
Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG------VLITD 194
Query: 580 HQV-DFLPAFDSILLISGGEIIQAATYDHLLVTSQ 613
H V + L + ++S G +I T +L
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
Length = 241 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 5e-05
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKKTVLLV 578
G LSGGQ+QR+ +ARA+ + ++ L+D+P SALD TAK E ++ K ++++V
Sbjct: 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAK--IEELILELKKKYSIIIV 280
Query: 579 THQV 582
TH +
Sbjct: 281 THSM 284
|
Length = 329 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 21/94 (22%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT---VLLVT 579
LSGG+KQR+ + RAL ++ L+D+P ++LD + L Y + L+++ +L V+
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-Y-LERLAREINIPILYVS 186
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ 613
H +D EI++ A D ++V Q
Sbjct: 187 HSLD--------------EILRLA--DRVVVLEQ 204
|
Length = 352 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 60/154 (38%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR------LQGMDLKMLP----- 509
+ +++LEV E + G GAGK+T I+G + L D+ LP
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 510 -------------FGDLT--------------------------------QIGE----RG 520
F LT I +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA 137
Query: 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
+LSGG+++R+++ARAL + LLD+PF+ +D
Sbjct: 138 YSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGGQ +R+ +A L + ++ +LD+P + LD K + + S +TV+LVTH +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 583 DFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQ--DLVNAHK 623
D + + D + L+ G II T S FQ D + AH+
Sbjct: 205 DDVADYADYVYLLEKGHIISCGT------PSDVFQEVDFLKAHE 242
|
Length = 288 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 35/216 (16%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ---- 1086
G +G++G G+GKTTL+ A+ L+ P G + + G ++G +PQ
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVPQRHEF 60
Query: 1087 --------DPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138
T+ SG + + + + L + L E+ L
Sbjct: 61 AWDFPISVAHTVMSGRTGH----IGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL-- 114
Query: 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQNTIRREFANCT 1197
S GQRQ + + R + R +L+LDE +D T + + + I A
Sbjct: 115 ---------SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1198 VITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232
++ H +A M C+ V+ + +G+++ P++L
Sbjct: 166 ILMTTHDLAQAMATCDRVV-LLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 65/184 (35%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLL---------------------------AAI-- 493
L +I+ + + + A+ GE GAGKSTLL AA+
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 494 ----------------------LGELPRLQGM-DLKMLPFGDLTQIGERGVN-------- 522
LG+LP G+ + ++L + Q+ GV+
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK 139
Query: 523 -LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVT 579
LS GQ+Q +++A+AL ++ + D+P S+L A+ + LF V+ L + +L V+
Sbjct: 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAEGRVILYVS 197
Query: 580 HQVD 583
H+++
Sbjct: 198 HRME 201
|
Length = 501 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 56/269 (20%), Positives = 92/269 (34%), Gaps = 67/269 (24%)
Query: 259 VVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKV 318
++ YYS LA +A + ++ + L LQ + + + K I+ + V
Sbjct: 268 GLMFYYSWKLALVAVALA-LVAIAVTLVLGLLQVRKERRLLELSGK----ISGLTVQ--- 319
Query: 319 LKLYAWDSYFKNVIEKLR---SEE---YGWLKVLQLQKGYY------------------- 353
N I KLR +E W K+ Q+
Sbjct: 320 ---------LINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPV 370
Query: 354 ---MVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIE 410
LF ++ L+G A L FL F + + I
Sbjct: 371 LTSAALFAAAISLLGGAGLSLGSFLA----------FNTAFGSFSGAVT---QLSNTLIS 417
Query: 411 AKVSL---DRIANFLEA-PELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNI 466
+ +R LEA PE+ + +L +I + + D L ++
Sbjct: 418 ILAVIPLWERAKPILEALPEVDEAKTDP----GKLSGAIEVDRVTFRYRPDG-PLILDDV 472
Query: 467 NLEVKPAEKFAICGEVGAGKSTLLAAILG 495
+L+++P E AI G G+GKSTLL +LG
Sbjct: 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERG 520
L+ + L VK E AI G G+GKSTLL A+L L ++++L L ++ E
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDDPSSGEVRLLG-QPLHKLDEDA 81
Query: 521 V 521
Sbjct: 82 R 82
|
Length = 228 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLV 578
+LSGG+K+R+ +A + + + +LD+P + LD + K L + L + TV+
Sbjct: 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPETYGMTVIFS 194
Query: 579 THQVDFLPAF-DSILLISGGEIIQAAT 604
THQ+D +P D I ++ G I+ T
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVT 579
NLSGGQKQR+ +A L + I +LD+ S LD K + + K TV+ +T
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA-GKEQILKLIRKLKKKNNLTVISIT 201
Query: 580 HQVDFLPAFDSILLISGGEII 600
H +D D +L++ G+++
Sbjct: 202 HDIDEANMADQVLVLDDGKLL 222
|
Length = 282 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMD 504
L +++ +V P E +AI G GAGK+TLL+ + GE P G
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
LSGGQ +R+ +A L + I +LD+P + LD K K L T + S T++LVTH +
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 583 DFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMG 627
D + + D + ++ G+++ + FQD+ ++ +G
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGK------PKDIFQDVDFLEEKQLG 245
|
Length = 280 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 49/235 (20%), Positives = 104/235 (44%), Gaps = 15/235 (6%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074
N + L I+ TFE ++G +GSGK+TL++ L++ G I + DI
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG--DIYIGDK 93
Query: 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVL--------EKCQLR 1126
+ + +R + + QF + ++++ TI ++ +K + +
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 1127 EVIQEKKEGL---DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
++ + + DS + + S GQ++ + + ++ + +IL+ DE TA +D +
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 1184 ILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ I A N TV + H + V++ + V+ M GK+++ P ++ Q
Sbjct: 214 EMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
V+ G++ T G G++G G+GK+T+ + + P GKI + G+ + R+
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL-ARA 114
Query: 1080 NLGIIPQDPTL-FSGSVRYNLDPLSQF---TDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
+G++PQ L +VR NL ++ + +EI E IPS +LE +L E K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREI-EAVIPS-LLEFARL-----ESKA- 166
Query: 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
D+ V ++ S G ++ + L R ++ Q+L+LDE T +D
Sbjct: 167 -DARV----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+L ++ TF G G++G GSGK+TL+ L R P+ G+I++D + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1080 NLGIIPQD-PTLFSGSVRYNL--------DPLSQF--TDQEIWEVTIPSQVLEKCQLREV 1128
+ +PQ P +VR + L +F D+E E I L+ R V
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV 145
Query: 1129 IQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT 1188
DSL S G+RQ + +V + + L+LDE T+++D A +
Sbjct: 146 --------DSL--------SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189
Query: 1189 IRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233
+ R + TVI V H I C+ ++++ G+++ P +L+R
Sbjct: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
L ++L V+P E A+ GE GAGKSTL+ + G P G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG 63
|
Length = 500 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-05
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 26/253 (10%)
Query: 1001 TGKVEIYDLQIRYRPNAPLVLRGI---TCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057
+ + + ++ Y P + + + TF+ V+G TGSGK+T+I L+
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1058 TGGKIIIDGLDITT-----IGLYDLRSNLGIIPQDP--TLFSGSVRYNL--DPLSQFTDQ 1108
G+ I+ I + LR +G++ Q P LF ++ ++ P++ ++
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1109 EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQIL 1168
+ +P ++L+ QL E V + S GQ++ + L ++ L
Sbjct: 124 QEAYKKVP-ELLKLVQLPE----------DYVKRSPFELSGGQKRRVALAGIIAMDGNTL 172
Query: 1169 VLDEATASIDNATDSILQNTIRREFANCT--VITVAHRIATVMD-CNMVLSMSDGKLVEY 1225
VLDE T +D + N R +I V H + V+ + V+ M +GK++
Sbjct: 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
Query: 1226 DEPKKLLRRQDSL 1238
P ++ Q+ L
Sbjct: 233 GSPFEIFSNQELL 245
|
Length = 289 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497
L N++L + P E+ + G GAGKSTLL + GEL
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53
|
Length = 530 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 70/227 (30%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELP----------RLQGMDLK-------- 506
++NL +K E A+ GE G+GKS AILG LP L G L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 507 --------MLPFGDLTQIGE------------------------RGVNL----------- 523
F L +G V L
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP 123
Query: 524 ---SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLV 578
SGG QR+ +A AL + + D+P + LD + + + +LL+
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD-VVNQARVLKLLRELRQLFGTGILLI 182
Query: 579 THQVDFLPAF-DSILLISGGEIIQAATYDHLLV--TSQEFQDLVNAH 622
TH + + D + ++ G I++ T + + + L++AH
Sbjct: 183 THDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L+++NLE++ E AI G G+GKSTLL +LG
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLG 52
|
Length = 226 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-------KTAKFLFTEYVMGALSKKTV 575
LSGGQKQR+ +A L + + D+P + LD T K L +Y + T+
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI------TI 198
Query: 576 LLVTHQVDFLPAFDSILLISGGEIIQAAT 604
+L+TH ++ D I+++ G+++ T
Sbjct: 199 ILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK-TAKFLFTEYVMGALSKK-TVLLVTH 580
LSGGQ+QR+ +ARAL ++ L D+P + LD + TAK E + L K T++LVTH
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI---ESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 519 RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TV 575
R LSGG++QR+ +ARAL + + L D+P LDA+ A +F ++G L++
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQGTAF 199
Query: 576 LLVTH 580
L+VTH
Sbjct: 200 LVVTH 204
|
Length = 233 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK-TV 575
++LSGGQ+QR+ +AR L + LLD+P SALD AK E ++ L ++ ++
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI---EELITELKEEYSI 216
Query: 576 LLVTHQV-DFLPAFDSILLISGGEIIQAATYDHLLVT--SQEFQDLVN 620
++VTH + L D G++++ + + + Q+ +D +N
Sbjct: 217 IIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYIN 264
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
++ + + LSGGQ+QR+ +ARAL + L+D+P SALD A E + S+ T
Sbjct: 143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHSLRSELT 201
Query: 575 VLLVTHQV 582
+ +VTH +
Sbjct: 202 IAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 512 DLTQIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK---TAKFLFTEYVM 567
L + +R V+ LSGG+ QR+ +A AL +D D+Y D+P S LD + A + E
Sbjct: 202 GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL-- 259
Query: 568 GALSKKTVLLVTH 580
A K V++V H
Sbjct: 260 -AEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 22/224 (9%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL- 1077
+V+ ++ T G G++G G+GK+T+ L ++ P GKI + L L
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV--LGEPVPSRARLA 75
Query: 1078 RSNLGIIPQDPTL-FSGSVRYNLDPLSQF---TDQEIWEVTIPSQVLEKCQLREVIQEKK 1133
R +G++PQ L +VR NL ++ + +EI E IPS +LE +L E K
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREI-EAVIPS-LLEFARL-----ESK 128
Query: 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF 1193
D V A S G ++ + L R ++ Q+L+LDE T +D ++ +R
Sbjct: 129 A--DVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182
Query: 1194 ANCTVITVAHRIATVMD--CNMVLSMSDGKLVEYDEPKKLLRRQ 1235
A I + + C+ + + G+ + P L+ Q
Sbjct: 183 ARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 69/371 (18%), Positives = 137/371 (36%), Gaps = 29/371 (7%)
Query: 513 LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK 572
+ R LSGG+++R+ A L D + D+P S LD+ A + A
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 573 KTVLLVTHQ--VDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPET 630
KT++ HQ + FD I+L++ G + + D + F DL + E P
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV---PFFSDLGHPCPENYNPAD 273
Query: 631 FGEHVSSKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYF 690
F V + +E + E S A I ++ + + +
Sbjct: 274 FYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333
Query: 691 TLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLV-IVYSGIGIGMMFLLLTRSFLVVY 749
+ + F +L+ W+ + + + +++L+ + + I IG+++L + V
Sbjct: 334 GYNASWWTQFYA--LLKRSWL-SVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGV- 389
Query: 750 LGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLD----LSIKSTIAV 805
+ ++F L + F + V +++L + + L S +
Sbjct: 390 --QNINGALFLFLTNMTF---QNVFPVINV------FTAELPVFLRETRSGLYRVSAYFL 438
Query: 806 GTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRIN-GTRSSLLASH 864
T+A + F++L AL + MI L ++ + N T L S
Sbjct: 439 AKTIAELPLFIILPAL---FTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISC 495
Query: 865 LAETVAGAMTI 875
+ + A+T+
Sbjct: 496 AFSSTSMALTV 506
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 1035 GVVGRTGSGKTTLISALFR---LVE--PTGGKIIIDGLDI--TTIGLYDLRSNLGIIPQD 1087
++G +G GK+T + L R LVE G +I +G +I + +LR +G++ Q
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96
Query: 1088 PTLFSGSVRYNLD--PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145
P F S+ N+ P T + I Q L+K L +++K + +
Sbjct: 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDK-------LNTNAL 149
Query: 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205
+ S GQ+Q + + R + ++++DE T+++D + ++ I + T+I V H +
Sbjct: 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL---------RSNL 1081
G +G+VG +GSGKTTL++AL + P G++ D LY L R+
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 1082 GIIPQDP 1088
G + Q P
Sbjct: 92 GFVHQHP 98
|
Length = 258 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556
LSGGQ+QR+ + RA+ ++ ++L D+P S LDAK
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168
|
Length = 356 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 71/400 (17%), Positives = 144/400 (36%), Gaps = 50/400 (12%)
Query: 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLV 177
L + + + ++ +G ++ + S LK + G + + L ++
Sbjct: 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGG---RDRSVLWWVPLVVI 61
Query: 178 KCVESLAGRHWFFQSRLTG---LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVD 234
L G F + L K+ + + K L L + +G +++ +T D
Sbjct: 62 GLA-VLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFD 120
Query: 235 A-----YRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLG---NSP 286
+ F + T + + +V++YYS L I +++ +L++L +
Sbjct: 121 SEQVASAATDAFIVLVRE---TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR 177
Query: 287 LAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVL 346
L ++ + Q + E L +V+KL+ +Y + + +
Sbjct: 178 LRRISKEIQNSMGQVTT----VAEETLQGYRVVKLFGGQAY--------ETRRFDAVSNR 225
Query: 347 QLQKGYYMVLFWS--SPI--LIGAATLLTCYFLGIPLNPSNVFT------FLATLRILQE 396
+ M S SPI LI + L F+ + + T F+ + L
Sbjct: 226 NRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIR 285
Query: 397 PIRLLPDVFGAFIEAKVSLDRIANFL-EAPELQNS--DMQQVCSRAELEHSIFIKSADLS 453
P++ L +V + + + L PE +++ E + F
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR 345
Query: 454 WEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
P L +I+L ++P E A+ G G+GKSTL+ I
Sbjct: 346 -------PALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L+ I+L V+ E I G G+GKSTLL + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50
|
Length = 240 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L+ I+L VK E I G G+GKSTLL I
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI 46
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582
SGGQ+QRI +ARAL + LLD+P SALD ++ + E +M + T ++VTH +
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHNL 206
Query: 583 DFLPAF-DSILLISGGEIIQAATYDHLLVTSQE 614
D + G++I+A + + + ++
Sbjct: 207 QQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK 239
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 518 ERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
R LSGG+KQR+ + RAL + L+D+P +ALD
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-KTVLLVTHQ 581
LS G +QR+ LA+AL D + +LD+P + LD + + V+ + K KT++L TH
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN--QLVEIRNVIKNIGKDKTIILSTHI 191
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQDLV--NAHKETMGPETFGEHVSSK 638
+ + A D +++I+ G+I+ D L +++ V + ET E S K
Sbjct: 192 MQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEISSVK 251
Query: 639 EDENEVKKVEDEGHNNTSPA 658
K+ E N+T P
Sbjct: 252 NTGGNTWKLTFETPNDTRPE 271
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 66/270 (24%), Positives = 118/270 (43%), Gaps = 36/270 (13%)
Query: 979 MRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVG 1038
I A L+ + + + +E+ +L + Y L I+ +G
Sbjct: 4 HGITLMALPLLDVLNLSDEQT---ALEVRNLNLFY--GDKQALFDISMRIPKNRVTAFIG 58
Query: 1039 RTGSGKTTLISALFR---LVE--PTGGKIIIDGLDITTIGL--YDLRSNLGIIPQDPTLF 1091
+G GK+TL+ R LV+ G+I +DG +I + +LR +G++ Q P F
Sbjct: 59 PSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118
Query: 1092 SGS----VRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
S V Y L L ++ + + + + L L + E K+ L ++
Sbjct: 119 PKSIYENVVYGLR-LQGINNRRVLDEAV-ERSLRGAALWD---EVKDRLH----ENAFGL 169
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDN-ATDSI--LQNTIRREFANCTVITVAHR 1204
S GQ+Q + + R + ++L+LDE T+++D +T I L ++ ++ T++ V H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKY---TIVIVTHN 226
Query: 1205 I---ATVMDCNMVLSMSDGKLVEYDEPKKL 1231
+ A V D + M GKLVEY + L
Sbjct: 227 MQQAARVSDYTAFMYM--GKLVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLV 578
G+ LSGGQ+QR+ +AR L + ++ L+D+P SALD + + E +M L + T+ +V
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST--MRIEELMQELKQNYTIAIV 202
Query: 579 THQV 582
TH +
Sbjct: 203 THNM 206
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 69/204 (33%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKST---LLAAIL----GE----------------- 496
L+ I+ ++ E G GAGK+T +L+ +L GE
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 497 ---------------LPRLQGMDL--------------------KMLPFGDLTQIGERGV 521
LP + L ++L +L R
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR-- 152
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA----KTAKFLFTEYVMGALSKKTVLL 577
LS GQ+ R ++A AL + +I LD+P LD FL EY TVLL
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL-KEYN--RERGTTVLL 209
Query: 578 VTHQVDFLPAF-DSILLISGGEII 600
+H + + A +L+I G ++
Sbjct: 210 TSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 512 DLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK---TAKFLFTEYVM 567
L I +R + LSGG+ QR+ +A AL +D D Y D+P S LD + L E
Sbjct: 201 GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA- 259
Query: 568 GALSKKTVLLVTH 580
K VL+V H
Sbjct: 260 ---EGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVD 583
SGG + RI LARAL+ + D+ LLD+P + LD +L T + KT ++V+H +
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP---KTFIVVSHARE 402
Query: 584 FLPA-FDSILLISGGEIIQ-AATYDHLLVTSQE 614
FL IL + G +++ YD T +E
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYDTFERTREE 435
|
Length = 718 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKK 573
++ ++LSGGQ+QR+ +AR L + ++ L+D+P SALD T K E ++
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK--IEELIINLKESY 200
Query: 574 TVLLVTHQV 582
T+++VTH +
Sbjct: 201 TIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 512 DLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK---TAKFLFTEYVM 567
+L + +R + LSGG+ QR+ +A AL +D D Y D+P S LD K A L E
Sbjct: 128 ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-- 185
Query: 568 GALSKKTVLLVTH 580
A VL+V H
Sbjct: 186 -AEDDNYVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 53/198 (26%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM---------------- 503
P +N+NL ++ E+ AI GE G GK+TLL ++GEL G
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDH 391
Query: 504 ------DLKMLPF-GDLTQIGE-----RGV----------------NLSGGQKQRIQLAR 535
DL + + Q G+ RG LSGG+K R+ +
Sbjct: 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGK 451
Query: 536 ALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTHQVDFLPAFDS-IL 592
+ Q ++ ++D+P + +D ++ + L AL K T++ V+H +F+ + + I+
Sbjct: 452 LMMQKPNVLVMDEPTNHMDMESIESLNM-----ALEKYEGTLIFVSHDREFVSSLATRII 506
Query: 593 LISGGEIIQ-AATYDHLL 609
I+ ++ + TY+ L
Sbjct: 507 EITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L+ +NL VK E AI G G+GKSTL I G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 29/212 (13%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL---------RSNL 1081
G +G+VG +GSGKTTL+ + + P G + D LY + R+
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 1082 GIIPQDPTLFSGSVRYNLDPLSQFTDQ--EIWEVTIPSQVLEKCQLREVIQE--KKEGLD 1137
G + Q+P D L I E + +R Q+ ++ +D
Sbjct: 92 GFVHQNP----------RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141
Query: 1138 SLVVQD-GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIR---REF 1193
+ D +S G +Q + + R ++ R +++ +DE T +D + + L + +R RE
Sbjct: 142 LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201
Query: 1194 ANCTVITVAHRIATV-MDCNMVLSMSDGKLVE 1224
V+ V H +A + + ++ M G++VE
Sbjct: 202 -GLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 516 IGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
+G GV LS Q++R+ +A L + I +D+P S LDA+ A + + +T
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071
Query: 575 VLLVTHQ--VDFLPAFDSILLIS-GGEIIQAATY---DHLLVTSQEFQDLVNAHKETMGP 628
V+ HQ +D AFD +LL+ GG++I + H ++ E V KE P
Sbjct: 1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNP 1131
Query: 629 ETFGEHVSS 637
T+ VSS
Sbjct: 1132 ATWMLEVSS 1140
|
Length = 1470 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L++++L + P E A+ G GAGKSTLL + G
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK----FLF---TEYVMGALSKKTV 575
LSGG++QR+ LARA D+ D+P LD T LF E T+
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT------TL 200
Query: 576 LLVTHQVDFLPAFDSILLISGGEIIQAA 603
+LVTH D L + G +++ A
Sbjct: 201 VLVTHDPQLAARCDRQLRLRSGRLVEDA 228
|
Length = 228 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
+++L VK E A+ GE GAGKSTL+ + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ 55
|
Length = 501 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALD--AKTA--KFLFTEYVMGALSKKTVLLV 578
LS GQ+ R +LA AL + LD+P LD A+ +FL EY + TVLL
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL-KEY--NEERQATVLLT 213
Query: 579 THQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
TH D + D +LLI G+++ T L
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 43/217 (19%)
Query: 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074
P +L+ I+ +F G KIGV+G G+GK+TL+ I+ G+D G
Sbjct: 15 PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLR-------------IMAGVDKEFNGE 61
Query: 1075 YDLRSNL--GIIPQDPTL-FSGSVRYN--------LDPLSQF-------------TDQEI 1110
+ G +PQ+P L + +VR N D L +F D +
Sbjct: 62 ARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 1111 WEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG----ANWSMGQRQLIGLGRVVLRRRQ 1166
E ++++ ++ ++ + +D+L S G+R+ + L R++L +
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 1167 ILVLDEATASIDNATDSILQNTIRREFANCTVITVAH 1203
+L+LDE T +D + + L+ + +E+ TV+ V H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHL-QEYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 21/231 (9%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISAL--FRLVEPTGGKI 1062
EI DL + +L+G+ T + G ++G GSGK+TL + E T G+I
Sbjct: 5 EIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63
Query: 1063 IIDGLDITTIGLYDLRSNLGIIP--QDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVL 1120
+ DG DI + + R+ GI Q P G V N D L + I + +
Sbjct: 64 LFDGEDILELSPDE-RARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFI 120
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGAN--WSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
++ L+E + GLD ++ N +S G+++ + +++L ++ +LDE + +D
Sbjct: 121 KE--LKEKA--ELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
Query: 1179 NATDSILQ-----NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
D++ N +R E +IT R+ + + V + DG++V+
Sbjct: 177 --IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 447 IKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
IK +S E LR +NLEV+P E AI G G+GKSTL A + G
Sbjct: 4 IKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
|
Length = 248 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
P L++++ + +K AI G G+GKST+L
Sbjct: 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL 44
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK- 573
++ + + LSGGQ+QR+ +ARAL + LLD+P SALD ++ + E ++ LS
Sbjct: 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI--EELLKELSHNL 192
Query: 574 TVLLVTHQV 582
++++VTH +
Sbjct: 193 SMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 40/218 (18%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL 1067
D+ + +R N LR + T GG +VG GSGK+TL AL V GKI I G
Sbjct: 11 DVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 1068 DITTIGLYDLRSNL-GIIPQD-------PTLFSGSV---RYNLDPLSQFTDQEIWEVTIP 1116
L+ NL +PQ P L V RY + +
Sbjct: 70 PTRQA----LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG----------HMGWLRRA 115
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVV---QDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
K + R+++ +D + Q G S GQ++ + L R + ++ Q+++LDE
Sbjct: 116 -----KKRDRQIVTAALARVDMVEFRHRQIG-ELSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 1174 TASIDNATDS---ILQNTIRREFANCTVITVAHRIATV 1208
+D T++ L +R E T++ H + +V
Sbjct: 170 FTGVDVKTEARIISLLRELRDE--GKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
++ +++ RY LV+ G++ + G G++G G+GKTT + L L P
Sbjct: 4 SVAPIDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV 1119
G I + G + + + R +G++PQ F NLDP FT +E V
Sbjct: 62 GSISLCGEPVPSRARH-ARQRVGVVPQ----FD-----NLDP--DFTVRENLLVFGRYFG 109
Query: 1120 LEKCQLREVIQEKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
L R ++ E L++ S G ++ + L R ++ +LVLDE T +
Sbjct: 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169
Query: 1178 D 1178
D
Sbjct: 170 D 170
|
Length = 306 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA-KTAKFLFTEYVMGALSKKTVLLV 578
++LSGGQ+QR+ +AR L I L D+P SALD TA+ + +M T+++V
Sbjct: 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR--IEDLIMNLKKDYTIVIV 209
Query: 579 THQV 582
TH +
Sbjct: 210 THNM 213
|
Length = 258 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 464 RNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
R+++ ++ P E I GE G+GK+TLL I G L G
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
|
Length = 258 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 519 RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLV 578
RG+ SGG+++R+ +A + + + +LD+P S LDA A L A KT++
Sbjct: 205 RGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262
Query: 579 THQVD--FLPAFDSILLISGG 597
HQ FDS+L++S G
Sbjct: 263 MHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556
SGG++QR+ +AR D I LLD+P ++LDA
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDAT 186
|
Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
L N++LE++ E I GE G+GKSTL + G G
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
|
Length = 252 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKFLFTEYVMGALSKK---TVLLV 578
LSGG +QR+ +A AL + + + D+P +ALD A+ L ++ L ++ ++L+
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL---DLLKELQREKGTALILI 210
Query: 579 THQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
TH + + D + ++ G I++ + +
Sbjct: 211 THDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQ 581
LSGGQ+QR+ +AR + ++ L+D+P SALD + L E ++ L +K T+++VTH
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST--LKIEELIEELKEKYTIIIVTHN 206
Query: 582 V 582
+
Sbjct: 207 M 207
|
Length = 252 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK-FLFTEYVMGALSKKTVLLVTHQ 581
LSGGQK+R+ LA + D + +LD+P LD K + F+ + KK +++VTH
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 582 VD-FLPAFDSILLISGGEII 600
+D L D ++++ G++I
Sbjct: 211 MDQVLRIADEVIVMHEGKVI 230
|
Length = 289 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
R+++ ++ P E I GE G+GK+TLL A+ L G
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
|
Length = 258 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQ---DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QRI+LA+ L + + +Y+LD+P + L K L V+ L
Sbjct: 162 KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE--VLQRLV 219
Query: 572 KK--TVLLVTHQVDFLPAFDSILLIS------GGEIIQAAT 604
K TV+++ H +D + D I+ + GG+++ + T
Sbjct: 220 DKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 46/182 (25%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG- 1066
L + N L +GIT F GR+G+GKT+LI+A+ L P G+I+++G
Sbjct: 14 CLTV----NLTLPAQGITAIF---------GRSGAGKTSLINAISGLTRPQKGRIVLNGR 60
Query: 1067 --LDI-TTIGLYDLRSNLGIIPQDPTLF-----SGSVRYNLDP--LSQFTDQEIWEVTIP 1116
D I L + +G + QD LF G++RY + ++QF D+ +
Sbjct: 61 VLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQF-DKIV------ 113
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+L G++ L+ + + S G++Q + +GR +L ++L++DE AS
Sbjct: 114 -ALL--------------GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 1177 ID 1178
+D
Sbjct: 159 LD 160
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 66/160 (41%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL------GEL-----PRLQGMDLK-M 507
N ++NI+ ++P E + GE G+GKST A+L GE+ P L ++ + +
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQP-LHNLNRRQL 357
Query: 508 LPFG------------------DLTQIGERG-----------------------VNL--- 523
LP ++ QI E G V L
Sbjct: 358 LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE 417
Query: 524 ---------SGGQKQRIQLARALYQDRDIYLLDDPFSALD 554
SGGQ+QRI +ARAL + +LD+P S+LD
Sbjct: 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 47/176 (26%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLL---------AAILGELPRLQGMDLKM------ 507
L NI+ VKP A+ GE GAGK+TLL I GE+ + G L
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNFQRST 81
Query: 508 -------LPFGDLTQIGE--------RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA 552
+ +LT E RG LS Q++R+ + L I LD+P S
Sbjct: 82 GYVEQQDVHSPNLTVR-EALRFSALLRG--LSVEQRKRLTIGVELAAKPSILFLDEPTSG 138
Query: 553 LDAKTAKFLFTEYVMGALSK-----KTVLLVTHQ--VDFLPAFDSILLI-SGGEII 600
LD++ A ++ L K + +L HQ FD +LL+ GG+ +
Sbjct: 139 LDSQAA-----YNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 38/250 (15%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG-----GKIIIDGLDI--TTI 1072
+L G++ ++G +G GK+T + L R+ E G++ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 1073 GLYDLRSNLGIIPQDPTLFSGS----VRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREV 1128
L LR + ++ P LF S V Y + + EI ++ L+ L +
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV--ESALKDADLWDE 139
Query: 1129 IQEK--KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT----D 1182
I+ K K LD S GQ+Q + + R + + ++L++DE +D +
Sbjct: 140 IKHKIHKSALD---------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190
Query: 1183 SILQN-TIRREFANCTVITVAHRIATVMDCNMVLSMSD---GKLVEYDEPKKLL------ 1232
S++Q+ +R E V H+++ + D ++ G+LVE+ KK+
Sbjct: 191 SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDS 250
Query: 1233 RRQDSLFAQL 1242
R ++ + ++L
Sbjct: 251 RTREYVLSRL 260
|
Length = 261 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 62/151 (41%)
Query: 466 INLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLKMLPFGDL------- 513
++ EV+ E + G GAGKSTLLA + G LP + G L+ +L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 514 -----------------------TQIG-------------------ERGVN-LSGGQKQR 530
T+ R VN LSGG+ QR
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQR 134
Query: 531 IQLARALYQ-DRDI------YLLDDPFSALD 554
++LA + Q DI LLD+P ++LD
Sbjct: 135 VRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
|
Length = 248 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGER 519
+ L+++NLE+ E AI G GAGKSTLL ++ G + G++ G +
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---------GEILFNGVQ 67
Query: 520 GVNLSGGQKQRIQ 532
L G + ++++
Sbjct: 68 ITKLKGKELRKLR 80
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L+ ++L ++ E AI G G+GKSTLL ILG
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILG 51
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 37/255 (14%)
Query: 1005 EIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL-----VEP 1057
I +L + + ++GI+ E G + +VG +GSGK+ ++ L
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 1058 TGGKIIIDGLDITTI---GLYDLRSN-LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV 1113
G I+ DG D+ L +R N +G+I Q+P +L+PL Q + EV
Sbjct: 68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQ-LAEV 119
Query: 1114 TIPSQVLEKCQ--------LREV-IQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164
+ L + L V I E ++ LD+ + S GQRQ + + +
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANE 175
Query: 1165 RQILVLDEATASIDNATDS-ILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDG 1220
+L+ DE T ++D + IL ++ E ++ + H + V + V M G
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFADRVYVMQHG 234
Query: 1221 KLVEYDEPKKLLRRQ 1235
++VE + L
Sbjct: 235 EIVETGTTETLFAAP 249
|
Length = 534 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 62/215 (28%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLKML--------- 508
L ++ EV+ E + G GAGKSTLLA + G + G L+
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHR 74
Query: 509 ---------PF------------------GDLTQIGE---------RGVN-LSGGQKQRI 531
PF L + R N LSGG+ QR+
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134
Query: 532 QLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF 584
+LA + Q + LLD+P ++LD L +++ +H ++
Sbjct: 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194
Query: 585 -LPAFDSILLISGGEIIQAATYDHLL---VTSQEF 615
L L+ G+++ + + +L V +Q +
Sbjct: 195 TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229
|
Length = 248 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
L N++L+V+ E ++CGE GAGKSTL+ + G P
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56
|
Length = 506 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVT 579
G LS G KQ + LAR++ I LLD+P + LD T + + + + + S TV+L
Sbjct: 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSE 1409
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
H+V+ L L+I G + Q + LL + F+ ++A
Sbjct: 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVT 579
G LS G KQ + LAR++ I LLD+P + LD T + + + + A + TV+L
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSE 194
Query: 580 HQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFGEHVSSK 638
H+++ + L+I ++ Q + LL F+ + + + + + F SSK
Sbjct: 195 HRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAI-SPSDRL--KLFPRRNSSK 250
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI 493
L+NINL + P E AI G GAGKSTLL I
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCI 48
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 26/207 (12%)
Query: 1031 GHKIGVVGRTGSGKTTLISALFRLVEPT-GGKIIIDG--LDITTIGLYDLRSNLGIIPQD 1087
G +GV G G+G+T L+ ALF G + I+G +DI +R+ + ++P+D
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPED 344
Query: 1088 -------PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEK-KEGLDSL 1139
P L G L L F + + I + + + + K K L
Sbjct: 345 RKRHGIVPILGVGK-NITLSVLKSFCFK----MRIDAAAELQIIGSAIQRLKVKTASPFL 399
Query: 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NATDSI--LQNTIRREFANC 1196
+ S G +Q L +++L ++L+LDE T +D A I L N + +E
Sbjct: 400 PI---GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--GV 454
Query: 1197 TVITVAHRIATVMD-CNMVLSMSDGKL 1222
+I V+ +A V+ + VL + +GKL
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR 1078
++ G++ T G + + G G+GKT+L+ L L P G+++ G I +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYH 73
Query: 1079 SNL-------GIIPQDPTLFSGSVRYNLD---PLSQFTDQE-IWEVTIPSQVLEKCQLRE 1127
+L GI L + NL L D E +W + L + L
Sbjct: 74 QDLLYLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALW------EALAQVGLAG 121
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
D V S GQ++ + L R+ L R + +LDE +ID + L+
Sbjct: 122 F-------EDVPV----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170
Query: 1188 TIRREFAN--CTVIT 1200
+ + ++T
Sbjct: 171 LLAQHAEQGGMVILT 185
|
Length = 204 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD-AKTAKFLFTEYVMGALSKK 573
+I + ++LSGGQ+QR+ +ARAL + L+D+P LD + K + S+
Sbjct: 143 KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL 202
Query: 574 TVLLVTHQV 582
T+++V+H +
Sbjct: 203 TMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 46/232 (19%)
Query: 1024 ITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL---RSN 1080
++ G + +VG G+GK+TL++ + L+ P G I G + +L R+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE--GLDS 1138
L Q F+ V L L Q P + + + E E GLD
Sbjct: 74 L--SQQQTPPFAMPVFQYLT-LHQ-----------PDKT-RTEAVASALNEVAEALGLDD 118
Query: 1139 LVVQDGANWSMGQRQLIGLGRVVLR-------RRQILVLDEATASIDNATDSILQNTIRR 1191
+ + S G+ Q + L VVL+ Q+L+LDE S+D A + L +
Sbjct: 119 KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL-S 177
Query: 1192 EFANCTVITVAHRIATVM---DCN-------MVLSMSDGKLVEYDEPKKLLR 1233
E IA VM D N V + GKL+ ++L
Sbjct: 178 ELC-------QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
LR+++L ++P A+ G GAGKSTLL A+ G+L
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52
|
Length = 272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFG 511
P L N++ +V P E + I G GAGKSTLL+ I G+ P QG + FG
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP--QGYSNDLTLFG 322
|
Length = 490 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 38/145 (26%), Positives = 52/145 (35%), Gaps = 51/145 (35%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLL-----------------------------A 491
P ++ V E + G+ GAGK+TLL
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84
Query: 492 AILGELPRL----------------QGMDLKMLPFGDLTQIGERGV------NLSGGQKQ 529
A LG LP L G K +P L +G G LS GQK+
Sbjct: 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKK 144
Query: 530 RIQLARALYQDRDIYLLDDPFSALD 554
R+ LAR ++LLD+P++ LD
Sbjct: 145 RLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGD 512
P L+ ++L + P + A+ G G GKST+++ + GE+ L G+D++ L
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRW 74
Query: 513 L-TQIG 517
L +QIG
Sbjct: 75 LRSQIG 80
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
P L+ ++L++K EK A+ G G GKSTLL
Sbjct: 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
|
Length = 574 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-------AKFLFTEYVMGALSKKTV 575
LSGGQK+R+ +A + + I +LD+P + LD K K L EY M T+
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM------TI 198
Query: 576 LLVTHQVDFLPAF-DSILLISGGEII 600
+LV+H ++ + D I++++ G+
Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCE 224
|
Length = 287 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-TVLLVTHQ 581
LSGGQ+QR+ +ARAL + L+D+P S +D ++ + E ++ L + +++V+H
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITELKNEIAIVIVSHN 211
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHLLVTSQ 613
+ D + + GE+++ + + + + +
Sbjct: 212 PQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244
|
Length = 257 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG------- 1073
L + G + ++G +GSGK+TL+ L L+ TG K G I +G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI--TGDKSA--GSHIELLGRTVQREG 75
Query: 1074 -----LYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE 1127
+ R+N G I Q L + SV N+ + W + Q +
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCF--SWFTREQKQR 132
Query: 1128 VIQE-KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ 1186
+Q + G+ Q + S GQ+Q + + R ++++ ++++ DE AS+D + I+
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1187 NTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226
+T+R + TV+ H++ + C ++++ G V YD
Sbjct: 193 DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH-VFYD 234
|
Length = 262 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT----AKFLFTEYVMGALSKKTVLLV 578
LSGG++QR+ LARA D+ D+P LD +T A LF+ + T++LV
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS---LNREHGTTLILV 203
Query: 579 TH 580
TH
Sbjct: 204 TH 205
|
Length = 228 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-------LRSNLGIIPQ 1086
I +G +G GK+TL+ R+ + G + L +YD LR +G++ Q
Sbjct: 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108
Query: 1087 DPTLFSGSV-------------RYNLDPLSQFTDQE--IWEVTIPSQVLEKCQLREVIQE 1131
P F S+ + NLD L + + + IWE ++++ ++E
Sbjct: 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-----------EVKDKLKE 157
Query: 1132 KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191
K G S GQ+Q + + R + + +L++DE +++D + ++
Sbjct: 158 K-----------GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 1192 EFANCTVITVAHRI 1205
T+I V H +
Sbjct: 207 LKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 464 RNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
R+++ ++ P E I GE G+GKSTLL + G L G
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 25/94 (26%)
Query: 496 ELPRLQGMDLKMLPFGDLTQIGERGVN--LSGGQKQRIQLARALYQDRDIYLLDDPFSAL 553
E L G+D + L ER VN SGG+K+R ++ + L + + +LD+P S L
Sbjct: 125 EKAELLGLDEEFL---------ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 554 D-------AKTAKFLFTEYVMGALSKKTVLLVTH 580
D A+ L E + VL++TH
Sbjct: 176 DIDALKIVAEGINALREE-------GRGVLIITH 202
|
Length = 251 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 60/255 (23%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------------MDLKM 507
L +I L + P + + G GAGKSTL+ + GEL + G L+
Sbjct: 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEF 387
Query: 508 L-----PFGDLTQIGERGVN-----------------------LSGGQKQRIQLARALYQ 539
L P L ++ + + SGG+K R+ LA ++Q
Sbjct: 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447
Query: 540 DRDIYLLDDPFSALDAKTAKFLFTEYVM---GALSKKTVLLVTHQVDFLPA-FDSILLIS 595
++ LLD+P + LD + L TE ++ GAL ++V+H L + D + L+
Sbjct: 448 RPNLLLLDEPTNHLDLDMRQAL-TEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVH 501
Query: 596 GGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFGEHVS--SKEDENEVKKVEDEGHN 653
G++ +D L Q++ L + K+ + + + S + + K+ E E
Sbjct: 502 DGKV---EPFDGDLEDYQQW--LSDVQKQENQTDEAPKENNANSAQARKDQKRREAELRT 556
Query: 654 NTSPADQLIKKEERE 668
T P + I + E+E
Sbjct: 557 QTQPLRKEIARLEKE 571
|
Length = 638 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTH 580
LSGGQKQR+ +A L + + +LD+ S LD + L + V S+ T++ +TH
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITH 201
Query: 581 QVDFLPAFDSILLISGGEIIQAAT 604
+ D +++++ G + + T
Sbjct: 202 DLSEAMEADHVIVMNKGTVYKEGT 225
|
Length = 269 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLS 524
N++LEVK E F I G GAGK+TL I G L G ++ + + + + G +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKPGPDGR 360
Query: 525 GGQKQRIQLARALYQDRDIY 544
G K+ I + L+Q+ D+Y
Sbjct: 361 GRAKRYIGI---LHQEYDLY 377
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSAL-DAKTAKFLFTEYVMGALSKKTVLLVTH 580
LS GQKQ +++ L QD + LLD+P + + DA+T K E + K ++L+V H
Sbjct: 147 LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK--TAELLKSLAGKHSILVVEH 204
Query: 581 QVDFLPAF-DSILLISGGEIIQAATYDHL 608
+ F+ D + ++ G ++ + D +
Sbjct: 205 DMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQ +R+ +A L + ++ +LD+P + LD K K + + L K+ T +LVT
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY--KLHKEKGLTTVLVT 203
Query: 580 HQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQDL 618
H ++ + D I+++ G + T + E + +
Sbjct: 204 HSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
L I+LEV+P E +CGE GAGKSTL+ + G P
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 18/93 (19%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLS 524
++ ++ P E ++ GE G+GKST A+L L QG G++ G+R LS
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALL-RLVESQG--------GEIIFNGQRIDTLS 392
Query: 525 GGQKQRIQLARALYQDRDI-YLLDDPFSALDAK 556
G+ Q ++ RDI ++ DP+++LD +
Sbjct: 393 PGKLQALR--------RDIQFIFQDPYASLDPR 417
|
Length = 623 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 515 QIGERGVNLSGGQKQRIQLARALYQD---RDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571
++G+ LSGG+ QRI+LA+ L + R +Y+LD+P + L K L V+ L
Sbjct: 822 RLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL--EVLQRLV 879
Query: 572 KK--TVLLVTHQVDFLPAFDSILLI------SGGEIIQAAT 604
K TV+++ H +D + D I+ + GG ++ + T
Sbjct: 880 DKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTH 580
LSGG++QR+ +ARA+ I + D+P LD T + + TV++ TH
Sbjct: 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK-------TV 575
LSGGQ QRI +ARAL + +LD+ S LD + + V+ L +K
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLD------MVLQAVILELLRKLQQAFGTAY 204
Query: 576 LLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
L +TH + + +F + ++ G+I++ LL
Sbjct: 205 LFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L + L VK E A+ GE G+GKSTLLA + G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAG 58
|
Length = 228 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 50/220 (22%), Positives = 75/220 (34%), Gaps = 81/220 (36%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-------------------RLQ 501
NI+L V + AI G G GK+TLL I G++ RL
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 502 GMDLKM-------LPFGDLT-----------------------------QIGERGV---- 521
+ +M F D+ +G RG
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM 140
Query: 522 --NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------- 572
LSGG +R LARA+ + D+ + D+PF D T MG L K
Sbjct: 141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT---------MGVLVKLISELNS 191
Query: 573 ---KTVLLVTHQV-DFLPAFDSILLISGGEIIQAATYDHL 608
T ++V+H V + L D +++ +I+ + L
Sbjct: 192 ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1255 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.98 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.98 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.98 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.97 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.97 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.97 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.96 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.96 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.96 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.96 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.96 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.96 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.96 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.96 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.96 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.96 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.96 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.96 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.96 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.96 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.96 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.96 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.96 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.96 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.96 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.96 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.96 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.96 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.96 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.96 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.96 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.96 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.96 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.96 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.96 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.96 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.96 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.96 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.96 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.96 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.96 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.96 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.96 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.96 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.96 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.96 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.96 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.96 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.96 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.96 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-246 Score=2284.47 Aligned_cols=1196 Identities=42% Similarity=0.700 Sum_probs=1109.9
Q ss_pred CCCCCCCcCCh--hHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHH
Q 000845 47 DHVTPFDKAGL--LRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISC 124 (1255)
Q Consensus 47 ~~~~~e~~a~~--~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 124 (1255)
..++|.+.++. +|+++|||++|++++|+|++|+.+|+|+++++|+++.+.++|++.|+++.++. .++|+++++++++
T Consensus 120 ~~~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~-~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 120 VDPNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS-GKKPSLLRALLRT 198 (1381)
T ss_pred cCCCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc-cCCcHHHHHHHHH
Confidence 34556666666 99999999999999999999999999999999999999999999999987432 2678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 125 HWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLC 204 (1255)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 204 (1255)
||+.++..++++.+...+.+++|.+++.++.++++++.+.+.||+|++++|++.++.+++.++|+|...+.|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999866678899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000845 205 AAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGN 284 (1255)
Q Consensus 205 ~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~~ 284 (1255)
++||+|+|+++..++++.+.|+|+|+|++|++|+.+++.++|.+|.+|+|+++++++||..+|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 285 SPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILI 364 (1255)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1255)
.+++++++++|++.|+.+|+|+++++|+|++||+|||||||+.|.++|+++|++|++.+|+..++.+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcc
Q 000845 365 GAATLLTCY-FLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEH 443 (1255)
Q Consensus 365 ~~~~f~~~~-~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 443 (1255)
++++|++|+ ..++.+||+.+|+++++|++|+.|+..+|..++.+.++.||++|+++||..||.+.....+.+.. +.+.
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~-~~~~ 517 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDE-AGEN 517 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCC-CCCc
Confidence 999999999 67889999999999999999999999999999999999999999999999999877655432222 2566
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC---------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG--------------------- 502 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G--------------------- 502 (1255)
.|+++|++|+|+.+.+.|.|+||||+|++|+++||||++||||||||++|+||+++.+|
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngT 597 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGT 597 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCc
Confidence 89999999999986566799999999999999999999999999999999999999998
Q ss_pred --------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 000845 503 --------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556 (1255)
Q Consensus 503 --------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~ 556 (1255)
+|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|
T Consensus 598 vreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDah 677 (1381)
T KOG0054|consen 598 VRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAH 677 (1381)
T ss_pred HHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHh
Confidence 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhhhcCCCC-cccccC
Q 000845 557 TAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPE-TFGEHV 635 (1255)
Q Consensus 557 ~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 635 (1255)
|++|||++|+.+++++||+|+|||+++++++||+|++|+||+|.+.|+|+|+++....+.++........... ......
T Consensus 678 vg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 757 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLE 757 (1381)
T ss_pred hhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999988888887743322111110 000000
Q ss_pred C-Cccch---hhhcc---ccccCCCCCCCcchhhhHHHhhcCCCchhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 000845 636 S-SKEDE---NEVKK---VEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQS 708 (1255)
Q Consensus 636 ~-~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1255)
. ..+.. +.... .+....+......+..++|+++.|.++|++|++|+++.++++.+++.+++.++.+++.++.+
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~ 837 (1381)
T KOG0054|consen 758 SGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASN 837 (1381)
T ss_pred ccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00000 00011111222455667788899999999999999998888877777888899999999999
Q ss_pred HHHhhhcCCCC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchh
Q 000845 709 LWIATYIPSTS------ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRI 782 (1255)
Q Consensus 709 ~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~i 782 (1255)
+|+++|.+... .+..+|+++|.+++++..++..++++.+...+.+++++||++|+++++++|++|||+||+|||
T Consensus 838 ~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRI 917 (1381)
T KOG0054|consen 838 YWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRI 917 (1381)
T ss_pred HHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccch
Confidence 99996665421 356789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000845 783 LSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLA 862 (1255)
Q Consensus 783 l~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~ 862 (1255)
+|||++|++.+|..+|..+..++..++.++++++++++..|+++++++|+.+++++++++|.+++|+++|+++.++||++
T Consensus 918 LNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~ 997 (1381)
T KOG0054|consen 918 LNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIY 997 (1381)
T ss_pred hhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Q 000845 863 SHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTG 942 (1255)
Q Consensus 863 ~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 942 (1255)
+|++|++.|+.|||||+.+++|.+++.+++|.+.+++|.....+||++.|+++++++++.++++++++...+..++|.+|
T Consensus 998 sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vG 1077 (1381)
T KOG0054|consen 998 SHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVG 1077 (1381)
T ss_pred HhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887765557799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceee
Q 000845 943 MALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLR 1022 (1255)
Q Consensus 943 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~ 1022 (1255)
++++|++++++.++|+++..+++|+.|+|+||+.+|.++|+|++...+...||+.||.+|+|+|+|++++|+|+.|+|||
T Consensus 1078 Lslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk 1157 (1381)
T KOG0054|consen 1078 LSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLK 1157 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhc
Confidence 99999999999999999999999999999999999999998855555455588999999999999999999999999999
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccC
Q 000845 1023 GITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL 1102 (1255)
Q Consensus 1023 ~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~ 1102 (1255)
||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||||+
T Consensus 1158 ~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf 1237 (1381)
T KOG0054|consen 1158 GISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF 1237 (1381)
T ss_pred CceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHH
Q 000845 1103 SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182 (1255)
Q Consensus 1103 ~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te 1182 (1255)
++++|+|||+ ||++|+|+++|+++|+|||+.|.|+|.|||.||||++||||||||+++||+||||||++|++||
T Consensus 1238 ~e~sD~~IW~------ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1238 DEYSDDEIWE------ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCHHHHHH------HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHHHhh
Q 000845 1183 SILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHA 1250 (1255)
Q Consensus 1183 ~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~~~ 1250 (1255)
..||++||+.|++||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++.+....+
T Consensus 1312 ~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~ 1379 (1381)
T KOG0054|consen 1312 ALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSS 1379 (1381)
T ss_pred HHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998888876543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-196 Score=1946.34 Aligned_cols=1194 Identities=33% Similarity=0.585 Sum_probs=1062.1
Q ss_pred CCCCCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhhccCCCCChhHHHHHHH
Q 000845 44 DDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALIS 123 (1255)
Q Consensus 44 ~~~~~~~~e~~a~~~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 123 (1255)
..+++++||+++|+|||++|+|++|++++||+++|+.+|||+++++++++.+.++|++.|+++.+ +++++|++++++
T Consensus 221 ~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~ 297 (1622)
T PLN03130 221 PGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNN 297 (1622)
T ss_pred cccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999987752 345899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 124 CHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSL 203 (1255)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 203 (1255)
+||+.++.+++++++..++.+++|++++.+++++.+++. .+.+++++++++++.++.+++.++|.+...+++.++|+.+
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 376 (1622)
T PLN03130 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTL 376 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976432 3567778777777777777888888888999999999999
Q ss_pred HHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000845 204 CAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLG 283 (1255)
Q Consensus 204 ~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~ 283 (1255)
...||+|+++++....++.++|+++|+|++|++++.+.+..+|.+|..|+++++++++||..+|+++++|++++++++|+
T Consensus 377 ~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l 456 (1622)
T PLN03130 377 VAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPI 456 (1622)
T ss_pred HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 284 NSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPIL 363 (1255)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~ 363 (1255)
+.++++++++.++++++.+|+|++.++|++++||+||+|+||+.|.+++++.|++|++..++..+..++..+++..+|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1622)
T PLN03130 457 QTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVL 536 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888887888888
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcc
Q 000845 364 IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEH 443 (1255)
Q Consensus 364 ~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 443 (1255)
+++++|+.|.+.++.+|++.+|+++++|+.+..|+..+|..+..+.++++|++||++||+.+|....... +. .+...
T Consensus 537 v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~-~~~~~ 613 (1622)
T PLN03130 537 VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PL-EPGLP 613 (1622)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cc-cCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999987765322111 00 11234
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCC-C--------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQ-G-------------------- 502 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~-G-------------------- 502 (1255)
.|+++|++|+|+.++++++|+|+||++++|++++|+||+|||||||+++|+||+++.+ |
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfng 693 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNA 693 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCC
Confidence 6999999999986555689999999999999999999999999999999999999999 7
Q ss_pred ---------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCH
Q 000845 503 ---------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA 555 (1255)
Q Consensus 503 ---------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~ 555 (1255)
.|+..||+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+
T Consensus 694 TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 694 TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhhhcCCCCccc-cc
Q 000845 556 KTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFG-EH 634 (1255)
Q Consensus 556 ~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~~~~~~~~~~~~-~~ 634 (1255)
+++++|+++|+.+.+++||+|+|||++++++.||+|++|++|+++++|+|+++++..+.+.++........+..... +.
T Consensus 774 ~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~ 853 (1622)
T PLN03130 774 HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE 853 (1622)
T ss_pred HHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc
Confidence 99999999999888899999999999999999999999999999999999999988788887775432111000000 00
Q ss_pred C-CCccchh-hh---ccccccC--C-CCCCCcchhhhHHHhhcCCCchhhHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 000845 635 V-SSKEDEN-EV---KKVEDEG--H-NNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQIL 706 (1255)
Q Consensus 635 ~-~~~~~~~-~~---~~~~~~~--~-~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1255)
. ....... .. ....... . ..........++|+++.|.++++.|+.|+++.++++++.+++++.++..++.++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~ 933 (1622)
T PLN03130 854 EDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVS 933 (1622)
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 00 0000000 0 000011223456778889999999999999877665555556666777888889
Q ss_pred HHHHHhhhcCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhH
Q 000845 707 QSLWIATYIPST---SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRIL 783 (1255)
Q Consensus 707 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il 783 (1255)
.++|+++|.+.. ......|+++|++++++..++.+++.+++...+.+++.++|.+++++++++|++||+++|+|+++
T Consensus 934 ~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~Il 1013 (1622)
T PLN03130 934 SSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRII 1013 (1622)
T ss_pred HHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHH
Confidence 999999665431 22345678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000845 784 SRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLAS 863 (1255)
Q Consensus 784 ~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~ 863 (1255)
|||++|++.+|..++..+..++..++.+++.++++++.+|+.+++++|++++++.++.+|.+++|++++.+..+++|+++
T Consensus 1014 nR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~ 1093 (1622)
T PLN03130 1014 NRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYA 1093 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999998888888888888888899999999999999999999999
Q ss_pred HHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----ccH
Q 000845 864 HLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGH-----KGA 938 (1255)
Q Consensus 864 ~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~ 938 (1255)
++.|+++|+.|||+|+++++|.+.+.+..+...+..+.....++|+..++++++++++.+.+.+.+.. .+. ..+
T Consensus 1094 ~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~ 1172 (1622)
T PLN03130 1094 QFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFA 1172 (1622)
T ss_pred HHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999988877655544433322 111 126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCC
Q 000845 939 GYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAP 1018 (1255)
Q Consensus 939 ~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~ 1018 (1255)
+.+|++++|++.+...+.++.+.+..++..+.|++|+.+|.+.|+|++...+...+++.||..|.|+|+||+|+|+++.+
T Consensus 1173 ~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130 1173 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence 78899999999999999999999999999999999999999988876543233345567999999999999999987777
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhh
Q 000845 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN 1098 (1255)
Q Consensus 1019 ~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~N 1098 (1255)
+||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+|
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCC
Q 000845 1099 LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178 (1255)
Q Consensus 1099 l~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD 1178 (1255)
|||+++++|+|+|+ ||++++++++|.++|+||||+|+|+|.||||||||||||||||||+|+|||||||||+||
T Consensus 1333 Ld~~~~~tdeei~~------Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1333 LDPFNEHNDADLWE------SLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred hCcCCCCCHHHHHH------HHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 99999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHHHhhh
Q 000845 1179 NATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAE 1251 (1255)
Q Consensus 1179 ~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~~~~ 1251 (1255)
.+||+.||++|++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|..+.
T Consensus 1407 ~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~ 1479 (1622)
T PLN03130 1407 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANA 1479 (1622)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhh
Confidence 9999999999999999999999999999999999999999999999999999999878999999999886543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-192 Score=1915.69 Aligned_cols=1196 Identities=33% Similarity=0.566 Sum_probs=1059.2
Q ss_pred CCCCCCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhhccCCCCChhHHHHHH
Q 000845 43 DDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALI 122 (1255)
Q Consensus 43 ~~~~~~~~~e~~a~~~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 122 (1255)
.+.++.++||+++|+|||++|+|++|++++|++++|+.+|||+|+++++++.++++|++.|+++.. .++++|+++++
T Consensus 220 ~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~ 296 (1495)
T PLN03232 220 LRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALN 296 (1495)
T ss_pred ccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHH
Confidence 344567899999999999999999999999999999999999999999999999999999987652 34689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 123 SCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSS 202 (1255)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 202 (1255)
++|++.++.+++++++..++.+++|++++++++++++++. .+.++.++++++++.++.+++.++|.+...+++.++|..
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 297 NSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976542 356888888888888899999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000845 203 LCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVL 282 (1255)
Q Consensus 203 l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~ 282 (1255)
+...+|+|.++++....++.++|+++|+|++|++++.+....+|.+|..|++++++++++|+.+|++++++++++++++|
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~p 455 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIP 455 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 283 GNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPI 362 (1255)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~ 362 (1255)
++.++++++.+.++++++.+|+|.+.++|++++||+||+|+||+.+.+++++.|++|++..++..+..++..+++...|.
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 535 (1495)
T PLN03232 456 LQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPV 535 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887777777888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCc
Q 000845 363 LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELE 442 (1255)
Q Consensus 363 ~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~ 442 (1255)
++.+++|+.|.+.++.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++||+.++...... .+ ..+..
T Consensus 536 ~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~-~~~~~ 612 (1495)
T PLN03232 536 VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PP-LQPGA 612 (1495)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CC-cCCCC
Confidence 8888999999998999999999999999999999999999999999999999999999998765322111 01 01123
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------------------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------- 502 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------------------- 502 (1255)
..|+++|++|+|+.++++|+|+|+||++++||+++|+||+|||||||+++|+||++|.+|
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 479999999999865556899999999999999999999999999999999999999987
Q ss_pred ----------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCC
Q 000845 503 ----------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554 (1255)
Q Consensus 503 ----------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD 554 (1255)
.|+..||+||+|+|||+|.+|||||||||+||||+|++||||||||||||||
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 4788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhhhcCCCCcccc-
Q 000845 555 AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPETFGE- 633 (1255)
Q Consensus 555 ~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~~~~~~~~~~~~~- 633 (1255)
++++++|+++|+.+.+++||+|+|||+++.++.||+|++|++|+++++|+|+|+++..+.+.++..............+
T Consensus 773 ~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~ 852 (1495)
T PLN03232 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTN 852 (1495)
T ss_pred HHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccc
Confidence 9999999999998888999999999999999999999999999999999999999888888887754332111000000
Q ss_pred cCCCc--cchhhhc--cccccCCC-CCCCcchhhhHHHhhcCCCchhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 000845 634 HVSSK--EDENEVK--KVEDEGHN-NTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQS 708 (1255)
Q Consensus 634 ~~~~~--~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1255)
..... ....+.. ........ .........++|+++.|.++++.|++|+++.++++++.+++++.++..++.++.+
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1495)
T PLN03232 853 DENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSS 932 (1495)
T ss_pred ccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000000 00000000 0001112456677888999999999999987766655555666667778888899
Q ss_pred HHHhhhcCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHH
Q 000845 709 LWIATYIPST---SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSR 785 (1255)
Q Consensus 709 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r 785 (1255)
+|+++|.+.. .....+|+++|++++++..++.+++.+++...+.+++.++|.+++++++++|++||+++|+|+++||
T Consensus 933 ~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr 1012 (1495)
T PLN03232 933 TWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINR 1012 (1495)
T ss_pred HHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHH
Confidence 9999655432 2234678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000845 786 VSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHL 865 (1255)
Q Consensus 786 ~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~ 865 (1255)
|++|++.+|..++..+..++..++.+++.++++++.+|...++++|+.++++.++.+|.+++|++++.+..+++|+++++
T Consensus 1013 ~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~ 1092 (1495)
T PLN03232 1013 FSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQF 1092 (1495)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 99999999999999999999999999999888888888777778888888888888999999999999999999999999
Q ss_pred HHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----cHHH
Q 000845 866 AETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHK-----GAGY 940 (1255)
Q Consensus 866 ~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 940 (1255)
.|+++|+.|||+|+.+++|.+++.+..+...+..+.....++|+..+++.++.+++.+.+.+.+.. .+.. .++.
T Consensus 1093 ~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~ 1171 (1495)
T PLN03232 1093 GEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFAST 1171 (1495)
T ss_pred HHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHH
Confidence 999999999999999999999999999999999998888999999998877765544443333321 2221 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCce
Q 000845 941 TGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLV 1020 (1255)
Q Consensus 941 ~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~v 1020 (1255)
+|++++|+..+...+.++++.+..++..+.|++|+.++.+.|+|++...+...+++.||..|.|+|+||+|+|+++.++|
T Consensus 1172 ~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v 1251 (1495)
T PLN03232 1172 MGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV 1251 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 88899999999999999999999999999999999999998877543222233456799999999999999998777789
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcc
Q 000845 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD 1100 (1255)
Q Consensus 1021 L~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~ 1100 (1255)
|+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+||||+|||
T Consensus 1252 L~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~ 1331 (1495)
T PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID 1331 (1495)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHH
Q 000845 1101 PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180 (1255)
Q Consensus 1101 ~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~ 1180 (1255)
|+++++|+|+|+ |++++++++++.++|+||||.++|+|.||||||||||||||||+|+|+|||||||||+||++
T Consensus 1332 ~~~~~sdeei~~------al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~ 1405 (1495)
T PLN03232 1332 PFSEHNDADLWE------ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405 (1495)
T ss_pred CCCCCCHHHHHH------HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 998999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHHHhhhc
Q 000845 1181 TDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAEK 1252 (1255)
Q Consensus 1181 te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~~~~~ 1252 (1255)
||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.|++|++++|..+..
T Consensus 1406 Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~ 1477 (1495)
T PLN03232 1406 TDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQ 1477 (1495)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhH
Confidence 999999999999999999999999999999999999999999999999999998778999999998865443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-190 Score=1898.68 Aligned_cols=1190 Identities=34% Similarity=0.583 Sum_probs=1054.9
Q ss_pred CCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhhcc------------------
Q 000845 48 HVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQK------------------ 109 (1255)
Q Consensus 48 ~~~~e~~a~~~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~------------------ 109 (1255)
.++||+++|++||++|||++|++++||+++|+.+|||+++++++++.+.++|++.|+++.++
T Consensus 200 ~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1522)
T TIGR00957 200 NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKP 279 (1522)
T ss_pred CCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999876311
Q ss_pred --------------------CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHH
Q 000845 110 --------------------RPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYS 169 (1255)
Q Consensus 110 --------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~ 169 (1255)
++.++++|+++++++||+.++.+++++++..++.+++|++++.+++++.++....+.||+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~ 359 (1522)
T TIGR00957 280 KGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYF 359 (1522)
T ss_pred cccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHH
Confidence 012347899999999999999999999999999999999999999999766444557899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 170 LAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIW 249 (1255)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~ 249 (1255)
+++++++++++.+++.++|.|...+++.++|+++...||+|+|+++....++.++|+++|+|++|++++..+..++|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~ 439 (1522)
T TIGR00957 360 YTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHH
Q 000845 250 STSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFK 329 (1255)
Q Consensus 250 ~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~ 329 (1255)
..|++++++++++|..+||++++|++++++++|++.++++.+.++++++++.+|+|++.++|++++||+||+|+||+.|.
T Consensus 440 ~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~ 519 (1522)
T TIGR00957 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFL 519 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 330 NVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFL--GIPLNPSNVFTFLATLRILQEPIRLLPDVFGA 407 (1255)
Q Consensus 330 ~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~ 407 (1255)
+++++.|++|++..++..++..+..+.++.+|.++.+++|+.|.+. ++.++++.+|+++++|++++.|+..+|..+..
T Consensus 520 ~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~ 599 (1522)
T TIGR00957 520 DKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISS 599 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887778888999999999988776 46799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHH
Q 000845 408 FIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKS 487 (1255)
Q Consensus 408 ~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKS 487 (1255)
+.++++|++||++||+.++.++...............|+++|++|+|+.+ ++++|+|+||++++|++++|+||+|||||
T Consensus 600 ~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKS 678 (1522)
T TIGR00957 600 IVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKS 678 (1522)
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999988765332111111000012379999999999753 34799999999999999999999999999
Q ss_pred HHHHHHhccCCCCCC-----------------------------------------------cccCCCCCCCccccccCC
Q 000845 488 TLLAAILGELPRLQG-----------------------------------------------MDLKMLPFGDLTQIGERG 520 (1255)
Q Consensus 488 TLL~~llGe~~~~~G-----------------------------------------------~Di~~lp~gd~T~iGe~G 520 (1255)
||+++|+|+++|.+| .|+..+|+||+|.+|++|
T Consensus 679 TLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 679 SLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred HHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 999999999999988 356789999999999999
Q ss_pred CcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHH--hhhcCCcEEEEEccCCCccccCCEEEEEeCCE
Q 000845 521 VNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSKKTVLLVTHQVDFLPAFDSILLISGGE 598 (1255)
Q Consensus 521 ~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i--~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 598 (1255)
.+|||||||||+||||+|++|+||||||||||||+++++++++.++ .++++++|+|+|||++++++.||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 9999999999999999999999999999999999999999999988 45678999999999999999999999999999
Q ss_pred EEEecChhHHhhcchHHHHHHHHhhhcCCC---Ccc------cccCCC----c--c----chhhh-------ccc-cc--
Q 000845 599 IIQAATYDHLLVTSQEFQDLVNAHKETMGP---ETF------GEHVSS----K--E----DENEV-------KKV-ED-- 649 (1255)
Q Consensus 599 i~~~G~~~el~~~~~~~~~l~~~~~~~~~~---~~~------~~~~~~----~--~----~~~~~-------~~~-~~-- 649 (1255)
++++|+++++....+.+.++.......... .+. .+.... + . ..++. ... ..
T Consensus 839 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1522)
T TIGR00957 839 ISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQS 918 (1522)
T ss_pred EEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence 999999999988777777776533211100 000 000000 0 0 00000 000 00
Q ss_pred -----c-C-C--CCCCCcchhhhHHHhhcCCCchhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--
Q 000845 650 -----E-G-H--NNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPST-- 718 (1255)
Q Consensus 650 -----~-~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 718 (1255)
. . . +......+..++|+++.|.++++.|+.|+++.+.+ .+++++++.++..++..+.++|+++|.+..
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~ 997 (1522)
T TIGR00957 919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDPMV 997 (1522)
T ss_pred ccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0 0 0 00001123345667778999999999999987643 333445555667778889999999665431
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhh
Q 000845 719 ---SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDL 795 (1255)
Q Consensus 719 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~ 795 (1255)
......++.+|++++++..++.++..++..+.+.++++++|++++++++++|++||+++|+|+++|||++|++.+|.
T Consensus 998 ~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~ 1077 (1522)
T TIGR00957 998 NGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDS 1077 (1522)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHH
Confidence 12235677789999998888888888888999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHH
Q 000845 796 DLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTI 875 (1255)
Q Consensus 796 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tI 875 (1255)
.++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|++++.+.++++|+++++.|+++|+.||
T Consensus 1078 ~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tI 1157 (1522)
T TIGR00957 1078 MIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVI 1157 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHH
Confidence 99999999999999999999999999999988888988889999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH
Q 000845 876 RAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFL 955 (1255)
Q Consensus 876 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l 955 (1255)
|+|+++++|.+++.+..+...+..+.....++|+..++++++.+++.+++.+.+ ...+.+++|.+|++++|+..+...+
T Consensus 1158 raf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~~l~~~~~~~~~l 1236 (1522)
T TIGR00957 1158 RAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYL 1236 (1522)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987765544443332 2246789999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEE
Q 000845 956 VYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIG 1035 (1255)
Q Consensus 956 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~va 1035 (1255)
.+++..+..++..+.|++|+.+|.+.++|.+...+...+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||
T Consensus 1237 ~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gekia 1316 (1522)
T TIGR00957 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVG 1316 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEE
Confidence 99999999999999999999999988777543222334556799999999999999998776789999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccC
Q 000845 1036 VVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTI 1115 (1255)
Q Consensus 1036 IvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~ 1115 (1255)
||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+
T Consensus 1317 IVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~--- 1393 (1522)
T TIGR00957 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWW--- 1393 (1522)
T ss_pred EECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCC
Q 000845 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195 (1255)
Q Consensus 1116 ~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~ 1195 (1255)
|+++|+++++|.++|+||||.|+|+|.+|||||||||||||||||+|+|||||||||+||++||+.||++|++.+++
T Consensus 1394 ---al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~ 1470 (1522)
T TIGR00957 1394 ---ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED 1470 (1522)
T ss_pred ---HHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1196 CTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1196 ~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
||||+||||++|+.+||||+|||+|+|+|+|+|+||+++ +|.|++|+++.|
T Consensus 1471 ~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1471 CTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDAG 1521 (1522)
T ss_pred CEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHcC
Confidence 999999999999999999999999999999999999987 799999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-187 Score=1862.50 Aligned_cols=1187 Identities=27% Similarity=0.469 Sum_probs=1040.4
Q ss_pred CCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhhccCCCCChhHHHHHHHHHHH
Q 000845 48 HVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWK 127 (1255)
Q Consensus 48 ~~~~e~~a~~~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 127 (1255)
..+||+++|+|||++|||++|++++||+++|+.+|||+|+++++++.++++|++.|+++..+ +.++++|+++++++|++
T Consensus 2 ~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 2 QRSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999876432 24568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 128 SILFSGFFALIKVISISAGPLFLKAFISAAEGEII-FKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAA 206 (1255)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 206 (1255)
.++..++++++..++.+++|+++++++++++.++. ..+.+|++++++++++++.+++.+++.|...++++++|+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999964322 23568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000845 207 ISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSP 286 (1255)
Q Consensus 207 iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~~~~ 286 (1255)
||+|+|+++....++.++|+++|+|++|+++|.+++..+|.+|.+|+++++++++||+++||++++|++++++++|++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 287 LAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGA 366 (1255)
Q Consensus 287 ~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1255)
+++++.++++++++.+|+|++.++|+|++||+||+||||+.|.+++++.|++|++.+++..++.++..++++..|.++++
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888889999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcceE
Q 000845 367 ATLLTCYFLGIPLNPSNVFTFLATLRILQEPIR-LLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSI 445 (1255)
Q Consensus 367 ~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~-~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~i 445 (1255)
++|++|.+.++ ++++.+||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.+.... . .....|
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~----~~~~~i 393 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--N----LTTTEV 393 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--c----CCCCce
Confidence 99999987754 789999999999999999985 799999999999999999999999887643211 0 123469
Q ss_pred EEEeeEEEecCCC-------------------------------CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHh
Q 000845 446 FIKSADLSWEADL-------------------------------LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL 494 (1255)
Q Consensus 446 ~~~~~~f~w~~~~-------------------------------~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~ll 494 (1255)
+++|++|+|+... .+++|+|+||+|++|++++|+|||||||||||++|+
T Consensus 394 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~ 473 (1490)
T TIGR01271 394 EMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473 (1490)
T ss_pred EEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999996310 146899999999999999999999999999999999
Q ss_pred ccCCCCCC-----------------------------------------------cccCCCCCCCccccccCCCcCChHH
Q 000845 495 GELPRLQG-----------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQ 527 (1255)
Q Consensus 495 Ge~~~~~G-----------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQ 527 (1255)
|+++|.+| .|+..+|+||.|.||++|.+|||||
T Consensus 474 G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGq 553 (1490)
T TIGR01271 474 GELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQ 553 (1490)
T ss_pred CCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHH
Confidence 99999988 3677899999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhH
Q 000845 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDH 607 (1255)
Q Consensus 528 kqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~e 607 (1255)
||||+||||+|++|+||||||||||||++++++++++|+.++++++|+|+|||+++.++.||+|++|++|++++.|++++
T Consensus 554 kqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 554 RARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHhhh----------------------c-CC-----CCc-------cccc--C---------------
Q 000845 608 LLVTSQEFQDLVNAHKE----------------------T-MG-----PET-------FGEH--V--------------- 635 (1255)
Q Consensus 608 l~~~~~~~~~l~~~~~~----------------------~-~~-----~~~-------~~~~--~--------------- 635 (1255)
+......+.+.+..... . .. ++. +... .
T Consensus 634 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1490)
T TIGR01271 634 LQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASAR 713 (1490)
T ss_pred HHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 98765555544421000 0 00 000 0000 0
Q ss_pred ---------------CCccchhhhc--------c---c-----------------------------c---ccC------
Q 000845 636 ---------------SSKEDENEVK--------K---V-----------------------------E---DEG------ 651 (1255)
Q Consensus 636 ---------------~~~~~~~~~~--------~---~-----------------------------~---~~~------ 651 (1255)
+.+....+.. . . . ...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1490)
T TIGR01271 714 KFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQ 793 (1490)
T ss_pred ccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence 0000000000 0 0 0 000
Q ss_pred ----------------C-------C-CCC-------------CcchhhhHHHhhcCCCchhhHHHHHhcccchHHHHHHH
Q 000845 652 ----------------H-------N-NTS-------------PADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLST 694 (1255)
Q Consensus 652 ----------------~-------~-~~~-------------~~~~~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~ 694 (1255)
. . ... ......++|++..|.++|++|++|+++.+++.++.+++
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~ 873 (1490)
T TIGR01271 794 TSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHH
Confidence 0 0 000 00112344667789999999999999877666555556
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC---------C-C-----------C-ChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 695 FAYLIFLVAQILQSLWIATYIPS---------T-S-----------I-SRLKL-VIVYSGIGIGMMFLLLTRSFLVVYLG 751 (1255)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~~~~---------~-~-----------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1255)
++.++..++..+.++|+.+|... . . . ...+| +++|++++++..++.+++.+++...+
T Consensus 874 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1490)
T TIGR01271 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTL 953 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788999999999844321 0 0 0 11122 44555555556677788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 752 LEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVP 831 (1255)
Q Consensus 752 ~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 831 (1255)
.+++.++|.+++++++++|++||+++|+|+++|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|
T Consensus 954 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~ 1033 (1490)
T TIGR01271 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIP 1033 (1490)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 832 MIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQ 911 (1255)
Q Consensus 832 ~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 911 (1255)
+++++++++++|.+.+|++++.+..+++|+++++.|+++|+.|||+|+++++|.+++.+..+.+.+.++.....++|+..
T Consensus 1034 l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1113 (1490)
T TIGR01271 1034 VAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCccccc-
Q 000845 912 RLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQ- 990 (1255)
Q Consensus 912 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~- 990 (1255)
+++++..+++..+.++.+. ....++|.+|++++|++.+...+.+++..+..++..+.|++|+.+|.+.|+|++...+
T Consensus 1114 ~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~ 1191 (1490)
T TIGR01271 1114 RIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGG 1191 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 9998776544433333222 1235678899999999999999999999999999999999999999988776542111
Q ss_pred -------------CCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 000845 991 -------------KNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057 (1255)
Q Consensus 991 -------------~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~ 1057 (1255)
...+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~- 1270 (1490)
T TIGR01271 1192 GGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS- 1270 (1490)
T ss_pred ccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-
Confidence 112345799999999999999998877889999999999999999999999999999999999998
Q ss_pred CCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCcc
Q 000845 1058 TGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137 (1255)
Q Consensus 1058 ~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld 1137 (1255)
++|+|.|||+||++++++++|++|+||||||+||+||||+||||+++++|+++|+ ||+++++++++.++|+|||
T Consensus 1271 ~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~------aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1271 TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK------VAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH------HHHHCCCHHHHHhCccccc
Confidence 7999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEE
Q 000845 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSM 1217 (1255)
Q Consensus 1138 t~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1217 (1255)
|+|+|+|.||||||||||||||||||+|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+||||+||
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEcChhHHhhcCChHHHHHHHHHHHhhhc
Q 000845 1218 SDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAEK 1252 (1255)
Q Consensus 1218 ~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~~~~~ 1252 (1255)
++|+|+|+|+|++|+++ +|.|++|++++++.+..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~~~ 1458 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLKLF 1458 (1490)
T ss_pred ECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhccc
Confidence 99999999999999974 89999999998766543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-180 Score=1794.99 Aligned_cols=1199 Identities=30% Similarity=0.471 Sum_probs=1036.3
Q ss_pred CCCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCcCCCccCcHHHHHHHHHHHHHhhh------------------
Q 000845 46 GDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDVPQLRLADRATTCYSLFIEELNDWN------------------ 107 (1255)
Q Consensus 46 ~~~~~~e~~a~~~s~~~f~W~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~------------------ 107 (1255)
...+.||+++|||.++++.|++|.+..+.|+.|+.+|||+...+.++.+...++.+..++..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1560)
T PTZ00243 56 PYTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTL 135 (1560)
T ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeec
Confidence 36678999999999999999999999999999999999999999998777666655433200
Q ss_pred --------------c-----------------------------------------------------------------
Q 000845 108 --------------Q----------------------------------------------------------------- 108 (1255)
Q Consensus 108 --------------~----------------------------------------------------------------- 108 (1255)
+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (1560)
T PTZ00243 136 DASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLS 215 (1560)
T ss_pred cccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeec
Confidence 0
Q ss_pred ----------cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Q 000845 109 ----------KRPSAHPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVK 178 (1255)
Q Consensus 109 ----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1255)
.+.++..+|+++++++||+.++.+++++++..++.+++|++++.+++++++++.....++++++++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~ 295 (1560)
T PTZ00243 216 STGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQ 295 (1560)
T ss_pred ccccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Confidence 0113456999999999999999999999999999999999999999999766544456888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--cCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000845 179 CVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKM--MHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLC 256 (1255)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K~l~l~~~~~~--~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~ 256 (1255)
++.+++.++|.|...+.+.++|++|...||+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|++++
T Consensus 296 ~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li 375 (1560)
T PTZ00243 296 LIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLL 375 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876654 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHH
Q 000845 257 IAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLR 336 (1255)
Q Consensus 257 v~~~lL~~~lG~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R 336 (1255)
+++++||.++||++++|++++++++|++.++++++.++++++++.+|+|++.++|++++||+||+||||+.|.++|++.|
T Consensus 376 ~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R 455 (1560)
T PTZ00243 376 LSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKR 455 (1560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 337 SEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLD 416 (1255)
Q Consensus 337 ~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~ 416 (1255)
++|++.+++..+..++..++++++|.++.+++|++|++.+++||++.+||++++|++++.|+.++|..++.+.++++|++
T Consensus 456 ~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~ 535 (1560)
T PTZ00243 456 ARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIK 535 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcch----h------------c-------------cc----------------------------ccc
Q 000845 417 RIANFLEAPELQNSDM----Q------------Q-------------VC----------------------------SRA 439 (1255)
Q Consensus 417 Ri~~fL~~~e~~~~~~----~------------~-------------~~----------------------------~~~ 439 (1255)
||++||+.+|...... + . .+ ...
T Consensus 536 RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (1560)
T PTZ00243 536 RISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKR 615 (1560)
T ss_pred HHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 9999998876311000 0 0 00 000
Q ss_pred cCcceEEEEeeEEEecCC-------------------------------------CCCCccccceeeeeCCcEEEEEccC
Q 000845 440 ELEHSIFIKSADLSWEAD-------------------------------------LLNPTLRNINLEVKPAEKFAICGEV 482 (1255)
Q Consensus 440 ~~~~~i~~~~~~f~w~~~-------------------------------------~~~~~L~~inl~i~~G~l~~IvG~~ 482 (1255)
.....+.++|++|+|+.. .++++|+|+||+|++|++++|+|||
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~n 695 (1560)
T PTZ00243 616 HPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGAT 695 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCC
Confidence 011246677777765421 1246899999999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCCC-----------------------------------------------cccCCCCCCCccc
Q 000845 483 GAGKSTLLAAILGELPRLQG-----------------------------------------------MDLKMLPFGDLTQ 515 (1255)
Q Consensus 483 GsGKSTLL~~llGe~~~~~G-----------------------------------------------~Di~~lp~gd~T~ 515 (1255)
||||||||++|+|+++|.+| .|++.+|+|++|.
T Consensus 696 GsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~ 775 (1560)
T PTZ00243 696 GSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETE 775 (1560)
T ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHH
Confidence 99999999999999999888 3567789999999
Q ss_pred cccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEe
Q 000845 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLIS 595 (1255)
Q Consensus 516 iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 595 (1255)
+|++|.+|||||||||+||||+|++|+||||||||||||++++++++++++.+.++|+|+|+|||+++.++.||+|++|+
T Consensus 776 i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~ 855 (1560)
T PTZ00243 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855 (1560)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999877778999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcchHHHHHHHHhhhcCCCCc--cc-ccCCCcc-c------hhh-hccccc-cC---CCCCCCcch
Q 000845 596 GGEIIQAATYDHLLVTSQEFQDLVNAHKETMGPET--FG-EHVSSKE-D------ENE-VKKVED-EG---HNNTSPADQ 660 (1255)
Q Consensus 596 ~G~i~~~G~~~el~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~-~------~~~-~~~~~~-~~---~~~~~~~~~ 660 (1255)
+|++++.|+++++.+. +.+.++........+... .. +....+. . ... ...... .. ........+
T Consensus 856 ~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 856 DGRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred CCEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 9999999999999864 345555433211110000 00 0000000 0 000 000000 00 000111223
Q ss_pred hhhHHHhhcCCCchhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCChhHHHHHHHHHHHHHHHH
Q 000845 661 LIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS-TSISRLKLVIVYSGIGIGMMFL 739 (1255)
Q Consensus 661 ~~~~~~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 739 (1255)
..++|++..|.++|+.|+.|++..++..+++..+++.++..++..+.++|+++|... ...+...|+.+|+++.++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 455667778999999999999987766555555555566677888899999955432 2233456778888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000845 740 LLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLG 819 (1255)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~ 819 (1255)
.+++.+.....+.++++++|.+++++++++|+.|||++++|+++|||++|++.+|..++..+..++..++.+++.+++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 000845 820 ALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSF 899 (1255)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~ 899 (1255)
+.+|+++++++|+.++++.+.++|.+..|++++.....++|+++++.|++.|+.|||+|+.++.+.+++.+..+.+.+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000845 900 FHSFTAREWLIQRLETLSAIVLATSALCTT---LLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLN 976 (1255)
Q Consensus 900 ~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~ 976 (1255)
+.....++|+..+++++..++..+++++.+ ....+..++|.++++++|+..+...+.+++..+..++..+.|++|+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765544433322 22234567899999999999999999999999999999999999999
Q ss_pred HHhcC-CCCCcccc-----------------------cCCCCC---CCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEe
Q 000845 977 QYMRI-PSEAPELV-----------------------QKNSPA---PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFE 1029 (1255)
Q Consensus 977 ~~~~~-~~e~~~~~-----------------------~~~~~~---~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~ 1029 (1255)
+|.+. |+|+.... +...++ +.||..|.|+|+||+|+|+++.++||+||||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 99863 33321000 001111 2355678999999999998877789999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHH
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109 (1255)
Q Consensus 1030 ~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~e 1109 (1255)
||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC-CCeEEEecCCCCCCHHHHHHHHHH
Q 000845 1110 IWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR-RQILVLDEATASIDNATDSILQNT 1188 (1255)
Q Consensus 1110 i~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~-~~ILiLDE~TS~LD~~te~~i~~~ 1188 (1255)
+|+ |+++|+++++|.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||++||+.||++
T Consensus 1415 I~~------Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1415 VWA------ALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred HHH------HHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHHHhhh
Q 000845 1189 IRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWSHAE 1251 (1255)
Q Consensus 1189 l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~~~~ 1251 (1255)
|++.+++||||+||||++|+.+||+|+|||+|+|+|+|+|+||+++++|.|++|+++.++.+.
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~~ 1551 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEA 1551 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhHH
Confidence 999999999999999999999999999999999999999999998778999999999876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-150 Score=1381.12 Aligned_cols=1089 Identities=21% Similarity=0.255 Sum_probs=833.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 132 SGFFALIKVISISAGPLFLKAFISAAEGEII-----F-KYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCA 205 (1255)
Q Consensus 132 ~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 205 (1255)
+.+..++..+.....-++..++.+.+..... . ...++.+...-++..+...+...+|.+.+.|...++|..+..
T Consensus 33 G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~ 112 (1228)
T KOG0055|consen 33 GSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLK 112 (1228)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444566777776654331 1 112222222222222223345678999999999999999999
Q ss_pred HHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 000845 206 AISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-----WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMIL 279 (1255)
Q Consensus 206 ~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-----~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~~ 279 (1255)
.+.||-..+.. ...+|++++.|+.|+++|.+++. .+|.+-....-++++ +..+| .+++++.+.++
T Consensus 113 ~iLrQdi~~fD----~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~-----F~~~W~Ltlv~l~~~Pl 183 (1228)
T KOG0055|consen 113 AILRQDIGWFD----TNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG-----FYYGWKLTLVMLSFIPL 183 (1228)
T ss_pred HHHhCccceee----cccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 99998887653 44569999999999999998753 333333322222333 33366 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000845 280 TVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVL--F 357 (1255)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~--~ 357 (1255)
++.....+++.+.+...+.+++..+.-++++|++++||+|-.|+-|+...++..+.=+.-.+...+..+..++...+ +
T Consensus 184 i~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~ 263 (1228)
T KOG0055|consen 184 IAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFF 263 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998874444444333333433333222 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcchhccc
Q 000845 358 WSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE-LQNSDMQQVC 436 (1255)
Q Consensus 358 ~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e-~~~~~~~~~~ 436 (1255)
+.-......+|||...+..+..+++++|+++...-+-...|++..+.+..+.+|++|..+|.+.++... ++........
T Consensus 264 ~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~ 343 (1228)
T KOG0055|consen 264 LLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRV 343 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCc
Confidence 222334566778877777788999999999966666677888888899999999999999999998743 3332211111
Q ss_pred ccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------------
Q 000845 437 SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------- 502 (1255)
Q Consensus 437 ~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------------- 502 (1255)
. ....+.|+|+|++|+||.+++.++|+|+||+||+|+.+++|||+||||||++++|.|+|+|.+|
T Consensus 344 ~-~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 344 L-SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL 422 (1228)
T ss_pred c-cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence 1 1256889999999999999989999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHH
Q 000845 503 -----------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLAR 535 (1255)
Q Consensus 503 -----------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLAR 535 (1255)
..+..||+|++|.+||+|..|||||||||||||
T Consensus 423 ~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 246789999999999999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHH
Q 000845 536 ALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEF 615 (1255)
Q Consensus 536 Aly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~ 615 (1255)
||.++|+||||||||||||++++ ++++++++...+|||+|+||||++++++||+|++|++|+|+|.|+|+||+...+.|
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se-~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y 581 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESE-RVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIY 581 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHH-HHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchH
Confidence 99999999999999999999996 57799999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHhhhcCCCCcccccCCCccchhhhc-----ccc-ccCCCCCCCcc-hhhhHHH------hhcCCCchhhHHHHHh
Q 000845 616 QDLVNAHKETMGPETFGEHVSSKEDENEVK-----KVE-DEGHNNTSPAD-QLIKKEE------RETGDTGLKPYIDYLS 682 (1255)
Q Consensus 616 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~-~~~~~~~------~~~g~~~~~~~~~y~~ 682 (1255)
.++++.+.....++..++..+.. .....+ ... ........... ...++|+ .+....++....++.+
T Consensus 582 ~~lv~~Q~~~~~~~~~~~~~~~~-~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~ 660 (1228)
T KOG0055|consen 582 SSLVRLQELEKAAEDEEEEESLK-EERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNK 660 (1228)
T ss_pred HHHHHHHhhhhhhhccccccchh-hhhhhccccccccccccCCccccccccccccccccccccccccccccHHHHHHhcc
Confidence 99997765433221100000000 000000 000 00000000000 0000000 0001222333333333
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 683 HKKGFLYFTLSTFAYLIFLVAQILQSLWIATYI-----PSTS---ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEA 754 (1255)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1255)
. .|.++++..++.++......+..+.+++.. ..+. .....|.++|++++++..+..++..+++.+.+.+.
T Consensus 661 p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~L 738 (1228)
T KOG0055|consen 661 P--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKL 738 (1228)
T ss_pred c--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233333334444443333333333333221 2211 12345899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccc--cccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000845 755 SESIFYKLMSSLFRAPMAFYDS--TPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPM 832 (1255)
Q Consensus 755 ~~~l~~~l~~~vl~~p~~~f~~--~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 832 (1255)
..++|..+|+++++++++|||. |. |.+.+|+.+|...+...+...+..+++++..+++++++.++++|.++++++.+
T Consensus 739 t~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~ 817 (1228)
T KOG0055|consen 739 TKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLAT 817 (1228)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 56 99999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 833 IYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQR 912 (1255)
Q Consensus 833 ~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 912 (1255)
+++++.....+.+......+..............|++.+++||++|+.|++|.+.+.+.++...+...... .|-+..
T Consensus 818 ~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~ 894 (1228)
T KOG0055|consen 818 FPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG---LISGLG 894 (1228)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 77666655555555555555566666677788999999999999999999999999998888777655433 333333
Q ss_pred HHHHHHHHHHHHH---HH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCccc
Q 000845 913 LETLSAIVLATSA---LC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPEL 988 (1255)
Q Consensus 913 l~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~ 988 (1255)
+.+-.+++....+ .+ ..+...+..++..+-..+.....-...+........++-+...|+.++.++++.++.-+..
T Consensus 895 f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 895 FGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3333333322222 22 2334456666555443333322223344445556667778889999999999876532211
Q ss_pred ccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE
Q 000845 989 VQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL 1067 (1255)
Q Consensus 989 ~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~ 1067 (1255)
. .......+.+|+|+|+||+|+||.. ..+||+|+||+|++||++||||||||||||++.+|.|+|+|++|.|.|||+
T Consensus 975 ~--~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 975 S--TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGV 1052 (1228)
T ss_pred C--CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCc
Confidence 1 1111112357999999999999632 236999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcccEEEccCCccCCCchhhhcccC-CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1068 DITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL-SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1068 di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~-~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
||+++++++||++|++|.|||.||++||||||.++ .+.+++||.+ |++.++.|+||.++|+||||.|||+|.+
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~------Aak~ANaH~FI~sLP~GyDT~vGerG~Q 1126 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIE------AAKLANAHNFISSLPQGYDTRVGERGVQ 1126 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHH------HHHHhhhHHHHhcCcCcccCccCcccCc
Confidence 99999999999999999999999999999999987 3479999998 9999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
||||||||||||||++|||+|||||||||+||.++|+.+|++|++...++|+|+|||||+||++||.|.|+++|+|+|+|
T Consensus 1127 LSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1127 LSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHHHH
Q 000845 1227 EPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+|++|++ ++|.|++|++.+.
T Consensus 1207 tH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1207 THDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred cHHHHHh-CCCchHHHhhhcc
Confidence 9999999 5899999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-131 Score=1314.98 Aligned_cols=1114 Identities=18% Similarity=0.197 Sum_probs=820.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 117 ILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTG 196 (1255)
Q Consensus 117 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1255)
+++..-+.+++.++++.++.++..++..+.|++++++++.+...+ ... .+++.++++.++..++...+.+...+++
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 125 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVN---DIIFSLVLIGIFQFILSFISSFCMDVVT 125 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556777888888999999999999999999999764221 111 1222233333333344444455666677
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Q 000845 197 LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATL 274 (1255)
Q Consensus 197 ~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~ 274 (1255)
.++...+...+|++.++++....+....|++.|.++.|++.+...+. .+..+...++.+++++++++. +.| .+++.+
T Consensus 126 ~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~l 204 (1466)
T PTZ00265 126 TKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 77777777888889998887777778889999999999999988653 455555566666666655554 455 677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 275 IVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 354 (1255)
+++++++.+..++.+++.+..++..+..++..+.+.|.+++||+||.|+.|+.+.++..+..+...+...+.....++..
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788788888889999888888888889999999999999999999999999999987654444443333333333322
Q ss_pred HHHHH--HHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000845 355 VLFWS--SPILIGAATLLTCYFLGI--------PLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEA 424 (1255)
Q Consensus 355 ~~~~~--~~~~~~~~~f~~~~~~~~--------~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~ 424 (1255)
.+... .-..+.+++||.+.+..+ .++++.+++.+....+...++..+.+.+..+..+.+|++||.+.++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22111 122344567777766543 57888888776544444455566666789999999999999999987
Q ss_pred CCCCCcchhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--
Q 000845 425 PELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-- 502 (1255)
Q Consensus 425 ~e~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-- 502 (1255)
++..+......... ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||+|||||||+++|+|.++|.+|
T Consensus 365 ~~~~~~~~~~~~~~--~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 365 KPLVENNDDGKKLK--DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred CCCCCCCCCCccCC--CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 54322111111101 12369999999999865555899999999999999999999999999999999999999888
Q ss_pred -----------------------------------------cc-------------------------------------
Q 000845 503 -----------------------------------------MD------------------------------------- 504 (1255)
Q Consensus 503 -----------------------------------------~D------------------------------------- 504 (1255)
..
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchh
Confidence 00
Q ss_pred ---------------------------------------cCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 505 ---------------------------------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 505 ---------------------------------------i~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
+..+|+|++|.+|++|.+|||||||||+||||++++|+|+|
T Consensus 523 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILl 602 (1466)
T PTZ00265 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILI 602 (1466)
T ss_pred hhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 01468888999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCC--------------------------
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGG-------------------------- 597 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G-------------------------- 597 (1255)
|||||||||+++++.+ ++.+..+. +|+|+|+|||+++.+..||+|++|++|
T Consensus 603 LDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 603 LDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred EeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 9999999999998776 45666554 489999999999999999999999886
Q ss_pred ---------------------EEEEecChhHHhh-cchHHHHHHHHhhhcCCCC-----ccccc-CCCc--cch-----h
Q 000845 598 ---------------------EIIQAATYDHLLV-TSQEFQDLVNAHKETMGPE-----TFGEH-VSSK--EDE-----N 642 (1255)
Q Consensus 598 ---------------------~i~~~G~~~el~~-~~~~~~~l~~~~~~~~~~~-----~~~~~-~~~~--~~~-----~ 642 (1255)
+|+++|+|+||++ ..+.|..+++.+....... +.... .... ... .
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPD 761 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 5999999999997 6888988886543221110 00000 0000 000 0
Q ss_pred hhccc--cc-cC-C-CC-CCC--c--chhhhH------HHh--hcCCC--chhhHHHHHhcccchHHHHHHHHHHHHHHH
Q 000845 643 EVKKV--ED-EG-H-NN-TSP--A--DQLIKK------EER--ETGDT--GLKPYIDYLSHKKGFLYFTLSTFAYLIFLV 702 (1255)
Q Consensus 643 ~~~~~--~~-~~-~-~~-~~~--~--~~~~~~------~~~--~~g~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 702 (1255)
+.... .. .. . .. ... . .....+ ++. ..... .+..+++++.......+ +.+++.++..+
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 839 (1466)
T PTZ00265 762 EMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALSILVAGG 839 (1466)
T ss_pred cccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 00000 00 00 0 00 000 0 000000 000 00001 12233444432222211 22223333334
Q ss_pred HHHHHHHHHhhhcC----CC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 000845 703 AQILQSLWIATYIP----ST--SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDS 776 (1255)
Q Consensus 703 ~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~ 776 (1255)
+..+.++.++.+++ .. ......+.+++++++++..++.+++.++..+.+.++..++|.++|++++++|++||++
T Consensus 840 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~ 919 (1466)
T PTZ00265 840 LYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQ 919 (1466)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence 44444444443221 11 1112356677777888888889999999999999999999999999999999999986
Q ss_pred --cccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 000845 777 --TPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFAT--AKELMR 852 (1255)
Q Consensus 777 --~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~r~l~~ 852 (1255)
+++|++++|+++|++.+...+...+..++..++.+++.++++++++|.++++++|+++++..+.....+. .++.++
T Consensus 920 ~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1466)
T PTZ00265 920 DKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEK 999 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999998877666544433222111111 111111
Q ss_pred H-------------HHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 853 I-------------NGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAI 919 (1255)
Q Consensus 853 ~-------------~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~ 919 (1255)
. +.+..+.+.+.+.|++.|++|||+|+.|+++.+++.+..+...+..........++....+.+..+
T Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1466)
T PTZ00265 1000 KEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLF 1079 (1466)
T ss_pred hhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223355678899999999999999999999999999988887776655444443333333333333
Q ss_pred HHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCC-CCC
Q 000845 920 VLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSP-APD 997 (1255)
Q Consensus 920 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~-~~~ 997 (1255)
..+++.++ ..++..|.++.|.+..++.+.+.....+..+...+..+.....+.+|+.++++.+++.+........ +..
T Consensus 1080 ~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~ 1159 (1466)
T PTZ00265 1080 INSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNK 1159 (1466)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccC
Confidence 22222222 3344567888887666555544344456667778888999999999999999865432211111110 001
Q ss_pred CCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-------------------
Q 000845 998 WPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP------------------- 1057 (1255)
Q Consensus 998 ~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~------------------- 1057 (1255)
.+..|.|+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1160 ~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265 1160 NDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred CCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccc
Confidence 2245789999999999742 24699999999999999999999999999999999999999
Q ss_pred -----------------------------------CCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccC
Q 000845 1058 -----------------------------------TGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL 1102 (1255)
Q Consensus 1058 -----------------------------------~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~ 1102 (1255)
++|+|+|||+||+++++++||++|+||||||+||+|||||||.++
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g 1319 (1466)
T PTZ00265 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG 1319 (1466)
T ss_pred cccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC
Confidence 699999999999999999999999999999999999999999987
Q ss_pred C-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHH
Q 000845 1103 S-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181 (1255)
Q Consensus 1103 ~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~t 1181 (1255)
. +++|+|+++ |++.+++++||.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++|
T Consensus 1320 ~~~at~eeI~~------A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1320 KEDATREDVKR------ACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred CCCCCHHHHHH------HHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 4 589999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeC----CEEE-EEcChhHHhhcCChHHHHHHHHH
Q 000845 1182 DSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSD----GKLV-EYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1182 e~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~----G~iv-e~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
|+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++.+|.|++|++.+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999999874 68999999999999999999999999 9955 99999999985589999999764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-94 Score=843.42 Aligned_cols=562 Identities=23% Similarity=0.359 Sum_probs=484.3
Q ss_pred hhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIP------STSISRLKLVIVYSGIGIGMMFLLLTRSFLV 747 (1255)
Q Consensus 674 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1255)
++..+.|.+...++ +...+++.++.....++.|+++...++ +........+.+..++.++.+++.+++.+++
T Consensus 135 ~~rl~~l~~~~~~~--l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKW--LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhHHH--HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666544333 223344445555566677766543222 1111223456677788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 748 VYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLL 827 (1255)
Q Consensus 748 ~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 827 (1255)
.+.+.++..++|..+|++++++.++|||.+.+|++++|++.|...+...++..+...+.+.+..++.+++|++.+|.+++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 828 VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907 (1255)
Q Consensus 828 ~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1255)
+.+..+++...+.++|.+..|++.+...++.+..+....|.+.+++|||+|+.|+...+++.+.+++..+..........
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999988888876665543333222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCc
Q 000845 908 WLIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAP 986 (1255)
Q Consensus 908 wl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~ 986 (1255)
.+....++........+..+ ..++..|.++.|.+...+.|...+...+..+...+.++-+...|.+|+.++++.++.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 22222333333322222222 34556788999999999999999999999999999999999999999999998765533
Q ss_pred ccccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEc
Q 000845 987 ELVQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 987 ~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~id 1065 (1255)
.. ....+. ..+|.|+|+||+|+||.. ..+||+|+||+|+|||.||+||||||||||++++|+|||+|++|+|.+|
T Consensus 453 ~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 453 LT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 21 111222 468999999999999643 3469999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1066 GLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1066 G~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
|+||++++.+.||++||+|.|||+||+|||+|||.++. ..+||||.+ |++.++.++||.++|+||||.|||+|
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~------AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEA------AAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHH------HHHHhChHHHHHhCccccccccCCcc
Confidence 99999999999999999999999999999999998654 589999988 99999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 1224 (1255)
.+|||||||||||||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHhhcCChHHHHHHHHHH
Q 000845 1225 YDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1225 ~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
.|+|+||+++++|.|++|++++.
T Consensus 683 ~G~h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 683 MGTHDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred cccHHHHhhCcccHHHHHHHHhc
Confidence 99999999998899999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-86 Score=810.02 Aligned_cols=544 Identities=26% Similarity=0.367 Sum_probs=492.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC----CCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 692 LSTFAYLIFLVAQILQSLWIATYIPS----TSISRLKL-VIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSL 766 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~v 766 (1255)
-+++..++..++.++.|++..+.+|. ...+...+ .+.+++.++...++.+++.+++...+.+....+-.++++++
T Consensus 158 ~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hl 237 (709)
T COG2274 158 EVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHL 237 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555666777778888887766654 33333333 34455667778899999999999999999999999999999
Q ss_pred hcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 767 FRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFAT 846 (1255)
Q Consensus 767 l~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 846 (1255)
++.|++||+++++|++++|+ +|++.|...+.......+..++..++.+++|++++|.++++.+..++++..+...+.+.
T Consensus 238 l~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~ 316 (709)
T COG2274 238 LRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL 316 (709)
T ss_pred HcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 57888888888888888888888999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSAL 926 (1255)
Q Consensus 847 ~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 926 (1255)
.|+..+...+..+..++++.|++.|+.|||+.+.|+++..++.+..+++.+..+.......|......++..+....+.+
T Consensus 317 l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~ 396 (709)
T COG2274 317 LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILW 396 (709)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999998888888888888887776665555
Q ss_pred H-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEE
Q 000845 927 C-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVE 1005 (1255)
Q Consensus 927 ~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~ 1005 (1255)
+ +..+..+.++.|.+-.+.+....+..++..+++.|.++.....+.+|+.++++.|+|.+.. ..+...|+..|+|+
T Consensus 397 ~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~~~~~~~~~~g~I~ 473 (709)
T COG2274 397 FGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---KTLIHLPKLQGEIE 473 (709)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cccccccccCceEE
Confidence 4 3456678899999999999999999999999999999999999999999999998885432 11334456789999
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+|+|.|+|+|++|+|++||+|+++++++++|++|+|||
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1086 QDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1086 Qdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
||++||+|||||||...+. .++||+++ |++.+++++||.++|.||||+|||+|.||||||||||+||||++++
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~------A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIE------AAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHH------HHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999997664 67899999 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
|+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+||++. +|.|+++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 899999987
Q ss_pred HH
Q 000845 1245 EY 1246 (1255)
Q Consensus 1245 ~~ 1246 (1255)
++
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 64
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=773.60 Aligned_cols=544 Identities=26% Similarity=0.419 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000845 692 LSTFAYLIFLVAQILQSLWIATYIPSTS---ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFR 768 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~ 768 (1255)
..+++.++..+.....++++.+..+... .....+...++++.++..++.++..+...+.+.+...++|.++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 97 (567)
T COG1132 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLR 97 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445556666666666664443322 1123344445555556677777777778888899999999999999999
Q ss_pred CCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 769 APMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAK 848 (1255)
Q Consensus 769 ~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r 848 (1255)
.|+++|++++.|++++|+++|++.++..+......+...++.+++.+++++..+|.++++++...+++.....++.+..+
T Consensus 98 ~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 177 (567)
T COG1132 98 LPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177 (567)
T ss_pred CCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888666666788889999999999999988877777777666667776668
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000845 849 ELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC- 927 (1255)
Q Consensus 849 ~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~- 927 (1255)
...+...+..+.+.+.+.|+++|+++||+|+.++...+++.+..+...+..........++......+..+.......+
T Consensus 178 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
T COG1132 178 KLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999887777777666665554433333333333333333322222222
Q ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEE
Q 000845 928 TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIY 1007 (1255)
Q Consensus 928 ~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~ 1007 (1255)
......+.++.|.+...+.+...+..++..+...+..+.....+.+|+.++++.+++.... .. +.++..|.|+|+
T Consensus 258 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~--~~~~~~~~I~f~ 332 (567)
T COG1132 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDP---PD--PLKDTIGSIEFE 332 (567)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---CC--CCCCCCCeEEEE
Confidence 2234456688999999999999999999999999999999999999999999875542211 11 123456889999
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccC
Q 000845 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087 (1255)
Q Consensus 1008 nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQd 1087 (1255)
||+|+|++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.|||+||++++.++||++|++||||
T Consensus 333 ~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 333 NVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred EEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 99999975 35699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC
Q 000845 1088 PTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166 (1255)
Q Consensus 1088 p~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ 1166 (1255)
|+||+|||++||+++.+ ++|||+++ |++.++++|++.++|+||||.|||+|.+||||||||||||||++|+|+
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~------a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEE------ALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHH------HHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999998865 89999999 999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1167 ILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1167 ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
|||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++|++.+
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~ 564 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQ 564 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHh
Confidence 99999999999999999999999988889999999999999999999999999999999999999997 89999999987
Q ss_pred HH
Q 000845 1247 WS 1248 (1255)
Q Consensus 1247 ~~ 1248 (1255)
+.
T Consensus 565 ~~ 566 (567)
T COG1132 565 GG 566 (567)
T ss_pred hc
Confidence 53
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-80 Score=772.60 Aligned_cols=558 Identities=20% Similarity=0.236 Sum_probs=451.3
Q ss_pred hhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 675 KPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS-----TSIS-RLKLVIVYSGIGIGMMFLLLTRSFLVV 748 (1255)
Q Consensus 675 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1255)
+.+++|++..++.++ +.+++.++..++....++.+.+..+. .... ...++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655443332 33334445555566666666544331 1111 122334455555667777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLV 828 (1255)
Q Consensus 749 ~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 828 (1255)
..+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREW 908 (1255)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 908 (1255)
++.++++.+++...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776776666777777777777777888899999999999999999999999999999988888777766554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 000845 909 LIQRLETLSAIVLATSALCTTLLHKGHKGAGYT---------GMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYM 979 (1255)
Q Consensus 909 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~ 979 (1255)
.......+..+...++.++......+.++.|.+ -.++.+...+..++..+...+..+.....+.+|+.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333333332222211111111244444432 12224445667778888888888999999999999999
Q ss_pred cCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 000845 980 RIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059 (1255)
Q Consensus 980 ~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~ 1059 (1255)
+.+++.+.. ... +...+..+.|+|+||+|.|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++
T Consensus 329 ~~~~~~~~~--~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 329 ETPLAHPQQ--GEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred cCCCcccCC--Ccc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 876543211 110 1111234679999999988654 56999999999999999999999999999999999999 999
Q ss_pred CEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccc
Q 000845 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1060 G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
|+|.+||+|+++++.+++|++|+||||||+||+|||||||.++. +++|+|+++ |++.+++++++.++|+||||
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~------al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQ------ALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHH------HHHHhCHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999874 589999998 99999999999999999999
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEe
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMS 1218 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 1218 (1255)
.+||+|.+|||||||||+||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1219 DGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1219 ~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
+|+|+|.|+|+||+++ +|.|+++++.+
T Consensus 558 ~G~i~e~G~~~eL~~~-~~~y~~l~~~q 584 (588)
T PRK11174 558 DGQIVQQGDYAELSQA-GGLFATLLAHR 584 (588)
T ss_pred CCeEeecCCHHHHHhc-chHHHHHHHHh
Confidence 9999999999999986 78999998764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=771.26 Aligned_cols=555 Identities=23% Similarity=0.319 Sum_probs=465.9
Q ss_pred hhhHHHH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDY-LSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISR-LKLVIVYSGIGIGMMFLLLTRSFLV 747 (1255)
Q Consensus 674 ~~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1255)
++.++++ ++..++. +...+++.++..++.++.++.+....+. ...+. ..+.+.++++.++..++.+++.++.
T Consensus 123 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (686)
T TIGR03797 123 LRDLLRFALRGARRD--LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAV 200 (686)
T ss_pred HHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 3433222 2233444555556666666666544432 22222 2233445555666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 748 VYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLL 827 (1255)
Q Consensus 748 ~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 827 (1255)
...+.+...+++.++++++++.|+.||++.++|++++|++ |++.+...+...+...+..++.+++.++++++++|.+++
T Consensus 201 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 279 (686)
T TIGR03797 201 LRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 788888888887777777777777888889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 828 VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907 (1255)
Q Consensus 828 ~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1255)
+++.++++++.+..++.+..+...+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666666666677777788899999999999999999999999999999999988888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCc
Q 000845 908 WLIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAP 986 (1255)
Q Consensus 908 wl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~ 986 (1255)
|.......+..+...++.++ ..+...|.++.|.+..+..+...+..++..+...+..+.....+.+|+.++++.++|.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 76665555544433333222 33445788999998888889899999999999999999999999999999998766532
Q ss_pred ccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC
Q 000845 987 ELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 987 ~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG 1066 (1255)
.. .. ...+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 440 ~~---~~--~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 514 (686)
T TIGR03797 440 EA---KT--DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514 (686)
T ss_pred cC---cC--CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 11 11 11123578999999999976667899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1067 LDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1067 ~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
+|+++++.+++|++|+||||||++|+|||||||.++.+.+|+++++ |++.+++++++.++|+|+||.+||+|.+
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~------al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE------AARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHH------HHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999876789999998 9999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
|||||||||+||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHH
Q 000845 1227 EPKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f~~l~~~ 1245 (1255)
+|+||+++ +|.|++|+++
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 7999999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-79 Score=771.87 Aligned_cols=551 Identities=22% Similarity=0.309 Sum_probs=460.0
Q ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 676 PYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISR-LKLVIVYSGIGIGMMFLLLTRSFLVVYL 750 (1255)
Q Consensus 676 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1255)
.+++|++.... .+...+++.++..+..++.+++....++. ..... ...+++++++.++..++.+++.+++.+.
T Consensus 151 ~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 228 (711)
T TIGR00958 151 RLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYT 228 (711)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543322 22334445556666777777776644432 12111 2234445555666778888888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000845 751 GLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIV 830 (1255)
Q Consensus 751 ~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 830 (1255)
+.+...++|.+++++++++|++||+++++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.++++++
T Consensus 229 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l 308 (711)
T TIGR00958 229 MARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTL 308 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 000845 831 PMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAR---E 907 (1255)
Q Consensus 831 ~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 907 (1255)
..+++.+++...+.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+......... .
T Consensus 309 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (711)
T TIGR00958 309 INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888888888888888888899999999999999999999999999999888887766554433222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 908 WLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 908 wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
|....+..+..+++ ..........|.++.|.+..++.|...+...+..+...+..+.....+.+|+.++++.+++.+.
T Consensus 389 ~~~~~~~~~~~~~i--l~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 389 WTTSVLGMLIQVLV--LYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32222222222111 1122233457889999999999999999999999999999999999999999999987654322
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG 1066 (1255)
. .....++..|.|+|+||+|+|+.. .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 467 ~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 111123456789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCChHHhhcccEEEccCCccCCCchhhhcccC-CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1067 LDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL-SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1067 ~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~-~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
+|+++++.+++|++|+||||||++|+|||||||.+. .+.+|+++++ +++.++++++++++|+|+||.+||+|.
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~------al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA------AAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHH------HHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 999999999999999999999999999999999865 3578999998 999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1225 (1255)
+||||||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999 334578999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHH
Q 000845 1226 DEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1226 G~~~eLl~~~~~~f~~l~ 1243 (1255)
|+|+||+++ +|.|++|+
T Consensus 695 Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 695 GTHKQLMED-QGCYKHLV 711 (711)
T ss_pred eCHHHHHhC-CCchHhcC
Confidence 999999986 78998874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-78 Score=768.65 Aligned_cols=558 Identities=21% Similarity=0.294 Sum_probs=467.5
Q ss_pred hhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISR-LKLVIVYSGIGIGMMFLLLTRSFLVV 748 (1255)
Q Consensus 674 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1255)
++.++.+++..++... ..+++.++..++.++.+++.....+. ...+. ..+++.++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555654333222 23333445555556666666644432 22221 22334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLV 828 (1255)
Q Consensus 749 ~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 828 (1255)
..+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.++++++++|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56787788888888888888899999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREW 908 (1255)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 908 (1255)
++.++++++++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777777888889999999999999999999999999999998888887777666666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 909 LIQRLETLSAIVLATSAL-CTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 909 l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
.......+..+...++.+ .+.....|.++.|.+..+..+...+..++..+...+..+.....+.+|+.++++.++|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 655555554443333222 2334557889999999999999999999999999999999999999999999987766432
Q ss_pred cccC--C-CCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEE
Q 000845 988 LVQK--N-SPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 988 ~~~~--~-~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~i 1064 (1255)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113346789999999999876677999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC
Q 000845 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1065 dG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~ 1143 (1255)
||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+++++ |++.+++++++.++|+|+||.++|+
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~------al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVR------ACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHH------HHHHhCCHHHHHhCcCcccceeccC
Confidence 999999999999999999999999999999999998765 589999998 9999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEE
Q 000845 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 1223 (1255)
|.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999999999999999999999999
Q ss_pred EEcChhHHhhcCChHHHHHH
Q 000845 1224 EYDEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1224 e~G~~~eLl~~~~~~f~~l~ 1243 (1255)
|.|+|+||+++ ++.|++|+
T Consensus 691 ~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EecCHHHHHHc-CCcHHHHh
Confidence 99999999986 78999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-79 Score=754.39 Aligned_cols=513 Identities=23% Similarity=0.331 Sum_probs=434.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHH
Q 000845 723 LKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKST 802 (1255)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~ 802 (1255)
..+.+.|+.++++..+..++...++.+.+.|...++|.+.++++++++++|||.+..|++..|+++|++.+++.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45677888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHH
Q 000845 803 IAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEE 882 (1255)
Q Consensus 803 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~ 882 (1255)
.++..+..+++.+++.++..|.++++++++.++.......+.+..-.....+..+.+...+...|++.+++|+.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999999888888877778877777777888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHhccCcccHHHHHHHHHHHHHHHHHHHHH
Q 000845 883 RFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLA---TSALCT-TLLHKGHKGAGYTGMALSFGLSLNDFLVYS 958 (1255)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~ 958 (1255)
+..+++.+.++...+...... .|.+........++.. ...++. .++..+..++|.+...+...+.-...+...
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 999999998888777654332 2222222222122111 122222 222334444444433333333333344444
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEE
Q 000845 959 VNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNA-PLVLRGITCTFEGGHKIGVV 1037 (1255)
Q Consensus 959 ~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~Ge~vaIv 1037 (1255)
......+.+...|..++.+.++..+.......... ..-...|.|+|+||+|+||... .++|+|+||+|++||.||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 44555666778889999998875443221111111 1112479999999999996432 36999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCc
Q 000845 1038 GRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIP 1116 (1255)
Q Consensus 1038 G~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~ 1116 (1255)
|+|||||||++++|.|+|+|++|+|+|||.|+++++.++||++||+|.|+|+||++||+|||.++. ++|++|+.+
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~---- 461 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEE---- 461 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHH----
Confidence 999999999999999999999999999999999999999999999999999999999999999776 589999998
Q ss_pred hhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCc
Q 000845 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC 1196 (1255)
Q Consensus 1117 ~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~ 1196 (1255)
|++.++.++||.++|+||||.+||+|.+||||||||+||||||+|+|+|||||||||+||+++|+.||++|++..+|+
T Consensus 462 --a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 462 --AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred --HHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1197 TVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1197 TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
|.|+|||||+||+++|+|+||++|+|||.|+|+||++++ |.|++|++.+.
T Consensus 540 TTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 540 TTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 999999999999999999999999999999999999985 99999998773
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=748.37 Aligned_cols=543 Identities=23% Similarity=0.367 Sum_probs=450.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC----CCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 693 STFAYLIFLVAQILQSLWIATYIPS----TSISRLK---LVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSS 765 (1255)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 765 (1255)
.+++.++..++.++.++++.+.++. ....... ++++++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666667766654432 1111111 12234444455666777888888899999999999999999
Q ss_pred HhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 766 LFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFA 845 (1255)
Q Consensus 766 vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 845 (1255)
+++.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++++..+++.+.+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887665555554445555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000845 846 TAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWL-IQRLETLSAIVLATS 924 (1255)
Q Consensus 846 ~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 924 (1255)
..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. ......+..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666778888999999999999999999999999999887777666555443333322 222222222221111
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceE
Q 000845 925 ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKV 1004 (1255)
Q Consensus 925 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I 1004 (1255)
.+.......|.++.|.+..++.+...+..++..+...+..++....+.+|+.++++.++++... . ..++..+.|
T Consensus 268 ~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~---~~~~~~~~i 341 (592)
T PRK10790 268 LMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---D---DRPLQSGRI 341 (592)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---C---ccCCCCCeE
Confidence 1111123467889999999999999999999999999999999999999999998765442211 1 112345789
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.+.+|++|+||
T Consensus 342 ~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 342 DIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999743 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1085 pQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
||||.+|+||||+||.++++++|+++++ +++++|++++++++|+||||.++|+|.+|||||||||+||||++++
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~------a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQ------ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHH------HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999888889999998 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||+++ ++.|+++++
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 573 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQ 573 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999999999999999987 799999998
Q ss_pred HHHHh
Q 000845 1245 EYWSH 1249 (1255)
Q Consensus 1245 ~~~~~ 1249 (1255)
.+.++
T Consensus 574 ~~~~~ 578 (592)
T PRK10790 574 LQLAG 578 (592)
T ss_pred HHhhh
Confidence 76443
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=765.43 Aligned_cols=556 Identities=23% Similarity=0.301 Sum_probs=460.8
Q ss_pred hhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCChh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISRL-KLVIVYSGIGIGMMFLLLTRSFLVV 748 (1255)
Q Consensus 674 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1255)
++.++.+++..+..+ ...+++.++..++.++.++++....+. ...... .+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665443332 233444455566666777777655442 111111 2233344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLV 828 (1255)
Q Consensus 749 ~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 828 (1255)
..+.+...+++.++++++++.|+.||+++++|++++|++ |.+.+...+...+...+..++.+++.++++++.+|.++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888777777776676777777777888888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREW 908 (1255)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 908 (1255)
++..+++++++...+.+..++..+...+..+...+.+.|+++|+.+||+|+.|+++.+++.+..+...+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888888888888999999999999999999999999999999988888777666655444433
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 909 LIQRLETLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 909 l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
.......+..+...++ .+...+...|.++.|.+..+..+...+..++..+...+..+.....+++|+.++++.++|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 3333333322222222 222334457889999999999999999999999999999999999999999999988766432
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL 1067 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~ 1067 (1255)
.. .....++..|.|+|+||+|+|++ .+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 461 ~~---~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 KK---KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cc---cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 11 11122345678999999999964 357999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcccEEEccCCccCCCchhhhcccC--CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1068 DITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL--SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1068 di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~--~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
|+++++.+++|++|+||||||+||+|||||||.++ .+++|+++++ +++.+++++++.++|+||||.++|+|.
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~------a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWA------ACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHH------HHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999976 3588999998 999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1225 (1255)
+|||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||++++..||+|+||++|+++|.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999874 78999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHHH
Q 000845 1226 DEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1226 G~~~eLl~~~~~~f~~l~~ 1244 (1255)
|+|+||+++ +|.|++|++
T Consensus 690 G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc-CCcHHHHhh
Confidence 999999986 789999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=676.09 Aligned_cols=501 Identities=19% Similarity=0.297 Sum_probs=440.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHH
Q 000845 731 GIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMA 810 (1255)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~ 810 (1255)
+++++..+..+...+......+++-..+|.++|+++...+..-..+...|+++||+..|++.+|+.+-..+...+..++.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 56677777888888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHH
Q 000845 811 VISTFVVLGALTWQVLLVIV-PMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNL 889 (1255)
Q Consensus 811 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~ 889 (1255)
.++..+.+.+++|.+++.+. .++.+.+.+...+.+..+...+.-...++.+.+++.|.+.|....+.||.++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 88888888899999886544 45555677888888888999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Q 000845 890 DLIDAYASSFFHSFTAREWLIQRLETLSAIVLA-TSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSV-NNQCIVGN 967 (1255)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~-~~~~~~~~ 967 (1255)
...+.+.+..........|....+.++.++.+. ...+.......|..+...+.+++..++.....+..+. ..+.++..
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999988888999988888888777665 3334443344455554334444444344444455455 56688889
Q ss_pred hhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCc-eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHH
Q 000845 968 LIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTG-KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTT 1046 (1255)
Q Consensus 968 ~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g-~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKST 1046 (1255)
...|..|+.+..+.++|.... .. ..|..+ .++++||+|+|+.+.+++|+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~---~~---~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP---DE---QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC---cc---ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988766554321 01 111222 79999999999988889999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccH
Q 000845 1047 LISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQL 1125 (1255)
Q Consensus 1047 Ll~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l 1125 (1255)
++++|.|.++|++|+|.++|.|++.++.+++|+.|++++|.++||+||+|+||...+ ++||||+|+ ++++++|
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~------aL~qvgL 453 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWA------ALQQVGL 453 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHH------HHHHcCH
Confidence 999999999999999999999999999999999999999999999999999998654 589999999 9999999
Q ss_pred HHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCc
Q 000845 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205 (1255)
Q Consensus 1126 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl 1205 (1255)
++++.+.|+||+|++||+|.+|||||||||+|||+||++.+++||||||.+||++||+.|.+.|.+..+|+|+|+||||+
T Consensus 454 ~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 454 EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1206 ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1206 ~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
..+..||||+|||+|+++|+|+|.+|+++ +|.|+++++
T Consensus 534 ~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 534 RGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred ccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999999999995 899999875
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-77 Score=737.65 Aligned_cols=556 Identities=19% Similarity=0.261 Sum_probs=451.5
Q ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC---ChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 000845 676 PYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSI---SRLK--LVIVYSGIGIGMMFLLLTRSFL 746 (1255)
Q Consensus 676 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~ 746 (1255)
.+++|++..++.+. +.+++.++..++.+..++.+.|.++. ... .... .+..+.++.++..++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 6 PFLKLYKRHWFMLS--LGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred HHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556554333322 33344445555566666666665432 110 0111 1223334555667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000845 747 VVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVL 826 (1255)
Q Consensus 747 ~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 826 (1255)
....+.+...++|.++++++++.|+.+|++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 827 LVIVPMIYLI-IVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTA 905 (1255)
Q Consensus 827 ~~~~~~~~~~-~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1255)
++++..+++. +.+..++.+..+...+...+..+.+.+.+.|+++|+++||+|+.|+++.+++.+..++..+........
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765444433 334566666667777777888899999999999999999999999999999999988888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Q 000845 906 REWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFG-LSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSE 984 (1255)
Q Consensus 906 ~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e 984 (1255)
..+.......+..+...++..+......+..+.|.+..++.|. ......+..+...+..+.....+.+|+.++++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555555555544433333222222235666777665555554 333456666667778888889999999999987654
Q ss_pred CcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEE
Q 000845 985 APELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 985 ~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~i 1064 (1255)
.+.. ...+ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 324 ~~~~--~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 324 VTFP--TTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCC--cccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3211 0111 11345789999999999765457999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC
Q 000845 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1065 dG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~ 1143 (1255)
||+|+++++.+++|++|+||||||++|+|||||||.... +.+|+++++ +++.+++++++.+ |+||||.+||+
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~------al~~~~l~~~i~~-p~GldT~vge~ 472 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIE------VLQQVGLEKLLED-DKGLNAWLGEG 472 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHH------HHHHcCCHHHHcC-ccccCchhcCC
Confidence 999999999999999999999999999999999998754 579999998 9999999999999 99999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEE
Q 000845 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 1223 (1255)
|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEcChhHHhhcCChHHHHHHHH
Q 000845 1224 EYDEPKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1224 e~G~~~eLl~~~~~~f~~l~~~ 1245 (1255)
|.|+|+||+++ +|.|++|++.
T Consensus 553 ~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 553 EQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred EeCCHHHHHhc-CcHHHHHHhh
Confidence 99999999986 8999999863
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=681.92 Aligned_cols=512 Identities=21% Similarity=0.297 Sum_probs=444.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHH
Q 000845 722 RLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKS 801 (1255)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~ 801 (1255)
...+++.++++.++..++.+.+.......+.++...+|.++++++.+.++.+-...|+|++...++.-++.++.++...+
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHh
Q 000845 802 TIAVGTTMAVISTFVVLGALTWQVLLVI---VPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAF 878 (1255)
Q Consensus 802 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf 878 (1255)
+.++.+.+..+..++.+++.+|.-++++ .|+++++++ .....++...+....+...+.++|.|.++|+.|+|+|
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi---lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f 195 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI---LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAF 195 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 9999999999999999999999876654 455555443 3344555666667778888999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CcccHHHHHHHHHHHHHHHHHHH
Q 000845 879 QNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLL-HK-GHKGAGYTGMALSFGLSLNDFLV 956 (1255)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~g~~l~~~~~~~~~l~ 956 (1255)
+..+...++..+...++.+..+.....+.--+..++++.++.++.++++..+. .. |.++....-+++..+.-+..++.
T Consensus 196 ~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR 275 (559)
T COG4988 196 GRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLR 275 (559)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999988888888877777778888888888777766665432 22 45555444455666667777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEE
Q 000845 957 YSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGV 1036 (1255)
Q Consensus 957 ~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaI 1036 (1255)
.+-..+....+...+.+.+..+.+.|.+.+... ......|.....|+.+|++|+|+.+. ++++|+||+++||+++||
T Consensus 276 ~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~tal 352 (559)
T COG4988 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTAL 352 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEE
Confidence 777777777777888999999988766543221 11122232334566679999998654 799999999999999999
Q ss_pred EcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCC-CChHHHHhccC
Q 000845 1037 VGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTI 1115 (1255)
Q Consensus 1037 vG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~ 1115 (1255)
||+||||||||+++|+|+++|++|+|.+||+|.++++.+.+|+++++|||+|++|+|||||||.+++. .+|+++++
T Consensus 353 vG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~--- 429 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA--- 429 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 88999998
Q ss_pred chhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCC
Q 000845 1116 PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195 (1255)
Q Consensus 1116 ~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~ 1195 (1255)
+++++++.++++. |+||||++||+|.+|||||+||+++|||++++++++++|||||+||.|||+.|++.|.+.+++
T Consensus 430 ---al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ 505 (559)
T COG4988 430 ---ALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505 (559)
T ss_pred ---HHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1196 CTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1196 ~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+|||+||||++.+.++|+|+|||+|+++|.|+|++|.++ +|.|++|++++.
T Consensus 506 ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~ 556 (559)
T COG4988 506 KTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556 (559)
T ss_pred CeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHh
Confidence 999999999999999999999999999999999999986 899999998864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=742.32 Aligned_cols=507 Identities=21% Similarity=0.316 Sum_probs=449.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHH
Q 000845 729 YSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTT 808 (1255)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~ 808 (1255)
++++.++..++.+++.++....+.+....++.++++++++.|..+|++.+.|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHH
Q 000845 809 MAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKN 888 (1255)
Q Consensus 809 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~ 888 (1255)
+.+++.++++++.+|+++++++..+++.+++..++.+..++..+......+.+.+++.|.++|+.+||+|+.++.+.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999999887777777766777777777777777777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000845 889 LDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGN 967 (1255)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~ 967 (1255)
.+..+...+..........|.....+.+..+...++..+ ......|.++.|.+.+++++...+..++..+...+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877776666666666666554433332222 3334568899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHH
Q 000845 968 LIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTL 1047 (1255)
Q Consensus 968 ~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTL 1047 (1255)
...+.+|+.++++.+++.+.. . ....|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG---K--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC---C--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999998876543211 1 11123456899999999997665779999999999999999999999999999
Q ss_pred HHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC--CCChHHHHhccCchhHHHhccH
Q 000845 1048 ISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQL 1125 (1255)
Q Consensus 1048 l~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~--~~sd~ei~~~~~~~~al~~~~l 1125 (1255)
+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||++|+|||||||.... .++|+++++ +++.+++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~------al~~~~l 459 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEE------AARMAYA 459 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHH------HHHHhCc
Confidence 99999999999999999999999999999999999999999999999999998643 479999998 9999999
Q ss_pred HHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCc
Q 000845 1126 REVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205 (1255)
Q Consensus 1126 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl 1205 (1255)
+++++++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||+
T Consensus 460 ~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred HHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1206 ATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1206 ~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+++..||+|++|++|+|+|.|+|++|+++ ++.|++|++++-
T Consensus 540 ~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 540 STIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHh
Confidence 99999999999999999999999999986 689999998653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-79 Score=668.35 Aligned_cols=534 Identities=22% Similarity=0.337 Sum_probs=428.6
Q ss_pred HHHHHHHHHHHHHhhhcC---CCCCChhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000845 699 IFLVAQILQSLWIATYIP---STSISRLKLVIVYSGIGI------GMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA 769 (1255)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~ 769 (1255)
+..+.....+.+.+|..+ .+..........|+.+.+ ++.++..+|+++......-..+.+-.++|+|+.+.
T Consensus 226 i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~L 305 (790)
T KOG0056|consen 226 IGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNL 305 (790)
T ss_pred HHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhh
Confidence 334444555555555443 233333334445554443 33567778888888899999999999999999999
Q ss_pred CcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHH----HHHHH
Q 000845 770 PMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVV-LGALTWQVLLVIVPMIYLIIVL----QNYYF 844 (1255)
Q Consensus 770 p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i----~~~~~ 844 (1255)
++.|+-...+|+++.-+.+..+.+. .+.....+..-.+.-+.++++- ....+||+.+++..+..++..+ ..+--
T Consensus 306 SlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRT 384 (790)
T KOG0056|consen 306 SLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRT 384 (790)
T ss_pred ceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhH
Confidence 9999999999999888877766665 3444444444444444443333 2346888887776666665443 33333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 845 ATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS 924 (1255)
Q Consensus 845 ~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 924 (1255)
+..|++...+.+++ ..-.+++-+.+|+|-|+.|+...+++.+.++++++..+.....-..+...-+.+.++.....
T Consensus 385 k~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~g 460 (790)
T KOG0056|consen 385 KARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAG 460 (790)
T ss_pred HHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhh
Confidence 33444444444443 45678999999999999999999999999999998876655444333333333222222222
Q ss_pred -HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCce
Q 000845 925 -ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGK 1003 (1255)
Q Consensus 925 -~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~ 1003 (1255)
.+.++.+..+..+.|...+..+|.+++..+++++-..+..++++..-+|++.++++.++|..+ .+..++-.-.+|.
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd---~P~a~pl~~~~G~ 537 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD---LPGAPPLKVTQGK 537 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc---CCCCCCccccCCe
Confidence 222233446678889999999999999999999999999999999999999999976655332 2222222235799
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+|+||+|.|.|+. |||+||||+++||+.||+|||||+||||++++|+|+++.++|+|.|||+||+++..++||++||+
T Consensus 538 i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred EEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 99999999998765 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
||||.+||++||..||.+.. .++|||+.+ |++.+++||-|.++|+||+|.|||+|-.||||||||+||||++|
T Consensus 617 VPQDtvLFNdTI~yNIryak~~Asneevya------AAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYA------AAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHH------HHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999765 589999998 99999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
|+|.|++||||||+||..||+.||.++.+..+++|.|+||||++||.++|.|+|+++|+|+|.|+|+||+++++|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 000845 1243 VKEYW 1247 (1255)
Q Consensus 1243 ~~~~~ 1247 (1255)
|+.++
T Consensus 771 Wq~qq 775 (790)
T KOG0056|consen 771 WQAQQ 775 (790)
T ss_pred HHHHH
Confidence 96553
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-76 Score=750.27 Aligned_cols=548 Identities=23% Similarity=0.295 Sum_probs=457.2
Q ss_pred hhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCChh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISRL-KLVIVYSGIGIGMMFLLLTRSFLVV 748 (1255)
Q Consensus 674 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1255)
++.++.+++..++.+ ...+++.++..++.++.++.+....+. ...+.. .+.++++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLY--RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554333322 233344455556666677766654432 111222 2223344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLV 828 (1255)
Q Consensus 749 ~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 828 (1255)
+.+.+...+++.++++++++.|+.| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999988887777777777888888889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREW 908 (1255)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 908 (1255)
++..+++++.+..++.+..++..+...+..+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777778888888999999999999999999999999999999998888887777666555555
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 909 LIQRLETLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 909 l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
.......+..+...++ .+.+..+..|.++.|.+..++.+...+..++..+...+..+.....+.+|+.++++.++|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 5444444443322222 222334456889999999999999999999999999999999999999999999988765332
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL 1067 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~ 1067 (1255)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112345789999999999766667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcccEEEccCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1068 DITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1068 di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
|+++++.+++|++|+||||||++|+|||||||.+..+ ++|+++++ +++.+++++++.++|+||||.+||+|.+
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~------a~~~~~l~~~i~~lp~gl~T~i~e~G~~ 601 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILR------AAELAGVTEFVRRHPDGLDMQIGERGRS 601 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHH------HHHHcChHHHHHhCcccccceecCCCCC
Confidence 9999999999999999999999999999999997754 89999998 9999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
|||||||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+|+||+++
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 99999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-75 Score=738.33 Aligned_cols=559 Identities=23% Similarity=0.318 Sum_probs=466.5
Q ss_pred hhhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCChh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISRL-KLVIVYSGIGIGMMFLLLTRSFLVV 748 (1255)
Q Consensus 674 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1255)
++.++.+++..++.+. ..+++.++..++.++.++++....+. ...... .+.++++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555543332222 23334445555556667666654432 122222 2334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 749 YLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLV 828 (1255)
Q Consensus 749 ~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 828 (1255)
..+.+...+++.++++++++.|+.||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|.++++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 69999999888777777777777777788899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 829 IVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREW 908 (1255)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 908 (1255)
++..++++..+..++.+..++..+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.......+
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666666666677788999999999999999999999999999999998888877776666666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 909 LIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 909 l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
.......+..+...++.++ ..+...|.++.|.+..+..+...+..++..+...+..+.....+.+|+.++++.++|...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 6665555554433333222 334456889999998899999999999999999999999999999999999987765432
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL 1067 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~ 1067 (1255)
. .....+ +..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 444 ~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 444 A--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred C--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 111111 235789999999999876667999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1068 DITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1068 di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
|+++++.+++|++|+||||||++|+|||||||.... +.+++++++ +++.+++++++.++|+||||.++++|.+
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~------a~~~~~l~~~i~~lp~gl~t~i~~~g~~ 593 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIH------AAKLAGAHDFISELPQGYNTEVGEKGAN 593 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHH------HHHHcChHHHHHhCcCccCcEecCCCCC
Confidence 999999999999999999999999999999998754 578999998 9999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChHHHHHHHHH
Q 000845 1227 EPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
+|+||+++ +|.|++|++++
T Consensus 674 ~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 674 RHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CHHHHHHc-CChHHHHHHhh
Confidence 99999986 79999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=723.33 Aligned_cols=542 Identities=23% Similarity=0.342 Sum_probs=471.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC----CCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000845 693 STFAYLIFLVAQILQSLWIATYIP----STSISR-LKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF 767 (1255)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl 767 (1255)
.+++.++..++....++++....+ ...... ..+..+++++.++..++.+++.++....+.+....++..++++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~ 98 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLL 98 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555665543322 111111 223335666667778888899999999999999999999999999
Q ss_pred cCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 768 RAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATA 847 (1255)
Q Consensus 768 ~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 847 (1255)
+.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++++++++++++.+++..++.+..
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~ 178 (571)
T TIGR02203 99 GLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178 (571)
T ss_pred cCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 848 KELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC 927 (1255)
Q Consensus 848 r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 927 (1255)
++..+...+..+++.+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.......+..+...+..++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (571)
T TIGR02203 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFI 258 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999998888877777767666666665554433332222
Q ss_pred -HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEE
Q 000845 928 -TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEI 1006 (1255)
Q Consensus 928 -~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~ 1006 (1255)
......|.+++|.+..+..+...+..++..+...+..+.....+.+|+.++++.+++.+.. ..+. .+..+.|++
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~~~~~~i~~ 333 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--ERARGDVEF 333 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--CCCCCeEEE
Confidence 3344568899999999999999999999999999999999999999999999766553211 1111 123568999
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEcc
Q 000845 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ 1086 (1255)
Q Consensus 1007 ~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQ 1086 (1255)
+||+|+|+++.+++|+|+||+|+|||+|+|+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|+||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997655679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCchhhhcccCC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1087 DPTLFSGSVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1087 dp~Lf~gTIr~Nl~~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
+|++|+|||||||..+. +.+|+++++ +++.+++++++.++|+||||.++|+|.+||||||||||||||++++
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~------~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIER------ALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHH------HHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999764 589999998 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+++ ++.|+++++
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 566 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHN 566 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999999999999999986 689999877
Q ss_pred HH
Q 000845 1245 EY 1246 (1255)
Q Consensus 1245 ~~ 1246 (1255)
.+
T Consensus 567 ~~ 568 (571)
T TIGR02203 567 MQ 568 (571)
T ss_pred Hh
Confidence 54
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-74 Score=715.12 Aligned_cols=549 Identities=21% Similarity=0.282 Sum_probs=451.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000845 692 LSTFAYLIFLVAQILQSLWIATYIPSTS--ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA 769 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~ 769 (1255)
+.+++.++..++.+..++++.+..+.-. .....+++.++++.++..+..+....+......+...+++.++++++++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455566666677777765544211 11122233333334444444444455555566666667777999999999
Q ss_pred CcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 770 PMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKE 849 (1255)
Q Consensus 770 p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~ 849 (1255)
|..+|++.+.|++++|+++|++.+...+...+..++..++.+++.++++++.+|+++++++.++++++.+..++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887778888888888888888889999999888877777777788888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000845 850 LMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSAL-CT 928 (1255)
Q Consensus 850 l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~-~~ 928 (1255)
..+...+..+.+.+++.|+++|+.+||+|+.++.+.+++.+..++..+..........+.....+.+..+...++.+ ..
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999988888877776655555555444444333333222222 23
Q ss_pred HHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEE
Q 000845 929 TLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYD 1008 (1255)
Q Consensus 929 ~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~n 1008 (1255)
.....|.++.|.+..++.+...+..++..+...+..+.....+.+|+.++.+.+++.+.. ....+. -+..+.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~-~~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDL-GRVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCc-CCCCCeEEEEE
Confidence 345578899999998899988999999988888888888899999999987654432211 010011 12346799999
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCC
Q 000845 1009 LQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDP 1088 (1255)
Q Consensus 1009 vs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp 1088 (1255)
|+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999743 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCe
Q 000845 1089 TLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167 (1255)
Q Consensus 1089 ~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~I 1167 (1255)
.+|+|||||||..+. +.+|+++++ +++.+++++++.++|+|+||.++++|.+|||||||||+||||++++|+|
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~------al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRA------AAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHH------HHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999998764 578999998 9999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1168 LVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1168 LiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
||||||||+||++|++.|.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+++ ++.|++++++++
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 9999999999999999999999988789999999999999999999999999999999999999986 799999998776
Q ss_pred Hhhh
Q 000845 1248 SHAE 1251 (1255)
Q Consensus 1248 ~~~~ 1251 (1255)
.+.|
T Consensus 572 ~~~~ 575 (588)
T PRK13657 572 MLQE 575 (588)
T ss_pred cccc
Confidence 5443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-74 Score=649.19 Aligned_cols=510 Identities=22% Similarity=0.311 Sum_probs=406.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHH
Q 000845 723 LKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKST 802 (1255)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~ 802 (1255)
...+..|.+..+++.++..++.+.+.+...++.+....+.|.+.+++.+++|.+..+|.+.+.+.+-...+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999988888888777777666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcH
Q 000845 803 IAVGTTMAVISTFVVLGA-LTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNE 881 (1255)
Q Consensus 803 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~ 881 (1255)
.++..++.+......+.+ ..+.++++++..+..|..+.....+.-.+.++.-..+.....+...|++.+-.+||+||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 666666555554443333 3455554444444443322222222222333444455556677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 882 ERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVN 960 (1255)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~ 960 (1255)
++..+++...+.++.+......+....+.+.-..+.+.....+ .....-...+.++.|.+.+..++..++..++..+-.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 9999999998888877665544433332222222221111111 111111234567778888888888888888888877
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCC
Q 000845 961 NQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRT 1040 (1255)
Q Consensus 961 ~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~s 1040 (1255)
.+.++...+.-++-+....+... .. ... +.+.-+..|.|+|+||+|.|.|+ +++|+++||+|++||||||||+|
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~--~i--~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDE--DI--QEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhh--hh--hhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCC
Confidence 77777766665554443322111 10 111 11112235789999999999864 46999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhH
Q 000845 1041 GSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQV 1119 (1255)
Q Consensus 1041 GsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~a 1119 (1255)
||||||++++|+||++ ++|+|+|||+||++++++.+|+.|||||||..||++||-+||.+++ ..++||+.+ +
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e------~ 460 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVE------A 460 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHH------H
Confidence 9999999999999999 9999999999999999999999999999999999999999998765 489999998 9
Q ss_pred HHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEE
Q 000845 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVI 1199 (1255)
Q Consensus 1120 l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI 1199 (1255)
+++++++|.+.++|+||+|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.+.....++|+|
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1200 TVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1200 ~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
+|+||++++++||+|+|||+|+|+|.|+|+||++ +.+.|+.+|.++
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999999999999999999999999999999999 688998888754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=704.33 Aligned_cols=504 Identities=20% Similarity=0.256 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCC--CChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000845 693 STFAYLIFLVAQILQSLWIATYIPSTS--ISRLKLVIV---YSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF 767 (1255)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl 767 (1255)
.+++.++..++.++.++.+++.++... .....+... ++++.++..++.++..++....+.+...++|.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555666666666666544211 111111111 122344556677778888888999999999999999999
Q ss_pred cCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000845 768 RAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLII-VLQNYYFAT 846 (1255)
Q Consensus 768 ~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 846 (1255)
+.|..||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.++++++..++++. +...++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999887766554443 334455555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSAL 926 (1255)
Q Consensus 847 ~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 926 (1255)
.++..+...+..+.+.+++.|+++|+++||+|+.|+.+.+++.+..++..+..........+.......+..+...++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777889999999999999999999999999999998888877776655555444444333333333222222
Q ss_pred H-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEE
Q 000845 927 C-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVE 1005 (1255)
Q Consensus 927 ~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~ 1005 (1255)
+ ......|.++.|.+...+.+...+..++..+...+..+.....+.+|+.++++.+++.+... ...+...+|..+.|+
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~ 336 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLE 336 (529)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEE
Confidence 2 23345678899998888889889999999999999999999999999999998765432211 111111234457899
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|+|||
T Consensus 337 ~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 337 LRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred EEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 99999999754 4599999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1086 QDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1086 Qdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|||+||+|||||||.++. +.+|+++++ |++.+++++++.++|+||||.+||+|.+||||||||||||||++++
T Consensus 415 Q~~~lF~~TI~eNI~~g~~~~~~e~i~~------al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 415 QDAHLFDTTVRDNLRLGRPDATDEELWA------ALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred cCcccccccHHHHHhccCCCCCHHHHHH------HHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999864 579999998 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCc
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRI 1205 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl 1205 (1255)
|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-73 Score=707.06 Aligned_cols=559 Identities=21% Similarity=0.328 Sum_probs=461.5
Q ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 676 PYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPS----TSISR-LKLVIVYSGIGIGMMFLLLTRSFLVVYL 750 (1255)
Q Consensus 676 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1255)
.+++|++..+..+. +.+++.++..++.+..++.+....+. ..... ..++.+++++.++..++.+.+.++....
T Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVL--AALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543332222 23334445555555666655543332 11111 2223334444455566677888888899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000845 751 GLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIV 830 (1255)
Q Consensus 751 ~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 830 (1255)
+.+....++..+++++++.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888889999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 831 PMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLI 910 (1255)
Q Consensus 831 ~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 910 (1255)
..+++.+.+..++.+..+...+..........+++.|.++|+++||+|+.++.+.+++.+..++..+..........|+.
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666777777777888888889999999999999999999999999999999988887777665555555555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccc
Q 000845 911 QRLETLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELV 989 (1255)
Q Consensus 911 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~ 989 (1255)
.....+..+..+.. .+.......|.++.|.+..+..+...+..++..+...+..+.....+.+|+.++++.+++.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 44444333222222 22233345688899999999999999999999999999999999999999999987655422111
Q ss_pred cCCCCCCCCCCCceEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEe
Q 000845 990 QKNSPAPDWPPTGKVEIYDLQIRYRPNA-PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD 1068 (1255)
Q Consensus 990 ~~~~~~~~~p~~g~I~~~nvs~~Y~~~~-~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~d 1068 (1255)
......+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|
T Consensus 326 --~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 326 --HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred --CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111233456899999999997533 579999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1069 ITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1069 i~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
+++++.+++|++|+|+||||++|+|||||||.++. +.+|+++++ +++++++.+++.++|+|+||.++|+|.+|
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~------~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEA------AARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHH------HHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 99999999999999999999999999999999754 478899998 99999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcC
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1227 (1255)
||||||||+||||++++|+|||||||||+||++|++.+.+.+++..+++|+|+||||++.+..||+|++|++|+++|.|+
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCChHHHHHHHH
Q 000845 1228 PKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1228 ~~eLl~~~~~~f~~l~~~ 1245 (1255)
|++|+++ ++.|++|++.
T Consensus 558 ~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 558 HAELIAK-GGLYARLARL 574 (576)
T ss_pred HHHHHHc-CChHHHHHhh
Confidence 9999985 8899998864
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=702.17 Aligned_cols=511 Identities=19% Similarity=0.250 Sum_probs=432.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHH
Q 000845 726 VIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAV 805 (1255)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~ 805 (1255)
+++++++.++..++.++..++....+.+...++|.++++++++.|++||++.++|++++|+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455556667777777888889999999999999999999999999999999999999999999877777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHH
Q 000845 806 GTTMAVISTFVVL-GALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERF 884 (1255)
Q Consensus 806 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~ 884 (1255)
..++..++.++++ ++++|.++++++..+++++.+...+.+..++..+......+.+.+.+.|+++|+.+||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7766666665555 578998888777666776677777777777667777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 885 FAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS-ALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQC 963 (1255)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~ 963 (1255)
.+++.+..++..+..........+..........+...++ .+...+...|.++.|.+..++.+...+..++..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887776665554444443333333222222211 222233456888999988888888889899988889999
Q ss_pred HHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCc
Q 000845 964 IVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSG 1043 (1255)
Q Consensus 964 ~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsG 1043 (1255)
.+.....+.+|+.++.+.+++.+. ...+.+ +..+.|+|+||+|+|+.+.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999876544221 111111 234689999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHh
Q 000845 1044 KTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEK 1122 (1255)
Q Consensus 1044 KSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~ 1122 (1255)
||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||+|++|+|||||||.++. +.+|+++++ +++.
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~------~~~~ 427 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEH------VARL 427 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHH------HHHH
Confidence 999999999999999999999999999999999999999999999999999999998763 578999998 9999
Q ss_pred ccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Q 000845 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVA 1202 (1255)
Q Consensus 1123 ~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~Ia 1202 (1255)
+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHHH
Q 000845 1203 HRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYWS 1248 (1255)
Q Consensus 1203 Hrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~~ 1248 (1255)
||++++..||+|++|++|+++|.|+|++|+++ ++.|+++++.+..
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 508 HRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred cchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 99999999999999999999999999999986 7899999986543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=697.18 Aligned_cols=543 Identities=21% Similarity=0.294 Sum_probs=443.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000845 692 LSTFAYLIFLVAQILQSLWIATYIPSTS--ISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA 769 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~ 769 (1255)
..+++.++..++.++.++.+++.++.-. .....++++++++.++..+..++...+......+...+++.++++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l 102 (585)
T TIGR01192 23 LIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISM 102 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455666666677777665544211 11112222222333333344444444555566666667778999999999
Q ss_pred CcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 770 PMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKE 849 (1255)
Q Consensus 770 p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~ 849 (1255)
|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++++++.+++++.++...+.+..++
T Consensus 103 ~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 182 (585)
T TIGR01192 103 PLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKN 182 (585)
T ss_pred CHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888888888888899999999988887777878888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000845 850 LMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS-ALCT 928 (1255)
Q Consensus 850 l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~~~~ 928 (1255)
..+......+.+.+++.|+++|+.+||+|+.++.+.+++.+..++..+..+.......+.......+..+...++ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 262 (585)
T TIGR01192 183 GQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGT 262 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999988888877666655443333333222223322222222 2223
Q ss_pred HHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCC-CCceEEEE
Q 000845 929 TLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWP-PTGKVEIY 1007 (1255)
Q Consensus 929 ~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p-~~g~I~~~ 1007 (1255)
.....|.++.|.+..++.+...+...+..+...+..+.....+.+|+.++.+.+++.... .. +..++ ..+.|+|+
T Consensus 263 ~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~~ 338 (585)
T TIGR01192 263 VLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---AD-APELPNVKGAVEFR 338 (585)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---cc-CCCCCCCCCeEEEE
Confidence 334578889999888888888888899888888988889999999999988765432211 11 11112 34679999
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccC
Q 000845 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087 (1255)
Q Consensus 1008 nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQd 1087 (1255)
||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++|||||
T Consensus 339 ~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 339 HITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred EEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 999999743 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC
Q 000845 1088 PTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166 (1255)
Q Consensus 1088 p~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ 1166 (1255)
|.+|++||||||.++. +.+|+++++ +++.+++++++.++|+|+||.++++|.+|||||||||+|||||+++|+
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~~~~~~~~------a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGATDEEVYE------AAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred CccCcccHHHHHhcCCCCCCHHHHHH------HHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999998763 578999998 999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1167 ILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1167 ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|+++++.+
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRS 570 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhC
Confidence 99999999999999999999999988889999999999999999999999999999999999999986 78999999865
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-74 Score=624.74 Aligned_cols=489 Identities=23% Similarity=0.346 Sum_probs=418.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHhH
Q 000845 745 FLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVL-GALTW 823 (1255)
Q Consensus 745 ~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~ 823 (1255)
.++...+..+.+.+-.+.|.++.+..+.|+-+..+|.+..-+..-..-++..+...+...+-.++-+....+++ ...+|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 45567778888899999999999999999999888877666666665666666666666666665554444443 45689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 824 QVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSF 903 (1255)
Q Consensus 824 ~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1255)
|++.+.+..+++|.++......-.-..+|.-.++.+..++.-.+++-+.+|+|.|+.|+.+..++.+.++.+.++.....
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99888877777766655444444445566667777788889999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC
Q 000845 904 TAREWLIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIP 982 (1255)
Q Consensus 904 ~~~~wl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~ 982 (1255)
....|+...-..+........... ...+..+.++.|.......+..++..+++.+-..+.++.+.....|+..+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 776676655444443333222222 2334568899999999999999999999999999999999999999999988776
Q ss_pred CCCcccccCCCCCCCCC-CCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCE
Q 000845 983 SEAPELVQKNSPAPDWP-PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061 (1255)
Q Consensus 983 ~e~~~~~~~~~~~~~~p-~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~ 1061 (1255)
.|.. +.+..++-|| ..|.|.|+||+|.|.+.. ++|+|+||++++|+++||||+||+||||+.++|+|||++++|.
T Consensus 244 ~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 244 AEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred hhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 5543 2333445564 468899999999998765 5999999999999999999999999999999999999999999
Q ss_pred EEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchh
Q 000845 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140 (1255)
Q Consensus 1062 I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v 1140 (1255)
|.|||+|+..+..+.+|+.||+||||.+||+.|+..|+...+ ..+++|++. |++.++++++|+++|+||||.|
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~a------aa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGA------AAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHH------HHHHhhhhHHHHhCchhhhccc
Confidence 999999999999999999999999999999999999999765 489999998 9999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCC
Q 000845 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDG 1220 (1255)
Q Consensus 1141 ~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 1220 (1255)
||.|-.||||||||++|||++|++|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.++|.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcChhHHhhcCChHHHHHHH
Q 000845 1221 KLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1221 ~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
+|+|.|+|+||+++ +|.|++||.
T Consensus 474 ~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 474 RIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999997 999999985
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=687.01 Aligned_cols=514 Identities=20% Similarity=0.244 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC-----CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 693 STFAYLIFLVAQILQSLWIATYIPST-----SIS-RLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSL 766 (1255)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~v 766 (1255)
.+++.++..++.++.++.+.+..+.. ... ...+++++++++++..++.+++.+.....+.+...++|.++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666554421 111 123344555666677788888999999999999999999999999
Q ss_pred hcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 767 FRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFAT 846 (1255)
Q Consensus 767 l~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 846 (1255)
++.|..+|++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.++++++..+++...+..++.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888899999999998877666655555555555666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000845 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATS-A 925 (1255)
Q Consensus 847 ~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~-~ 925 (1255)
.+...+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.......+..+...++ .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777889999999999999999999999999999988888777766655555555555554444333222 2
Q ss_pred HHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEE
Q 000845 926 LCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVE 1005 (1255)
Q Consensus 926 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~ 1005 (1255)
+..+....|.++.|.+..++.++..+..++..+...+..+.....+.+|+.++++.+++... .. +...+..+.|+
T Consensus 248 ~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~----~~-~~~~~~~~~i~ 322 (529)
T TIGR02857 248 YIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG----KA-PVTAAPAPSLE 322 (529)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----Cc-CCCCCCCCeEE
Confidence 22233336788888888888888888888998889999999999999999999875433211 11 11112346899
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 99999999765557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1086 QDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1086 Qdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|||++|+|||||||.... ..+|+++++ +++.++++++++++|+||||.+||+|.+||||||||++||||++++
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~------a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRR------ALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHH------HHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999998754 578999998 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEE
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSM 1217 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1217 (1255)
|+|+|||||||+||++|++.|++.+++..+++|+|+||||+++++.||+|+||
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=727.40 Aligned_cols=546 Identities=19% Similarity=0.241 Sum_probs=441.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000845 692 LSTFAYLIFLVAQILQSLWIATYIPST--SISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA 769 (1255)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~ 769 (1255)
+.+++.++..++..+.++.+...++.. ......+++.+++++++..++.+++.+++.+.+.+...++|.+++++++++
T Consensus 64 i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~ 143 (1466)
T PTZ00265 64 VSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ 143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 334444444455555555555444321 112234455666777788888999999999999999999999999999999
Q ss_pred CcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 770 PMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKE 849 (1255)
Q Consensus 770 p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~ 849 (1255)
|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.++++++.++++++++..++.+..+.
T Consensus 144 ~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~ 223 (1466)
T PTZ00265 144 DGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKI 223 (1466)
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888877777778777777
Q ss_pred HHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000845 850 LMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCT- 928 (1255)
Q Consensus 850 l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~- 928 (1255)
..+......+...+.+.|++.|+++||+|+.|+++.+++.+..+.+.+..........+......++..+..+++.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888999999999999999999999999999999888777776655444443333333333222222222222
Q ss_pred HHhccC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCC
Q 000845 929 TLLHKG--------HKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPP 1000 (1255)
Q Consensus 929 ~~~~~~--------~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 1000 (1255)
.+...+ ..++|.+..++.+.+.....+..+...+..+.....|.+|+.++++.+++.+.. .. ....|.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccCCC
Confidence 122222 344444333333333323333445556777888899999999999876543211 11 111223
Q ss_pred CceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEE-cCEeCCCCChHHhh
Q 000845 1001 TGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII-DGLDITTIGLYDLR 1078 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~i-dG~di~~i~~~~lR 1078 (1255)
.+.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++ ||.|+++++..++|
T Consensus 380 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 380 IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 3579999999999743 236999999999999999999999999999999999999999999999 57999999999999
Q ss_pred cccEEEccCCccCCCchhhhcccCC-------------------------------------------------------
Q 000845 1079 SNLGIIPQDPTLFSGSVRYNLDPLS------------------------------------------------------- 1103 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~gTIr~Nl~~~~------------------------------------------------------- 1103 (1255)
++|+||||+|.||++||+|||.+..
T Consensus 460 ~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred HhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 9999999999999999999997531
Q ss_pred ---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHH
Q 000845 1104 ---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180 (1255)
Q Consensus 1104 ---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~ 1180 (1255)
..+|+++++ +++.+++++++.++|+||||.++++|.+|||||||||+||||++++|+|||||||||+||++
T Consensus 540 ~~~~~~~~~v~~------a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 540 NYQTIKDSEVVD------VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred ccccCCHHHHHH------HHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 246678887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCC--------------------------------------
Q 000845 1181 TDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDG-------------------------------------- 1220 (1255)
Q Consensus 1181 te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G-------------------------------------- 1220 (1255)
+++.|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999875 479999999999999999999999986
Q ss_pred ---------EEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1221 ---------KLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1221 ---------~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+|+|+|+|+||+++.+|.|+.|++.+.
T Consensus 694 ~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 694 NNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999866899999997653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=667.15 Aligned_cols=524 Identities=19% Similarity=0.231 Sum_probs=425.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC----CCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000845 693 STFAYLIFLVAQILQSLWIATYIPS----TSISR-LKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF 767 (1255)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl 767 (1255)
.+++.++..++.++.++.+....+. ..... ..++++++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666667766654432 11111 223444555556667788888899999999999999999999999
Q ss_pred cCCcccccccccchhHHHHhchhhHhhhHhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 768 RAPMAFYDSTPVGRILSRVSSDLSIIDLDLSI-KSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFAT 846 (1255)
Q Consensus 768 ~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 846 (1255)
+.|+. ..+...+++++|++.+...+.. .+..++..++.++ .++++++.+|+++++++..+++++.+..++.+.
T Consensus 91 ~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99984 3367789999999999987766 4455555545444 446778889998876665555555555555666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000845 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLAT-SA 925 (1255)
Q Consensus 847 ~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~ 925 (1255)
.++..+...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+..........+.......+..+...+ ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778888999999999999999999999999999988888877666554444443333333333322222 22
Q ss_pred HHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEE
Q 000845 926 LCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVE 1005 (1255)
Q Consensus 926 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~ 1005 (1255)
+...+...|.+++|.+..++.+...+..++..+...+..+.....+.+|+.++++.+++... ... .+ +..+.|+
T Consensus 245 ~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~-~~--~~~~~i~ 318 (544)
T TIGR01842 245 LGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMP-LP--EPEGHLS 318 (544)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCC-CC--CCCCeEE
Confidence 22334457889999999999999999999999999999999999999999999976554321 111 11 2346899
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
++||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|++++|||
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999765567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1086 QDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1086 Qdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|+|++|++|+|||+..++ +.+++++++ +++.++++++++++|+|+||.++|+|.+||||||||++||||++++
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~------~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIE------AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHH------HHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998654 488999998 9999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999875 57999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=646.42 Aligned_cols=533 Identities=15% Similarity=0.143 Sum_probs=409.7
Q ss_pred hhHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 675 KPYIDYLS-HKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIGIGMMFLLLTRSFLVVYLGLE 753 (1255)
Q Consensus 675 ~~~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1255)
+..++|++ ..++. +.+.+++.++..+..++.++.+..+.+.........+..++++.++..++.++..++....+.+
T Consensus 6 ~~l~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (555)
T TIGR01194 6 GEILALLRSPFPAI--TAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMH 83 (555)
T ss_pred HHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 33322 2233334445555556666666644432211111123334455556667788888888999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000845 754 ASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMI 833 (1255)
Q Consensus 754 ~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 833 (1255)
...++|.++++++++.|+.||++.++|++++|+++|++.++..+. .+..++..++.+++.++++++.+|.++++++.++
T Consensus 84 ~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~ 162 (555)
T TIGR01194 84 IIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI 162 (555)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875 4777778888888888999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 834 YLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEE--RFFAKNLDLIDAYASSFFHSFTAREWLIQ 911 (1255)
Q Consensus 834 ~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 911 (1255)
++.+++..++.+..++..+...+..+.+.+.+.|.+.|++++|+|+.++ ...+++.+..++..+..............
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665655555555555566666777889999999999999999999954 44556666555555544332222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccc--
Q 000845 912 RLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELV-- 989 (1255)
Q Consensus 912 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~-- 989 (1255)
....+..+...+..++. ...+.++.|.+..++.+...+..++..+...+..+.....+.+|+.++.+.+.+++...
T Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~ 320 (555)
T TIGR01194 243 FGQLLFFLLIGCALFAA--AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320 (555)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 11222111111111111 11257788888888888889999999999999999999999999999976422211110
Q ss_pred cC-CCC--CCCCCCCceEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEE
Q 000845 990 QK-NSP--APDWPPTGKVEIYDLQIRYRPN---APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063 (1255)
Q Consensus 990 ~~-~~~--~~~~p~~g~I~~~nvs~~Y~~~---~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~ 1063 (1255)
.. ... .+.....+.|+|+||+|+|++. .+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred cccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 00 000 0111234689999999999643 23699999999999999999999999999999999999999999999
Q ss_pred EcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC
Q 000845 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1064 idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~ 1143 (1255)
+||+|+++++.+++|+++++|||||++|++|+++|+. .+.+++++++ +++.+++++++..+|+|+||.
T Consensus 401 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~------~~~~~~l~~~~~~lp~g~~t~---- 468 (555)
T TIGR01194 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQ------YLQRLEIADKVKIEDGGFSTT---- 468 (555)
T ss_pred ECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHH------HHHHcCCchhhcccccccCCc----
Confidence 9999999999999999999999999999999999974 3567888888 999999999999999999995
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHH-H-cCCcEEEEeccCchhhhhcCEEEEEeCCE
Q 000845 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR-E-FANCTVITVAHRIATVMDCNMVLSMSDGK 1221 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~-~-~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1221 (1255)
.+|||||||||+||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+
T Consensus 469 -~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 469 -TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999887643 3 36899999999999999999999999999
Q ss_pred EEEE
Q 000845 1222 LVEY 1225 (1255)
Q Consensus 1222 ive~ 1225 (1255)
++|.
T Consensus 548 i~~~ 551 (555)
T TIGR01194 548 IVKD 551 (555)
T ss_pred EEEe
Confidence 9975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=605.43 Aligned_cols=496 Identities=21% Similarity=0.261 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 121 LISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEG-EIIF---KYEIYSLAISLFLVKCVESLAGRHWFFQSRLTG 196 (1255)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1255)
+.+..|+.+..+.++.++.......-|.+++++++.+.. .+.. ......+++..++..+..++-..++.+...|+.
T Consensus 141 l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~ 220 (716)
T KOG0058|consen 141 LLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVV 220 (716)
T ss_pred HhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888889999999999999999999999998876 2221 111222222233333333333445555566666
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Q 000845 197 LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATL 274 (1255)
Q Consensus 197 ~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~ 274 (1255)
.++|..+ |++.++....-.+++.+|++++.++.|++-+.+.+. ++....-..++...++.++.. +.| .+++.+
T Consensus 221 ~rlR~~l----F~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~-~S~~Ltlv~~ 295 (716)
T KOG0058|consen 221 ARLRTDL----FRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS-LSWRLTLVTL 295 (716)
T ss_pred HHHHHHH----HHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hhHHHHHHHH
Confidence 6666555 555555555556778899999999999999988654 566666677778877777653 456 667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 275 IVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 354 (1255)
+++++++.+..+++++..+..++...+..+-.+..+|.|++||+|++|+-|+...+|..+.=++-++..+|..+..++..
T Consensus 296 i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~ 375 (716)
T KOG0058|consen 296 IVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFF 375 (716)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 88888888888889999999999999999999999999999999999999998888877644433443344333333222
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 000845 355 VL--FWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432 (1255)
Q Consensus 355 ~~--~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 432 (1255)
.. +......++++.+|.|...++.+|++...+.+.+-..+..++..+...++.++++..+.+|+.++++.++.-+..-
T Consensus 376 ~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G 455 (716)
T KOG0058|consen 376 GSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG 455 (716)
T ss_pred hHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC
Confidence 22 1112245666778888888899999999999988888889999999999999999999999999999865433221
Q ss_pred hcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------
Q 000845 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------- 502 (1255)
Q Consensus 433 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------- 502 (1255)
...|. ..++.|+|+|++|+||.+++.|+|+|+||+|+|||.||+|||+||||||+.++|+++|+|++|
T Consensus 456 ~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 456 TLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred ccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 11221 267899999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHH
Q 000845 503 ---------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRI 531 (1255)
Q Consensus 503 ---------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRI 531 (1255)
..|..+|+|++|.|||+|..|||||||||
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 35778999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 532 aLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
||||||++||.||||||+|||||++++ +++++++...++++|||+|+||++++++||+|+|+++|+++|.|+|+|+++.
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE-~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESE-YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhH-HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 999999999999999999999999995 6779999999999999999999999999999999999999999999999987
Q ss_pred c-hHHHHHHHHhhh
Q 000845 612 S-QEFQDLVNAHKE 624 (1255)
Q Consensus 612 ~-~~~~~l~~~~~~ 624 (1255)
. +.|.++++.+..
T Consensus 693 ~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 693 PNGLYAKLVQRQLD 706 (716)
T ss_pred cccHHHHHHHHhcc
Confidence 6 689999876543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=606.84 Aligned_cols=227 Identities=26% Similarity=0.395 Sum_probs=188.8
Q ss_pred eEEEEEEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEe--CCC
Q 000845 1003 KVEIYDLQIRYRP---------NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD--ITT 1071 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~d--i~~ 1071 (1255)
-++++|++.+|.. +...+++||||++++||++||||.||||||||.++|+|+++|++|+|.++|.| .+.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 5889999999963 12468999999999999999999999999999999999999999999999977 333
Q ss_pred CChHHhhcccEEEccCCcc--C-CCchhhhcc-cCC---CCCh----HHHHhccCchhHHHhccHHH-HHHhhhcCccch
Q 000845 1072 IGLYDLRSNLGIIPQDPTL--F-SGSVRYNLD-PLS---QFTD----QEIWEVTIPSQVLEKCQLRE-VIQEKKEGLDSL 1139 (1255)
Q Consensus 1072 i~~~~lR~~i~~vpQdp~L--f-~gTIr~Nl~-~~~---~~sd----~ei~~~~~~~~al~~~~l~~-~i~~lp~gldt~ 1139 (1255)
-....+|+++-+|+|||+- - ..||+++|. |.. .... +.+-+ .++.++|.+ +....
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~------ll~~VgL~~~~l~ry------- 426 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAE------LLELVGLPPEFLDRY------- 426 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHH------HHHHcCCCHHHHhcC-------
Confidence 3345678899999999973 2 359999985 322 1111 12333 577777754 33333
Q ss_pred hcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEE
Q 000845 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLS 1216 (1255)
Q Consensus 1140 v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~v 1216 (1255)
...||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+..+ +.|.|+|||+++.++. ||||+|
T Consensus 427 ----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 427 ----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred ----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEE
Confidence 457999999999999999999999999999999999999999999987653 6899999999999988 999999
Q ss_pred EeCCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1217 MSDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1217 l~~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
|++|+|||.|+.++..+++...|.+.+-+.
T Consensus 503 m~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 503 MYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred EECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 999999999999999999888888766543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-64 Score=672.83 Aligned_cols=474 Identities=18% Similarity=0.214 Sum_probs=378.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 748 VYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLL 827 (1255)
Q Consensus 748 ~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 827 (1255)
...+.+....++..+++++++.|..++++.++|+++||+++|++.++... ..+..++...+.++++++++...-.+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56777888888889999999999999999999999999999999999875 44444544444444444433221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 828 VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907 (1255)
Q Consensus 828 ~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1255)
+.++++++++.+..++.+..++.++...+.+....+.+.|.++|+++||+|++|+.+.+++.+..++..+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233333455566666777777777888899999999999999999999999999998877776665544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 908 WLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 908 wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
+.......... ++.+..+.......+.++++.+-.++++...+..++..+...+..+.....|.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~-~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIPV-VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 33222211111 11112222233346778888888888888888888888888999999999999999999976543211
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG 1066 (1255)
. .++ ..+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 111 11234579999999999753 45799999999999999999999999999999999999999999763
Q ss_pred EeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1067 LDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1067 ~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
.+|++|+||||+|+||+|||||||.++.+++++++++ +++.|++.++++.+|+|+||.|||+|.+
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~------vl~~~~L~~di~~Lp~Gd~T~IGe~G~~ 740 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWR------AIDVTALQHDLDLLPGRDLTEIGERGVN 740 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHH------HHHHhCCHHHHHhCCCCCCceecCCCcc
Confidence 3688999999999999999999999887888899988 9999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHH-HHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ-NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~-~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1225 (1255)
||||||||||||||++++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+|+|.
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999774 557767789999999999999999999999999999999
Q ss_pred cChhHHhhcCChHHHHHHHHHH
Q 000845 1226 DEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1226 G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
|+|+||+++ ++.|+++++.++
T Consensus 821 Gt~~eL~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 821 GTFAELSKS-GSLFKKLMENAG 841 (1495)
T ss_pred cCHHHHHhc-chhHHHHHHhcc
Confidence 999999985 789999987654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=669.98 Aligned_cols=473 Identities=18% Similarity=0.219 Sum_probs=380.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 748 VYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLL 827 (1255)
Q Consensus 748 ~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 827 (1255)
...+.+....++..+++++++.|..++++.++|+++|++++|++.++... ..+..++...+.++++++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888889999999999999999999999999999999999876 34555555555555555544432222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 828 VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTARE 907 (1255)
Q Consensus 828 ~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1255)
+.++++++++.+..++.+..++.++..........+.+.|.++|+++||+|++|+.|.+++.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344455556666666777777777888899999999999999999999999999998877776554433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc
Q 000845 908 WLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE 987 (1255)
Q Consensus 908 wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~ 987 (1255)
+.......... ++.+..+..+....+.++++.+-.++++...+..++..+...+..+.....+.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 22222111111 11122222333446778888888888888888888888888899999999999999999876543211
Q ss_pred cccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-CEEEEc
Q 000845 988 LVQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG-GKIIID 1065 (1255)
Q Consensus 988 ~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~-G~I~id 1065 (1255)
. .++ .-+..+.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||||||||+++|+|+++|++ |+|.
T Consensus 604 ~----~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-- 676 (1622)
T PLN03130 604 P----NPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-- 676 (1622)
T ss_pred c----CCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE--
Confidence 0 011 01223579999999999743 3579999999999999999999999999999999999999999 8997
Q ss_pred CEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1066 GLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1066 G~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
+|++|+||||+|+||+|||||||.++.+++++++++ +++.|+|+++++.+|+|+||.|||+|.
T Consensus 677 -----------l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~------vl~a~~L~~di~~LP~Gd~T~IGe~G~ 739 (1622)
T PLN03130 677 -----------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYER------AIDVTALQHDLDLLPGGDLTEIGERGV 739 (1622)
T ss_pred -----------EcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHH------HHHHhCcHHHHHhCCCcccccccCCCC
Confidence 477899999999999999999999888888888888 999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHH-HHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL-QNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i-~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 1224 (1255)
+|||||||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999876 567777778999999999999999999999999999999
Q ss_pred EcChhHHhhcCChHHHHHHHHHH
Q 000845 1225 YDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1225 ~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+|+|+||+++ ++.|+++++..+
T Consensus 820 ~Gt~~eL~~~-~~~~~~l~~~~~ 841 (1622)
T PLN03130 820 EGTYEELSNN-GPLFQKLMENAG 841 (1622)
T ss_pred eCCHHHHHhc-chhHHHHHHhcc
Confidence 9999999975 788999987654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=612.36 Aligned_cols=475 Identities=18% Similarity=0.197 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHH
Q 000845 732 IGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAV 811 (1255)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~ 811 (1255)
+.++..++.++..++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~ 135 (547)
T PRK10522 57 LLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILT 135 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333445667788888899999999999999999999999999999999999999999999987654 567778888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcH---HHHHHHH
Q 000845 812 ISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNE---ERFFAKN 888 (1255)
Q Consensus 812 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~---~~~~~~~ 888 (1255)
++.++++++++|.+++++++.+++.+++..++.+..+...+...+..+.+.+++.|.++|+.+++ ++.+ +.+.+++
T Consensus 136 i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~ 214 (547)
T PRK10522 136 LGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEY 214 (547)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHH
Confidence 99999999999999988777777766666666666666666667788899999999999999995 5443 3456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000845 889 LDLIDAYASSFFHSFTAREWLIQRLETLSAIVL-ATSALCTTLL-HKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVG 966 (1255)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~ 966 (1255)
.+..++..+....... +......+..++. .+..++.+.. ..+....+..+....+...+..++..+...+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~ 290 (547)
T PRK10522 215 EPDAQEYRHHIIRADT----FHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLL 290 (547)
T ss_pred hHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555443332221 1111111111111 1111111111 01112233333333344445677888888888899
Q ss_pred hhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHH
Q 000845 967 NLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTT 1046 (1255)
Q Consensus 967 ~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKST 1046 (1255)
....+.+|+.++.+.+.+++.. ...+ -|..+.|+|+||+|+|+. .+++|+|+||+|+|||++||||||||||||
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~~--~~~~---~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKST 364 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEFP--RPQA---FPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKST 364 (547)
T ss_pred HHHHHHHHHHHHhccccccccc--cccc---cCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999987654332111 1111 112357999999999974 346999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHH
Q 000845 1047 LISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLR 1126 (1255)
Q Consensus 1047 Ll~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~ 1126 (1255)
|+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|+||+++| ....+++++++ +++++++.
T Consensus 365 L~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~------~~~~~~l~ 435 (547)
T PRK10522 365 LAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEK------WLERLKMA 435 (547)
T ss_pred HHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHH------HHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999 23566777776 88888877
Q ss_pred HHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccC
Q 000845 1127 EVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHR 1204 (1255)
Q Consensus 1127 ~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHr 1204 (1255)
+.+.. ++|. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||
T Consensus 436 ~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~ 509 (547)
T PRK10522 436 HKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509 (547)
T ss_pred hhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 66542 3332 1478999999999999999999999999999999999999999999987654 47999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEE-cChhHHhh
Q 000845 1205 IATVMDCNMVLSMSDGKLVEY-DEPKKLLR 1233 (1255)
Q Consensus 1205 l~ti~~~DrI~vl~~G~ive~-G~~~eLl~ 1233 (1255)
++++..||+|++|++|+++|. |++.+-+.
T Consensus 510 ~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 510 DHYFIHADRLLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred hHHHHhCCEEEEEECCEEEEecCCchhhhh
Confidence 999999999999999999998 55554443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=609.55 Aligned_cols=499 Identities=22% Similarity=0.245 Sum_probs=389.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 116 SILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLT 195 (1255)
Q Consensus 116 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1255)
..++...+.+++.++.+.++.++..++..+.|++++++++.+..++......+.++++++++.++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788889999999999999999999999999997642211122233344455566666777777777788889
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHH
Q 000845 196 GLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIAT 273 (1255)
Q Consensus 196 ~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g 273 (1255)
+.++...+...+|+|.++++.....+.++|++.|.+++|++++.+.+. .+..++...+..+++++++++ ++| .+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999998888888999999999999999998764 455666555555555554443 344 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000845 274 LIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVI----EKLRSEEYGWLKVLQLQ 349 (1255)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i----~~~R~~El~~~~~~~~~ 349 (1255)
++++++...+..++.++.++..++.++..++..+.+.|.++|+++||.|+||+.+.+++ ++.|+.+++..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566678888888999999999999999999999999999999999888876 45666665555544434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 350 KGYYMVLFWSSPILIGAATLLTCYFLGIPLN---------PSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIAN 420 (1255)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~---------~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~ 420 (1255)
..+..++... +.+ .++.++.+.+. +.++ +..+|.++.+...+..|+..++..+..+.++++|++||.+
T Consensus 250 ~~~~~~~~~~-~~~-~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SIA-LVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HHH-HHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322221 111 12223333333 3333 3445555566777889999999999999999999999999
Q ss_pred HhcCCCCCCcchhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCC
Q 000845 421 FLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRL 500 (1255)
Q Consensus 421 fL~~~e~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~ 500 (1255)
+++.|+.+..... .+...+..+.|+++|++|.|+.+ +++|+|+||++++|++++|||++|||||||+++|+|++ |.
T Consensus 327 ~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 327 FLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 9987653221111 00010123469999999877643 47999999999999999999999999999999999999 88
Q ss_pred CC-------------------------------------------------------------cccCCCCCCCccccccC
Q 000845 501 QG-------------------------------------------------------------MDLKMLPFGDLTQIGER 519 (1255)
Q Consensus 501 ~G-------------------------------------------------------------~Di~~lp~gd~T~iGe~ 519 (1255)
+| +++..+|+|++|.|||+
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 88 35778999999999999
Q ss_pred CCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEE
Q 000845 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEI 599 (1255)
Q Consensus 520 G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i 599 (1255)
|.+|||||||||+||||++++|+|+||||||||||+++++.|.+ .+..+.++||+|+||||++.++.||+|++|++|++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999998864 66777789999999999999999999999999999
Q ss_pred EEecChhHHhhcchHHHHHHHHhh
Q 000845 600 IQAATYDHLLVTSQEFQDLVNAHK 623 (1255)
Q Consensus 600 ~~~G~~~el~~~~~~~~~l~~~~~ 623 (1255)
+++|+|+|++++++.|.+++..+.
T Consensus 562 ~e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 562 VQQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred eecCCHHHHHhcchHHHHHHHHhh
Confidence 999999999998888988876543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=589.92 Aligned_cols=503 Identities=24% Similarity=0.306 Sum_probs=423.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 114 HPSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSR 193 (1255)
Q Consensus 114 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1255)
..+.++..++-+++.+.-..+..++..++.++.|++.+.++|.+--.. ....-+.+++++.+..+...++...-.|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA-SRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666678888888888899999999999999999999875332 2344556677777778888877777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 194 LTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW-FHQIWSTSLQLCIAVVVVYYSVGLATIA 272 (1255)
Q Consensus 194 ~~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~v~~~lL~~~lG~~~l~ 272 (1255)
+++.|+...+...+|++.++++.....++++|++++.++ |.++|.+++.. +.....-.+..++.+.+++++-++.+++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888899999999976 58888887653 2233322233444445555555668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 273 TLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY 352 (1255)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~ 352 (1255)
+++.+++.+.+..++.+.+++..++.+....++-+...|.++||++||..+-|+.+..+.++.=.+.++...+.......
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999988777777666655555544
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 000845 353 YMVLFWSSPIL--IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS 430 (1255)
Q Consensus 353 ~~~~~~~~~~~--~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 430 (1255)
..........+ +.+++||++.+..+.+|.+..+++..+.+.+..|+..+......+.+++++.+|+.+.++.|.-++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 44332222222 5567899999999999999999999999999999999999999999999999999999998754322
Q ss_pred chhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------
Q 000845 431 DMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------- 502 (1255)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------- 502 (1255)
...... ..+.++.|+++|++|+|..+++ ++|+|+||+|++||.++|||++|||||||+++|+|.++|.+|
T Consensus 459 ~~~~~~-~~~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 459 DKTLIH-LPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred cccccc-ccccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 211011 1126789999999999998754 899999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------cccCCCCCCCccccccCCCcCChHHHH
Q 000845 503 -----------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQ 529 (1255)
Q Consensus 503 -----------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkq 529 (1255)
+++..+|.|++|.|||+|.+|||||||
T Consensus 537 l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 468899999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHh
Q 000845 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 530 RIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
|++||||++++|+|+||||||||||+++++.|.+++ .....|||+|+||||++.+++||+|+||++|+|+++|+|+|++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 999999999999999999999999999998887664 5667899999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHH
Q 000845 610 VTSQEFQDLVNA 621 (1255)
Q Consensus 610 ~~~~~~~~l~~~ 621 (1255)
+..+.|.+++..
T Consensus 696 ~~~g~y~~l~~~ 707 (709)
T COG2274 696 AQGGLYARLYQQ 707 (709)
T ss_pred HhcChHHHHHhc
Confidence 988888887654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=617.50 Aligned_cols=230 Identities=25% Similarity=0.344 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC
Q 000845 1003 KVEIYDLQIRYRPN---------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~ 1073 (1255)
-++++||+++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 59999999999521 135999999999999999999999999999999999999999999999999998776
Q ss_pred hH---HhhcccEEEccCCc--cCC-Cchhhhccc-C---CCCChHHHHhccCchhHHHhccHH-HHHHhhhcCccchhcC
Q 000845 1074 LY---DLRSNLGIIPQDPT--LFS-GSVRYNLDP-L---SQFTDQEIWEVTIPSQVLEKCQLR-EVIQEKKEGLDSLVVQ 1142 (1255)
Q Consensus 1074 ~~---~lR~~i~~vpQdp~--Lf~-gTIr~Nl~~-~---~~~sd~ei~~~~~~~~al~~~~l~-~~i~~lp~gldt~v~e 1142 (1255)
.. .+|++|+||||+|. ++. -|+++|+.. . +....++..+ ...++++.+++. +....
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~L~~~gL~~~~~~~----------- 459 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAA--RVAWLLERVGLLPEHAWR----------- 459 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHcCCCHHHhhC-----------
Confidence 43 35778999999983 665 499999852 1 1111211111 001256666663 23222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeC
Q 000845 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSD 1219 (1255)
Q Consensus 1143 ~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~ 1219 (1255)
....||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999987643 6899999999999976 999999999
Q ss_pred CEEEEEcChhHHhhcCChHHHH-HHHH
Q 000845 1220 GKLVEYDEPKKLLRRQDSLFAQ-LVKE 1245 (1255)
Q Consensus 1220 G~ive~G~~~eLl~~~~~~f~~-l~~~ 1245 (1255)
|+|+|.|+++++..++...|.+ ++..
T Consensus 540 G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 540 GQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred CEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9999999999998776555544 5543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=540.75 Aligned_cols=521 Identities=21% Similarity=0.240 Sum_probs=398.5
Q ss_pred HHHHHHHHHHHHHHhhhcC----CCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000845 698 LIFLVAQILQSLWIATYIP----STSISRLKLVIV-YSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMA 772 (1255)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~ 772 (1255)
.+..++....++|+-...| ..+..+..++.+ ..++.++..++-.+|+.++.+++.+.-.++...+|...+++|..
T Consensus 33 ~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~ 112 (580)
T COG4618 33 AVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLL 112 (580)
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHh
Confidence 3344444555555443322 233333333333 33455666788889999999999999999999999999877765
Q ss_pred cccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 773 FYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMR 852 (1255)
Q Consensus 773 ~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~ 852 (1255)
--...+....+ +|.+.+..++...-...+...-.+-..+.+++.+.||+.++.+...++++.+...-...+++--+
T Consensus 113 ~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~ 188 (580)
T COG4618 113 RRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK 188 (580)
T ss_pred hcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 33322223333 46667776665533333322223344566777888998887777666666666665666666666
Q ss_pred HHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 000845 853 INGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAI-VLATSALCTTLL 931 (1255)
Q Consensus 853 ~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~-~~~~~~~~~~~~ 931 (1255)
...+....-+.+..-+.++.++|+|.|+.....+++.+....+....-...-.+.-++.....+=.+ -..+..+.+++.
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 6777777888899999999999999999988877776655555443332222221111111111100 011222334455
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEE
Q 000845 932 HKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQI 1011 (1255)
Q Consensus 932 ~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~ 1011 (1255)
..+++++|.+...-........++-..+..|..+.....|..|++++++..++.....+ -| - .+|.+.++++++
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP---~-P~g~L~Ve~l~~ 342 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMP--LP---A-PQGALSVERLTA 342 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCC--CC---C-CCceeeEeeeee
Confidence 67888888766554455556677888899999999999999999999876544322111 11 1 268999999999
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccC
Q 000845 1012 RYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLF 1091 (1255)
Q Consensus 1012 ~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf 1091 (1255)
.=|+...++|+|+||+++|||-+|||||||||||||.++|.|..+|.+|+|.+||-|+++.+.+++-++|||.|||-.||
T Consensus 343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 65555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEE
Q 000845 1092 SGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170 (1255)
Q Consensus 1092 ~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiL 1170 (1255)
+|||+|||.-++ +.+++.|.+ |.+.++.||.|..+|+||||.+||+|..|||||||||+||||+..+|.+++|
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIie------AA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIE------AARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHH------HHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 999999998666 677788998 9999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1171 DEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1171 DE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||-|+||.+-|+.+.++|.+.. +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999998765 68999999999999999999999999999999999998875
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=610.66 Aligned_cols=217 Identities=24% Similarity=0.440 Sum_probs=178.7
Q ss_pred eEEEEEEEEEeCC---------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC
Q 000845 1003 KVEIYDLQIRYRP---------NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~---------~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~ 1073 (1255)
-|+++|++++|+. +...+|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|++||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 4899999999952 13469999999999999999999999999999999999985 8999999999998776
Q ss_pred hHH---hhcccEEEccCC--ccCC-CchhhhcccC---C--CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccc
Q 000845 1074 LYD---LRSNLGIIPQDP--TLFS-GSVRYNLDPL---S--QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1074 ~~~---lR~~i~~vpQdp--~Lf~-gTIr~Nl~~~---~--~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
... +|++++||||+| .+|. .|+++|+... . .... +.+.+ +++..++.+ .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~----------~ 417 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA------VMEEVGLDP----------E 417 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHH------HHHHcCCCH----------H
Confidence 543 477899999998 3666 4999999631 1 0111 11222 455555531 1
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVL 1215 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~ 1215 (1255)
.......+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|+
T Consensus 418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~ 497 (529)
T PRK15134 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497 (529)
T ss_pred HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE
Confidence 1222335799999999999999999999999999999999999999999999764 37899999999999876 99999
Q ss_pred EEeCCEEEEEcChhHHhhcCC
Q 000845 1216 SMSDGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1216 vl~~G~ive~G~~~eLl~~~~ 1236 (1255)
+|++|+|++.|++++++..+.
T Consensus 498 ~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 498 VLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred EEECCEEEEEcCHHHHhcCCC
Confidence 999999999999999987543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=527.67 Aligned_cols=224 Identities=28% Similarity=0.474 Sum_probs=184.3
Q ss_pred eEEEEEEEEEeCCC---------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC
Q 000845 1003 KVEIYDLQIRYRPN---------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~---------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~ 1073 (1255)
-++.+||.+.|+-. .-.+.++|||++++||.+||||.||||||||-.+|+|+.++. |+|.++|.||...+
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 57888888888421 124899999999999999999999999999999999999876 99999999999988
Q ss_pred hHH---hhcccEEEccCCc--cCC-Cchhhhcc----cCC-CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccc
Q 000845 1074 LYD---LRSNLGIIPQDPT--LFS-GSVRYNLD----PLS-QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1074 ~~~---lR~~i~~vpQdp~--Lf~-gTIr~Nl~----~~~-~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
.+. +|+++-+|+|||+ |=+ -||-+-|. ... ..++ +.+.+ ||+.+||+.-...
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~------aL~EVGLDp~~r~------- 421 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIE------ALEEVGLDPATRN------- 421 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHH------HHHHcCCChhHhh-------
Confidence 776 6899999999997 211 24443332 111 2333 33444 8888888654332
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVL 1215 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~ 1215 (1255)
.-...||||||||||||||++-+|++++||||||+||..-...|.+.+++.-+ +-+-++|+|+|..++. ||+|+
T Consensus 422 ---RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi 498 (534)
T COG4172 422 ---RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498 (534)
T ss_pred ---cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE
Confidence 12356999999999999999999999999999999999999999999987653 5699999999999987 99999
Q ss_pred EEeCCEEEEEcChhHHhhcCChHHHHHH
Q 000845 1216 SMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1216 vl~~G~ive~G~~~eLl~~~~~~f~~l~ 1243 (1255)
||.+|+|||+|+.+++.++|...|.+-+
T Consensus 499 Vm~~GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 499 VMRDGKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred EEeCCEEeeeCCHHHHhcCCCcHHHHHH
Confidence 9999999999999999999988886543
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-59 Score=594.11 Aligned_cols=497 Identities=19% Similarity=0.226 Sum_probs=403.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 117 ILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTG 196 (1255)
Q Consensus 117 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1255)
.++..++.+++.++...+..++..++.++.|++++.+++.+-.... ....+.++++++++.++..++.....+...+++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777888888889999999999999999987653322 222334455555566666666666777888899
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000845 197 LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATLI 275 (1255)
Q Consensus 197 ~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~ 275 (1255)
.++...+...+|+|.++++.....+.++|+++|.++.| +.+.+++. .+..+....+.+++.+++++..-++.+++.++
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 301 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIA 301 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877888999999999998 67877654 44445555555666666666554556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 276 VMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMV 355 (1255)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 355 (1255)
.+++.+.+..++.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++..+...++.+...+..........
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (710)
T TIGR03796 302 FAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGV 381 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888899999999999999999999999999999999999999999998888777766555554443332
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch-
Q 000845 356 LFWSSPI--LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM- 432 (1255)
Q Consensus 356 ~~~~~~~--~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~- 432 (1255)
+...... .+.+++++.+.+..+.+|.+.++++..++..+..|+..++..+..+.++.++++|+.++++.|+..+...
T Consensus 382 ~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 461 (710)
T TIGR03796 382 LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEE 461 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 2344567777778889999999999999999999999999999999999999999999998754322111
Q ss_pred ---hccccc-ccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------
Q 000845 433 ---QQVCSR-AELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------ 502 (1255)
Q Consensus 433 ---~~~~~~-~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------ 502 (1255)
...... .+..+.|+++|++|+|+... +++|+|+||+|++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 462 ~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 540 (710)
T TIGR03796 462 EAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540 (710)
T ss_pred cccccccccCCCCCCeEEEEEEEEecCCCC-CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 000000 11346799999999998643 5899999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------cccCCCCCCCccccccCCCcCChHH
Q 000845 503 -------------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQ 527 (1255)
Q Consensus 503 -------------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQ 527 (1255)
+++..+|+|++|.+||+|.+|||||
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 2467899999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhH
Q 000845 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDH 607 (1255)
Q Consensus 528 kqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~e 607 (1255)
||||+||||++++|+|+||||||||||+++++.+++.+.. .++|+|+||||++.++.||+|++|++|++++.|+|+|
T Consensus 621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999876543 5899999999999999999999999999999999999
Q ss_pred HhhcchHHHHHH
Q 000845 608 LLVTSQEFQDLV 619 (1255)
Q Consensus 608 l~~~~~~~~~l~ 619 (1255)
+++.++.|.+++
T Consensus 698 Ll~~~~~y~~l~ 709 (710)
T TIGR03796 698 LWAVGGAYARLI 709 (710)
T ss_pred HHHcCCcHHHHh
Confidence 998877777664
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=596.98 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=175.3
Q ss_pred eEEEEEEEEEeCC---CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEc-CE---eCCCCC--
Q 000845 1003 KVEIYDLQIRYRP---NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID-GL---DITTIG-- 1073 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~---~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~id-G~---di~~i~-- 1073 (1255)
-++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 23469999999999999999999999999999999999999999999996 64 334333
Q ss_pred -hHHhhcccEEEccCCccCCC-chhhhcccC-C-CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1074 -LYDLRSNLGIIPQDPTLFSG-SVRYNLDPL-S-QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1074 -~~~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~-~-~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
...+|++|+|+||++.+|.. |+++|+... . .... +++.+ +++.+++.+.- .+........
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~------~~~~~~~~~~ 426 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVI------TLKMVGFDEEK------AEEILDKYPD 426 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHH------HHHhCCCCCcc------chhhhhCChh
Confidence 23467789999999988875 999999631 1 1111 11222 45555553200 0001122335
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
.||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999998764 27899999999999976 999999999999
Q ss_pred EEEcChhHHhh
Q 000845 1223 VEYDEPKKLLR 1233 (1255)
Q Consensus 1223 ve~G~~~eLl~ 1233 (1255)
++.|+++++.+
T Consensus 507 ~~~g~~~~~~~ 517 (520)
T TIGR03269 507 VKIGDPEEIVE 517 (520)
T ss_pred EEECCHHHHHh
Confidence 99999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=587.23 Aligned_cols=490 Identities=21% Similarity=0.232 Sum_probs=374.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 123 SCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSS 202 (1255)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 202 (1255)
+.+++.++...++.++..++..+.|++++++++.+...... ......++.+++..++..++.....+...+.+.++...
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888999999999999999999988643221 11111111222222223333222223333444555555
Q ss_pred HHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000845 203 LCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTV 281 (1255)
Q Consensus 203 l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~ 281 (1255)
+...+|+|.++.+....++..+|+++|.++.|++.+.+.+. .+..++...+.+++++++++..-++.+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66778888888887777788999999999999999987654 45556666666666666665543335555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000845 282 LGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWS-- 359 (1255)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~-- 359 (1255)
.+..++.+...+..++..+..++..+...|.++++++||.|++|+.+.+++.+..++-.+..++.....+........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888899999999999999999999999999999977777665444333322222222221111111
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccc
Q 000845 360 SPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRA 439 (1255)
Q Consensus 360 ~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~ 439 (1255)
....+.++.++.+.+..+.+|++.+++.+.++..+..|+..++..+..+.++.++.+||.+|++.++..+......+ .
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~ 473 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP--L 473 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC--C
Confidence 11123345567777778899999999999999999999999999999999999999999999987653221111111 1
Q ss_pred cCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----------------
Q 000845 440 ELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------------- 502 (1255)
Q Consensus 440 ~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G----------------- 502 (1255)
+..+.|+++|++|+|+.++++++|+|+||++++||.++||||+|||||||+++|+|+++|.+|
T Consensus 474 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 474 NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 134579999999999876556899999999999999999999999999999999999999998
Q ss_pred --------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHc
Q 000845 503 --------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 503 --------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
+++..+|+|++|.+||+|.+|||||||||+||||++
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 245679999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618 (1255)
Q Consensus 539 ~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l 618 (1255)
++|+|+||||||||||+++++.|.+ ....++||+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|.++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999999988876 2234789999999999999999999999999999999999999877766654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=593.44 Aligned_cols=218 Identities=21% Similarity=0.310 Sum_probs=173.8
Q ss_pred eEEEEEEEEEeCC-CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCCEEEEcCEeCCCCCh-HHhhc
Q 000845 1003 KVEIYDLQIRYRP-NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-PTGGKIIIDGLDITTIGL-YDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~-~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-~~~G~I~idG~di~~i~~-~~lR~ 1079 (1255)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+. +..|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 23459999999999999999999999999999999999998 599999999999875543 34677
Q ss_pred ccEEEccCC---ccCC-CchhhhcccCC--CC------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1080 NLGIIPQDP---TLFS-GSVRYNLDPLS--QF------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1080 ~i~~vpQdp---~Lf~-gTIr~Nl~~~~--~~------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.++|+||+| .+|. -|+.+|+.... .+ +.++..+ ...++++.+++.+ .........|
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~----------~~~~~~~~~L 406 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELK--TILESIQRLKVKT----------ASPELAIARL 406 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHH--HHHHHHHhcCccC----------CCcccccccC
Confidence 899999997 3665 59999996321 11 1111100 0001333333310 1122334579
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
|||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|+++..
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 47899999999999876 999999999999999
Q ss_pred cChhHHh
Q 000845 1226 DEPKKLL 1232 (1255)
Q Consensus 1226 G~~~eLl 1232 (1255)
|+++++.
T Consensus 487 ~~~~~~~ 493 (506)
T PRK13549 487 LINHNLT 493 (506)
T ss_pred eccccCC
Confidence 9988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=586.37 Aligned_cols=496 Identities=20% Similarity=0.240 Sum_probs=398.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 115 PSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194 (1255)
Q Consensus 115 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1255)
..+++..++.+++.++...++.++..++.++.|++++.+++.+-... .....+.++++++++.++..++.....+...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 124 RDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556556778888888888999999999999999999999775322 12233445555555666666666667778888
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW-F-HQIWSTSLQLCIAVVVVYYSVGLATIA 272 (1255)
Q Consensus 195 ~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~-~-~~~~~~pl~i~v~~~lL~~~lG~~~l~ 272 (1255)
++.++...+...+|+|.++++....++.++|++++.++ |++.+.+.+.. + ..+...++ +++++++++..-++.+++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 280 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988778889999999997 78988876543 2 22333333 344555555554556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 273 TLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY 352 (1255)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~ 352 (1255)
.++++++..++..++.+...+..++.++..+++.+...|.++++++||.++.|+.+.++.++.-++..+...+.......
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENL 360 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888889999999999999999999999999999999999999998888777555544444443333333
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 000845 353 YMVLFWSSPIL--IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS 430 (1255)
Q Consensus 353 ~~~~~~~~~~~--~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 430 (1255)
...+......+ +.+++++.|.+..+.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.|+..+.
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 22222222222 3335567777778899999999999999999999999999999999999999999999987542211
Q ss_pred chhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------
Q 000845 431 DMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------- 502 (1255)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------- 502 (1255)
.. ..+ .+..+.|+++|++|+|+.+. +++|+|+||+|++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 441 ~~-~~~--~~~~~~I~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 441 AK-TDP--GKLSGAIEVDRVTFRYRPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred Cc-CCC--CCCCceEEEEEEEEEcCCCC-ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 10 011 11345799999999997543 5899999999999999999999999999999999999999999
Q ss_pred ----------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHH
Q 000845 503 ----------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQR 530 (1255)
Q Consensus 503 ----------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqR 530 (1255)
+++..+|+|++|.+||+|.+||||||||
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 2467899999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 531 IaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|+||||+|++|+|++||||||+||+++++++.+.+ ..+ ++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L-~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999887654 433 689999999999999999999999999999999999998
Q ss_pred cchHHHHHHH
Q 000845 611 TSQEFQDLVN 620 (1255)
Q Consensus 611 ~~~~~~~l~~ 620 (1255)
.++.|.+++.
T Consensus 674 ~~~~y~~l~~ 683 (686)
T TIGR03797 674 REGLFAQLAR 683 (686)
T ss_pred CCcHHHHHHH
Confidence 8888888765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-61 Score=590.97 Aligned_cols=212 Identities=19% Similarity=0.339 Sum_probs=169.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
.++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. ..+|+++
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 28999999999999999999999999999999999999999999999999876543 4567899
Q ss_pred EEEccCC---ccCCC-chhhhcccCCCC------------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1082 GIIPQDP---TLFSG-SVRYNLDPLSQF------------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1082 ~~vpQdp---~Lf~g-TIr~Nl~~~~~~------------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
+||||++ .+|+. |+++|+...... ...+..+ ...++++..++. ++..+.. ..
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~------~~~~~~~----~~ 408 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQR--TAENQRELLALK------CHSVNQN----IT 408 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHH--HHHHHHHhcCCC------CCCccCc----cc
Confidence 9999984 57765 999999742110 1110000 000133333331 0122333 35
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1223 (1255)
.||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+++
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998753 47899999999998865 9999999999999
Q ss_pred EEcChhH
Q 000845 1224 EYDEPKK 1230 (1255)
Q Consensus 1224 e~G~~~e 1230 (1255)
+.+++.+
T Consensus 489 ~~~~~~~ 495 (510)
T PRK09700 489 QILTNRD 495 (510)
T ss_pred EEecCcc
Confidence 9987644
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-60 Score=628.19 Aligned_cols=251 Identities=18% Similarity=0.296 Sum_probs=195.5
Q ss_pred HHhhhhhHHHHHHHHh--cCCCCCcccccCCCCCCCCCCCc--eEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEE
Q 000845 964 IVGNLIVSVERLNQYM--RIPSEAPELVQKNSPAPDWPPTG--KVEIYDLQIRYR--PNAPLVLRGITCTFEGGHKIGVV 1037 (1255)
Q Consensus 964 ~~~~~~~s~~Ri~~~~--~~~~e~~~~~~~~~~~~~~p~~g--~I~~~nvs~~Y~--~~~~~vL~~is~~I~~Ge~vaIv 1037 (1255)
..+..+.++||..++. +.+.|.+.......++. ..| .++++||+++|+ ++.+.+|+|||++|+|||++||+
T Consensus 719 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~ 795 (1394)
T TIGR00956 719 TSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM 795 (1394)
T ss_pred ccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEE
Confidence 4455567778877652 23323222111111111 133 479999999995 33457999999999999999999
Q ss_pred cCCCCcHHHHHHHHhccCC---CCCCEEEEcCEeCCCCChHHhhcccEEEccCCc-cCCCchhhhcccC------CCCCh
Q 000845 1038 GRTGSGKTTLISALFRLVE---PTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT-LFSGSVRYNLDPL------SQFTD 1107 (1255)
Q Consensus 1038 G~sGsGKSTLl~lL~rl~~---~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~-Lf~gTIr~Nl~~~------~~~sd 1107 (1255)
||||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++. ++..|+||||++. ...++
T Consensus 796 G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~ 871 (1394)
T TIGR00956 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871 (1394)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCH
Confidence 9999999999999999997 78999999999985 257899999999876 4567999999742 12344
Q ss_pred HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC-eEEEecCCCCCCHHHHHHHH
Q 000845 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ-ILVLDEATASIDNATDSILQ 1186 (1255)
Q Consensus 1108 ~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~-ILiLDE~TS~LD~~te~~i~ 1186 (1255)
++.++ ...++++..++.+ -.|+.+++.|.+||||||||++|||||+.+|+ ||+||||||+||+.+...|+
T Consensus 872 ~~~~~--~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 872 SEKME--YVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred HHHHH--HHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 43322 0112666666543 36888998888999999999999999999997 99999999999999999999
Q ss_pred HHHHHH-cCCcEEEEeccCchhh--hhcCEEEEEeCC-EEEEEcChhH
Q 000845 1187 NTIRRE-FANCTVITVAHRIATV--MDCNMVLSMSDG-KLVEYDEPKK 1230 (1255)
Q Consensus 1187 ~~l~~~-~~~~TvI~IaHrl~ti--~~~DrI~vl~~G-~ive~G~~~e 1230 (1255)
+.|++. .+++|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999987 4689999999999974 469999999997 9999999743
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=585.40 Aligned_cols=489 Identities=22% Similarity=0.272 Sum_probs=395.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 115 PSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194 (1255)
Q Consensus 115 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1255)
...++..++.+++.+....++.++..++.++.|++++.+++.+-... .....+.++++++++.++.+++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566778888888888889999999999999999999765322 12223334445555555666666666777888
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000845 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW--FHQIWSTSLQLCIAVVVVYYSVGLATIA 272 (1255)
Q Consensus 195 ~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~--~~~~~~~pl~i~v~~~lL~~~lG~~~l~ 272 (1255)
.+.++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.+.. +..+...+. +++.++++++.-++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998765 567899999999 799999987543 223333333 344444555544557777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 273 TLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY 352 (1255)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~ 352 (1255)
.++++++.+.+..++.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++..+..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888999999999999999999999999999999999999999999999988777776666665555544
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 000845 353 YMVLFWSSPI--LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS 430 (1255)
Q Consensus 353 ~~~~~~~~~~--~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 430 (1255)
...+...... .+.+++++.+.+.++.+|++.++.++.++..+..|+..++..+..+.+++++++|+.++++.|+..+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3333222222 23345677777778899999999999999999999999999999999999999999999987653221
Q ss_pred chhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------
Q 000845 431 DMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------- 502 (1255)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------- 502 (1255)
.....+ ..+..+.|+++|++|+|+.. ++++|+|+||+|++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 451 ~~~~~~-~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GTRFLH-RPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCC-CCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 111000 11134579999999999754 35799999999999999999999999999999999999999998
Q ss_pred -----------------------------------------------------cccCCCCCCCccccccCCCcCChHHHH
Q 000845 503 -----------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQ 529 (1255)
Q Consensus 503 -----------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkq 529 (1255)
+++..+|+|++|.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 246789999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHh
Q 000845 530 RIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 530 RIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
|++||||++++|+|+|||||||+||+++++.|.+ .+....+++|+|+||||++.++.||+|++|++|++++.|+|+|++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999988864 566677899999999999999999999999999999999999987
Q ss_pred h
Q 000845 610 V 610 (1255)
Q Consensus 610 ~ 610 (1255)
+
T Consensus 688 ~ 688 (694)
T TIGR03375 688 E 688 (694)
T ss_pred H
Confidence 5
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=618.97 Aligned_cols=527 Identities=18% Similarity=0.197 Sum_probs=393.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC----CCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000845 695 FAYLIFLVAQILQSLWIATYIP----STSISR--LKLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFR 768 (1255)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~ 768 (1255)
+..++..++.++.|+.+...++ ...... ..+++.++++.++..++.....+.....+.++...+...+|+++++
T Consensus 324 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~ 403 (1522)
T TIGR00957 324 CFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALV 403 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666677776664332 111111 1122222333333334433344456778889999999999999999
Q ss_pred CCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 769 APMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAK 848 (1255)
Q Consensus 769 ~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r 848 (1255)
.|..++++.++|+++|+++.|++.+.... ..+..+....+.++++++++.....+.+++.+.++++++.+..++.+..+
T Consensus 404 l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~ 482 (1522)
T TIGR00957 404 ITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482 (1522)
T ss_pred CChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988744 34555555555555555444333222223333333444455555556666
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 849 ELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCT 928 (1255)
Q Consensus 849 ~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 928 (1255)
..++...+......+.+.|.++|+++||.|++|+.+.+++.+..++..+..........+.... .....+++.++.+..
T Consensus 483 ~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~ 561 (1522)
T TIGR00957 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT-WVCTPFLVALITFAV 561 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6777777788888899999999999999999999999998887776655433322222221111 111111111111111
Q ss_pred HHhc--cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCC-CCceEE
Q 000845 929 TLLH--KGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWP-PTGKVE 1005 (1255)
Q Consensus 929 ~~~~--~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p-~~g~I~ 1005 (1255)
+... .+.++++.+-.++++...+..++..+...+..+.....|.+|+.++++.+++++..... ....+ ..+.|+
T Consensus 562 ~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~---~~~~~~~~~~i~ 638 (1522)
T TIGR00957 562 YVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER---RTIKPGEGNSIT 638 (1522)
T ss_pred HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc---cccCCCCCCcEE
Confidence 2221 23456666666666666677888888889999999999999999999765443211100 01111 124799
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
++|++|+|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +|+|||
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~ 705 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVP 705 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEc
Confidence 9999999975556799999999999999999999999999999999999999999999997 599999
Q ss_pred cCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCC
Q 000845 1086 QDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR 1165 (1255)
Q Consensus 1086 Qdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~ 1165 (1255)
|+|.+|++||||||.+..++++++..+ +++.|++.+++..+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~~~~~~~------~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~ 779 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALNEKYYQQ------VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 779 (1522)
T ss_pred CCccccCCcHHHHhhcCCccCHHHHHH------HHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999766666666665 89999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH---HcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1166 QILVLDEATASIDNATDSILQNTIRR---EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1166 ~ILiLDE~TS~LD~~te~~i~~~l~~---~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
+|+|||||||+||+++++.|.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+|++++++ ++.|+++
T Consensus 780 ~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l 858 (1522)
T TIGR00957 780 DIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEF 858 (1522)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHHH
Confidence 99999999999999999999998863 4578999999999999999999999999999999999999975 7889988
Q ss_pred HHHH
Q 000845 1243 VKEY 1246 (1255)
Q Consensus 1243 ~~~~ 1246 (1255)
++.+
T Consensus 859 ~~~~ 862 (1522)
T TIGR00957 859 LRTY 862 (1522)
T ss_pred HHhh
Confidence 8744
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-61 Score=586.04 Aligned_cols=212 Identities=21% Similarity=0.335 Sum_probs=170.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+... .|++|
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 589999983 1699999999999999999999999999999999999999999999999998776654 46789
Q ss_pred EEEccCC---ccCCC-chhhhcccC--C--C-C-ChHHHHhccCchhHHHhccHHHHHHhhhcCcc-chhcCCCCCCChh
Q 000845 1082 GIIPQDP---TLFSG-SVRYNLDPL--S--Q-F-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD-SLVVQDGANWSMG 1150 (1255)
Q Consensus 1082 ~~vpQdp---~Lf~g-TIr~Nl~~~--~--~-~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld-t~v~e~G~~LSgG 1150 (1255)
+|+||++ .+|.. |+.+|+... . . . ...+.. ..+.+.+..+ |++ .........||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~--~l~~~~~~~~~~~LSgG 407 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----------AVLERYRRAL--NIKFNHAEQAARTLSGG 407 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----------HHHHHHHHHc--CCCCCCccCccccCCcH
Confidence 9999996 36654 999998531 1 0 0 111111 1112223222 232 2233334579999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+++..|++
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998764 47899999999999976 999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
+++..+
T Consensus 488 ~~~~~~ 493 (510)
T PRK15439 488 AAINVD 493 (510)
T ss_pred ccCCHH
Confidence 887643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=579.44 Aligned_cols=201 Identities=20% Similarity=0.328 Sum_probs=169.8
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999953 4599999999999999999999999999999999999999999999987 3579
Q ss_pred EEEccCCc--cCC-CchhhhcccCC--CCChHHHHhccCchhHHHhccHH-HHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1082 GIIPQDPT--LFS-GSVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQLR-EVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1082 ~~vpQdp~--Lf~-gTIr~Nl~~~~--~~sd~ei~~~~~~~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+|+||++. ++. .|+++|+..+. ...++++.+ +++..++. +.. + ....+||||||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~----~~~~~LSgGq~qrv 447 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG------TLGRLLFSQDDI-------K----KSVKVLSGGEKGRM 447 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH------HHHHcCCChhHh-------c----CcccccCHHHHHHH
Confidence 99999984 443 59999986432 122333444 66776662 222 2 23357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEE-EEcChhHHhh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV-EYDEPKKLLR 1233 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl~ 1233 (1255)
+||||++++|+||||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|++.++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999999875 4699999999999876 9999999999998 7899988875
Q ss_pred c
Q 000845 1234 R 1234 (1255)
Q Consensus 1234 ~ 1234 (1255)
.
T Consensus 526 ~ 526 (530)
T PRK15064 526 S 526 (530)
T ss_pred H
Confidence 4
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=606.07 Aligned_cols=220 Identities=20% Similarity=0.272 Sum_probs=187.0
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4699999999996433569999999999999999999999999999999999999999999999999965 456688999
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
||+||++.++.. |++|||..+. ..+.+++.+ ...++++.+++.++.++. ...||||||||++|
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~--~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK--VANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLST 2081 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHH
Confidence 999999998865 9999996432 122222221 001267777776654332 24699999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||||+.+|+||+|||||++||+.+.+.+++.|++.. +++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999998863 57999999999999976 9999999999999999999997653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=578.66 Aligned_cols=493 Identities=21% Similarity=0.235 Sum_probs=388.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGL 197 (1255)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1255)
+...++.+++.++...+..++..++.++.|++++.+++.+-... .....+.++++++++.++..++.....+...+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777888888888999999999999999998765322 12222334444455555566666666677788888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 198 KIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW-FHQIWSTSLQLCIAVVVVYYSVGLATIATLIV 276 (1255)
Q Consensus 198 ~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~ 276 (1255)
++...+...+|+|.++++....++.++|+++|.++ |++.+.+.+.. ........+.+++.+.++++.-++.+++.+++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999988878889999999998 99998876542 22222223333444444444434456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000845 277 MILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQK----GY 352 (1255)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~----~~ 352 (1255)
+++...+..++.+...+..++.++..+++.+...|.++++++||.+++|+.+.++.++...+..+...+..... .+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788888999999999999999999999999999999999999988887765544443333322222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 000845 353 YMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432 (1255)
Q Consensus 353 ~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 432 (1255)
..++.... .+.+++++.+.+..+.+|++.++++..++..+..|+..+...+..+.+++++++|+.++++.|+..+...
T Consensus 385 ~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 462 (708)
T TIGR01193 385 KAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK 462 (708)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22222222 2445667888888899999999999999999999999999999999999999999999998754322111
Q ss_pred hcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------
Q 000845 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------- 502 (1255)
Q Consensus 433 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------- 502 (1255)
...+. .+..+.|+++|++|+|+.+ +++|+|+||+|++|+.++|+|++|||||||+++|+|.++|.+|
T Consensus 463 ~~~~~-~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 463 KRTEL-NNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred cccCC-CCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 00111 1134679999999999743 4799999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHH
Q 000845 503 ----------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQR 530 (1255)
Q Consensus 503 ----------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqR 530 (1255)
+++..+|+|++|.|||+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 2356789999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 531 IaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|+||||++++|+|+|||||||+||+++++++.+.+. .. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~-~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH-Hh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999988876554 43 7899999999999999999999999999999999999998
Q ss_pred cchHHHHHH
Q 000845 611 TSQEFQDLV 619 (1255)
Q Consensus 611 ~~~~~~~l~ 619 (1255)
..+.|.+++
T Consensus 698 ~~~~y~~l~ 706 (708)
T TIGR01193 698 RNGFYASLI 706 (708)
T ss_pred cCCcHHHHh
Confidence 877787765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=583.87 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=169.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
.++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ...|+.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 5899999842 38999999999999999999999999999999999999999999999999875433 4567899
Q ss_pred EEEccCCc---cCC-CchhhhcccCCC--C-------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1082 GIIPQDPT---LFS-GSVRYNLDPLSQ--F-------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1082 ~~vpQdp~---Lf~-gTIr~Nl~~~~~--~-------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
+|+||+|. +|. .|+.+|+..... . ...+-.+ ...+.++..++. ++-.++. ..+||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~------~~~~~~~----~~~LS 398 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAE--NADRFIRSLNIK------TPSREQL----IMNLS 398 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHH--HHHHHHHhcCcc------cCCccCc----cccCC
Confidence 99999973 554 699999864211 0 1100000 000133333331 0112333 35799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998764 47899999999999976 9999999999999999
Q ss_pred ChhHHh
Q 000845 1227 EPKKLL 1232 (1255)
Q Consensus 1227 ~~~eLl 1232 (1255)
+++|..
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 988754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=583.91 Aligned_cols=211 Identities=20% Similarity=0.318 Sum_probs=170.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 27999999999999999999999999999999999999999999999999987665 3467889
Q ss_pred EEEccCC---ccCC-CchhhhcccCCC---------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1082 GIIPQDP---TLFS-GSVRYNLDPLSQ---------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1082 ~~vpQdp---~Lf~-gTIr~Nl~~~~~---------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
+||||+| .+|. -|+++|+..... .+.++..+ ...++++.+++. +.........||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~----------~~~~~~~~~~LS 397 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ--AVSDFIRLFNIK----------TPSMEQAIGLLS 397 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHH--HHHHHHHhcCCC----------CCCccCchhhCC
Confidence 9999997 3554 599999964210 11111100 000133333321 112333445799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998864 47899999999999876 9999999999999999
Q ss_pred ChhHHh
Q 000845 1227 EPKKLL 1232 (1255)
Q Consensus 1227 ~~~eLl 1232 (1255)
+++++.
T Consensus 478 ~~~~~~ 483 (501)
T PRK10762 478 TREQAT 483 (501)
T ss_pred ccccCC
Confidence 988763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-58 Score=578.16 Aligned_cols=488 Identities=22% Similarity=0.266 Sum_probs=383.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHH
Q 000845 736 MMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTF 815 (1255)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~ 815 (1255)
..++.-...+.....+.++-..+-..++++.++.+-.--..++.|+++|-++.|.+.+++..... ..+....+.++.++
T Consensus 255 ~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l 333 (1381)
T KOG0054|consen 255 QSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILAL 333 (1381)
T ss_pred HHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33333333444567777777777788888999888877778899999999999999999865443 33333444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHH
Q 000845 816 VVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAY 895 (1255)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~ 895 (1255)
.++...--+-+++.+.++++++.++.+..+..+..++.....+.......+|.++|+++||.|+||+.|.++..+..++.
T Consensus 334 ~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~E 413 (1381)
T KOG0054|consen 334 YLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKE 413 (1381)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHH
Confidence 44433222223344446666677777888888888888888888899999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 000845 896 ASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERL 975 (1255)
Q Consensus 896 ~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri 975 (1255)
.+........+............++.+++....++...+..++..+-.++++.-.+..++..+......+-+..+|++|+
T Consensus 414 l~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri 493 (1381)
T KOG0054|consen 414 LKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRL 493 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555544444433333333333332222222334455555555556666666666666777777778889999999
Q ss_pred HHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 000845 976 NQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 976 ~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl 1054 (1255)
.+|+..++..+..... .+.-+....|+++|.+|++.++ .++.|+||||+|++|+.+||||++|||||||+++|+|-
T Consensus 494 ~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE 570 (1381)
T KOG0054|consen 494 KEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE 570 (1381)
T ss_pred HHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999765443322111 1112334579999999999763 34599999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhc
Q 000845 1055 VEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134 (1255)
Q Consensus 1055 ~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~ 1134 (1255)
++..+|++.++|. ++||||.|++|+|||||||.++.+++++...+ +++.|+|.+.++.+|.
T Consensus 571 m~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~------Vi~aC~L~~Dle~Lp~ 631 (1381)
T KOG0054|consen 571 MPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDK------VIKACALKKDLEILPF 631 (1381)
T ss_pred cccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHH------HHHHccCHhHHhhcCC
Confidence 9999999999884 99999999999999999999888888777766 9999999999999999
Q ss_pred CccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHH-HHHHHHHcCCcEEEEeccCchhhhhcCE
Q 000845 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSIL-QNTIRREFANCTVITVAHRIATVMDCNM 1213 (1255)
Q Consensus 1135 gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i-~~~l~~~~~~~TvI~IaHrl~ti~~~Dr 1213 (1255)
|-.|.|||+|.||||||||||+||||+.++++|++||.|.|++|.++.+.| ++.|+...+++|+|.|||.++.+.+||.
T Consensus 632 GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~ 711 (1381)
T KOG0054|consen 632 GDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQ 711 (1381)
T ss_pred CCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCE
Confidence 999999999999999999999999999999999999999999999998875 6677777889999999999999999999
Q ss_pred EEEEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1214 VLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1214 I~vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
|+||++|+|+|.|+|+||++. ++.|.++.++..
T Consensus 712 Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 712 IIVLKDGKIVESGTYEELLKS-GGDFAELAHEEE 744 (1381)
T ss_pred EEEecCCeEecccCHHHHHhc-chhHHHHhhccc
Confidence 999999999999999999975 788988865543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=579.04 Aligned_cols=207 Identities=17% Similarity=0.259 Sum_probs=164.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCCEEEEcCEeCCC-CChHHhhcc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-TGGKIIIDGLDITT-IGLYDLRSN 1080 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-~~G~I~idG~di~~-i~~~~lR~~ 1080 (1255)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.++|.++.. .+....|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999953 3599999999999999999999999999999999998876 69999999987632 233456889
Q ss_pred cEEEccCCccCC---CchhhhcccC--C------CCCh---HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1081 LGIIPQDPTLFS---GSVRYNLDPL--S------QFTD---QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1081 i~~vpQdp~Lf~---gTIr~Nl~~~--~------~~sd---~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
|+|+||++.++. .|+++++.+. . .... +++.+ +++.+++.+. ........
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~----------~~~~~~~~ 401 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQ------WLDILGIDKR----------TADAPFHS 401 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHH------HHHHcCCchh----------hccCchhh
Confidence 999999987643 3677775421 1 0111 12222 5555555430 12222357
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEeccCchhhhh--cCEEEEEeCCEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-N-CTVITVAHRIATVMD--CNMVLSMSDGKL 1222 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~ti~~--~DrI~vl~~G~i 1222 (1255)
||||||||++||||++++|+||||||||++||+++.+.+.+.|++..+ + .|||+|||+++.+.. ||+|++|++|+|
T Consensus 402 LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 999999999999999999999999999999999999999999988653 3 479999999999974 799999999999
Q ss_pred EEEcC
Q 000845 1223 VEYDE 1227 (1255)
Q Consensus 1223 ve~G~ 1227 (1255)
++.-+
T Consensus 482 ~~~~~ 486 (490)
T PRK10938 482 YRYVQ 486 (490)
T ss_pred EEeec
Confidence 87643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-60 Score=579.19 Aligned_cols=217 Identities=21% Similarity=0.308 Sum_probs=171.4
Q ss_pred eEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCCEEEEcCEeCCCCCh-HHhhc
Q 000845 1003 KVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-TGGKIIIDGLDITTIGL-YDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-~~G~I~idG~di~~i~~-~~lR~ 1079 (1255)
-++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999432 23599999999999999999999999999999999999995 89999999999865443 56788
Q ss_pred ccEEEccCC---ccCC-CchhhhcccCC--CC------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1080 NLGIIPQDP---TLFS-GSVRYNLDPLS--QF------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1080 ~i~~vpQdp---~Lf~-gTIr~Nl~~~~--~~------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
+++|+||++ .+|. -|+++|+.... .. ..++..+ ...++++..++.+ .-.+.. ...|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~------~~~~~~----~~~L 404 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQ--IIGSAIQRLKVKT------ASPFLP----IGRL 404 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHH--HHHHHHHhcCccC------CCccCc----cccC
Confidence 999999996 3665 49999997421 00 1111000 0001344443310 012333 3579
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
|||||||++||||++++|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|+++..
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 47899999999999976 999999999999988
Q ss_pred cChhHH
Q 000845 1226 DEPKKL 1231 (1255)
Q Consensus 1226 G~~~eL 1231 (1255)
++..++
T Consensus 485 ~~~~~~ 490 (500)
T TIGR02633 485 FVNHAL 490 (500)
T ss_pred EccccC
Confidence 765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=560.72 Aligned_cols=498 Identities=16% Similarity=0.205 Sum_probs=388.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGL 197 (1255)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1255)
+..+++.+++.++...+..++..++..+.|++++.+++.+....... ....++..++++.++..++.....+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS-VLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777888888888999999988765432111 11112222333444444555555566677888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 198 KIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATLIV 276 (1255)
Q Consensus 198 ~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~ 276 (1255)
++...+...+|+|.++++.....+.++|++++.++.|++.+.+... .+..++..++.+++.+.++++.-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998888888999999999999999987543 455566667777777766665544456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 277 MILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVL 356 (1255)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 356 (1255)
+++.+.+..++.+...+..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...+..........+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667788888888899999999999999999999999999999999888887764444333333322222222211
Q ss_pred HHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhc
Q 000845 357 FWSSP--ILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQ 434 (1255)
Q Consensus 357 ~~~~~--~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~ 434 (1255)
..... ..+.++.++.+....+.++++.+...+.++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 255 ~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 334 (582)
T PRK11176 255 IQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC
Confidence 11111 2233345566666678899999998888888999999999999999999999999999999876432211100
Q ss_pred ccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------
Q 000845 435 VCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------ 502 (1255)
Q Consensus 435 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------ 502 (1255)
. .+..+.|+++|++|+|+.. ++++|+|+||+|++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 335 -~--~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~ 410 (582)
T PRK11176 335 -I--ERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY 410 (582)
T ss_pred -C--CCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc
Confidence 1 1133469999999999754 35899999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHH
Q 000845 503 --------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQ 532 (1255)
Q Consensus 503 --------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIa 532 (1255)
++++.+|+|.+|.+||+|.+|||||||||+
T Consensus 411 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 411 TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 135679999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 533 LARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
||||+|++|+|+||||||||||+.+++.+++. +..+.+++|+|+||||++.++.||+|++|++|++++.|+|+++++.+
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAA-LDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999888654 45556789999999999999999999999999999999999999888
Q ss_pred hHHHHHHHH
Q 000845 613 QEFQDLVNA 621 (1255)
Q Consensus 613 ~~~~~l~~~ 621 (1255)
+.|.+++..
T Consensus 570 ~~y~~l~~~ 578 (582)
T PRK11176 570 GVYAQLHKM 578 (582)
T ss_pred ChHHHHHHH
Confidence 888888754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=572.69 Aligned_cols=212 Identities=18% Similarity=0.326 Sum_probs=167.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH-Hhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY-DLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~-~lR~~i 1081 (1255)
.|+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 59999999975 2499999999999999999999999999999999999999999999999999876654 357789
Q ss_pred EEEccCCc---cCC-Cchhhhc-----ccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCcc-chhcCCCCCC
Q 000845 1082 GIIPQDPT---LFS-GSVRYNL-----DPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD-SLVVQDGANW 1147 (1255)
Q Consensus 1082 ~~vpQdp~---Lf~-gTIr~Nl-----~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld-t~v~e~G~~L 1147 (1255)
+|+||++. +|. .|+++|. ..... .+.++..+ ...+.+..+ |+. -.......+|
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----------DTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----------HHHHHHHhc--CccCCCcccccccC
Confidence 99999963 565 4676663 21100 11111111 112223322 221 1123344579
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999997753 57899999999999976 899999999999988
Q ss_pred cChhHH
Q 000845 1226 DEPKKL 1231 (1255)
Q Consensus 1226 G~~~eL 1231 (1255)
++++++
T Consensus 473 ~~~~~~ 478 (491)
T PRK10982 473 VDTKTT 478 (491)
T ss_pred EccccC
Confidence 877543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=566.43 Aligned_cols=521 Identities=13% Similarity=0.075 Sum_probs=404.3
Q ss_pred hHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCC-hhHHHH----HHHHHHHHHHHHHHHHH
Q 000845 676 PYIDYLSHKKG---FLYFTLSTFAYLIFLVAQILQSLWIATYIPS---TSIS-RLKLVI----VYSGIGIGMMFLLLTRS 744 (1255)
Q Consensus 676 ~~~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~~~~~----~~~~~~~~~~~~~~~~~ 744 (1255)
.+++|+..... +..+++.+++.++..++.+..+++.....+. .... ...+++ +++++.++..+..++..
T Consensus 81 ~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~ 160 (659)
T TIGR00954 81 FLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLK 160 (659)
T ss_pred HHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544332 2233344555566667777777777654432 1111 111122 22333344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHH-HhH
Q 000845 745 FLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGA-LTW 823 (1255)
Q Consensus 745 ~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~ 823 (1255)
++......+....+|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.++.++. .+|
T Consensus 161 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~ 239 (659)
T TIGR00954 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGS 239 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 66667777778888888888877888889987 8899999999999999999999999999999999988887776 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 824 QVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSF 903 (1255)
Q Consensus 824 ~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1255)
.++++++.++++..++.+++.+..+++.+...+..+.+.+.+.|.++|+++||+|+.++.+.+++.+..++..+......
T Consensus 240 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 240 VGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888999999999999999999999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-HHHH-H-HHhc----cCcccHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHhhhhhH
Q 000845 904 TAREWLIQRLETLSAIV-LAT-SALC-T-TLLH----KGHKGAGYT-GMALSF---GLSLNDFLVYSVNNQCIVGNLIVS 971 (1255)
Q Consensus 904 ~~~~wl~~~l~~~~~~~-~~~-~~~~-~-~~~~----~~~~~~~~~-g~~l~~---~~~~~~~l~~~~~~~~~~~~~~~s 971 (1255)
....++....+++.... ..+ .... . +... .|.++.|.. +..+.+ ...+...+..+......+.....+
T Consensus 320 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 399 (659)
T TIGR00954 320 KFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399 (659)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666554321 111 1111 1 2221 155666643 334444 456678888889999999999999
Q ss_pred HHHHHHHhcCCCCCcc------cccC-CC-----------C--CCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCC
Q 000845 972 VERLNQYMRIPSEAPE------LVQK-NS-----------P--APDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGG 1031 (1255)
Q Consensus 972 ~~Ri~~~~~~~~e~~~------~~~~-~~-----------~--~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~G 1031 (1255)
.+|+.++.+.+++... .... .. + .......+.|+++||+++|+.+ +++|+|+||+|++|
T Consensus 400 ~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~G 478 (659)
T TIGR00954 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCC
Confidence 9999999865332110 0000 00 0 0000124679999999999643 46999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccC--------C
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL--------S 1103 (1255)
Q Consensus 1032 e~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~--------~ 1103 (1255)
|++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++||+... .
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 547 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRR 547 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhcc
Confidence 99999999999999999999999999999999874 6789999999999999999999743 2
Q ss_pred CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHH
Q 000845 1104 QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183 (1255)
Q Consensus 1104 ~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~ 1183 (1255)
..+++++++ +++.+++.+++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 548 ~~~~~~i~~------~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 548 GLSDKDLEQ------ILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred CCCHHHHHH------HHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 356778877 9999999999877 999999986 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeC
Q 000845 1184 ILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD 1219 (1255)
Q Consensus 1184 ~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1219 (1255)
.+++.+++ .++|+|+||||++++..||+|++|+.
T Consensus 620 ~l~~~l~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999987 38999999999999999999999973
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=567.08 Aligned_cols=202 Identities=16% Similarity=0.234 Sum_probs=164.3
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
.-|+++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 36999999999953 3599999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEccCC-ccCC-CchhhhcccCCC---CC--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1082 GIIPQDP-TLFS-GSVRYNLDPLSQ---FT--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1082 ~~vpQdp-~Lf~-gTIr~Nl~~~~~---~s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
+|+||++ .++. -|+++|+..... .. +.+..+ +++..++.+. ..+. ....||||||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~l~~~~l~~~------~~~~----~~~~LSgG~~qr 453 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA------YVGRFNFKGG------DQQK----KVGVLSGGERNR 453 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH------HHHhCCCChh------HhcC----chhhCCHHHHHH
Confidence 9999997 5665 499999964211 11 122222 4555554211 1122 235799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeC-CEEEE-EcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSD-GKLVE-YDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive-~G~~~eL 1231 (1255)
++||||++.+|++|||||||++||+.+.+.+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 99999999999999999999999999999999999875 3 489999999999876 999999996 88874 7788877
Q ss_pred hhc
Q 000845 1232 LRR 1234 (1255)
Q Consensus 1232 l~~ 1234 (1255)
++.
T Consensus 532 ~~~ 534 (556)
T PRK11819 532 EED 534 (556)
T ss_pred HHH
Confidence 654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-56 Score=554.69 Aligned_cols=496 Identities=18% Similarity=0.261 Sum_probs=397.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 119 RALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLK 198 (1255)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1255)
..+++.+++.++.+.++.++..++...+|++++.+++..-.... ...-+.++++++++.++..++.....+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888899999999999999999998885543221 11222233334444455555555556677788888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000845 199 IRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVM 277 (1255)
Q Consensus 199 ~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~ 277 (1255)
+...+...+|+|.++.+....++.+.|++.|.++.|++++.+... .+..++...+.+++++.++++.-++.+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999988878888999999999999999987654 4555666666666666666654444666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 278 ILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLF 357 (1255)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 357 (1255)
++.+.+..++.+...+..++..+..+++.+...|.++++++||.++.|+.+.++.++..++..+...+..........+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888999999999999999999999999999999999999999888887766655554444433333322222
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcc
Q 000845 358 WSSPI--LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQV 435 (1255)
Q Consensus 358 ~~~~~--~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~ 435 (1255)
..... .+..+.++.+.+..+.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-- 322 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-- 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--
Confidence 22221 23345566677778899999999999999999999999999999999999999999999987554321111
Q ss_pred cccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-------------
Q 000845 436 CSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------- 502 (1255)
Q Consensus 436 ~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------- 502 (1255)
+. .+..+.|+++|++|+|+.+. +++|+|+||++++||.++|+|++|||||||+++|+|.++|.+|
T Consensus 323 ~~-~~~~~~i~~~~v~f~y~~~~-~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 323 AI-ERARGDVEFRNVTFRYPGRD-RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred CC-CCCCCeEEEEEEEEEcCCCC-CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 11 11345799999999997653 5899999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHH
Q 000845 503 -------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533 (1255)
Q Consensus 503 -------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaL 533 (1255)
+++..+|+|.+|.|||+|.+|||||||||+|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 1245689999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcch
Q 000845 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ 613 (1255)
Q Consensus 534 ARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~ 613 (1255)
|||+|++|+|++||||||+||+++++.|.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++++.++
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999988654 455667899999999999999999999999999999999999987777
Q ss_pred HHHHHHH
Q 000845 614 EFQDLVN 620 (1255)
Q Consensus 614 ~~~~l~~ 620 (1255)
.|.++..
T Consensus 560 ~~~~~~~ 566 (571)
T TIGR02203 560 LYAQLHN 566 (571)
T ss_pred HHHHHHH
Confidence 7777654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=571.98 Aligned_cols=198 Identities=23% Similarity=0.318 Sum_probs=162.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999953 46999999999999999999999999999999999999999999999741 2699
Q ss_pred EEccCC--ccCC-CchhhhcccC-CCCChHHHHhccCchhHHHhccHHH-HHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDP--TLFS-GSVRYNLDPL-SQFTDQEIWEVTIPSQVLEKCQLRE-VIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp--~Lf~-gTIr~Nl~~~-~~~sd~ei~~~~~~~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||++ .+.. .|+.+++... ....++++.+ .|+..++.. .. +.. ...||||||||++|
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~L~~~~l~~~~~-------~~~----~~~LSgGekqRl~L 441 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRD------YLGGFGFQGDKV-------TEE----TRRFSGGEKARLVL 441 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHH------HHHHcCCChhHh-------cCc----hhhCCHHHHHHHHH
Confidence 999985 3433 3777776311 1112233333 555555531 22 222 34799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEE-EEcChhHHh
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV-EYDEPKKLL 1232 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl 1232 (1255)
|||++++|++|||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 442 a~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 442 ALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999999999875 4 599999999999976 9999999999998 678888874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=553.10 Aligned_cols=493 Identities=19% Similarity=0.246 Sum_probs=377.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 120 ALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKY-EIYSLAISLFLVKCVESLAGRHWFFQSRLTGLK 198 (1255)
Q Consensus 120 ~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1255)
.+++.+++.++...++.++..++..+.|+++..+++.+........ ....+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888889999999999999999997643221111 112223334444455556666667777888888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Q 000845 199 IRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWF-HQIWSTSLQLCIAVVVVYYSVGL-ATIATLIV 276 (1255)
Q Consensus 199 ~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~ 276 (1255)
+...+...+|+|.++.+.....+.++|++.|.++.|++.+.+.+... ..+....+.+++.+.+++ .++| .+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~li~l~~ 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMF-SLDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 88999999999999998887788899999999999999998865533 333333333333333333 3344 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000845 277 MILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY---- 352 (1255)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~---- 352 (1255)
+++.+.+.....+...+..++..+..++-.+...|.++++++||.|+.|+.+.++..+..++..+...+.......
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556667777777888888888889999999999999999999999999887555433332222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 000845 353 YMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432 (1255)
Q Consensus 353 ~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 432 (1255)
...+......++.++.++ + ...+.++.+.+++++.++..+..|+..++..+..+.++..|++||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 111111111112112222 2 35678999999999999999999999999999999999999999999998764322111
Q ss_pred hcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------
Q 000845 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------- 502 (1255)
Q Consensus 433 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------- 502 (1255)
..+ ...+.|+++|++|+|+.+ +++|+|+||++++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 333 -~~~---~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 333 -DRP---LQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -ccC---CCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 111 134579999999999743 4799999999999999999999999999999999999999988
Q ss_pred --------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHH
Q 000845 503 --------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQ 532 (1255)
Q Consensus 503 --------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIa 532 (1255)
+++..+|+|.+|.+||+|.+|||||||||+
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 246679999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 533 LARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
||||+|++|+|+|||||||+||+++++.|. +.+..+.+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~-~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQ-QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999998885 4555666789999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHh
Q 000845 613 QEFQDLVNAH 622 (1255)
Q Consensus 613 ~~~~~l~~~~ 622 (1255)
+.|.++...+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8898887654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=569.24 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=162.0
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
.-++++||+++|++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 46999999999953 34599999999999999999999999999999999999999999999875 3579
Q ss_pred EEEccCCccCCCchhhhcc-c----CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFSGSVRYNLD-P----LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~gTIr~Nl~-~----~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||++. ...++.+|.. . +...+++++.+ +++..++.+.. .......||||||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~------~L~~~gl~~~~----------~~~~~~~LSgGqkqRva 637 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRA------HLGSFGVTGNL----------ALQPMYTLSGGQKSRVA 637 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHH------HHHHCCCChHH----------hcCCccccCHHHHHHHH
Confidence 99999973 2234555531 1 11234455544 67777764221 11233579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEE-EEcChhHH
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLV-EYDEPKKL 1231 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eL 1231 (1255)
||||++++|++|||||||++||+.+.+.+.+.+++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 638 LAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999999999764 3 599999999999986 9999999999998 56777664
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-56 Score=550.25 Aligned_cols=482 Identities=21% Similarity=0.254 Sum_probs=376.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000845 136 ALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLS 215 (1255)
Q Consensus 136 ~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K~l~l~ 215 (1255)
.++..++..+.|++++.+++.+..........+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677788999999999775432122223334444555555555655555667777888999999999999999999
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 216 NAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMILTVLGNSPLAKLQHK 293 (1255)
Q Consensus 216 ~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~~~~~~~~~~~~~~~~ 293 (1255)
.....+.++|+++|.+++|++.+..... .+..++..++..++++++++..++| .+++.++++++...+...+.+...+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877788999999999999999986543 4555666655555555555445666 5556666666666666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000845 294 YQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSP--ILIGAATLLT 371 (1255)
Q Consensus 294 ~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 371 (1255)
..++..+..++..+.+.|.++++++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+..+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999998887766433322222222222222111111111 1233445677
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcceEEEEeeE
Q 000845 372 CYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSAD 451 (1255)
Q Consensus 372 ~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~i~~~~~~ 451 (1255)
|.+.++.+|++.+++++.++..+..|+..++..+..+..++++.+||.++++.++..+......+ +..+.|+++|++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEE
Confidence 77778899999999999999999999999999999999999999999999987543211100011 123569999999
Q ss_pred EEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----------------------------
Q 000845 452 LSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------------------------- 502 (1255)
Q Consensus 452 f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G----------------------------- 502 (1255)
|+|+.+ ++++|+|+||++++|++++|+||+|||||||+++|+|+++|.+|
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999854 35799999999999999999999999999999999999999988
Q ss_pred --------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 000845 503 --------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPF 550 (1255)
Q Consensus 503 --------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~ 550 (1255)
.++..+|+|.+|.+|++|.+|||||||||+||||++++|+|+||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 235678999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 000845 551 SALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAH 622 (1255)
Q Consensus 551 SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~~ 622 (1255)
|+||+++++.+.+. +..+.+++|+|++||+++.++.||+|++|++|++++.|+++++++..+.|.+++..+
T Consensus 480 s~LD~~~~~~i~~~-l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 480 SAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred ccCCHHHHHHHHHH-HHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999888755 555668999999999999999999999999999999999999998888888887654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=563.34 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=162.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ + .+|+
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999953 3599999999999999999999999999999999999999999999954 2 1699
Q ss_pred EEccCCc-cCC-CchhhhcccCCC---CC--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1083 IIPQDPT-LFS-GSVRYNLDPLSQ---FT--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1083 ~vpQdp~-Lf~-gTIr~Nl~~~~~---~s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
|+||++. ++. -|+++|+..... .. +.+..+ +++..++.+. ........||||||||+
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~l~~~~l~~~----------~~~~~~~~LSgGe~qrv 452 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA------YVGRFNFKGS----------DQQKKVGQLSGGERNRV 452 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH------HHHhCCCChh----------HhcCchhhCCHHHHHHH
Confidence 9999973 665 499999974221 11 111222 4555554211 11223357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeC-CEEEE-EcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSD-GKLVE-YDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive-~G~~~eLl 1232 (1255)
+||||++.+|++|||||||++||+.+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++++ .|++++..
T Consensus 453 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 453 HLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 9999999999999999999999999999999999986 3 489999999999976 999999997 68874 47777665
Q ss_pred h
Q 000845 1233 R 1233 (1255)
Q Consensus 1233 ~ 1233 (1255)
+
T Consensus 531 ~ 531 (552)
T TIGR03719 531 E 531 (552)
T ss_pred H
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-55 Score=547.03 Aligned_cols=494 Identities=20% Similarity=0.257 Sum_probs=372.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 121 LISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAE-GEII--FKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGL 197 (1255)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1255)
+++.+++.++++.++.++..++..+.|.+++.+++..- .... ........+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888999999999999999999998642 2110 00111112233444445566666666777888899
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 198 KIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW-FHQIWSTSLQLCIAVVVVYYSVGLATIATLIV 276 (1255)
Q Consensus 198 ~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~ 276 (1255)
++...+...+|+|.++++....++.++|++++.+++|++++.++... +..+....+.++++++++++.-.+.+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888889999999999999999987643 44444445555555444443222233333333
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 277 MILTVL-GNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMV 355 (1255)
Q Consensus 277 ~~~~~~-~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 355 (1255)
+++..+ +..++.+..++..++..+..++..+.+.|.++++++||.|+.|+.+.+++.+..++-.+...+.....+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 3355667778888888899999999999999999999999999998888877555443333333333222222
Q ss_pred HHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 000845 356 LFWSSP--ILIGAATLLTCYFLGIPLNPSNVFTFLATLRIL-QEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432 (1255)
Q Consensus 356 ~~~~~~--~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l-~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 432 (1255)
+..... ..+.++.++.+. ..+.++++..++++.+...+ ..|+..++..+..+.++..|++||.++++.|+..+...
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 211111 122234455554 46778888877766554333 45788888899999999999999999998754321110
Q ss_pred hcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------
Q 000845 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------- 502 (1255)
Q Consensus 433 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------- 502 (1255)
...+ .+..+.|+++|++|+|+.++ +++|+|+||++++||.++|+||+|||||||+++|+|+++|.+|
T Consensus 329 ~~~~--~~~~~~i~~~~v~f~y~~~~-~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 329 TSTA--AADQVSLTLNNVSFTYPDQP-QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred ccCC--CCCCCeEEEEEEEEECCCCC-CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 0011 11345799999999997542 4799999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHH
Q 000845 503 ---------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRI 531 (1255)
Q Consensus 503 ---------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRI 531 (1255)
+++.. |+|++|.+||+|.+|||||||||
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHH
Confidence 24677 99999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 532 aLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+||||++++|+|+|||||||+||+++++.|.+ .+....+++|+|+|||+++.++.||+|++|++|++++.|+|+|++++
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999999999999999999999987754 55666679999999999999999999999999999999999999998
Q ss_pred chHHHHHHH
Q 000845 612 SQEFQDLVN 620 (1255)
Q Consensus 612 ~~~~~~l~~ 620 (1255)
++.|.++++
T Consensus 564 ~g~y~~l~~ 572 (574)
T PRK11160 564 QGRYYQLKQ 572 (574)
T ss_pred CcHHHHHHh
Confidence 888888764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=570.01 Aligned_cols=199 Identities=22% Similarity=0.320 Sum_probs=161.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999953 45999999999999999999999999999999999999999999998 4332 599
Q ss_pred EEccCC-ccCCC-chhhhcccCC-CC--C--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1083 IIPQDP-TLFSG-SVRYNLDPLS-QF--T--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1083 ~vpQdp-~Lf~g-TIr~Nl~~~~-~~--s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
|++|++ .++.. |+++|+.... .. . +.++.+ .++..++... ..+..+ ..||||||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~l~~~~l~~~------~~~~~~----~~LSgGekqRl 449 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG------YLQDFLFHPK------RAMTPV----KALSGGERNRL 449 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH------HHHhcCCCHH------HHhChh----hhCCHHHHHHH
Confidence 999986 46654 9999996421 11 1 222222 4444444211 122333 46999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe-CCEEEEE-cChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS-DGKLVEY-DEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-~G~ive~-G~~~eLl 1232 (1255)
+||||++.+|++|||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|+|.++ |++++-+
T Consensus 450 ~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 450 LLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999999999875 5699999999999976 99999998 8999875 5666654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=505.98 Aligned_cols=482 Identities=23% Similarity=0.279 Sum_probs=387.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 132 SGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQ 211 (1255)
Q Consensus 132 ~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K~ 211 (1255)
..++..+..+....+-.++..+++.+-..+. ...-+.++++++++.++++++...-....++.+.++|..+...+++|.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777765543322 233445667777788888888777788899999999999999999999
Q ss_pred hcCChhhhccCChhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000845 212 LRLSNAAKMMHTSGDIVNYVTVDAYRIGEFP----FWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPL 287 (1255)
Q Consensus 212 l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~----~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~~~~~ 287 (1255)
.++.....+..++|+..+++..-++.+..++ .........|+-+.++++...|. ++++-++.++++-.+.+.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~---aalIllit~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWA---AALILLITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999877778899999999999999987754 33444555677777776665544 5556666677666677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 288 AKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIE----KLRSEEYGWLKVLQLQKGYYMVLFWSSPIL 363 (1255)
Q Consensus 288 ~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~----~~R~~El~~~~~~~~~~~~~~~~~~~~~~~ 363 (1255)
++..++..++.++....=-...-+-|+|+.++|.|+-.+...++|. +.|++-|+.+|......++..++.+.. +
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls--i 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS--I 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 8888888888888888877888899999999999999887777764 589999998887655555444443322 2
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCc
Q 000845 364 IGAATLLTCYFLG-IPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELE 442 (1255)
Q Consensus 364 ~~~~~f~~~~~~~-~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~ 442 (1255)
+.++.|..+-+.+ ++++....|+++-+---.-.|++.+...++.-+++..+.+++..|++.|+...+............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 2223333334455 689999999999888888899999999999999999999999999999876443321111111133
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------------------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------- 502 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------------------- 502 (1255)
..+..+|.+|.|+..+ ++++|+||++++|++++|||++|||||||+++|+|++++++|
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 4566669999998653 899999999999999999999999999999999999999998
Q ss_pred -----------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCC
Q 000845 503 -----------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 503 -----------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~ 541 (1255)
+.+.. |+|-+|+|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 12334 899999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 000845 542 DIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621 (1255)
Q Consensus 542 ~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~ 621 (1255)
++||||||||+||+++++.| .+.+..+.++||+|+||||++.+..+|+|++||+|+++++|+|+++.++++.|.+++..
T Consensus 476 ~l~llDEpTA~LD~etE~~i-~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQII-LQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHH-HHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 99999999999999998655 56777788899999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000845 622 HK 623 (1255)
Q Consensus 622 ~~ 623 (1255)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 54
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=550.51 Aligned_cols=501 Identities=20% Similarity=0.247 Sum_probs=383.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 117 ILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAE-GEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLT 195 (1255)
Q Consensus 117 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1255)
.++.+++.+++.+....++.++..++.++.|++++.+++.+- ..+. .....+++.++++.++..++.....+...++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888888889999999999999999999733 3221 1111222223333333444444556677788
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000845 196 GLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATL 274 (1255)
Q Consensus 196 ~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~ 274 (1255)
+.++...+...+|+|.++++.....+.+.|++.|.++.|++.+.+... .+..++...+.+++++++++..-.+.+++.+
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999999999999988777778899999999999999987653 3444444444454444444433333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 275 IVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 354 (1255)
+.+++...+..++.+.+.+..++.++..++..+...|.++++++||.+++|+.+.++..+..++..+...+.........
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556678888888999999999999999999999999999999999888877755554443333322222222
Q ss_pred HHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcch
Q 000845 355 VLFWS--SPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDM 432 (1255)
Q Consensus 355 ~~~~~--~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~ 432 (1255)
.+... ...++..+.++.+.+..+.+|++.++++..++..+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 11111 1122344456777777889999999999999999999999999999999999999999999998754311110
Q ss_pred hcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------
Q 000845 433 QQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------- 502 (1255)
Q Consensus 433 ~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------- 502 (1255)
.......+....|+++|++|+|+.+.++++|+|+||+++|||.++|+|++|||||||+++|+|+++|.+|
T Consensus 326 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 326 HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405 (576)
T ss_pred CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 0000011123579999999999864446899999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHH
Q 000845 503 ---------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRI 531 (1255)
Q Consensus 503 ---------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRI 531 (1255)
+++..+|+|++|.+||+|.+||||||||+
T Consensus 406 ~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred hcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 13567899999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 532 aLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+||||+|++|+++|||||||+||+++++.++ +.+..+.+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~-~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQ-QALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 9999999999999999999999999987765 455566689999999999999999999999999999999999999888
Q ss_pred chHHHHHHH
Q 000845 612 SQEFQDLVN 620 (1255)
Q Consensus 612 ~~~~~~l~~ 620 (1255)
.+.|.++..
T Consensus 565 ~~~~~~l~~ 573 (576)
T TIGR02204 565 GGLYARLAR 573 (576)
T ss_pred CChHHHHHh
Confidence 777777654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-55 Score=555.19 Aligned_cols=501 Identities=21% Similarity=0.233 Sum_probs=396.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 115 PSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194 (1255)
Q Consensus 115 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1255)
.+.++..++.+++.+....+..++..++.++.|++++.+++.+-... .....+.++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777888888889999999999999999998764322 12223334445555555666666666777888
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIAT 273 (1255)
Q Consensus 195 ~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g 273 (1255)
++.++...+...+|+|.++++....++.++|++++.+ .|++.+.+.+. .+..+....+.+++.+++++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888888999999999 69999988653 333333333334444445554444466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 274 LIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYY 353 (1255)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~ 353 (1255)
++++++...+..++.+...+..++.++..+++.+.+.|.++++++||.++.|+.+.++..+.-++..+...+........
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777778888888888888999999999999999999999999999988888775555444444443333333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000845 354 MVLFWSSPI--LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431 (1255)
Q Consensus 354 ~~~~~~~~~--~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~ 431 (1255)
......... .+..+.+|.+.+..+.+|++.+++...+...+..|+..+...+..+.+++++++|+.++++.|+..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 222222111 233456777777788999999999999999999999999999999999999999999999876432211
Q ss_pred hhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC---------
Q 000845 432 MQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG--------- 502 (1255)
Q Consensus 432 ~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G--------- 502 (1255)
...+. ....+.|+++|++|+|+.+. +++|+|+||++++||.++|+|++|||||||+++|+|+++|.+|
T Consensus 445 -~~~~~-~~~~~~i~~~~vsf~y~~~~-~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 445 -GLAAL-PELRGAITFENIRFRYAPDS-PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred -CCCCC-CCCCCeEEEEEEEEEcCCCC-ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 10011 11346799999999997543 4799999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHH
Q 000845 503 ----------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQR 530 (1255)
Q Consensus 503 ----------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqR 530 (1255)
+.+..+|+|.+|.+|++|.+||||||||
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 2356799999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 531 IaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
++||||++++|+|+|||||||+||+++++.+.+. +..+.+++|+|++||+++.++.||+|++|++|++++.|+|+++++
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRN-MREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999888654 555667999999999999999999999999999999999999998
Q ss_pred cchHHHHHHHH
Q 000845 611 TSQEFQDLVNA 621 (1255)
Q Consensus 611 ~~~~~~~l~~~ 621 (1255)
..+.|.+++..
T Consensus 681 ~~~~y~~l~~~ 691 (694)
T TIGR01846 681 LQGLYARLWQQ 691 (694)
T ss_pred cCChHHHHHHh
Confidence 88888888753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=540.85 Aligned_cols=487 Identities=24% Similarity=0.296 Sum_probs=380.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 125 HWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLC 204 (1255)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 204 (1255)
++ .++.+.++.++..++....|.++..+++.+... ......+...++++.++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 788888888899999999999999999887611 11222223333333334445555556666667788889999
Q ss_pred HHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Q 000845 205 AAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWS-TSLQLCIAVVVVYYSVGL-ATIATLIVMILTVL 282 (1255)
Q Consensus 205 ~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~-~pl~i~v~~~lL~~~lG~-~~l~g~~~~~~~~~ 282 (1255)
..+|+|.++++....++...|++++.+++|++.+...+........ .++.++..++++ ..++| .+++.++..+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLL-FSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHH
Confidence 9999999999988888888999999999999999988766433222 333333333333 34555 44455555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHH
Q 000845 283 GNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYM-VLF-WSS 360 (1255)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~-~~~-~~~ 360 (1255)
...++.++..+..++..+..++..+.+.|.++++++||.|+.|+...++..+..+...+...+......... ... ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677667888889999999999999999999999999999998877666544443333222222222221 111 111
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhccccccc
Q 000845 361 PILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAE 440 (1255)
Q Consensus 361 ~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~ 440 (1255)
-.++.++.++.+.+..+.++++.+.+.+.++..+..|+..+...+..+..+..|++|+.++++.++...+.... ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCC
Confidence 12233445566666677899999999999999999999999999999999999999999999985532211110 111
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------------ 502 (1255)
..+.|+|+|++|+|+. ++++|+|+||++++||.++||||+||||||++++|+|+++|.+|
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4467999999999985 34899999999999999999999999999999999999999988
Q ss_pred -------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHcc
Q 000845 503 -------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 503 -------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
+.+..+|+|++|.|||+|.+|||||||||+||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 2467889999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~ 619 (1255)
+|+|++||||||+||+++++.|.+ .+..+.++||+|+|+||++.+.+||+|+||++|+|++.|+|+||++.++.|.+++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~-~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQD-ALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHH-HHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHH
Confidence 999999999999999999988865 4555668899999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 000845 620 NAH 622 (1255)
Q Consensus 620 ~~~ 622 (1255)
..+
T Consensus 562 ~~~ 564 (567)
T COG1132 562 QAQ 564 (567)
T ss_pred HHh
Confidence 654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=542.34 Aligned_cols=491 Identities=17% Similarity=0.231 Sum_probs=375.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 121 LISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIR 200 (1255)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 200 (1255)
+++.+++.++..+++.++..++.++.|++++.+++.+.... .. ..+++.+++..++..+......+...+...++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DI---FPLLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888999999999999999999776431 11 111111111222222223333445667778888
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Q 000845 201 SSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMI 278 (1255)
Q Consensus 201 ~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~ 278 (1255)
..+...+|+|.++++.....+.++|++.+.++.|++.+..... .+..+....+..++.+.+++. ++| .+++.+++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~~ 167 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8899999999999988888888999999999999999876533 333333333333333333332 333 4455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000845 279 LTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKL----RSEEYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~----R~~El~~~~~~~~~~~~~~ 354 (1255)
+...+..++.+...+.+++.++..++..+...|.++++++||.|+.|+.+.+++.+. ++.+.+..+.......+..
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888999999999999999999999999999999999877776553 3333333333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhc
Q 000845 355 VLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQ 434 (1255)
Q Consensus 355 ~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~ 434 (1255)
+.. ....+.+++++.|.+..+.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.++..+.....
T Consensus 248 ~~~--~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 248 AAS--TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred HHH--HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 211 122344566777777888999999999999999999999999999999999999999999999875432111010
Q ss_pred ccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------
Q 000845 435 VCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------ 502 (1255)
Q Consensus 435 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------ 502 (1255)
.+. .+..+.|+++|++|+|+.+ +++|+|+||++++|+.++|+|++|||||||+++|+|+++|.+|
T Consensus 326 ~~~-~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 326 IDL-GRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred CCc-CCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC
Confidence 000 1123579999999999743 4799999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHH
Q 000845 503 -------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533 (1255)
Q Consensus 503 -------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaL 533 (1255)
..+..+|+|.+|.+|++|.+|||||||||+|
T Consensus 403 ~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRial 482 (588)
T PRK13657 403 TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAI 482 (588)
T ss_pred CHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHH
Confidence 1255689999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcch
Q 000845 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ 613 (1255)
Q Consensus 534 ARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~ 613 (1255)
|||++++|+|++||||||+||+++++.|.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+++++++..+
T Consensus 483 ARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~ 561 (588)
T PRK13657 483 ARALLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGG 561 (588)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCC
Confidence 99999999999999999999999998886554 45557899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHh
Q 000845 614 EFQDLVNAH 622 (1255)
Q Consensus 614 ~~~~l~~~~ 622 (1255)
.|.++....
T Consensus 562 ~y~~l~~~~ 570 (588)
T PRK13657 562 RFAALLRAQ 570 (588)
T ss_pred hHHHHHHHh
Confidence 888887643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-55 Score=538.25 Aligned_cols=474 Identities=21% Similarity=0.198 Sum_probs=367.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 124 CHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSL 203 (1255)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 203 (1255)
.+++.++...++.++..++..+.|++++++++.+-... .....+.+++.++++.++.+++.....+...+.+.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888999999999999999998664221 12223344555566666677777777788888999999999
Q ss_pred HHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000845 204 CAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW--FHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTV 281 (1255)
Q Consensus 204 ~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~--~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~ 281 (1255)
...+|+|.++++.. ..+...+.+++|++++.+.+.. +..+...++.++.. ++++..-++.+++.++.+++..
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998752 2345678889999999876543 33334444433332 2333332333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 282 LGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSP 361 (1255)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 361 (1255)
.+..+..+...+..++.++..+++.+.+.|.++++++||.|++|+.+.+++.+..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888899999999999999999999999999999999999877666555444433333333222221111
Q ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccc
Q 000845 362 --ILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRA 439 (1255)
Q Consensus 362 --~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~ 439 (1255)
..+.+++++.+.+..+.+|++.+++++.++..+..|+..++..+..+.+++.|++||.++++.++..+... ..+
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~--- 311 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLP--- 311 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCC---
Confidence 12344567777777889999999999999999999999999999999999999999999998754322111 111
Q ss_pred cCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----------------
Q 000845 440 ELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------------- 502 (1255)
Q Consensus 440 ~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G----------------- 502 (1255)
+.++.++++|++|+|+.. ++++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|
T Consensus 312 ~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 134579999999999753 24799999999999999999999999999999999999999988
Q ss_pred --------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHc
Q 000845 503 --------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 503 --------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
+.++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 124568999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 539 ~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
++|+++|||||||+||+++++.+.+ ++..+. +++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999888764 455543 6899999999999999999999999999999999998863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=531.97 Aligned_cols=491 Identities=16% Similarity=0.216 Sum_probs=377.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 121 LISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIR 200 (1255)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 200 (1255)
+++.+++.++...++.++..++..+.|++++.+++.+...+. . ..+++..++..++..+......+...++..++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888999999999999999999997754321 1 111111112223333333334556677888899
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Q 000845 201 SSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMI 278 (1255)
Q Consensus 201 ~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~ 278 (1255)
..+...+|+|.++++....++.++|++++.++.|++.+...+. .+..+...++.+++.+++++. +.| .+++.+++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~~~ 167 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999998888888999999999999999986543 333344444444444444433 333 4445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000845 279 LTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSE----EYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~----El~~~~~~~~~~~~~~ 354 (1255)
+...+..++.+...+.+++..+..++..+.+.|.++++++||.++.|+.+.+++.+.-++ ..+..+.......+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777788888888888888999999999999999999999999888877664443 2222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhc
Q 000845 355 VLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQ 434 (1255)
Q Consensus 355 ~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~ 434 (1255)
.+... ..+.++.++.+.+..+.++++.+++.+.++..+..|+..++..+..+.+++.+++|+.++++.++..+.....
T Consensus 248 ~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 325 (585)
T TIGR01192 248 MASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA 325 (585)
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccC
Confidence 11111 1233455677777788999999999999999999999999999999999999999999999875422111110
Q ss_pred ccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------
Q 000845 435 VCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------ 502 (1255)
Q Consensus 435 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------ 502 (1255)
.+. .+..+.++++|++|+|+.+ +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|
T Consensus 326 ~~~-~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 326 PEL-PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred CCC-CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 011 1124569999999999753 3689999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHH
Q 000845 503 -------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQL 533 (1255)
Q Consensus 503 -------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaL 533 (1255)
..+..+|+|.+|.+|++|.+|||||||||+|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~l 482 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI 482 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHH
Confidence 1245689999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcch
Q 000845 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ 613 (1255)
Q Consensus 534 ARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~ 613 (1255)
|||++++|+++|||||||+||+++++.+. +++....+++|+|+|||+++.++.||+|++|++|++++.|+++++.++.+
T Consensus 483 ARall~~p~ililDEpts~LD~~~~~~i~-~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 561 (585)
T TIGR01192 483 ARAILKNAPILVLDEATSALDVETEARVK-NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG 561 (585)
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCC
Confidence 99999999999999999999999988775 55566667999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHh
Q 000845 614 EFQDLVNAH 622 (1255)
Q Consensus 614 ~~~~l~~~~ 622 (1255)
.|.+++..+
T Consensus 562 ~y~~l~~~~ 570 (585)
T TIGR01192 562 RFYKLLRRS 570 (585)
T ss_pred hHHHHHHhC
Confidence 888887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=580.52 Aligned_cols=516 Identities=17% Similarity=0.192 Sum_probs=384.4
Q ss_pred HHHHHHHHHHHHHHhhhcC---C-CCCC--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000845 698 LIFLVAQILQSLWIATYIP---S-TSIS--RL-KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAP 770 (1255)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~---~-~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p 770 (1255)
++..++.++.|+.+...++ . .... .. .+++.++++.++..++.....+.....+.++-..+...+|+++++.+
T Consensus 90 ~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 169 (1490)
T TIGR01271 90 YFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLS 169 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566666666553321 1 1111 11 12223333334444555555566667777788888888899999999
Q ss_pred cccccccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 771 MAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKEL 850 (1255)
Q Consensus 771 ~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l 850 (1255)
...+++.++|+++|+++.|++.++..+... ..+....+.++++++++.....+.+++.+.++++++.++.+..+.....
T Consensus 170 ~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~ 248 (1490)
T TIGR01271 170 SRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPY 248 (1490)
T ss_pred HHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999866543 3344555555666666655555555555555566666777777777788
Q ss_pred HHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 851 MRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTL 930 (1255)
Q Consensus 851 ~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~~ 930 (1255)
++..........+...|.++|+++||.|++|+.|.+++.+..+...+..........|...... ....+..++.+..+.
T Consensus 249 ~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~y~ 327 (1490)
T TIGR01271 249 RDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFF-FSGFFVVFLSVVPYA 327 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999888887766655444333323222211 111122222222222
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEE
Q 000845 931 LHKGHKGAGYTGMALSFGLSLNDFL-VYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDL 1009 (1255)
Q Consensus 931 ~~~~~~~~~~~g~~l~~~~~~~~~l-~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nv 1009 (1255)
+. +..+++.+-.++++...+...+ ..+...+..+....+|++|+.+|+..++..+.. . . +....|+++|+
T Consensus 328 ~~-~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~----~-~~~~~i~~~~~ 398 (1490)
T TIGR01271 328 LI-KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---Y----N-LTTTEVEMVNV 398 (1490)
T ss_pred Hh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---c----c-CCCCceEEecc
Confidence 22 2234443333344444444443 346666777788899999999999765432110 0 0 11235888888
Q ss_pred EEEeCCC--------------------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 000845 1010 QIRYRPN--------------------------------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057 (1255)
Q Consensus 1010 s~~Y~~~--------------------------------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~ 1057 (1255)
+|.|+.. ..++|+|+||+|++||.++|+||+|||||||+++|+|+++|
T Consensus 399 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~ 478 (1490)
T TIGR01271 399 TASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP 478 (1490)
T ss_pred eEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8888421 13589999999999999999999999999999999999999
Q ss_pred CCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCcc
Q 000845 1058 TGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137 (1255)
Q Consensus 1058 ~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld 1137 (1255)
++|+|.+|| +|+||||+|.+|++||||||.+...++++...+ +++.|+|.+.+..+|+|.+
T Consensus 479 ~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~------~~~~~~L~~~l~~l~~g~~ 539 (1490)
T TIGR01271 479 SEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS------VIKACQLEEDIALFPEKDK 539 (1490)
T ss_pred CCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHH------HHHHHhHHHHHHhcccccc
Confidence 999999998 499999999999999999998655555555544 8899999999999999999
Q ss_pred chhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHH-HHHHcCCcEEEEeccCchhhhhcCEEEE
Q 000845 1138 SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNT-IRREFANCTVITVAHRIATVMDCNMVLS 1216 (1255)
Q Consensus 1138 t~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~-l~~~~~~~TvI~IaHrl~ti~~~DrI~v 1216 (1255)
|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +++..+++|+|+|||+++.+..||+|++
T Consensus 540 t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~ 619 (1490)
T TIGR01271 540 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILL 619 (1490)
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999999874 6777789999999999999999999999
Q ss_pred EeCCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1217 MSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1217 l~~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
|++|+|++.|+|+++.+. ++.|.+.+.
T Consensus 620 l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 620 LHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred EECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 999999999999999875 566766664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-54 Score=529.28 Aligned_cols=459 Identities=21% Similarity=0.202 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 120 ALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKI 199 (1255)
Q Consensus 120 ~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1255)
.+++.+++.++...++.++..++..+.|++++.+++.+..... ....+.++++++++.++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888889999999999999999987653221 111111112222233444454445556677788888
Q ss_pred HHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000845 200 RSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFW-FHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMI 278 (1255)
Q Consensus 200 r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~-~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~ 278 (1255)
...+...+|+|.++++....++.++|+++|.++.|++++.+.+.. +..+....+.++++++++++.-.+.+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 899999999999999988778889999999999999999987653 3344444444444544444332234444444434
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 279 LTVLGNSPLA-KLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLF 357 (1255)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 357 (1255)
++..+...+. +...+..++..+..++..+...|.++|+++||.|++|+.+.+++.+..++..+...+.....+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333333 334556677788889999999999999999999999999999988866655555444444443333222
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhc-
Q 000845 358 WSSPI--LIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQ- 434 (1255)
Q Consensus 358 ~~~~~--~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~- 434 (1255)
..... .+..+.++.+.+.++.++++.+.+.+.+...+..|+..++..+..+.++++|++|+.++++.++..+.....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 22222 233345666667788899999999999999999999999999999999999999999999876532111000
Q ss_pred ccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------
Q 000845 435 VCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------ 502 (1255)
Q Consensus 435 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------ 502 (1255)
.....+..+.|+++|++|+|+.+ +++|+|+||++++||.++||||+|||||||+++|+|+++|.+|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 00011123569999999999754 3699999999999999999999999999999999999999988
Q ss_pred ------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHH
Q 000845 503 ------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLA 534 (1255)
Q Consensus 503 ------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLA 534 (1255)
+++..+|+|++|.|||+|.+|||||||||+||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 24678999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCC
Q 000845 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582 (1255)
Q Consensus 535 RAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l 582 (1255)
||++++|+|+||||||||||+++++.|.+.+ ....+++|+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 9999999999999999999999998886654 4567899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=484.88 Aligned_cols=473 Identities=22% Similarity=0.281 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000845 139 KVISISAGPLFLKAFISAAEGEIIF---KYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLS 215 (1255)
Q Consensus 139 ~~~~~~~~p~ll~~li~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K~l~l~ 215 (1255)
.-.+....|++++.+++.+++.+.. .......+.+.+++.++.+++...-.+.......++-.....-+|+..+.++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677899999999998632221 1233445566666777777766666666666677777778888999999999
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000845 216 NAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATI-ATLIVMILTVLGNSPLAKLQHK 293 (1255)
Q Consensus 216 ~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l-~g~~~~~~~~~~~~~~~~~~~~ 293 (1255)
.....+..+|++.+.|..-...|.+.+. .+..+.-..+++.+....+++..|.+.. +.+..+.....+...++++..+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 8888888999999999999988888765 3445666777888888899999998543 4444455556677778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 294 YQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEK-LRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTC 372 (1255)
Q Consensus 294 ~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~-~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 372 (1255)
++++++++.|+..+..-+.|.|..+||.|+-|+...+++.. +++.|-..++..+.+...+. .- -..|....++..|
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnf-gQ--~~iFsv~~~~im~ 278 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNF-GQ--KAIFSVALTFIMV 278 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHH-HH--HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866 55566555544444332221 10 0011112222222
Q ss_pred H----HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcceEEEE
Q 000845 373 Y----FLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIK 448 (1255)
Q Consensus 373 ~----~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~i~~~ 448 (1255)
. +..+.+|.+...-..+++..|..|++.+...+..+.++..-+.-.....+.++..... ..| ....++.|+|+
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~-i~~~~~~I~F~ 355 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALP-IELFGGSIEFD 355 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCC-cccCCCcEEEE
Confidence 2 3456789999888889999999999999999999999888877665554443322111 011 11145679999
Q ss_pred eeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------------------------
Q 000845 449 SADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------------- 502 (1255)
Q Consensus 449 ~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------------------------- 502 (1255)
|++|+|+++ +++|+++||+||+||.+||||++||||||++++|+++++ .+|
T Consensus 356 dV~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 999999854 479999999999999999999999999999999999999 777
Q ss_pred -----------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEe
Q 000845 503 -----------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 503 -----------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLD 547 (1255)
+-+..||+|++|.|||+|..||||||||||||||+.+||+|++||
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 236789999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 000845 548 DPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621 (1255)
Q Consensus 548 dp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~ 621 (1255)
||||+||.+|++.|++.. .+.+.+||+|+|.||+++++.+|+|+++++|++.+.|+|+|++..++.+.+++..
T Consensus 513 EaTS~LD~~TE~~i~~~i-~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 513 EATSALDSETEREILDMI-MDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CcccccchhhHHHHHHHH-HHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 999999999999998655 4578899999999999999999999999999999999999999977777777644
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=526.10 Aligned_cols=462 Identities=21% Similarity=0.237 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 126 WKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCA 205 (1255)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 205 (1255)
|+.++..+++.++..++..+.|++++++++.+..+.......+.+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888999999999999999999987322111222333444555555666666666777888888999999999
Q ss_pred HHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000845 206 AISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGN 284 (1255)
Q Consensus 206 ~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~~~~~~~~~ 284 (1255)
.+|+|.++++.....+.++|+++|.+++|++++.+.+. .+..++...+.+++++++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999988777888999999999999999997654 35555555555555544444221223333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000845 285 SPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYG----WLKVLQLQKGYYMVLFWSS 360 (1255)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~----~~~~~~~~~~~~~~~~~~~ 360 (1255)
.++.++..+..++.++..+++.+.+.|.++++++||.|++|+.+.+++.+.-++..+ ..+.......+..++.. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT-L 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 566777778888888999999999999999999999999999998888654433322 22222222222221111 1
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhccccccc
Q 000845 361 PILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAE 440 (1255)
Q Consensus 361 ~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~ 440 (1255)
..++. ..++.+.+..+.+|++.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.... ..+ .+
T Consensus 241 ~~~~~-~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~--~~ 316 (529)
T TIGR02857 241 SVALV-AVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT--AA 316 (529)
T ss_pred HHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC--CC
Confidence 11111 223334444778999999999999999999999999999999999999999999998553221111 111 11
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------------------ 502 (1255)
..+.|+++|++|+|+..+ +++|+|+||++++|+.++|+||+|||||||+++|+|+++|.+|
T Consensus 317 ~~~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 234799999999998543 4899999999999999999999999999999999999999998
Q ss_pred -------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHcc
Q 000845 503 -------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 503 -------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
++++.+|+|.+|.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 2467899999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEE
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLI 594 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl 594 (1255)
+|+|+||||||||||+++++.+++ .+..+.+++|+|+||||++.++.||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTE-ALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHH-HHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999998865 455666899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=571.18 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=175.1
Q ss_pred eEEEEEEEEEeCC-----------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCCEEEEcCEeC
Q 000845 1003 KVEIYDLQIRYRP-----------NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP--TGGKIIIDGLDI 1069 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~-----------~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~--~~G~I~idG~di 1069 (1255)
.+.|+||++.++. +...+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998741 223699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHHhhcccEEEccCCccCC-CchhhhcccC------CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcC
Q 000845 1070 TTIGLYDLRSNLGIIPQDPTLFS-GSVRYNLDPL------SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ 1142 (1255)
Q Consensus 1070 ~~i~~~~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~------~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e 1142 (1255)
. ...+|+.++||+|++.++. .|++|||.+. ...++++..+ ...++++..+|.+. .|+.+|.
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~--~v~~vl~~lgL~~~-------~~~~vg~ 1014 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMM--FVDEVMELVELDNL-------KDAIVGL 1014 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHHHCCChhH-------hCCccCC
Confidence 4 2456788999999998776 4999999642 1223332211 01126777776543 3566664
Q ss_pred CC-CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchh-h-hhcCEEEEEe
Q 000845 1143 DG-ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIAT-V-MDCNMVLSMS 1218 (1255)
Q Consensus 1143 ~G-~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~ 1218 (1255)
.+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. .++|||+++|+++. + ..||++++|+
T Consensus 1015 ~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 33 5799999999999999999999999999999999999999999999864 47899999999984 4 5599999999
Q ss_pred C-CEEEEEcChh
Q 000845 1219 D-GKLVEYDEPK 1229 (1255)
Q Consensus 1219 ~-G~ive~G~~~ 1229 (1255)
+ |+++.+|++.
T Consensus 1095 ~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1095 RGGQVIYSGPLG 1106 (1470)
T ss_pred CCCEEEEECCcc
Confidence 6 8999999864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=518.89 Aligned_cols=203 Identities=22% Similarity=0.310 Sum_probs=168.4
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcc
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
+-.++++|+++.|.++ .++++++||.|.+|++||||||||+|||||+++|.|-..|.+|+|.+.- .-+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVK 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceE
Confidence 3469999999999654 5799999999999999999999999999999999999999999998753 135
Q ss_pred cEEEccCC-ccCC-CchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1081 LGIIPQDP-TLFS-GSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1081 i~~vpQdp-~Lf~-gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+||.+|+- .++. .|+-+++.... ...+.++.. .|.+.++...-. .++| ..||||||-|+.|
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~------~L~~f~F~~~~~------~~~v----~~LSGGEk~Rl~L 450 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA------YLGRFGFTGEDQ------EKPV----GVLSGGEKARLLL 450 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH------HHHHcCCChHHH------hCch----hhcCHhHHHHHHH
Confidence 99999988 3443 37888876433 223555655 677776643322 2333 4699999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE-cChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY-DEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~-G~~~eLl~~ 1234 (1255)
|+.++.+|.+|||||||++||.+|-+.+.++|.+. ..|||+|||+.+.+.. |++|+++++ ++.++ |.+++-.+.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999999999863 4599999999999987 999999999 88887 788776654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=565.34 Aligned_cols=528 Identities=17% Similarity=0.202 Sum_probs=401.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---CCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000845 695 FAYLIFLVAQILQSLWIATYI---PSTSISRL---KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFR 768 (1255)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~ 768 (1255)
++.++..++..+.|+.+.+.. .++..... .+++.+++..++..++.....+.....+.+.-..+...+|+++++
T Consensus 251 ~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ 330 (1560)
T PTZ00243 251 PFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFT 330 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666665433 12221111 112222233334444444555666778888888888999999999
Q ss_pred CCccccc--ccccchhHHHHhchhhHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 769 APMAFYD--STPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFAT 846 (1255)
Q Consensus 769 ~p~~~f~--~~~~G~il~r~s~D~~~id~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 846 (1255)
.+...+. +.++|+++|.++.|++.+...+.. +..+....+.++++++++.....+.+++.++++++++.++.+..+.
T Consensus 331 ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~ 409 (1560)
T PTZ00243 331 ISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKH 409 (1560)
T ss_pred CChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887776 568899999999999999988744 4556667777777777776666666666666666777788888888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 847 AKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSAL 926 (1255)
Q Consensus 847 ~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 926 (1255)
....++.....+....+...|.++|+++||.++||+.|.+++.+..+...+..........+..........++. ++.+
T Consensus 410 ~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~-~~~f 488 (1560)
T PTZ00243 410 QMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMI-AVVF 488 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 888888888888889999999999999999999999999999988777766654444444443332222222222 2222
Q ss_pred HHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcc------cc--------c--
Q 000845 927 CTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPE------LV--------Q-- 990 (1255)
Q Consensus 927 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~------~~--------~-- 990 (1255)
..+....+.++++.+-.++++...+..++..+...+..+....+|++|+.+|++.++.... .. .
T Consensus 489 ~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~ 568 (1560)
T PTZ00243 489 TVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTAC 568 (1560)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccccccccc
Confidence 2333446778888888888888888888888888999999999999999999976431100 00 0
Q ss_pred C-----CC-------C---------------------------CCCCCCCceEEEEEEEEEeC-----------------
Q 000845 991 K-----NS-------P---------------------------APDWPPTGKVEIYDLQIRYR----------------- 1014 (1255)
Q Consensus 991 ~-----~~-------~---------------------------~~~~p~~g~I~~~nvs~~Y~----------------- 1014 (1255)
. .. + +..++..+.+.++|+++.++
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1560)
T PTZ00243 569 QLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHE 648 (1560)
T ss_pred ccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 0 00011124577888777642
Q ss_pred ---------------------CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC
Q 000845 1015 ---------------------PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073 (1255)
Q Consensus 1015 ---------------------~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~ 1073 (1255)
.+..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~--------- 719 (1560)
T PTZ00243 649 ATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA--------- 719 (1560)
T ss_pred ccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE---------
Confidence 12345899999999999999999999999999999999999999999986
Q ss_pred hHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+++|+|+||+|.+|++||+|||.++....++++.+ +++.|++.+.++.+|+|++|.++++|.+|||||||
T Consensus 720 ----~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~------~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkq 789 (1560)
T PTZ00243 720 ----ERSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD------AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKA 789 (1560)
T ss_pred ----CCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH------HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHH
Confidence 35799999999999999999998766554455555 88999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHH-HHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHh
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQN-TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~-~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
|++||||++++|+|+|||||||+||+++.+.+.+ .+....+++|+|+|||+++.+..||+|++|++|++++.|++++++
T Consensus 790 RvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 790 RVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999998877754 455555789999999999999999999999999999999999998
Q ss_pred hcCChHHHHHHHH
Q 000845 1233 RRQDSLFAQLVKE 1245 (1255)
Q Consensus 1233 ~~~~~~f~~l~~~ 1245 (1255)
+. +.|.++...
T Consensus 870 ~~--~~~~~~~~~ 880 (1560)
T PTZ00243 870 RT--SLYATLAAE 880 (1560)
T ss_pred hC--hHHHHHHHh
Confidence 64 568887764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=525.02 Aligned_cols=191 Identities=22% Similarity=0.304 Sum_probs=160.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-++++|++++|.. ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEccCCcc-CCCchhhhcccCC-CCC-hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1083 IIPQDPTL-FSGSVRYNLDPLS-QFT-DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1083 ~vpQdp~L-f~gTIr~Nl~~~~-~~s-d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
|+||++.+ ++.|+++|+.... ... +....+ +++..++.+.... ....||||||||++|||
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~------~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSE------IIKPLQLERLLDK-----------NVKDLSGGELQRVAIAA 466 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHH------HHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 99999875 4569999996421 122 122222 6777777654322 23479999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||+++|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 467 aL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 467 CLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999999998643 7899999999999876 999999965 8887776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=481.86 Aligned_cols=239 Identities=38% Similarity=0.690 Sum_probs=229.1
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|.|+|+||+++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|++||.++.+++...+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred EEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1082 ~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
+||||+|.+|++|+++|+++++..+++++++ +++.+++.+++..+|++||+.++++|.+||||||||+|||||+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~------~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWK------VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHH------HHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999887778899998 9999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1162 L~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~ 1241 (1255)
+++|+||||||||++||+++++.+++.|++.+.++|+|+||||++++..||||+||++|++++.|+|++|+++ .+.|++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~ 232 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQ 232 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHH
Confidence 9999999999999999999999999999988889999999999999999999999999999999999999996 689999
Q ss_pred HHHHHHH
Q 000845 1242 LVKEYWS 1248 (1255)
Q Consensus 1242 l~~~~~~ 1248 (1255)
++++.+.
T Consensus 233 ~~~~~~~ 239 (275)
T cd03289 233 AISPSDR 239 (275)
T ss_pred HHhhcch
Confidence 9998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=468.81 Aligned_cols=482 Identities=20% Similarity=0.300 Sum_probs=351.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccchhH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 134 FFALIKVISISAGPLFLKAFISAAEGEIIFKYE-IYSLAISLFLVKC--VESLAGRHWFFQSRLTGLKIRSSLCAAISSK 210 (1255)
Q Consensus 134 ~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~l~~~iy~K 210 (1255)
++..+.-++...-|.+.+.+++.+..+....+. .+.+++..|+-.. +..+..+.-.|..-++.----..+-..+|++
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 444455566777799999999988865443332 2233322222111 1123333333333333333334556677777
Q ss_pred HhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHH
Q 000845 211 QLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWF-HQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMILTVLGNSPLA 288 (1255)
Q Consensus 211 ~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~~~~~~~~~~~ 288 (1255)
.+.||....-...+|++...|...++.+. +..++ ..+--..+.+++++++.+....| -.++.+..|.+...+...+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT 380 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKIT 380 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeee
Confidence 77776544344568999998887776665 33222 22222334555555544444433 44444555555556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 289 KLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVI----EKLRSEEYGWLKVLQLQKGYYMVLFWSSPILI 364 (1255)
Q Consensus 289 ~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i----~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~ 364 (1255)
.+..++++++...-.+--....+.|-+..+||.|+.|++..+++ .+.-++|-+.+....++......+. .--++
T Consensus 381 eWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii--~lgll 458 (790)
T KOG0056|consen 381 EWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII--GLGLL 458 (790)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHh
Confidence 88888888887776666666778888999999999998766664 4445555544433333332222211 11123
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcchhcccccccCcc
Q 000845 365 GAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE-LQNSDMQQVCSRAELEH 443 (1255)
Q Consensus 365 ~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e-~~~~~~~~~~~~~~~~~ 443 (1255)
...-+.+|.+..+.+|++...-..+..-.|.+||+.+...+..+++..+-++|+.+.+++++ +.+.+. ..|-.. .++
T Consensus 459 ~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~-a~pl~~-~~G 536 (790)
T KOG0056|consen 459 AGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG-APPLKV-TQG 536 (790)
T ss_pred hhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC-CCCccc-cCC
Confidence 33445666666788999987777778888999999999999999999999999999998754 322211 111111 568
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC---------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG--------------------- 502 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G--------------------- 502 (1255)
.|+|+|++|+|++. +|+|+||||++++|+.+|+|||+|+||||+++.|.++++..+|
T Consensus 537 ~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 89999999999764 6999999999999999999999999999999999999999988
Q ss_pred ----------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 503 ----------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 503 ----------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
+.|..+|+|+.|.|||+|-.||||+|||||+||++.++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 2366899999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc-chHHHHHHHH
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT-SQEFQDLVNA 621 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~-~~~~~~l~~~ 621 (1255)
|++|||+|||||.++++.| +.++..+.++||.|+|+||++++-+||.|+++++|+|+|.|+|+|+..+ ++.|.++++.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999888 8899889999999999999999999999999999999999999999976 7789999875
Q ss_pred hh
Q 000845 622 HK 623 (1255)
Q Consensus 622 ~~ 623 (1255)
+.
T Consensus 774 qq 775 (790)
T KOG0056|consen 774 QQ 775 (790)
T ss_pred HH
Confidence 44
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=454.74 Aligned_cols=498 Identities=21% Similarity=0.276 Sum_probs=345.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 116 SILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEII-FKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194 (1255)
Q Consensus 116 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1255)
++++..++ .|+.++++.++.++..+....--.+=+++|..-.-... ....-++-+++.=+..+.++....--...++.
T Consensus 6 p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~ 84 (573)
T COG4987 6 PYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHD 84 (573)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444444 66677777666665554443322223444432111111 11122222334444455566555444666777
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHH
Q 000845 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCI--AVVVVYYSVGLATIA 272 (1255)
Q Consensus 195 ~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v--~~~lL~~~lG~~~l~ 272 (1255)
...++-+.+.-.+|+|..-++......+.+|++.|.+..|++.++...-.+...|...+-++. .+.+-+.-++.+.+.
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 788999999999999999998877778899999999999999999987665555543333322 222324444456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 273 TLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY 352 (1255)
Q Consensus 273 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~ 352 (1255)
++..++.++.+.....+...+..++....+..=-+...+.++|..-.+++|-++.+.+.+++.-..=.+.-++...+...
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~ 244 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL 244 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555556666667766776666666666678889999999999999999999988765333222222222222222
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000845 353 YMVLFWSSPILI---GAATLLTCYFLGIPLN-PSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQ 428 (1255)
Q Consensus 353 ~~~~~~~~~~~~---~~~~f~~~~~~~~~L~-~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~ 428 (1255)
..++......++ ..++++.-.-. +..+ +..+...+..|..+..-....|.++..+.+...|.+|+.+.++.++..
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a~~~~~-G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMAAQVGA-GALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcC-CCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 222221111111 11222221111 3333 233333333333333212233366777888999999999999876543
Q ss_pred CcchhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------
Q 000845 429 NSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------ 502 (1255)
Q Consensus 429 ~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------ 502 (1255)
..+.+..+. .+..++++|++|+|+.++ .++|+|+||++++||.+||+|++|||||||++.|.|-++|.+|
T Consensus 324 ~~~~~~~~~---~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 324 TFPDEQTAT---TGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred CCCccccCC---ccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 322111111 222799999999999764 5899999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------cccCCCCCCCccccccCCCcCChHH
Q 000845 503 -------------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQ 527 (1255)
Q Consensus 503 -------------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQ 527 (1255)
.-+...|+|.+|.+||+|..|||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 1245789999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhH
Q 000845 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDH 607 (1255)
Q Consensus 528 kqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~e 607 (1255)
|||++|||++.+|++++||||||.+||+.|++++.+.++ ..++|||+|+||||+..++.+|+|++|++|+++++|+|.+
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 999999999999999999999999999999999986655 4567999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHH
Q 000845 608 LLVTSQEFQDLVN 620 (1255)
Q Consensus 608 l~~~~~~~~~l~~ 620 (1255)
++.+++.|.++.+
T Consensus 559 Ll~~~g~~~~l~q 571 (573)
T COG4987 559 LLANNGRYKRLYQ 571 (573)
T ss_pred hhccccHHHHHhc
Confidence 9998888877653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=493.66 Aligned_cols=475 Identities=19% Similarity=0.157 Sum_probs=336.8
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 115 PSILRALIS-CHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSR 193 (1255)
Q Consensus 115 ~~l~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1255)
+.+++ +++ .+++.++.+.++.++..++..+.|.+++.+++...... . ....+.+++ .++..++.....+...
T Consensus 6 ~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (555)
T TIGR01194 6 GEILA-LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGL---CLLALLFRIGADIFPA 78 (555)
T ss_pred HHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444 566 77888888889999999999999999998875321110 0 111111122 2222333444455667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000845 194 LTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIAT 273 (1255)
Q Consensus 194 ~~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g 273 (1255)
+.+.++...+...+|+|.++++.....+.++|++++.+++|++.+.+....+..+....+.++++++++++.-.+.+++.
T Consensus 79 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 79 YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 78888888999999999999998877788999999999999999998765555555555555555555443322244444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 274 LIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDS--YFKNVIEKLRSEEYGWLKVLQLQKG 351 (1255)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~--~~~~~i~~~R~~El~~~~~~~~~~~ 351 (1255)
++++++.+.+..+..++..+..++..+..++..+...|.+.|+++||.++.++ ...+++.+.-++-.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444545555556666777777888888899999999999999999999854 3334433322221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-
Q 000845 352 YYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS- 430 (1255)
Q Consensus 352 ~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~- 430 (1255)
....+....+.++..+.+. +....+.++.+.+++.+.+...+..|+..+...++.+.++.+|++||.++++.++.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~ 317 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALF-AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPE 317 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 1111111111111111110 01112578999999999999999999999999999999999999999999864221100
Q ss_pred ---ch-hcc--cccccCcceEEEEeeEEEecCCC--CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC
Q 000845 431 ---DM-QQV--CSRAELEHSIFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 431 ---~~-~~~--~~~~~~~~~i~~~~~~f~w~~~~--~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G 502 (1255)
+. ... .........|+++|++|+|+..+ .+++|+|+||++++|++++|+||+|||||||+++|+|+++|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G 397 (555)
T TIGR01194 318 LELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397 (555)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 00 000 00001235799999999997532 24799999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------------------cccCCCCCCCccccccCCCcCC
Q 000845 503 ----------------------------------------------------------MDLKMLPFGDLTQIGERGVNLS 524 (1255)
Q Consensus 503 ----------------------------------------------------------~Di~~lp~gd~T~iGe~G~~LS 524 (1255)
.++..+|+|++|. .+||
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LS 472 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALS 472 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCC
Confidence 1244567777763 7899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccccCCEEEEEeCCEEEEe
Q 000845 525 GGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLPAFDSILLISGGEIIQA 602 (1255)
Q Consensus 525 GGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~ 602 (1255)
|||||||+||||++++|+|+|||||||+||+++++.+.+.++... .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998877666443 468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=481.27 Aligned_cols=470 Identities=17% Similarity=0.149 Sum_probs=329.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 117 ILRALISCHWKSILFSGFFALIKVISISA-GPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLT 195 (1255)
Q Consensus 117 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1255)
+++.+++.+++.++...++.++..++.++ .|++.+.+++.+... ....+.+++.+++..+ +.....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMA----VTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 46677788888888888888888888887 477778888765421 1111111111111111 222334445556
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000845 196 GLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLI 275 (1255)
Q Consensus 196 ~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~ 275 (1255)
+.++...+...+|+|.++++....++..+|++.|.++.|++.+..++..+..++...+.++++++++++.-++.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66777778888899999998877788899999999999999998876666777778887777777776554446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 276 VMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYA--WDSYFKNVIEKLRSEEYGWLKVLQLQKGYY 353 (1255)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~--wE~~~~~~i~~~R~~El~~~~~~~~~~~~~ 353 (1255)
++++...+..++.++..+..++..+..++..+.+.|.+++++++++.+ .++.+.++..+..++-.+...+........
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 666666777788888888889999999999999999999999997433 223444444432222111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 000845 354 MVLFWSSPILIGAATLLTCYFLGI---PLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS 430 (1255)
Q Consensus 354 ~~~~~~~~~~~~~~~f~~~~~~~~---~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~ 430 (1255)
..... ++..+.++.+.+.++ ..+...+.........+..|+..+...+..+.++..+++||.++++.|+.++.
T Consensus 236 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 236 VNWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 11111 111111222222211 12222222222223336689999999999999999999999999865432211
Q ss_pred chhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cc
Q 000845 431 DMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MD 504 (1255)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~D 504 (1255)
. ...+ .+....++++|++|+|+.+ +++|+|+||++++||.++|+||+|||||||+++|+|+++|.+| .|
T Consensus 312 ~-~~~~--~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 P-RPQA--FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred c-cccc--cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 1 0011 1122479999999999743 4799999999999999999999999999999999999999998 00
Q ss_pred ------------------------------------------cCCCCCCCccccccC---CCcCChHHHHHHHHHHHHcc
Q 000845 505 ------------------------------------------LKMLPFGDLTQIGER---GVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 505 ------------------------------------------i~~lp~gd~T~iGe~---G~~LSGGQkqRIaLARAly~ 539 (1255)
++.++.++.+..+++ |.+||||||||++||||+++
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~ 466 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE 466 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc
Confidence 122333444445554 88999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCEEEEe
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLPAFDSILLISGGEIIQA 602 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~ 602 (1255)
+|+++|||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 467 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 467 ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999888665543322 48999999999999999999999999999876
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-50 Score=459.99 Aligned_cols=213 Identities=21% Similarity=0.381 Sum_probs=171.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH-Hhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY-DLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~-~lR~~i 1081 (1255)
.++++|++.. ..++|+||++++||.+||.|--|||+|-++++|+|..++.+|+|.+||.++.--++. ..+..|
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 4677887642 158999999999999999999999999999999999999999999999988766655 688999
Q ss_pred EEEccCCc---c-CCCchhhhcccCC--CCChHHHHhccCchhHHHhccHHHHHHhhh---cCccchhcCCCCCCChhHH
Q 000845 1082 GIIPQDPT---L-FSGSVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKK---EGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1082 ~~vpQdp~---L-f~gTIr~Nl~~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp---~gldt~v~e~G~~LSgGQr 1152 (1255)
+|||-|-. | ..-+|++|+.... .++..-+.+ ..-++.-..+++.++. .+.+.++ .+||||.+
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~-----~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQ 407 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLID-----RRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQ 407 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhhhccccccC-----hHHHHHHHHHHHHhcCcccCCccchh----hcCCchhh
Confidence 99999874 4 4569999996431 111000111 1333444455665542 2444555 47999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|+++|||+|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+||-.+..+.. ||||+||.+|+|+..=+.++
T Consensus 408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 57999999999999875 99999999999997544443
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=428.62 Aligned_cols=482 Identities=20% Similarity=0.233 Sum_probs=375.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 115 PSILRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRL 194 (1255)
Q Consensus 115 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1255)
.....+....+++.++..+++..+-.++.++.|+.+-++-|-+-...+ ...-..+.+....++++..++..--.+...|
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPTLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777778888888888888888999999988777665543221 2223445555666777777888878888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000845 195 TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-----WFHQIWSTSLQLCIAVVVVYYSVGLA 269 (1255)
Q Consensus 195 ~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-----~~~~~~~~pl~i~v~~~lL~~~lG~~ 269 (1255)
++.++-..|..-||.-+++........-...+. -.|.+.+..++. -+.+....|+-++++ |++...+|+.
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~ 164 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLI 164 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999987544332221112233 357777766542 344555578766655 6777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 270 TIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQ 349 (1255)
Q Consensus 270 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~ 349 (1255)
+++|.++++++..++-.+++. -.++-.+..-+|....+..+.|..+|+.+|..+...++..+....-+....+..-.
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999998888888877655554 44556667778889999999999999999999999999888777777666555444
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000845 350 KGYYMVLFWSSPIL--IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPEL 427 (1255)
Q Consensus 350 ~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~ 427 (1255)
......+.-..-.+ ..+...|.|....+++|++.++..--+..-.-.|+-.......++..++.|.+|++++|.....
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33333222222222 3345567777778999999999887778888889999999999999999999999999986433
Q ss_pred CCcchhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----
Q 000845 428 QNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----- 502 (1255)
Q Consensus 428 ~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G----- 502 (1255)
..... ..| . +++.+.++++++.-|.. .+|+|+|+||++++|+-++||||+|||||||.++|.|-.+|.+|
T Consensus 322 ~~~~m-~LP--~-P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 322 AAERM-PLP--A-PQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred ccCCC-CCC--C-CCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 22221 122 2 66789999999976554 47999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------cccCCCCCCCccccccCCCcCChH
Q 000845 503 --------------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGG 526 (1255)
Q Consensus 503 --------------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGG 526 (1255)
+=|..||+||+|.|||.|.+||||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 114579999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChh
Q 000845 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYD 606 (1255)
Q Consensus 527 QkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~ 606 (1255)
|||||+||||+|.||.+++||||-|.||..-+..+.+.+..-..+|.|+|+||||++.+..+|+|++|++|++...|+-+
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999999998888644333345799999999999999999999999999999999988
Q ss_pred HHhh
Q 000845 607 HLLV 610 (1255)
Q Consensus 607 el~~ 610 (1255)
|.++
T Consensus 557 eVLa 560 (580)
T COG4618 557 EVLA 560 (580)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=457.20 Aligned_cols=233 Identities=22% Similarity=0.348 Sum_probs=205.6
Q ss_pred CCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCC
Q 000845 996 PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDIT 1070 (1255)
Q Consensus 996 ~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~ 1070 (1255)
..||..+.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999999999997555679999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHHhhcccEEEccCCccCCCchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1071 --TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1071 --~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
.++...+|++++||||+|.+|++|+++||++. ...++++.|+. ....+++.++++ .++++.+++.|.
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~-~~~~~l~~~~L~-------~~l~~~~~~~~~ 224 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK-IVEKSLKSAALW-------DEVKDDLDKAGN 224 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHH-HHHHHHHHcCCc-------chhhhhhhCCcc
Confidence 45667899999999999999999999999832 23455555430 011256666653 346678899999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
+||||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999988 99999999999999
Q ss_pred EcChhHHhhcCC
Q 000845 1225 YDEPKKLLRRQD 1236 (1255)
Q Consensus 1225 ~G~~~eLl~~~~ 1236 (1255)
.|+|+++..++.
T Consensus 305 ~g~~~~l~~~~~ 316 (329)
T PRK14257 305 AGETKTIFIHPK 316 (329)
T ss_pred eCCHHHHhcCCC
Confidence 999999988755
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=397.14 Aligned_cols=226 Identities=27% Similarity=0.430 Sum_probs=196.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC-CCChHHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT-TIGLYDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~-~i~~~~lR~~i 1081 (1255)
-|+++||+.+|.. ..||+|||++|++||.++||||||||||||+++|.++.+|++|+|.|||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999963 46999999999999999999999999999999999999999999999998773 33788899999
Q ss_pred EEEccCCccCCC-chhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
|+|+|+..||+- |+-||+.... ..+.+|..+ ...+.|+++||.+..+..|. +||||||||+|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~--~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVA 146 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE--KALELLEKVGLADKADAYPA-----------QLSGGQQQRVA 146 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH--HHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHH
Confidence 999999999976 9999997432 233333332 11337889999988887774 69999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||||.-+|+|+++|||||+||||.-..+.++++++. .|.|+|+|||.+.+.++ +|||+.||+|+|+|.|+|+++..+
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998876 47899999999999988 899999999999999999999998
Q ss_pred CChH-HHHHH
Q 000845 1235 QDSL-FAQLV 1243 (1255)
Q Consensus 1235 ~~~~-f~~l~ 1243 (1255)
|... -++.+
T Consensus 227 p~~~R~~~FL 236 (240)
T COG1126 227 PKSERTRQFL 236 (240)
T ss_pred CCCHHHHHHH
Confidence 7643 34433
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=418.91 Aligned_cols=413 Identities=20% Similarity=0.279 Sum_probs=316.2
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHH
Q 000845 201 SSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWF-HQIWSTSLQLCIAVVVVYYSVGLAT-IATLIVMI 278 (1255)
Q Consensus 201 ~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~v~~~lL~~~lG~~~-l~g~~~~~ 278 (1255)
..+....|++.+.|+.....+..+|.+.--+..-...|....+++ ..+....+++++.+.++|+..||.. .+.++.++
T Consensus 15 r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~ 94 (497)
T COG5265 15 RVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVI 94 (497)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 345566777777777554444455655444444444455544432 2333456799999999999999844 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000845 279 LTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSE----EYGWLKVLQLQKGYYM 354 (1255)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~----El~~~~~~~~~~~~~~ 354 (1255)
+...+...+..+....++..+++-.+.....-+.|-+-.+||.|+-|+.+..+..+..+. +++......++.....
T Consensus 95 lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 95 LYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 555566666666666777766666666677889999999999999999998887664444 3332222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcchh
Q 000845 355 VLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE-LQNSDMQ 433 (1255)
Q Consensus 355 ~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e-~~~~~~~ 433 (1255)
.++. ..+....+....-+..+.+|.+...-.-++...+..|++.+...+..+-++++.++++.+-+..+- ..+.+..
T Consensus 175 ~I~~--~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda 252 (497)
T COG5265 175 AIFS--TGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA 252 (497)
T ss_pred HHHH--HHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCC
Confidence 1111 111222223333345688999999888889999999999999999999999999999999988653 2222111
Q ss_pred cccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----------
Q 000845 434 QVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG----------- 502 (1255)
Q Consensus 434 ~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G----------- 502 (1255)
.+-.....+.|.|++++|.|..+ +|+|+++||++|+|+.++|||++|+||||+++.|.+++++.+|
T Consensus 253 -~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 253 -PPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred -ccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 11110145679999999999765 5899999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHH
Q 000845 503 --------------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQ 532 (1255)
Q Consensus 503 --------------------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIa 532 (1255)
..+..+|+|++|.|||+|-.||||+|||||
T Consensus 330 vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred hHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 247889999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 533 LARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
+||++.++|+|++|||+|||||.+|++.| +..++...+|+|.++++||++++-.||.|+||++|+|+|.|+|+||+..+
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcC
Confidence 99999999999999999999999999877 67778888999999999999999999999999999999999999999999
Q ss_pred hHHHHHH
Q 000845 613 QEFQDLV 619 (1255)
Q Consensus 613 ~~~~~l~ 619 (1255)
+.|.+++
T Consensus 489 g~ya~mw 495 (497)
T COG5265 489 GLYAEMW 495 (497)
T ss_pred ChHHHHh
Confidence 9888876
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=424.59 Aligned_cols=223 Identities=20% Similarity=0.352 Sum_probs=174.6
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeC-CCCChHHhh-
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI-TTIGLYDLR- 1078 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di-~~i~~~~lR- 1078 (1255)
..-++++|++..-+.+ -+.+++|||++++||++||.|-.|.|-+-|+.+|.|+..+.+|+|.++|.|+ ...+....|
T Consensus 255 ~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4468999999875433 3589999999999999999999999999999999999999999999999997 677777765
Q ss_pred cccEEEccCCc----cCCCchhhhcccCCCCChHHHHhc-cCchhHHHhccHHHHHHhh---hcCccchhcCCCCCCChh
Q 000845 1079 SNLGIIPQDPT----LFSGSVRYNLDPLSQFTDQEIWEV-TIPSQVLEKCQLREVIQEK---KEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1079 ~~i~~vpQdp~----Lf~gTIr~Nl~~~~~~sd~ei~~~-~~~~~al~~~~l~~~i~~l---p~gldt~v~e~G~~LSgG 1150 (1255)
..++|||.|.+ ..+-|+.||+-+.....+ ....- .....++++ ...+.++++ +.+.++++ .+||||
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~-~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~a----~~LSGG 407 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK-PFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPA----RSLSGG 407 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhcccc-ccccccccCHHHHHH-HHHHHHHHcCccCCCCCcch----hhcCCc
Confidence 46999999985 556799999864321111 00000 000001111 112222221 23444444 479999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
++||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. .|+.|++||-+|+.+.. ||||.||.+|+|+....+
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 9999999999999999999999999999999999999888765 58899999999999977 999999999999998887
Q ss_pred hH
Q 000845 1229 KK 1230 (1255)
Q Consensus 1229 ~e 1230 (1255)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 76
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=434.30 Aligned_cols=194 Identities=20% Similarity=0.310 Sum_probs=158.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|.|+||+|.|+++ +..+++++|-|.++++||+|||||+|||||++++.|.+.|+.|.|.-.- ..+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccch
Confidence 59999999999755 4799999999999999999999999999999999999999999886432 23344
Q ss_pred EEccC---CccCCCchhhhccc-CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQD---PTLFSGSVRYNLDP-LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQd---p~Lf~gTIr~Nl~~-~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
+..|. -..++-|.-+++.+ +.+..+.+.|. ..+.++||....+..|. .+||+|||.|+++|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r-----~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMR-----SILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFA 521 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHH-----HHHHHhCCCccccccch----------hhcccccchhHHHH
Confidence 44453 34566677777764 23233334443 28999998755444333 47999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
|+++++|.||+|||||++||.+|-..+.++|.++ ..+||+|+|+...|.. +++|++.++|.+...
T Consensus 522 ~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 522 RLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred HHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999999999999999999864 4589999999999988 899999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=407.79 Aligned_cols=230 Identities=25% Similarity=0.411 Sum_probs=196.7
Q ss_pred EEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh---HHh
Q 000845 1004 VEIYDLQIRYRPN---APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL---YDL 1077 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~---~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~---~~l 1077 (1255)
|++++|++.|+.. ...+|+||||+|++||+.||+|+||||||||++++-++-+|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 3569999999999999999999999999999999999999999999999999887775 456
Q ss_pred hcccEEEccCCccCC-Cchhhhccc-CC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1078 RSNLGIIPQDPTLFS-GSVRYNLDP-LS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~-gTIr~Nl~~-~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
|++||+|+|++.|++ -|+.+|+.+ .. ..+.+|+.+ ...+.|+.+||.|....-| .+|||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~--RV~elLelVgL~dk~~~yP-----------~qLSGGQKQ 148 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ--RVAELLELVGLSDKADRYP-----------AQLSGGQKQ 148 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHH--HHHHHHHHcCChhhhccCc-----------hhcCcchhh
Confidence 789999999999998 699999973 21 345566543 1223677777776655444 589999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|++|||||..+|+||+.|||||+|||+|.+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+-.+
T Consensus 149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 9999999999999999999999999999999999988653 37899999999999988 99999999999999999999
Q ss_pred HhhcCCh-HHHHHHHHH
Q 000845 1231 LLRRQDS-LFAQLVKEY 1246 (1255)
Q Consensus 1231 Ll~~~~~-~f~~l~~~~ 1246 (1255)
+..+|.. .=++++.+.
T Consensus 229 vF~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 229 VFANPKHAITQEFIGET 245 (339)
T ss_pred hhcCcchHHHHHHHHhh
Confidence 9998744 445555544
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=441.94 Aligned_cols=458 Identities=14% Similarity=0.102 Sum_probs=327.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 128 SILFSGFFALIKVISISAGPLFLKAFISAAEGEIIF-KY-EIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIRSSLCA 205 (1255)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 205 (1255)
.++...++.++.+++....|.+.+.+++.+...+.. .. ..+.+++.+++. +++.....|...++..++|..++.
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPA----SFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888899999999999999987654321 11 112222222333 333334445566667777777777
Q ss_pred HHHHHHhcCCh----hhhccCChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 000845 206 AISSKQLRLSN----AAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGL-ATIATLIVMIL 279 (1255)
Q Consensus 206 ~iy~K~l~l~~----~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~lL~~~lG~-~~l~g~~~~~~ 279 (1255)
.++++.++-.. ...++ .+|++.+.+++|++.+.+.+. .+..+...++.++++++.++..++| .+++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 77777765321 11222 579999999999999988654 4556667777788788888877888 44555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000845 280 TVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWS 359 (1255)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~ 359 (1255)
...+..++.+.+.+..++..+..++-.+..+|.++++++||+|+-|+.+.++..+.-++-.+...+.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77778888888999999999999999999999999999999999999988887765444444444444333333222211
Q ss_pred H----HHHHHHHHHHHHHHh-C----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000845 360 S----PILIGAATLLTCYFL-G----IPLNPSNVFTF----LATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE 426 (1255)
Q Consensus 360 ~----~~~~~~~~f~~~~~~-~----~~L~~~~vft~----l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e 426 (1255)
. ...+..+..+..++. . +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222232222 1 56887765442 334667789999999999999999999999999997522
Q ss_pred C-CC-----cchhc-------------c---cccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCC
Q 000845 427 L-QN-----SDMQQ-------------V---CSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGA 484 (1255)
Q Consensus 427 ~-~~-----~~~~~-------------~---~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~Gs 484 (1255)
. +. ..... . .......+.|+++|++|+|+.+ +++|+|+||++++||.++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 00 00000 0 0000123469999999999743 3799999999999999999999999
Q ss_pred CHHHHHHHHhccCCCCCCc--------------c-----------c-------------------------------CCC
Q 000845 485 GKSTLLAAILGELPRLQGM--------------D-----------L-------------------------------KML 508 (1255)
Q Consensus 485 GKSTLL~~llGe~~~~~G~--------------D-----------i-------------------------------~~l 508 (1255)
|||||+++|+|++++.+|. + + ..-
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 9999999999999988871 0 0 001
Q ss_pred CCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccC
Q 000845 509 PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF 588 (1255)
Q Consensus 509 p~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~a 588 (1255)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+.+++.+.+ .+.. .++|+|+|||+++.++.|
T Consensus 570 ~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~-~l~~--~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 570 EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR-LCRE--FGITLFSVSHRKSLWKYH 645 (659)
T ss_pred cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHH--cCCEEEEEeCchHHHHhC
Confidence 334445544 457999999999999999999999999999999999999888765 4433 389999999999999999
Q ss_pred CEEEEEeC
Q 000845 589 DSILLISG 596 (1255)
Q Consensus 589 D~Iivl~~ 596 (1255)
|+|++|++
T Consensus 646 d~il~l~~ 653 (659)
T TIGR00954 646 EYLLYMDG 653 (659)
T ss_pred CEEEEEeC
Confidence 99999974
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=412.05 Aligned_cols=240 Identities=48% Similarity=0.811 Sum_probs=221.7
Q ss_pred CCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhc
Q 000845 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1000 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~ 1079 (1255)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999654356999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
.++|+||+|.+|++|+++|+++.....++++++ +++.+++.+.+..+|.|+++.+++.+.+||+|||||++|||
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~------~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWE------ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHH------HHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 999999999999999999998654344555665 88889999999999999999999999999999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
|++++|++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~ 249 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVF 249 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHH
Confidence 99999999999999999999999999999998777899999999999998999999999999999999999998777888
Q ss_pred HHHHHH
Q 000845 1240 AQLVKE 1245 (1255)
Q Consensus 1240 ~~l~~~ 1245 (1255)
+.++..
T Consensus 250 ~~~~~~ 255 (257)
T cd03288 250 ASLVRT 255 (257)
T ss_pred HHHHhc
Confidence 887753
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=376.90 Aligned_cols=224 Identities=24% Similarity=0.407 Sum_probs=197.3
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-----CEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG-----GKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~-----G~I~idG~di~~--i~~ 1074 (1255)
..++++|+++.|. ...+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4689999999996 3469999999999999999999999999999999999999876 999999999965 678
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
..||+++|+|+|.|.-|+.||+||+.+.. ...+.++.+ ..+++|+++.||+-+... | .+.+..|||||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~lde--iVe~sLk~AaLWdEVKDr---L----~~sa~~LSGGQ 154 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE--IVESSLKKAALWDEVKDR---L----HKSALGLSGGQ 154 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHH--HHHHHHHHhHhHHHhHHH---h----hCCccCCChhH
Confidence 89999999999999999999999997542 122222222 123599999999988643 3 34567899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
+|||||||||.-+|+||+||||||+|||.+...|++.|.++.++-|+++|||.+.-... +|+...+-.|+++|+|..++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999999999999889999999999998766 89999999999999999999
Q ss_pred HhhcCC
Q 000845 1231 LLRRQD 1236 (1255)
Q Consensus 1231 Ll~~~~ 1236 (1255)
+..+|.
T Consensus 235 iF~~P~ 240 (253)
T COG1117 235 IFTNPK 240 (253)
T ss_pred hhcCcc
Confidence 988764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=385.64 Aligned_cols=222 Identities=29% Similarity=0.482 Sum_probs=195.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+|+|||++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999996 3569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHH--HHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLR--EVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|-|.--||+- ||.+||..-. ..+.+++.+ ...+.++.++|. ++....| ..|||||+||+.+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~--r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH--HHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999976 9999996322 345555543 112367777774 3555555 4699999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||..+|+|++||||.++|||-|...+|+-+.+..+ ++|+|+|||+++.... +|||.||++|+|+.+|+|++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998876543 7899999999998765 999999999999999999999999
Q ss_pred CChHHH
Q 000845 1235 QDSLFA 1240 (1255)
Q Consensus 1235 ~~~~f~ 1240 (1255)
|...|-
T Consensus 227 Pan~FV 232 (309)
T COG1125 227 PANDFV 232 (309)
T ss_pred ccHHHH
Confidence 877664
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=401.53 Aligned_cols=234 Identities=31% Similarity=0.570 Sum_probs=213.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999996544569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
+||++.+|+.|+++|+..... .+.+++.+ +++..++.+++..+|.|+++.....+.+||||||||++||||++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIE------AAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHH------HHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999985432 34455554 67788899999999999999998889999999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|+++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYL 233 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHH
Confidence 999999999999999999999999999988778999999999999988999999999999999999999876 6778776
Q ss_pred HH
Q 000845 1243 VK 1244 (1255)
Q Consensus 1243 ~~ 1244 (1255)
++
T Consensus 234 ~~ 235 (237)
T cd03252 234 YQ 235 (237)
T ss_pred Hh
Confidence 64
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=393.69 Aligned_cols=221 Identities=52% Similarity=0.957 Sum_probs=207.2
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|.++++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999975445699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1082 ~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
+|+||+|.+|++|+++|++++.....+++.+ +++..++.+++..+|.|+++..++.+.+||+|||||++||||+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~------~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ------ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHH------HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999998766666677776 8899999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcCh
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1162 L~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1228 (1255)
+++|+++||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999999999988778999999999999989999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=389.58 Aligned_cols=232 Identities=34% Similarity=0.575 Sum_probs=209.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996443369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
+||+|.+|+.|+++|+..... .+.+++.+ .++..++.+++..+|.|+++..+....+||+|||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEE------AARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHH------HHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999986432 34444444 67788899999999999999998889999999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
++|+++||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|+.+
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 999999999999999999999999999988788999999999999988999999999999999999999875 5555543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=367.26 Aligned_cols=226 Identities=27% Similarity=0.438 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC-hHHhhc
Q 000845 1003 KVEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG-LYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~-~~~lR~ 1079 (1255)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999996432 25999999999999999999999999999999999999999999999998775543 335788
Q ss_pred ccEEEccCCcc-CC--Cchhhhcc-cCCC----CChHHHHhccCchhHHHhccHHH-HHHhhhcCccchhcCCCCCCChh
Q 000845 1080 NLGIIPQDPTL-FS--GSVRYNLD-PLSQ----FTDQEIWEVTIPSQVLEKCQLRE-VIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1080 ~i~~vpQdp~L-f~--gTIr~Nl~-~~~~----~sd~ei~~~~~~~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
.+.+|+|||.- ++ -||++-|. |... -..+++++ +|+.+||.+ +....| ..||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~------~L~~VgL~~~~l~R~P-----------~eLSGG 145 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE------LLDQVGLPPSFLDRRP-----------HELSGG 145 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHH------HHHHcCCCHHHHhcCc-----------hhcChh
Confidence 89999999962 21 25555553 2221 22344666 899999864 444445 469999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCc--EEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANC--TVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~--TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||+||||||.-+|++||||||||+||.-..+.|.+.+.+..+++ |.|+|||+++.+.. ||||+||++|+++|.++
T Consensus 146 Q~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 9999999999999999999999999999999999999998876654 99999999999988 99999999999999999
Q ss_pred hhHHhhcCChHHHHHHHH
Q 000845 1228 PKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1228 ~~eLl~~~~~~f~~l~~~ 1245 (1255)
-.++...+...|.+.+-+
T Consensus 226 ~~~l~~~~~h~ytr~Ll~ 243 (252)
T COG1124 226 TEELLSHPSHPYTRELLE 243 (252)
T ss_pred hhhhhcCCccHHHHHHHH
Confidence 999998766667655443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=361.34 Aligned_cols=229 Identities=27% Similarity=0.457 Sum_probs=198.6
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH---Hhh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY---DLR 1078 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~---~lR 1078 (1255)
..|++++|+++|. ...|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4699999999994 45699999999999999999999999999999999999999999999999999988865 469
Q ss_pred cccEEEccCCccCCC-chhhhccc-CC---CCChHHHHhccCchhHHHhccHHHH-HHhhhcCccchhcCCCCCCChhHH
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDP-LS---QFTDQEIWEVTIPSQVLEKCQLREV-IQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~g-TIr~Nl~~-~~---~~sd~ei~~~~~~~~al~~~~l~~~-i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
+++|+++|...||+. ||+||+.+ .. +.+++++.+. ...-|+.|||... .+..| +.||||.+
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l--v~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL--VLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH--HHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 999999999999987 99999974 33 3455555541 1124667777766 33344 57999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
.|.+||||+.-+|+|+++|||||+|||.+...+-+.|++.. -+.|+++|||+++++.. ||||+++.+|+|+-.|+++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999998888764 37899999999999987 8999999999999999999
Q ss_pred HHhhcCChHHHHHHHH
Q 000845 1230 KLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1230 eLl~~~~~~f~~l~~~ 1245 (1255)
||.+.++-..+++++.
T Consensus 232 el~~sd~P~v~qf~~G 247 (263)
T COG1127 232 ELLASDDPWVRQFFNG 247 (263)
T ss_pred HHHhCCCHHHHHHhcC
Confidence 9999888777776653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=403.86 Aligned_cols=228 Identities=25% Similarity=0.417 Sum_probs=191.8
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hh
Q 000845 1004 VEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR 1078 (1255)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEccCCccCC-CchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1079 SNLGIIPQDPTLFS-GSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~-gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|+||||++.+|. .|+++|+... ...+.+++.+ ...++++.+++.+..+..| ..||||||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQR 148 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--KVTELLALVGLGDKHDSYP-----------SNLSGGQKQR 148 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCchhhhCCh-----------hhCCHHHHHH
Confidence 89999999999996 6999999632 1223333221 0112777787766544333 5799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++|||||+.+|+|||||||||+||+++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|+++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999999976 999999999999999999999
Q ss_pred hhcCChHH-HHHHH
Q 000845 1232 LRRQDSLF-AQLVK 1244 (1255)
Q Consensus 1232 l~~~~~~f-~~l~~ 1244 (1255)
+.++...+ +.++.
T Consensus 229 ~~~p~~~~~~~~~~ 242 (343)
T TIGR02314 229 FSHPKTPLAQKFIR 242 (343)
T ss_pred HcCCCcHHHHHHHh
Confidence 87664433 44443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=386.39 Aligned_cols=233 Identities=33% Similarity=0.619 Sum_probs=212.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999633 459999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
+||+|.+|++|+++|+.... ..+++++.+ +++.+++.+.+..+|.|+++.+.....+||||||||++|||||+
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~------~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIE------AAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHH------HHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999997543 345556655 78888999999999999999999889999999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
++|++|||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|+.+
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~ 232 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEM 232 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHH
Confidence 999999999999999999999999999887668899999999999988999999999999999999999875 5677666
Q ss_pred HH
Q 000845 1243 VK 1244 (1255)
Q Consensus 1243 ~~ 1244 (1255)
+.
T Consensus 233 ~~ 234 (236)
T cd03253 233 WK 234 (236)
T ss_pred Hh
Confidence 54
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=378.49 Aligned_cols=214 Identities=28% Similarity=0.447 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++|++|+|+ ..++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.|+.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCc-cCCCchhhhcccC--------CCCC--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1083 IIPQDPT-LFSGSVRYNLDPL--------SQFT--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1083 ~vpQdp~-Lf~gTIr~Nl~~~--------~~~s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
||||++. -|.-|++|=+..+ ...+ |+++.+ +||+.+++.++..+. + ..|||||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~-----~aL~~~~~~~la~r~-------~----~~LSGGe 143 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE-----EALELLGLEHLADRP-------V----DELSGGE 143 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHH-----HHHHHhCcHHHhcCc-------c----cccChhH
Confidence 9999975 4556898877422 2223 333322 389999998886532 2 3699999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhh-hhcCEEEEEeCCEEEEEcCh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~~ 1228 (1255)
|||+.|||||.++|+||+||||||+||....-.+++.+++.. ++.|+|+|.|+++.. +.||++++|++|+|+..|+|
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCc
Confidence 999999999999999999999999999999999999999876 369999999999876 45999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
+|.+..
T Consensus 224 ~evlT~ 229 (258)
T COG1120 224 EEVLTE 229 (258)
T ss_pred chhcCH
Confidence 998864
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=384.75 Aligned_cols=226 Identities=35% Similarity=0.626 Sum_probs=207.5
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|.|+++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1082 ~~vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+|+||+|.+|++|+++|+..... ..++++.+ +++.+++.++++.+|.|+++.++....+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIE------AAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHH------HHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999986432 34455555 788899999999999999999998889999999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999999999987678999999999999988999999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=387.43 Aligned_cols=192 Identities=23% Similarity=0.331 Sum_probs=161.3
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcc
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
...+++.+|+|.|.|+.++.++++++.+..-+++++||++|+||||+++++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 347999999999998877899999999999999999999999999999999999999999888765 789
Q ss_pred cEEEccCCccCCCchhhhc---c----cCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1081 LGIIPQDPTLFSGSVRYNL---D----PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1081 i~~vpQdp~Lf~gTIr~Nl---~----~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
|+|-.|.-+=| ..-|. | .+.-.+++|+.. .|...|+...+...+ + ..||||||-
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~------hl~~~Gl~g~la~~s------i----~~LSGGQKs 489 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRR------HLGSFGLSGELALQS------I----ASLSGGQKS 489 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHH------HHHhcCCCchhhhcc------c----cccCCcchh
Confidence 99999976533 22222 1 111237888876 777776655443322 1 469999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
|+++|-+...+|.+|||||||++||.++-..+-++|+.. . .-||+|||+.+.|.. |+.++|.++|+|.-
T Consensus 490 rvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 490 RVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF-N-GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc-C-CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999999999863 3 369999999999987 99999999999986
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=377.86 Aligned_cols=207 Identities=55% Similarity=0.947 Sum_probs=186.5
Q ss_pred CCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh
Q 000845 998 WPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL 1077 (1255)
Q Consensus 998 ~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l 1077 (1255)
||..+.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88889999999999996533469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1078 RSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+.|+|+||+|.+|++|+++|+..+...+++++.+ +++ +......|||||+||++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~------~l~------------------~~~~~~~LS~G~~qrv~l 136 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG------ALR------------------VSEGGLNLSQGQRQLLCL 136 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHH------Hhh------------------ccCCCCcCCHHHHHHHHH
Confidence 99999999999999999999997654444444433 332 234567899999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcCh
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1228 (1255)
|||++++|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999988778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=384.16 Aligned_cols=233 Identities=33% Similarity=0.627 Sum_probs=208.9
Q ss_pred EEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1004 VEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1083 IIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1083 ~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
|+||+|.+|+.|+++|+.... ....+++.+ .++..++.+++..+|.|+++.......+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEE------AAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHH------HHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999999999999997542 234455554 6778889999999999999999888899999999999999999
Q ss_pred ccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1162 L~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~ 1241 (1255)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+..+.
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 233 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAK 233 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHH
Confidence 9999999999999999999999999999987678999999999999988999999999999999999998875 445554
Q ss_pred HH
Q 000845 1242 LV 1243 (1255)
Q Consensus 1242 l~ 1243 (1255)
++
T Consensus 234 ~~ 235 (238)
T cd03249 234 LV 235 (238)
T ss_pred Hh
Confidence 44
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=389.14 Aligned_cols=221 Identities=26% Similarity=0.440 Sum_probs=195.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+.+|.... +++|+||+|+.||.++|+|||||||||++++|.|+.+|++|+|.|||.|++++++++ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999996432 999999999999999999999999999999999999999999999999999999886 8999
Q ss_pred EEccCCccCCC-chhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
+|+|+..||+- ||++||.+.-+ .+.+|+.+ ...++++..++.+.++..|. .||||||||+|||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~--rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAla 145 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK--RVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALA 145 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHH--HHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHH
Confidence 99999999987 99999985322 23344332 11238888888888887764 6899999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
|||+++|++++||||.|+||+.....+...|++..+ +.|+|.|||+...++. +|||+||++|+|.+.|+|.|+..+|
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999999998888877543 6799999999999877 9999999999999999999999998
Q ss_pred ChHHH
Q 000845 1236 DSLFA 1240 (1255)
Q Consensus 1236 ~~~f~ 1240 (1255)
...|-
T Consensus 226 ~n~fV 230 (338)
T COG3839 226 ANLFV 230 (338)
T ss_pred cchhh
Confidence 87664
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=346.64 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=187.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR~~ 1080 (1255)
|+|+||+.+|+.+ +++|+||||+|++||.+-++||||||||||+++|++...|++|+|.++|.|++++..++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999866 77999999999999999999999999999999999999999999999999999888765 8999
Q ss_pred cEEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
||+|+||--|+.. |+.||+.+-- ....+++.+ ...++|+.+||.+-...+|. .|||||+||+|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~--rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR--RVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHH--HHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 9999999988765 9999997421 233444432 12348999999999988885 68999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhc-CEEEEEeCCEEEEEcCh
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDC-NMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl~~G~ive~G~~ 1228 (1255)
||||+..+|++||-||||-+||+++...|++.+.+.- .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999998753 589999999999999885 78999999999987654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=376.22 Aligned_cols=219 Identities=29% Similarity=0.491 Sum_probs=195.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC-CCChHHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT-TIGLYDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~-~i~~~~lR~~i 1081 (1255)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999876 67999999999999999999999999999999999999999999999999998 48889999999
Q ss_pred EEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
|+|.|+| .+|..||.+.+.+.. ..+.+|+.+ ...++++.+++.++....| .+||||||||+|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~--rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRva 148 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE--RVAEALELVGLEELLDRPP-----------FNLSGGQKQRVA 148 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHH--HHHHHHHHcCchhhccCCc-----------cccCCcceeeHH
Confidence 9999999 799999999998643 245555443 2234888998887744433 579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
||.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999999999998764 4799999999999988 99999999999999999999987
Q ss_pred cC
Q 000845 1234 RQ 1235 (1255)
Q Consensus 1234 ~~ 1235 (1255)
+.
T Consensus 229 ~~ 230 (235)
T COG1122 229 DA 230 (235)
T ss_pred hh
Confidence 63
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=377.49 Aligned_cols=219 Identities=32% Similarity=0.551 Sum_probs=198.9
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|+++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888877788999
Q ss_pred EEEccCCccCCCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1082 ~~vpQdp~Lf~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+|+||+|.+|..|+++|+..... .+.+++.+ +++..++.+.+...|.|+++.+.+...+||||||||++||||
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILR------AAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHH------HHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999975432 33445554 788899999999999999999988889999999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
++.+|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 155 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999876668999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=351.40 Aligned_cols=470 Identities=20% Similarity=0.246 Sum_probs=333.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhHHHHhchhhHhhhHhHHHHHH
Q 000845 724 KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803 (1255)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G~il~r~s~D~~~id~~l~~~~~~ 803 (1255)
.++..|.++.....+...+.......++.+...++|.++.++++.+|+.-+++...++++.++++|+..|. .-...++.
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHH
Confidence 34444555555555666677778889999999999999999999999999999999999999999999998 44455777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCcHHH
Q 000845 804 AVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEER 883 (1255)
Q Consensus 804 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~ 883 (1255)
+.+..+..+++.+-+++.+|.+.++.+..+++.++.+.+.+...-+-.+...+....+.++++..+.|.+..+...-..+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 88899999999999999999988776666655554444444333344444555667789999999999999988764433
Q ss_pred HHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcccHHHHHHHHHHHH---HHHH
Q 000845 884 FFA--KNL----DLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTT-LLHKGHKGAGYTGMALSFGL---SLND 953 (1255)
Q Consensus 884 ~~~--~~~----~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~---~~~~ 953 (1255)
... .+. ...+..............|....+- ..+.+..+ ....+..+.. .+.++++ -+-.
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~-------~lIGlvf~lal~~~w~st~---~a~tivlvlLflr~ 277 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLL-------GLIGLVFWLALSLGWASTN---VAATIVLVLLFLRT 277 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhccchhh---HHHHHHHHHHHHhh
Confidence 222 111 1111111111111122333322221 11111111 1111111212 2222332 2344
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCCCCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcE
Q 000845 954 FLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHK 1033 (1255)
Q Consensus 954 ~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~ 1033 (1255)
++...+.....+-...++.+++.++...|... ......+.++|. .||++||.|.|.+.. -=+..||++|+.||.
T Consensus 278 pL~s~vgilP~l~~AqvA~~kiakle~~~~~a--~~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGel 351 (546)
T COG4615 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKA--DFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGEL 351 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc--cCCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcE
Confidence 55556666666677788999999886533221 112223334453 699999999997654 347889999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhc
Q 000845 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV 1113 (1255)
Q Consensus 1034 vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~ 1113 (1255)
|-|+|.|||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++- +.+..+.+.+..
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~- 426 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEK- 426 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999986552 222345554433
Q ss_pred cCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc
Q 000845 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF 1193 (1255)
Q Consensus 1114 ~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~ 1193 (1255)
-|++..+..... +.+|==+ ...||-|||.|+|+--|++.+.+|+++||=.+.-||.=.+...+.+-...
T Consensus 427 -----~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 427 -----WLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred -----HHHHHHHhhhhc-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 444444433322 1122111 13699999999999999999999999999999999999998877664433
Q ss_pred --CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1194 --ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1194 --~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
.|+|++.|||+-.--..+||++.|++|+++|.-
T Consensus 496 K~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 496 KEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 589999999999999999999999999999864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=395.10 Aligned_cols=221 Identities=22% Similarity=0.352 Sum_probs=184.8
Q ss_pred CceEEEEEEEEEeCCC---CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC-----
Q 000845 1001 TGKVEIYDLQIRYRPN---APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI----- 1072 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~---~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i----- 1072 (1255)
...|+++||+|+|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3469999999999642 23699999999999999999999999999999999999999999999999998653
Q ss_pred -----------ChHHhhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCc
Q 000845 1073 -----------GLYDLRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136 (1255)
Q Consensus 1073 -----------~~~~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gl 1136 (1255)
+...+|++|+||+|+| .+|++|+++|+.+.. ..++++..+ .+ .+.+..+ |+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---------~~--~~~l~~~--gL 165 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---------LA--KFYLNKM--GL 165 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---------HH--HHHHHHc--CC
Confidence 3567899999999998 699999999996432 123333221 11 1233322 44
Q ss_pred c-chhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhh-hcCE
Q 000845 1137 D-SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVM-DCNM 1213 (1255)
Q Consensus 1137 d-t~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~Dr 1213 (1255)
+ ......+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .|||
T Consensus 166 ~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 166 DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 3 34566678999999999999999999999999999999999999999999998753 5789999999999885 5999
Q ss_pred EEEEeCCEEEEEcChhHHhhc
Q 000845 1214 VLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1214 I~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|++|++|++++.|+|+++..+
T Consensus 246 i~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999988754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=369.76 Aligned_cols=209 Identities=25% Similarity=0.421 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++|+|... +||+||||+|++||.+||+||||||||||+++++|+++|++|+|.+.|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999754 49999999999999999999999999999999999999999999999998766432 57899
Q ss_pred EEccCC---ccCCCchhhhcccCC--------CCC--h-HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1083 IIPQDP---TLFSGSVRYNLDPLS--------QFT--D-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1083 ~vpQdp---~Lf~gTIr~Nl~~~~--------~~s--d-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
||||.. .-|+-||+|-+.... ..+ | +++.+ ||+++++.++..+ +++ .||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~------aL~~Vgm~~~~~r-------~i~----~LS 141 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE------ALERVGMEDLRDR-------QIG----ELS 141 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHH------HHHHcCchhhhCC-------ccc----ccC
Confidence 999965 358889999886431 111 2 45555 9999999987543 343 599
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||+||+.|||||+++|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. ||+|+.|. ++++..|
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999999999999998765 8999999999999976 99999985 5788999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+|++.+..
T Consensus 221 ~~~~~~~~ 228 (254)
T COG1121 221 PPEEVLTE 228 (254)
T ss_pred ChhhccCH
Confidence 99999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=354.55 Aligned_cols=224 Identities=23% Similarity=0.421 Sum_probs=192.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC---hHHhhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~---~~~lR~ 1079 (1255)
.|+++||+.+|+ +...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999997 5567999999999999999999999999999999999999999999999999999888 566788
Q ss_pred ccEEEccCCccCCC-chhhhccc------------CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDP------------LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~------------~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
+||+|+|++.|-+. |+.+|+.. ++-++.++-.. ..++|+++|+.+..-.. ..+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~---Al~aLervgi~~~A~qr-----------a~~ 147 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ---ALDALERVGILDKAYQR-----------AST 147 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHH---HHHHHHHcCcHHHHHHH-----------hcc
Confidence 99999999998865 89999742 23344433222 12389999998876543 247
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1223 (1255)
|||||+||++|||||.++|+|++-|||+|+|||++.+.|++.|++.- .|.|||+.-|.++..++ ||||+-|++|+|+
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999998764 57899999999999976 8999999999999
Q ss_pred EEcChhHHhhcCChHHHHHHH
Q 000845 1224 EYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1224 e~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
-.|++.||-+ ..+...+.
T Consensus 228 fDg~~~el~~---~~~~~iYg 245 (258)
T COG3638 228 FDGPASELTD---EALDEIYG 245 (258)
T ss_pred EeCChhhhhH---HHHHHHhc
Confidence 9999999643 34444443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=360.62 Aligned_cols=204 Identities=26% Similarity=0.427 Sum_probs=173.4
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---h-
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---L- 1077 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---l- 1077 (1255)
++++||+..|..+. ..+|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996443 36999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcccEEEccCCccCCC-chhhhccc---CCCCCh----HHHHhccCchhHHHhccHHHHHH-hhhcCccchhcCCCCCCC
Q 000845 1078 RSNLGIIPQDPTLFSG-SVRYNLDP---LSQFTD----QEIWEVTIPSQVLEKCQLREVIQ-EKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~g-TIr~Nl~~---~~~~sd----~ei~~~~~~~~al~~~~l~~~i~-~lp~gldt~v~e~G~~LS 1148 (1255)
|++||+|+|+..|++. |++||+.. +..... +... ..++.+|+.+... ..| .+||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~------~l~~~lgl~~~~~~~~p-----------~eLS 144 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAE------ELLEVLGLEDRLLKKKP-----------SELS 144 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHH------HHHHhcCChhhhccCCc-----------hhcC
Confidence 5679999999999876 99999972 222221 2222 2566667765544 333 5799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEEE
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 1224 (1255)
||||||+||||||+.+|+|++.||||.+||.+|.+.|.+.+++.- .++|+|+|||+......|||++.|.+|++.+
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999874 3789999999999999999999999999543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=377.14 Aligned_cols=225 Identities=30% Similarity=0.491 Sum_probs=191.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 45999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccCCCchhhhcccCCCC---ChHHHHhccCchhHHHhccHH-HHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSGSVRYNLDPLSQF---TDQEIWEVTIPSQVLEKCQLR-EVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~gTIr~Nl~~~~~~---sd~ei~~~~~~~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|+||+|.+|+.|+++|+...... .++++.+ .++..++. +. .......||||||||++||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY------YLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHH------HHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999999999999999743211 1223333 56666553 22 2234567999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999999999998864 37899999999999876 9999999999999999999998765
Q ss_pred ChHHHHHHHHH
Q 000845 1236 DSLFAQLVKEY 1246 (1255)
Q Consensus 1236 ~~~f~~l~~~~ 1246 (1255)
...|.+.+...
T Consensus 224 ~~~~~~~~~~~ 234 (241)
T PRK14250 224 QNEVTKLFIQG 234 (241)
T ss_pred CcHHHHHHHhc
Confidence 54565555433
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=379.81 Aligned_cols=216 Identities=29% Similarity=0.468 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh---HHhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL---YDLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~---~~lR~~ 1080 (1255)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 459999999999999999999999999999999999999999999999999987764 567889
Q ss_pred cEEEccCCccCCC-chhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
++|+||++.+|.+ |+++|+.... ..+.++..+ ...++++.+++.++... ...+||||||||+
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 145 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE--IVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRV 145 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH--HHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 9999999999986 9999996421 123222211 00125666665443322 2347999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999999988653 7899999999999876 9999999999999999999987
Q ss_pred hc
Q 000845 1233 RR 1234 (1255)
Q Consensus 1233 ~~ 1234 (1255)
..
T Consensus 226 ~~ 227 (235)
T cd03261 226 AS 227 (235)
T ss_pred CC
Confidence 64
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=377.84 Aligned_cols=211 Identities=27% Similarity=0.480 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCCCEEEEcCEeCCCCC--hHH
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV-----EPTGGKIIIDGLDITTIG--LYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~-----~~~~G~I~idG~di~~i~--~~~ 1076 (1255)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999953 35999999999999999999999999999999999999 999999999999998776 567
Q ss_pred hhcccEEEccCCccCCCchhhhcccCCC---C-C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLSQ---F-T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~-s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
+|++++|+||++.+|..|+++|+.+... . . ++++.+ +++.+++.+.....++ +.+||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~~---------~~~LS 143 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEE------ALRKAALWDEVKDRLH---------ALGLS 143 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHH------HHHHcCCChHHhccCC---------cccCC
Confidence 7899999999999998899999974211 1 1 122333 6677776554433211 36899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 144 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999999987656899999999999875 99999999999999999
Q ss_pred hhHH
Q 000845 1228 PKKL 1231 (1255)
Q Consensus 1228 ~~eL 1231 (1255)
++++
T Consensus 224 ~~~~ 227 (227)
T cd03260 224 TEQI 227 (227)
T ss_pred cccC
Confidence 8764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=385.89 Aligned_cols=222 Identities=23% Similarity=0.386 Sum_probs=197.1
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++||+.+|. ...+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999996 45799999999999999999999999999999999999999999999999999999987 5899
Q ss_pred EEEccCCccCCC-chhhhcccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
++|+|+..||+- ||++|+.+.-. ..++|+.+ ...++|+.++|.++-...|. .|||||+||+|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~--rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVA 146 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA--RVEEALELVGLEGFADRKPH-----------QLSGGQQQRVA 146 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHH--HHHHHHHHcCchhhhhhChh-----------hhChHHHHHHH
Confidence 999999999976 99999975322 34444322 12348999999998777764 69999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
|||||..+|++|+||||-|+||..-...++.-+++.. .|.|.|+|||+-+.... +|||.||++|+|...|+|+|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 9999999999999999999999999999999888754 37899999999998766 89999999999999999999999
Q ss_pred cCChHHH
Q 000845 1234 RQDSLFA 1240 (1255)
Q Consensus 1234 ~~~~~f~ 1240 (1255)
+|...|-
T Consensus 227 ~P~~~fV 233 (352)
T COG3842 227 RPATRFV 233 (352)
T ss_pred CcchHHH
Confidence 9887774
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=392.48 Aligned_cols=222 Identities=24% Similarity=0.364 Sum_probs=190.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 4699999999999999999999999999999999999999999999999999987765 47899
Q ss_pred EEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
||||++.+|+. |+++|+.+.. ..+.++..+ ...++++.+++.++....| .+||||||||++||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalA 146 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE--RVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMG 146 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999964 9999997432 123222211 0113788888877665554 47999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
|||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999987654 7899999999998865 9999999999999999999999887
Q ss_pred ChHHH
Q 000845 1236 DSLFA 1240 (1255)
Q Consensus 1236 ~~~f~ 1240 (1255)
...|.
T Consensus 227 ~~~~~ 231 (356)
T PRK11650 227 ASTFV 231 (356)
T ss_pred ccHHH
Confidence 65554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=377.02 Aligned_cols=219 Identities=22% Similarity=0.400 Sum_probs=189.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCCEEEEcCEeCCCCChHHhhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE---PTGGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~---~~~G~I~idG~di~~i~~~~lR~ 1079 (1255)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 69999999999999888888899
Q ss_pred ccEEEccCCccCCCchhhhcccCCC---C------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1080 NLGIIPQDPTLFSGSVRYNLDPLSQ---F------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~gTIr~Nl~~~~~---~------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
.++|+||+|.+|+.|+++|+.+... . .++++.+ +++.+++.+++.. .....+.+||||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-------~~~~~~~~LS~G 146 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD------CLQKVGLFEEVKD-------KLKQNALALSGG 146 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHH------HHHHcCCChhhhH-------HhcCCcccCCHH
Confidence 9999999999999999999964311 1 1112333 6777777554432 233455789999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
||||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999987778999999999998865 9999999999999999999
Q ss_pred HHhhcCC
Q 000845 1230 KLLRRQD 1236 (1255)
Q Consensus 1230 eLl~~~~ 1236 (1255)
++...+.
T Consensus 227 ~~~~~~~ 233 (246)
T PRK14269 227 EFFENPK 233 (246)
T ss_pred HHHhCCC
Confidence 9987543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=390.97 Aligned_cols=222 Identities=25% Similarity=0.380 Sum_probs=190.0
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++||+++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.+ +++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 36999999999953 4699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+||+|++.+|+. |+++|+.+.- ..+.+++.+ ...++++.+++.++..+. ...||||||||+||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~--~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaL 147 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ--RVKEALELVDLAGFEDRY-----------VDQISGGQQQRVAL 147 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH--HHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 999999999976 9999997431 123333221 011277777776554433 35799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||+||++|+|++.|+|+++.++
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988754 7899999999999866 999999999999999999999988
Q ss_pred CChHHH
Q 000845 1235 QDSLFA 1240 (1255)
Q Consensus 1235 ~~~~f~ 1240 (1255)
+...|.
T Consensus 228 p~~~~~ 233 (351)
T PRK11432 228 PASRFM 233 (351)
T ss_pred CCchHH
Confidence 776554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=392.36 Aligned_cols=224 Identities=25% Similarity=0.404 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hh
Q 000845 1004 VEIYDLQIRYRP--NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~--~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR 1078 (1255)
|+++||+++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1079 SNLGIIPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|+||||++.+|. .|+++|+.... ..+.++..+ ...++++.+++.+... ....+||||||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qR 148 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA--RVTELLELVGLSDKAD-----------RYPAQLSGGQKQR 148 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 89999999999986 69999997421 222222211 0011555555544433 2335799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998653 7899999999999876 999999999999999999999
Q ss_pred hhcCChHHH
Q 000845 1232 LRRQDSLFA 1240 (1255)
Q Consensus 1232 l~~~~~~f~ 1240 (1255)
..++...+.
T Consensus 229 ~~~~~~~~~ 237 (343)
T PRK11153 229 FSHPKHPLT 237 (343)
T ss_pred HhCCCcHHH
Confidence 876544343
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=330.31 Aligned_cols=210 Identities=22% Similarity=0.394 Sum_probs=184.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|.+++|.|+|.. .+. ..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999953 332 46899999999999999999999999999999999999999999999887765 577999
Q ss_pred EccCCccCCC-chhhhcccCC----CCC--h-HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS----QFT--D-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~----~~s--d-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
++||..||.- ||++|+..+- ..+ + +.+. .++.++|+.++.+.+|. .||||||||+
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~------~aa~~vGl~~~~~RLP~-----------~LSGGqRQRv 138 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVE------AAAAQVGLAGFLKRLPG-----------ELSGGQRQRV 138 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHH------HHHHHhChhhHhhhCcc-----------ccCchHHHHH
Confidence 9999999976 9999997432 222 2 2333 38999999999999985 5899999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
||||+|+|+.+||+||||.|+|||.-...+...+.+.. ++.|+++|||.++.+.. +||++++++|||...|+-++++
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999888887755 46799999999999876 9999999999999999999999
Q ss_pred hcCC
Q 000845 1233 RRQD 1236 (1255)
Q Consensus 1233 ~~~~ 1236 (1255)
+...
T Consensus 219 ~~~~ 222 (231)
T COG3840 219 SGKA 222 (231)
T ss_pred ccCC
Confidence 8643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=372.89 Aligned_cols=469 Identities=20% Similarity=0.222 Sum_probs=335.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc------hhHHHHhchhhHhhhHh
Q 000845 724 KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVG------RILSRVSSDLSIIDLDL 797 (1255)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~~G------~il~r~s~D~~~id~~l 797 (1255)
..+.+|..++.+...+...+.|+......+.-..|-..++++-+... .||.....| +.=+|+.+|+...-...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 34566777777777777888888888888888888888888888777 444443332 44579999997766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000845 798 SIKSTIAVGTTMAVISTFVVLGA---------------LTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLA 862 (1255)
Q Consensus 798 ~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~ 862 (1255)
......++.++++++.-.+++.. +..++..+++..++..-++...+.+....+.-......+.+.
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 55555666666555554444431 111222222222222223333344433333333344445555
Q ss_pred HHHHHHHhchHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCcccHH
Q 000845 863 SHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWLI---QRLETLSAIVLATSALCTTLLHKGHKGAG 939 (1255)
Q Consensus 863 ~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1255)
..+.-.-++...|-.|+.|+...++..+..+...+.+......+.++. .....++.++... +.+-....|.++.|
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l--i~ap~~f~g~i~~G 323 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL--IAAPRYFSGQITFG 323 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH--hccHhhhcCcChHH
Confidence 666667778889999999988777777766666555544444433333 2222222211111 11112346888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC------CCCCcccccCCCCCCCCCCCceEEEEEEEEEe
Q 000845 940 YTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI------PSEAPELVQKNSPAPDWPPTGKVEIYDLQIRY 1013 (1255)
Q Consensus 940 ~~g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~------~~e~~~~~~~~~~~~~~p~~g~I~~~nvs~~Y 1013 (1255)
.+..+..-..++...+.|++..+..+.....++.|+.++.+. +++.+.... ......-.....|.|+|++..-
T Consensus 324 ~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~~ 402 (604)
T COG4178 324 GLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLRT 402 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEEC
Confidence 888888888999999999999999999999999999998632 211111100 0000000014689999999998
Q ss_pred CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC
Q 000845 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG 1093 (1255)
Q Consensus 1014 ~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g 1093 (1255)
+++. ..++++||+|+|||.+-|.|+||||||||+++|.|+.+.-+|+|.+-. -+++-++||.|++-.|
T Consensus 403 p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~G 470 (604)
T COG4178 403 PDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQG 470 (604)
T ss_pred CCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCc
Confidence 6554 689999999999999999999999999999999999999999987541 2458999999999999
Q ss_pred chhhhcc-cCC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEE
Q 000845 1094 SVRYNLD-PLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170 (1255)
Q Consensus 1094 TIr~Nl~-~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiL 1170 (1255)
|+||-|. |.. .++|+|+.+ +|.+|+|.+++.++.+ .+. -..-||+||||||++||.+|++|++++|
T Consensus 471 tLre~l~YP~~~~~~~d~~l~~------vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~L 539 (604)
T COG4178 471 TLREALCYPNAAPDFSDAELVA------VLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFL 539 (604)
T ss_pred cHHHHHhCCCCCCCCChHHHHH------HHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence 9999997 333 389999998 9999999999998743 332 3356999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeC
Q 000845 1171 DEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD 1219 (1255)
Q Consensus 1171 DE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1219 (1255)
|||||+||+++|..+.+.+++..+++|+|.|+||.....-.++.+-+++
T Consensus 540 DEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 540 DEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred ecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999999999999999999999999999887777777665543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=382.54 Aligned_cols=215 Identities=27% Similarity=0.455 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1003 KVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
.++++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCc--cCCCchhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1082 GIIPQDPT--LFSGSVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1082 ~~vpQdp~--Lf~gTIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
+|+||+|. ++..|+++||.+.. ..+. +.+.+ +++.+++.++.+..| .+||||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~------~l~~~gL~~~~~~~~-----------~~LSgGq~ 146 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNE------ALELVGMQDFKEREP-----------ARLSGGQK 146 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHH------HHHHCCCHhHhhCCc-----------ccCCHHHH
Confidence 99999983 56779999997431 1232 22333 777888766654433 57999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 1230 (1255)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|++++
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999988753 789999999999997799999999999999999999
Q ss_pred Hhhc
Q 000845 1231 LLRR 1234 (1255)
Q Consensus 1231 Ll~~ 1234 (1255)
+.+.
T Consensus 227 ~~~~ 230 (279)
T PRK13650 227 LFSR 230 (279)
T ss_pred HHcC
Confidence 8765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=370.71 Aligned_cols=216 Identities=29% Similarity=0.490 Sum_probs=194.7
Q ss_pred CceEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhc
Q 000845 1001 TGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~ 1079 (1255)
.|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+....|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5789999999999643 246999999999999999999999999999999999999999999999999998888778889
Q ss_pred ccEEEccCCccCCCchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1080 NLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
.++|+||+|.+|++|+++|++... ....+++++ ..+..++.+++..+|.|+++.+.....+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE------AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHH------HHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 999999999999999999998532 233344444 4566778899999988999989998999999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEE
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1222 (1255)
||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999987777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=369.04 Aligned_cols=210 Identities=26% Similarity=0.386 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+++|+.+..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999643256999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EccCCccC-CCchhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLF-SGSVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf-~gTIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+| ..|+++|+.... .... +++.+ +++..++.+... + ...+||+|||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~----~~~~LS~G~~qrv 142 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL------LLRVLGLTDKAN-------K----RARTLSGGMKRKL 142 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCCHHHHh-------C----hhhhCCHHHHHHH
Confidence 99999998 579999996421 1222 22233 566666654332 2 2357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
+||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999988777999999999999976 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=389.41 Aligned_cols=209 Identities=25% Similarity=0.406 Sum_probs=179.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh----hcccEEEccCCccCCC
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL----RSNLGIIPQDPTLFSG 1093 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l----R~~i~~vpQdp~Lf~g 1093 (1255)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++|+||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998887 7899999999999985
Q ss_pred -chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEE
Q 000845 1094 -SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILV 1169 (1255)
Q Consensus 1094 -TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILi 1169 (1255)
|+++|+.+.. ..+.++..+ ...++++.++|.++....| .+||||||||++|||||+++|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~--~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE--KALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999996421 122222211 0112677777765554443 4799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1170 LDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1170 LDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
||||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 999999999999999999998764 37899999999998755 99999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=381.14 Aligned_cols=220 Identities=30% Similarity=0.473 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC--hHHhh
Q 000845 1004 VEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG--LYDLR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~--~~~lR 1078 (1255)
|+++||+++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996432 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1079 SNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1079 ~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
++|+||||+| .+|+.|+++|+.+.. ..+.++..+ ...++++.+++.. .+........|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN--RVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHH--HHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 9999999998 578899999997421 233333221 0012566666530 02233344689999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 7899999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000845 1231 LLRR 1234 (1255)
Q Consensus 1231 Ll~~ 1234 (1255)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=379.05 Aligned_cols=212 Identities=23% Similarity=0.410 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999632 45999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--ccCCCchhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1083 IIPQDP--TLFSGSVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1083 ~vpQdp--~Lf~gTIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
|+||+| .+|..|+++|+.+.. ..+. +++.+ +++.+++.+...+.| ..|||||||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~L~~~~~~~~-----------~~LSgG~~q 145 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEE------ALKAVRMWDFRDKPP-----------YHLSYGQKK 145 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHH------HHHHCCCHHHhcCCh-----------hhCCHHHHH
Confidence 999998 678899999997421 1222 22333 777888766654443 369999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 146 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999998764 47899999999999865 999999999999999998765
Q ss_pred h
Q 000845 1232 L 1232 (1255)
Q Consensus 1232 l 1232 (1255)
.
T Consensus 226 ~ 226 (274)
T PRK13647 226 T 226 (274)
T ss_pred c
Confidence 3
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=388.90 Aligned_cols=221 Identities=24% Similarity=0.355 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
||||++.+|+ .|+++|+.+.- ..+.++..+ ...++++..++.++.+ ....+||||||||++||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~--~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 9999999996 59999997421 122222211 0012566665554433 34457999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
|||+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988654 7899999999999866 9999999999999999999999987
Q ss_pred ChHHH
Q 000845 1236 DSLFA 1240 (1255)
Q Consensus 1236 ~~~f~ 1240 (1255)
...|.
T Consensus 227 ~~~~~ 231 (353)
T TIGR03265 227 ATPFV 231 (353)
T ss_pred CCHHH
Confidence 76663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=352.38 Aligned_cols=223 Identities=27% Similarity=0.401 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999965 5699999999999999999999999999999999999999999999999988442 46799
Q ss_pred EEccCCccCC-CchhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFS-GSVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~-gTIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
||+|++.||+ -|+++|+.+.-+ .+.+|-.+ ...+.|+.+||.++-+..|. +||||||||++||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~--~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiA 142 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARE--RAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIA 142 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHH--HHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHH
Confidence 9999999998 599999974322 12221111 11248999999999887774 6999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeC--CEE---EEEcChhH
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSD--GKL---VEYDEPKK 1230 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~--G~i---ve~G~~~e 1230 (1255)
|||+.+|+||+||||.++||+.|...+|+-+.+..+ ++||++|||+++.... +|||+||.+ |+| ++.+-|..
T Consensus 143 RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 143 RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCC
Confidence 999999999999999999999999999999887653 5899999999998766 999999999 545 33332211
Q ss_pred HhhcCChHHHHHHHHH
Q 000845 1231 LLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1231 Ll~~~~~~f~~l~~~~ 1246 (1255)
- ...+..|..+.++-
T Consensus 223 R-~~~~~~f~~l~~~i 237 (248)
T COG1116 223 R-IRGDPEFLELREEL 237 (248)
T ss_pred c-cccChHHHHHHHHH
Confidence 1 22345676666554
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.71 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=180.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999953 469999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EccCCccCC-CchhhhcccCCC---C----ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLSQ---F----TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~~---~----sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|. .|+++|+.+... . ..++..+ ...++++..++.+... ....+||||||||+
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl 145 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA--KVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRV 145 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH--HHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 999999986 599999974311 1 1111111 0012556666544433 23357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999998865 9999999999999999999997
Q ss_pred hcCC
Q 000845 1233 RRQD 1236 (1255)
Q Consensus 1233 ~~~~ 1236 (1255)
+.+.
T Consensus 226 ~~~~ 229 (239)
T cd03296 226 DHPA 229 (239)
T ss_pred cCCC
Confidence 6543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=370.46 Aligned_cols=219 Identities=24% Similarity=0.355 Sum_probs=193.0
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcc
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
.+.|+++|+++. + .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999985 2 4599999999999999999999999999999999999999999999998 3
Q ss_pred cEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1081 i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
|+|+||++.+|++|+++|+.+.....+.++.+ +++.+++.+.+..+|.++++.+++.+.+||||||||++||||
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~------~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKS------VVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARA 173 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHH------HHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999997543333444444 677888889999999999999999899999999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHH-HHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNT-IRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~-l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
++++|+||||||||++||+++.+.+.+. +++...++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~ 252 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDF 252 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHH
Confidence 9999999999999999999999988765 4555567899999999999988999999999999999999999864 3455
Q ss_pred HHHH
Q 000845 1240 AQLV 1243 (1255)
Q Consensus 1240 ~~l~ 1243 (1255)
.+.+
T Consensus 253 ~~~~ 256 (282)
T cd03291 253 SSKL 256 (282)
T ss_pred HHHH
Confidence 5444
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=373.41 Aligned_cols=220 Identities=24% Similarity=0.390 Sum_probs=187.8
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CC
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IG 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~ 1073 (1255)
.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999963 469999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHhhcccEEEccCCccCCCchhhhcccCC----CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLS----QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~----~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
...+|++++|+||+|.+|+.|+++|+.... ..+. +++.+ +++.+++.+.+. ........
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~~~~~~~ 155 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEW------ALTKAALWNEVK-------DKLHQSGY 155 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHH------HHHHcCCChhhH-------HHHhcCCC
Confidence 667899999999999999999999997421 1222 22333 666666543322 22344557
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
+||||||||++||||++++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 156 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999988677899999999999865 99999999999999
Q ss_pred EcChhHHhhcC
Q 000845 1225 YDEPKKLLRRQ 1235 (1255)
Q Consensus 1225 ~G~~~eLl~~~ 1235 (1255)
.|+++++...+
T Consensus 236 ~g~~~~~~~~~ 246 (260)
T PRK10744 236 FGNTDTIFTKP 246 (260)
T ss_pred eCCHHHHHhCC
Confidence 99999998754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=377.95 Aligned_cols=219 Identities=23% Similarity=0.437 Sum_probs=189.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999644456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+| .++..|+++||.... ..+.++..+ ...++++.+++.+++...| ..||||||||++|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE--RVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH--HHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 999998 466789999997431 123322211 0123777777776665544 4799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999998754 7899999999999988999999999999999999988764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=372.40 Aligned_cols=225 Identities=24% Similarity=0.390 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CCEEEEcCEeCCCC--ChHH
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDITTI--GLYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~-----~G~I~idG~di~~i--~~~~ 1076 (1255)
++++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 4556
Q ss_pred hhcccEEEccCCccCCCchhhhcccC---CC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1077 LRSNLGIIPQDPTLFSGSVRYNLDPL---SQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~gTIr~Nl~~~---~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
.|++++|+||++.+|+.|+++|+... .. .+.++..+ ...++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE--IVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH--HHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 78899999999999999999999632 11 12221111 0012666666653331 122334468999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCChHH
Q 000845 1232 LRRQDSLF 1239 (1255)
Q Consensus 1232 l~~~~~~f 1239 (1255)
..++...+
T Consensus 231 ~~~~~~~~ 238 (247)
T TIGR00972 231 FTNPKEKR 238 (247)
T ss_pred HhCCCChH
Confidence 87654443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=373.94 Aligned_cols=222 Identities=21% Similarity=0.324 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~~~ 1075 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999963 4599999999999999999999999999999999999997 48999999999863 3445
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC----CCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ----FTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~----~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.+|++++|+||+|.+|..|+++|+.+... ... +.+.+ +++.+++.+.+ ++.+++ ...+|
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l---~~~~~~----~~~~L 151 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ------SLKKSALWNEV---KDKLNT----NALSL 151 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHH------HHHHhCCchhh---HHHHhC----CcccC
Confidence 67899999999999999999999974211 111 22222 66776664333 223444 34689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988777899999999999866 9999999999999999
Q ss_pred ChhHHhhcCChHH
Q 000845 1227 EPKKLLRRQDSLF 1239 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f 1239 (1255)
+++++.+++.-.|
T Consensus 232 ~~~~~~~~~~~~~ 244 (254)
T PRK14273 232 STDELFFNPKNTK 244 (254)
T ss_pred CHHHHHhCCCChH
Confidence 9999987655444
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=367.33 Aligned_cols=202 Identities=24% Similarity=0.359 Sum_probs=173.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH---Hhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY---DLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~---~lR~~ 1080 (1255)
|+++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEccCCccCC-CchhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++|+||+|.+|. .|+++|+.... ... ++++.+ +++.+++.+.....| .+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LSgG~~ 144 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSA------ALEKVGLEGKAHALP-----------MQLSGGEQ 144 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCChhhhhCCh-----------hhCCHHHH
Confidence 999999999987 59999997421 111 233443 777777766554433 47999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999998764 47899999999999976 899999999985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=385.88 Aligned_cols=220 Identities=27% Similarity=0.383 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999953 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCccCCC-chhhhcccCC-------CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS-------QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~-------~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
||||++.+|+. |+++|+.+.. ..+.++..+ ...++++.+++.++.+..| ..||||||||
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QR 144 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA--KVTQLLEMVQLAHLADRYP-----------AQLSGGQKQR 144 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH--HHHHHHHHcCCchhhhCCh-----------hhCCHHHHHH
Confidence 99999999975 9999997431 122222211 0112677777765544333 4799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++|||||+++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988754 6899999999999876 999999999999999999999
Q ss_pred hhcCChHH
Q 000845 1232 LRRQDSLF 1239 (1255)
Q Consensus 1232 l~~~~~~f 1239 (1255)
+.++...|
T Consensus 225 ~~~p~~~~ 232 (353)
T PRK10851 225 WREPATRF 232 (353)
T ss_pred HhCccchH
Confidence 98776544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=372.96 Aligned_cols=211 Identities=28% Similarity=0.464 Sum_probs=179.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC---hHHhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~---~~~lR~~ 1080 (1255)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred cEEEccCCccCC-CchhhhcccCCC------------CCh---HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPLSQ------------FTD---QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~~~------------~sd---~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
++|+||++.+|. .|+++|+..... .++ +++.+ +++..++.+ ......
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~-----------~~~~~~ 142 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA------ALERVGLLD-----------KAYQRA 142 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHH------HHHHcCChh-----------hhCCCc
Confidence 999999999887 699999963210 111 12222 455554433 333445
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
.+||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999864 37899999999999985 99999999999
Q ss_pred EEEEcChhHHh
Q 000845 1222 LVEYDEPKKLL 1232 (1255)
Q Consensus 1222 ive~G~~~eLl 1232 (1255)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=372.95 Aligned_cols=219 Identities=23% Similarity=0.383 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~~ 1075 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999953 459999999999999999999999999999999999975 589999999999875 3455
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC---CC-C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.+|++++|+||++.+|..|+++|+.+.. .. . ++++.+ +++.+++.+.+.. .......+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-------~~~~~~~~L 150 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVER------SLRHAALWDEVKD-------RLHESALGL 150 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHH------HHHHcCCchhhhH-------HhhCCcccC
Confidence 6789999999999999999999996421 11 1 122333 6677776544322 233445689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 151 SgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999865 9999999999999999
Q ss_pred ChhHHhhcCC
Q 000845 1227 EPKKLLRRQD 1236 (1255)
Q Consensus 1227 ~~~eLl~~~~ 1236 (1255)
+++++.+.+.
T Consensus 231 ~~~~~~~~~~ 240 (253)
T PRK14242 231 PTEQIFTRPR 240 (253)
T ss_pred CHHHHHcCCC
Confidence 9999986543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=360.54 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcc
Q 000845 1004 VEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999996542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1081 i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
|+|+||+|.+|++|+++|+.+.....+++..+ +++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara 141 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEK------VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA 141 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHH------HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999998754555555655 788889999999999999999999999999999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCE
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQN-TIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGK 1221 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~-~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1221 (1255)
++++|+++||||||++||+++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999999888876 566553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=370.96 Aligned_cols=216 Identities=26% Similarity=0.427 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i~ 1082 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999953 459999999999999999999999999999999999999999999999999988876654 57899
Q ss_pred EEccCCccCCC-chhhhcccCCC-C------------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ-F------------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~-~------------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
|+||+|.+|.+ |+++|+..... . ..++.. ....+.++.+ |++.........||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~--~l~~~~~~~~~~LS 145 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----------ERAEELLERV--GLADLADRPAGELS 145 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----------HHHHHHHHHc--CccchhhCChhhCC
Confidence 99999999987 99999964211 0 011111 1122333332 44444445556899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
||||||++||||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999998765 57899999999999976 9999999999999999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+++++..+
T Consensus 226 ~~~~~~~~ 233 (236)
T cd03219 226 TPDEVRNN 233 (236)
T ss_pred CHHHhccC
Confidence 99998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=369.44 Aligned_cols=214 Identities=26% Similarity=0.444 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hh
Q 000845 1004 VEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR 1078 (1255)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999642 126999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cccEEEccCCccCC-CchhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1079 SNLGIIPQDPTLFS-GSVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~-gTIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
+.++|+||+|.+|. .|+++|+... ...+. +++.+ +++..++.+.... ...+||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-----------~~~~LS~G 144 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLE------LLELVGLEDKADA-----------YPAQLSGG 144 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHCCChhhhhc-----------ChhhCCHH
Confidence 89999999999997 5999999632 11221 22333 5666666544333 33579999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999988643 7899999999999876 99999999999999999
Q ss_pred hhHHhhc
Q 000845 1228 PKKLLRR 1234 (1255)
Q Consensus 1228 ~~eLl~~ 1234 (1255)
++++.++
T Consensus 225 ~~~~~~~ 231 (233)
T cd03258 225 VEEVFAN 231 (233)
T ss_pred HHHHhcC
Confidence 9988754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=378.74 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC----CChHH
Q 000845 1004 VEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT----IGLYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~----i~~~~ 1076 (1255)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHH-HHHHhhhcCccchhcCCCCCCChh
Q 000845 1077 LRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLR-EVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1077 lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
+|++++||+|+| .+|..|+.+|+.+.. ..+.+++.+ ...++++.+++. ++ ......+||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~L~~~~-----------~~~~~~~LSgG 148 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK--IAAEKLEMVGLADEF-----------WEKSPFELSGG 148 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHcCCChhh-----------ccCCcccCCHH
Confidence 899999999998 789999999997431 122332211 001255555552 22 22344689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|++
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998764 47899999999998865 999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
+++..+
T Consensus 229 ~~~~~~ 234 (288)
T PRK13643 229 SDVFQE 234 (288)
T ss_pred HHHHcC
Confidence 998753
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=387.02 Aligned_cols=223 Identities=26% Similarity=0.390 Sum_probs=189.6
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC--CEEEEcCEeCCCCChHHhh
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG--GKIIIDGLDITTIGLYDLR 1078 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~--G~I~idG~di~~i~~~~lR 1078 (1255)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+.. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 478999999999963 469999999999999999999999999999999999999999 9999999999876653 6
Q ss_pred cccEEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|+||+|++.+|.. |+++|+.+.- ..+.+++.+ ...++++.++|.++..+.| .+||||||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~--~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QR 145 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE--RVADALKLVGLGDAAAHLP-----------AQLSGGMQQR 145 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHhcCCCchhhCCh-----------hhCCHHHHHH
Confidence 789999999999976 9999997421 223333221 0112666666665544443 4799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC---CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA---NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
++|||||+++|++|+||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+|++
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999987654 6899999999999866 99999999999999999999
Q ss_pred HhhcCChHHH
Q 000845 1231 LLRRQDSLFA 1240 (1255)
Q Consensus 1231 Ll~~~~~~f~ 1240 (1255)
+.+++...|-
T Consensus 226 ~~~~p~~~~~ 235 (362)
T TIGR03258 226 LYDAPADGFA 235 (362)
T ss_pred HHhCcCcHHH
Confidence 9988766553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=370.97 Aligned_cols=221 Identities=27% Similarity=0.437 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999642 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||+|.+|. .|+++|+.... ..+.++..+ ...++++..++.+ +........+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE--RADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHH
Confidence 999999996 69999996421 111111111 0011444444432 01233445689999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 1236 (1255)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 99999999999999999999999999999998653 7899999999998765 99999999999999999999876543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.41 Aligned_cols=219 Identities=26% Similarity=0.432 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC----hH
Q 000845 1003 KVEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG----LY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~----~~ 1075 (1255)
.|+++||+++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 36999999999999999999999999999999999999999999999999997543 45
Q ss_pred HhhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccc-hhcCCCCCCCh
Q 000845 1076 DLRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS-LVVQDGANWSM 1149 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt-~v~e~G~~LSg 1149 (1255)
.+|++|+||||+| .+|..|+++|+.+.. ..+.++..+. ..++++.+ ||++ .......+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~--~~~~l~~~-----------gL~~~~~~~~~~~LSg 148 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY--AHRLLMDL-----------GFSRDVMSQSPFQMSG 148 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH--HHHHHHHc-----------CCChhhhhCCcccCCH
Confidence 7899999999998 588899999996421 1233332220 01133333 4542 23445678999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999864 47899999999999865 8999999999999999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+++++.++
T Consensus 229 ~~~~~~~~ 236 (286)
T PRK13646 229 SPKELFKD 236 (286)
T ss_pred CHHHHHhC
Confidence 99998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.50 Aligned_cols=222 Identities=23% Similarity=0.367 Sum_probs=188.3
Q ss_pred CCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--C
Q 000845 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--I 1072 (1255)
Q Consensus 1000 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i 1072 (1255)
..+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3468999999999963 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHhhcccEEEccCCccCCCchhhhcccCC---CC--Ch----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC
Q 000845 1073 GLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF--TD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1073 ~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~--sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~ 1143 (1255)
+...+|++++|+||+|.+|.+|+++|+.... .. +. +++.+ +++.+++.+.+.. .....
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-------~~~~~ 160 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVET------SLRKAGLWEEVKD-------RLHEP 160 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHH------HHHHcCCchhhhH-------HhhCC
Confidence 4567889999999999999999999997421 11 11 22333 6777776544321 22344
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++
T Consensus 161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 5689999999999999999999999999999999999999999999987667899999999999966 899999999999
Q ss_pred EEEcChhHHhhcCC
Q 000845 1223 VEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~ 1236 (1255)
++.|+++++..++.
T Consensus 241 ~~~g~~~~~~~~~~ 254 (267)
T PRK14235 241 VEVGDTEKMFTNPD 254 (267)
T ss_pred EEeCCHHHHHhCCC
Confidence 99999999986543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=365.89 Aligned_cols=216 Identities=24% Similarity=0.380 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i~ 1082 (1255)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999953 369999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EEccCCccCCC-chhhhcccCCCCC-hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQFT-DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~~s-d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
|+||++.+|.+ |+++|+.+..... ..+..+. ..++++.. . +++........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKAR--LERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHH--HHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 99999999987 9999997432211 1111110 00122222 1 12223334456799999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999999998765 47899999999999866 99999999999999999988754
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=371.76 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=187.1
Q ss_pred CCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--C
Q 000845 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--I 1072 (1255)
Q Consensus 1000 ~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i 1072 (1255)
....|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999963 459999999999999999999999999999999999987 689999999999863 5
Q ss_pred ChHHhhcccEEEccCCccCCCchhhhcccCCC---CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1073 GLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1073 ~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
+...+|++++|+||+|.+|..|+++|+.+... .. ++++.+ +++.+++...+ +........+
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l-------~~~~~~~~~~ 154 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVER------SLRKAAVWDEC-------KDKLNESGYS 154 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHH------HHHHhCCcchh-------hhhhCCCccc
Confidence 66778899999999999999999999975321 11 122333 56666654322 2223344568
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeC------
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSD------ 1219 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~------ 1219 (1255)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999988667899999999999866 999999996
Q ss_pred -----CEEEEEcChhHHhhcCC
Q 000845 1220 -----GKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1220 -----G~ive~G~~~eLl~~~~ 1236 (1255)
|+++|.|+++++...+.
T Consensus 235 ~~g~~g~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIFNSPK 256 (269)
T ss_pred cccccceEEEeCCHHHHHhCcC
Confidence 67999999999987644
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=371.17 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh---HHhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL---YDLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~---~~lR~~ 1080 (1255)
|+++||+++|+. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 3469999999999999999999999999999999999999999999999999987664 346889
Q ss_pred cEEEccCCccCC-CchhhhcccCCC------------CCh---HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPLSQ------------FTD---QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~~~------------~sd---~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
++|+||++.+|. .|+++|+..... ..+ +++.+ +++.+++.+. .....
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-----------~~~~~ 143 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS------ALERVGLADK-----------AYQRA 143 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHH------HHHHcCcHhh-----------hcCCc
Confidence 999999999887 599999963210 011 12222 4555555433 33345
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
.+||||||||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 6899999999999999999999999999999999999999999998864 37899999999999865 99999999999
Q ss_pred EEEEcChhHHh
Q 000845 1222 LVEYDEPKKLL 1232 (1255)
Q Consensus 1222 ive~G~~~eLl 1232 (1255)
+++.|+++++.
T Consensus 224 i~~~~~~~~~~ 234 (243)
T TIGR02315 224 IVFDGAPSELD 234 (243)
T ss_pred EEecCCHHHhC
Confidence 99999999873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=384.58 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..++++|++++|.. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.+ +++|
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999953 4599999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+||+|++.+|+. |+++|+.+.- ..+.+++.+ ...++++.+++.++....| .+||||||||++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaL 155 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP--RVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAI 155 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH--HHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHH
Confidence 999999999976 9999997421 123332211 0112677778777666555 4799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|++++++
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988754 7899999999999865 999999999999999999999988
Q ss_pred CChHH
Q 000845 1235 QDSLF 1239 (1255)
Q Consensus 1235 ~~~~f 1239 (1255)
+...|
T Consensus 236 p~~~~ 240 (375)
T PRK09452 236 PKNLF 240 (375)
T ss_pred cccHH
Confidence 76555
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=364.12 Aligned_cols=202 Identities=28% Similarity=0.421 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999953 469999999999999999999999999999999999999999999999999986543 4778999
Q ss_pred EccCCccCC-CchhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|. .|+++|+.... ..+. +++.+ +++..++.++.... ..+||||||||+
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~-----------~~~LSgG~~qrl 139 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRE------LLELVGLEGLLNRY-----------PHELSGGQQQRV 139 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHH------HHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 999999886 59999996421 1121 12222 56666665544332 357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
+|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999998864 37899999999999866 9999999999999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=376.42 Aligned_cols=218 Identities=27% Similarity=0.473 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC--CCChHHhhcc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT--TIGLYDLRSN 1080 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~--~i~~~~lR~~ 1080 (1255)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5899999999963 346999999999999999999999999999999999999999999999999984 3445678899
Q ss_pred cEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1081 LGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1081 i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
++|+||+| .+|+.|+++|+.... ..+.++..+ ...++++.+++.++. .....+||||||||+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl 150 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK--RVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRV 150 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHCCChhhh-----------hCCcccCCHHHHHHH
Confidence 99999998 578899999997421 223332221 011266777765443 233468999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|++++++
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988754 7899999999999975 9999999999999999999987
Q ss_pred hc
Q 000845 1233 RR 1234 (1255)
Q Consensus 1233 ~~ 1234 (1255)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 63
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=371.54 Aligned_cols=226 Identities=23% Similarity=0.361 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCC--CCChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDIT--TIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~--~i~~~ 1075 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999953 4599999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HhhcccEEEccCCccCCC-chhhhcccCC---CC--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1076 DLRSNLGIIPQDPTLFSG-SVRYNLDPLS---QF--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~---~~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
.+|++++|+||+|.+|.+ |+++|+.... .. ..++..+ ...++++..++.+.+. ........+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 152 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDE--RVEWALKKAALWDEVK-------DRLNDYPSNLSG 152 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHH--HHHHHHHHcCCccchh-------hhhccChhhCCH
Confidence 788999999999999976 9999996421 11 1121111 0012566666543322 122334568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987677999999999999876 999999999999999999
Q ss_pred hHHhhcCChHH
Q 000845 1229 KKLLRRQDSLF 1239 (1255)
Q Consensus 1229 ~eLl~~~~~~f 1239 (1255)
+++.+++...+
T Consensus 233 ~~~~~~~~~~~ 243 (253)
T PRK14267 233 RKVFENPEHEL 243 (253)
T ss_pred HHHHhCCCcHH
Confidence 99986643334
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=387.73 Aligned_cols=221 Identities=24% Similarity=0.353 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999953 4599999999999999999999999999999999999999999999999999876653 57899
Q ss_pred EEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
||||++.+|.. |+++|+.+.. ..+.++..+ ...++++.+++.++....| .+||||||||++||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLA 145 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ--RVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIG 145 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH--HHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHH
Confidence 99999999975 9999997431 122222111 0012677777655543333 47999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
|||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988643 7899999999998866 9999999999999999999999876
Q ss_pred ChHHH
Q 000845 1236 DSLFA 1240 (1255)
Q Consensus 1236 ~~~f~ 1240 (1255)
...|-
T Consensus 226 ~~~~~ 230 (369)
T PRK11000 226 ANRFV 230 (369)
T ss_pred ccHHH
Confidence 65443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=380.13 Aligned_cols=227 Identities=24% Similarity=0.374 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeCCC-----------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC
Q 000845 1003 KVEIYDLQIRYRPN-----------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT 1071 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~-----------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~ 1071 (1255)
-++++|++++|... ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999531 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---hhcccEEEccCC--ccC-CCchhhhccc----CC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchh
Q 000845 1072 IGLYD---LRSNLGIIPQDP--TLF-SGSVRYNLDP----LS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140 (1255)
Q Consensus 1072 i~~~~---lR~~i~~vpQdp--~Lf-~gTIr~Nl~~----~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v 1140 (1255)
++... +|++|+||+|+| .+| ..||.+|+.. +. ..+.++..+ ...++++.+++.+. ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~--~~~~~l~~vgl~~~----------~~ 155 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKD--RVKAMMLKVGLLPN----------LI 155 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHcCCChH----------Hh
Confidence 87554 678999999999 477 4799999852 11 234333322 01125666666221 12
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEE
Q 000845 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSM 1217 (1255)
Q Consensus 1141 ~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl 1217 (1255)
.....+||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 233457999999999999999999999999999999999999999999987653 7899999999999986 9999999
Q ss_pred eCCEEEEEcChhHHhhcCChHHHH
Q 000845 1218 SDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1218 ~~G~ive~G~~~eLl~~~~~~f~~ 1241 (1255)
++|+|+|.|+++++++++...|.+
T Consensus 236 ~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred ECCEEEEEcCHHHHHcCCCCHHHH
Confidence 999999999999999876666655
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=366.28 Aligned_cols=208 Identities=23% Similarity=0.344 Sum_probs=176.9
Q ss_pred eEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---h
Q 000845 1003 KVEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---L 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---l 1077 (1255)
-++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccCCccCCC-chhhhcccC---CCCChH----HHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1078 R-SNLGIIPQDPTLFSG-SVRYNLDPL---SQFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1078 R-~~i~~vpQdp~Lf~g-TIr~Nl~~~---~~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
| +.++|+||+|.+|.+ |+++|+... .....+ ++.+ +++..++.+. ......+||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~-----------~~~~~~~LS 147 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE------MLAAVGLEHR-----------ANHRPSELS 147 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCchh-----------hhCChhhCC
Confidence 3 679999999999976 999999641 122222 2222 5565555433 333346799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
||||||++||||++.+|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998864 478999999999999999999999999999887
Q ss_pred C
Q 000845 1227 E 1227 (1255)
Q Consensus 1227 ~ 1227 (1255)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 6
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=369.31 Aligned_cols=222 Identities=24% Similarity=0.394 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCCChHHh
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTIGLYDL 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i~~~~l 1077 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999963 4599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEccCCccC-CCchhhhcccCC---CC--C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1078 RSNLGIIPQDPTLF-SGSVRYNLDPLS---QF--T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf-~gTIr~Nl~~~~---~~--s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
|+.|+|+||+|.+| ..|+++|+.... .. . ++++.+ +++.+++.+.+. ..+|. ...+|
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~---~~~~~----~~~~L 147 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRW------ALEKAQLWDEVK---DRLDA----PAGKL 147 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHH------HHHHcCCCcchh---hhhcC----CcccC
Confidence 99999999999755 579999996421 11 1 122333 677776644322 12333 34579
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999987678999999999999865 9999999999999999
Q ss_pred ChhHHhhcCChHH
Q 000845 1227 EPKKLLRRQDSLF 1239 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f 1239 (1255)
+++++.+.+...+
T Consensus 228 ~~~~~~~~~~~~~ 240 (250)
T PRK14247 228 PTREVFTNPRHEL 240 (250)
T ss_pred CHHHHHcCCccHH
Confidence 9999987654334
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=372.64 Aligned_cols=219 Identities=23% Similarity=0.446 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+.+.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644456999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+| .++..|+++|+.... ..+.++..+ ...++++..++.++... ...+||||||||++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 153 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD--IIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAI 153 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHH
Confidence 999998 455779999997421 123333221 00125666666555433 335899999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998653 4899999999999888999999999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=386.62 Aligned_cols=213 Identities=25% Similarity=0.443 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcc-CCCchhhhcccCC-----CC---C---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1083 IIPQDPTL-FSGSVRYNLDPLS-----QF---T---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1083 ~vpQdp~L-f~gTIr~Nl~~~~-----~~---s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
|+||++.+ |+.|+++|+.... .. . .+.+.+ +++.+++.++..+ ...+||||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~------~le~vgl~~~~~~-----------~~~~LSgG 143 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVER------AMERTGVAQFADR-----------PVTSLSGG 143 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHH------HHHHcCCchhhcC-----------ChhhCCHH
Confidence 99999987 6779999996421 11 1 123343 7888888665433 23579999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+++|+++.+.. ||||++|++|++++.|+|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 47899999999999965 999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
++++..
T Consensus 224 ~ev~~~ 229 (402)
T PRK09536 224 ADVLTA 229 (402)
T ss_pred HHHhCc
Confidence 998864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.16 Aligned_cols=218 Identities=24% Similarity=0.381 Sum_probs=184.2
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh----hcc
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL----RSN 1080 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l----R~~ 1080 (1255)
.++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888853 469999999999999999999999999999999999999999999999999988776543 468
Q ss_pred cEEEccCCccCC-CchhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++|+||++.+|. .|+++|+... ..... +++.+ +++.+++.++....| .+||||||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~Gq~ 166 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAE------ALELVGLEGWEHKYP-----------DELSGGMQ 166 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCHhHhhCCc-----------ccCCHHHH
Confidence 999999999985 6999999642 11122 22333 677777766655443 47999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
||++||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 167 qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 167 QRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998864 37899999999999865 9999999999999999999
Q ss_pred HHhhcCChHHHH
Q 000845 1230 KLLRRQDSLFAQ 1241 (1255)
Q Consensus 1230 eLl~~~~~~f~~ 1241 (1255)
++++++...|.+
T Consensus 247 ~~~~~~~~~~~~ 258 (269)
T cd03294 247 EILTNPANDYVR 258 (269)
T ss_pred HHHhCcCcHHHH
Confidence 998765554443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.62 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC----CChH
Q 000845 1003 KVEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT----IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~----i~~~ 1075 (1255)
.++++||+++|+... .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 459999999999999999999999999999999999999999999999999863 3456
Q ss_pred HhhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1076 DLRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
..|++|+||||+| .+|+.|+++|+.+.. ..+.++..+ ...++++.++|.+.+ .......||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~----------~~~~~~~LSgG 149 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ--KAREMIELVGLPEEL----------LARSPFELSGG 149 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHCCCChhh----------hhCCcccCCHH
Confidence 7888999999998 688899999996421 123333321 011256666654221 12334679999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 7899999999999865 99999999999999999
Q ss_pred hhHHhhc
Q 000845 1228 PKKLLRR 1234 (1255)
Q Consensus 1228 ~~eLl~~ 1234 (1255)
++++.+.
T Consensus 230 ~~~~~~~ 236 (290)
T PRK13634 230 PREIFAD 236 (290)
T ss_pred HHHHhcC
Confidence 9998754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=363.58 Aligned_cols=215 Identities=25% Similarity=0.373 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999953 46999999999999999999999999999999999999999999999999998776543 468999
Q ss_pred EccCCcc-CCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTL-FSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~L-f~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||++.+ +..|+++|+.... ..+.++..+ ...+.++.. |++........+||||||||++|||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrl~lar 145 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE--RIAALLARL-----------GLAERADDKVRELNGGHRRRVEIAR 145 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHH
Confidence 9999987 4679999997432 122211111 000133333 3443344455689999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|++++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999999999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=378.25 Aligned_cols=217 Identities=24% Similarity=0.426 Sum_probs=183.5
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999953 46999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred EEEccCCccCC-CchhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+|+||+|.+|. .|++||+.++.. .+..+..+ ...++++.+++.+ ..++.+ .+||+|||||++|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~l 149 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA--LVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTL 149 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHH
Confidence 99999999986 599999974321 22222211 0012455555433 334444 4799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++|+|||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999999875 47899999999999976 999999999999999999999764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=372.97 Aligned_cols=219 Identities=22% Similarity=0.394 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeCCC-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1003 KVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
-|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 34599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||+| .++..|+.+|+.... ..+++++.+ ....+++.+++.++.... ...||||||||++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK--RVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVA 150 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHH--HHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHH
Confidence 9999998 467889999997421 233333322 012367777776654432 3579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999987754 7899999999999988999999999999999999998864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=349.13 Aligned_cols=178 Identities=30% Similarity=0.539 Sum_probs=165.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999965434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHcc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~ 1163 (1255)
+||+|.+|+.|+++|+ ..+||+|||||++||||+++
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 9999999999999886 34799999999999999999
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1164 ~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=375.96 Aligned_cols=218 Identities=21% Similarity=0.310 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC---------
Q 000845 1004 VEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT--------- 1071 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~--------- 1071 (1255)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHHhhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHH-HHHH
Q 000845 1072 ---------------IGLYDLRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLR-EVIQ 1130 (1255)
Q Consensus 1072 ---------------i~~~~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~-~~i~ 1130 (1255)
.+...+|++|+||||+| .+|..|+++||.+.. ..+.+++.+ ...++++.++|. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~~~- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK--RAAKYIELVGLDESYL- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH--HHHHHHHHcCCChhhh-
Confidence 13456789999999986 688899999997432 233333322 011256666653 332
Q ss_pred hhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhh
Q 000845 1131 EKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVM 1209 (1255)
Q Consensus 1131 ~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~ 1209 (1255)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 160 ----------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 160 ----------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred ----------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHH
Confidence 23346799999999999999999999999999999999999999999998764 4789999999999885
Q ss_pred h-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1210 D-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1210 ~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
. ||||++|++|++++.|+++++.++
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 5 999999999999999999998765
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.90 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.3
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH----h
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD----L 1077 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~----l 1077 (1255)
|+++||+++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEccCCccCCC-chhhhcccCCC---CCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1078 RSNLGIIPQDPTLFSG-SVRYNLDPLSQ---FTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~g-TIr~Nl~~~~~---~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
|++++|+||+|.+|.+ |+++|+..... ... +++.+ +++..++.+. ......+|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-----------~~~~~~~LS~ 143 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEE------LLERVGLGDR-----------LNHYPSELSG 143 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHH------HHHHcCCchh-----------hhcChhhcCH
Confidence 6789999999999987 99999974211 111 12222 5555555433 3334467999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEE
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKL 1222 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1222 (1255)
|||||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=370.98 Aligned_cols=227 Identities=21% Similarity=0.306 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH---Hhhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY---DLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~---~lR~ 1079 (1255)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999999999999999999876653 3578
Q ss_pred ccEEEccCCccCCC-chhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
+++|+||++.+|.+ |+++|+... ...+.++..+ ...++++.+++.+... ....+||||||||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS--TVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 89999999999986 999999631 1122211111 0011555555544322 2335799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988643 7899999999999876 999999999999999999999
Q ss_pred hhcCChHHHHHHH
Q 000845 1232 LRRQDSLFAQLVK 1244 (1255)
Q Consensus 1232 l~~~~~~f~~l~~ 1244 (1255)
.+++...+..++.
T Consensus 232 ~~~~~~~~~~~~~ 244 (269)
T PRK11831 232 QANPDPRVRQFLD 244 (269)
T ss_pred hcCCcHHHHHHHH
Confidence 8765445555554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=361.84 Aligned_cols=205 Identities=24% Similarity=0.440 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996431 169999999999999999999999999999999999999999999999999976 456678999
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+|+||+|.+|.+ |+++|+.... ..+. +++.+ +++..++.+...+ ...+|||||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-----------~~~~LS~G~~q 143 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE------LADRLGMEELLDR-----------RVGGFSTGMRQ 143 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCCHHHHhh-----------hhhhcCHHHHH
Confidence 999999999986 9999996321 1222 22333 6666666554433 34579999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|++||||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999998864 47899999999999876 8999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=367.84 Aligned_cols=214 Identities=25% Similarity=0.440 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC----------
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---------- 1073 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~---------- 1073 (1255)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999963 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHhhcccEEEccCCccCC-CchhhhcccCC----CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhc
Q 000845 1074 ---LYDLRSNLGIIPQDPTLFS-GSVRYNLDPLS----QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141 (1255)
Q Consensus 1074 ---~~~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~~----~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~ 1141 (1255)
...+|+.++|+||++.+|. .|+++|+.... .... +++.+ +++..++.+...
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~~~----------- 141 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME------LLDMVGLADKAD----------- 141 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCChhHhh-----------
Confidence 2457889999999999885 79999996421 1121 22222 555555554433
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEe
Q 000845 1142 QDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMS 1218 (1255)
Q Consensus 1142 e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~ 1218 (1255)
.....||||||||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ ||++++|+
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T TIGR03005 142 HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD 221 (252)
T ss_pred cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 33467999999999999999999999999999999999999999999988653 7899999999999965 99999999
Q ss_pred CCEEEEEcChhHHhhcCC
Q 000845 1219 DGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1219 ~G~ive~G~~~eLl~~~~ 1236 (1255)
+|++++.|+++++.+.+.
T Consensus 222 ~G~i~~~g~~~~~~~~~~ 239 (252)
T TIGR03005 222 KGRIVEQGKPDEIFRQPK 239 (252)
T ss_pred CCEEEEeCCHHHHhcCCC
Confidence 999999999999987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=370.27 Aligned_cols=221 Identities=22% Similarity=0.391 Sum_probs=185.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCCCC--hHH
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTIG--LYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~i~--~~~ 1076 (1255)
-+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999953 469999999999999999999999999999999999986 47999999999987654 345
Q ss_pred hhcccEEEccCCccCCCchhhhcccC---CCC--C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1077 LRSNLGIIPQDPTLFSGSVRYNLDPL---SQF--T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~gTIr~Nl~~~---~~~--s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
+|++++|+||++.+|.+|+++|+... ... . ++++.+ +++..++.+.+. +.+...+.+|
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~~~~~~~~L 150 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK------SLTSVGLWEELG-------DRLKDSAFEL 150 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHH------HHHHcCCCchhh-------hHhhcChhhC
Confidence 78899999999999999999999632 111 1 122333 566666644321 2233445689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988778999999999999876 9999999999999999
Q ss_pred ChhHHhhcCChHH
Q 000845 1227 EPKKLLRRQDSLF 1239 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f 1239 (1255)
+++++.+.+...+
T Consensus 231 ~~~~~~~~~~~~~ 243 (251)
T PRK14244 231 TTQEIFKNPQSSK 243 (251)
T ss_pred CHHHHhcCCCChH
Confidence 9999987765544
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=368.19 Aligned_cols=225 Identities=21% Similarity=0.372 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE--P---TGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~--~---~~G~I~idG~di~~--i~~~ 1075 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 359999999999999999999999999999999999987 3 59999999999863 4456
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|++++|+||+|.+|.+|+++|+.+... ..+++..+ ...++++..++.+.+. ........+|||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQE--IVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHH--HHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 78899999999999999999999964211 12222211 0012455665544332 12334556899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988778899999999999876 99999999999999999999
Q ss_pred HhhcCChH
Q 000845 1231 LLRRQDSL 1238 (1255)
Q Consensus 1231 Ll~~~~~~ 1238 (1255)
+.+++...
T Consensus 241 ~~~~~~~~ 248 (259)
T PRK14274 241 MFSNPDDQ 248 (259)
T ss_pred HhhCCCCH
Confidence 98765443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=368.75 Aligned_cols=220 Identities=24% Similarity=0.420 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~ 1074 (1255)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 36999999999953 569999999999999999999999999999999999996 589999999999864 345
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC----CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS----QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~----~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
..+|+.|+|+||+|.+|.+|+++|+.... ...+ +++.+ +++.+++.+.+. ...+.....
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~i~-------~~~~~~~~~ 163 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET------SLKQAALWDQVK-------DDLHKSALT 163 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHH------HHHHcCCCchhh-------hhhcCCccc
Confidence 67789999999999999999999997421 1122 22232 566666654432 233455678
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
||||||||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988778899999999999865 999999999999999
Q ss_pred cChhHHhhcCC
Q 000845 1226 DEPKKLLRRQD 1236 (1255)
Q Consensus 1226 G~~~eLl~~~~ 1236 (1255)
|+++++.+.+.
T Consensus 244 g~~~~~~~~~~ 254 (267)
T PRK14237 244 DKTRNIFTNPK 254 (267)
T ss_pred CCHHHHhcCCC
Confidence 99999987543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=368.68 Aligned_cols=227 Identities=24% Similarity=0.379 Sum_probs=184.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~~ 1075 (1255)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 3445
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
.+|+.++|+||+|.+|++|+++|+.+.. ...+.+..+ .....+++.+++++.. +.. ......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~~---~~~----~~~~~~~LS~Gq~ 153 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID-QRVEESLKQAAIWKET---KDN----LDRNAQAFSGGQQ 153 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHcCCCcch---HHH----hccChhhCCHHHH
Confidence 6788999999999999999999997421 111111110 0001255665553211 111 2334568999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988677899999999999876 899999999999999999999
Q ss_pred hhcCChHH
Q 000845 1232 LRRQDSLF 1239 (1255)
Q Consensus 1232 l~~~~~~f 1239 (1255)
...+.-.|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 86644333
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=367.98 Aligned_cols=220 Identities=24% Similarity=0.396 Sum_probs=184.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc---CCC--CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL---VEP--TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl---~~~--~~G~I~idG~di~~i--~~~ 1075 (1255)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999953 4599999999999999999999999999999999997 454 589999999998754 345
Q ss_pred HhhcccEEEccCCccCCCchhhhcccC-C--CCC-----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPL-S--QFT-----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~-~--~~s-----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.+|++++|+||+|.+|.+|+++|+... . ... ++++.+ +++.+++.+.+. +.....+.+|
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~~~~~~~~L 147 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE------TLKGAALWDEVK-------DKLKESAFAL 147 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHH------HHHHcCCCcchh-------hhhhCCcccC
Confidence 778899999999999999999999632 1 111 122333 566666544332 2233455689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999988778999999999999865 9999999999999999
Q ss_pred ChhHHhhcCCh
Q 000845 1227 EPKKLLRRQDS 1237 (1255)
Q Consensus 1227 ~~~eLl~~~~~ 1237 (1255)
+++++.+++..
T Consensus 228 ~~~~~~~~~~~ 238 (250)
T PRK14245 228 DTKKIFTNPEK 238 (250)
T ss_pred CHHHHhcCCCC
Confidence 99999876543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=369.10 Aligned_cols=226 Identities=20% Similarity=0.361 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCCC--hH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTIG--LY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i~--~~ 1075 (1255)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999953 4599999999999999999999999999999999999985 7999999999986532 44
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
.+|+.++|+||++.+|+.|+++|+.... ..+.++..+ ...++++.+++.+.+. ..++ .....||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 160 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG--VVENALRSAALWDETS---DRLK----SPALSLSGGQQ 160 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCCcchh---hhhc----CChhhCCHHHH
Confidence 6788999999999999999999997421 122222111 0012566666543221 1223 34467999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999866 999999999999999999999
Q ss_pred hhcCChHH
Q 000845 1232 LRRQDSLF 1239 (1255)
Q Consensus 1232 l~~~~~~f 1239 (1255)
..++...|
T Consensus 241 ~~~~~~~~ 248 (258)
T PRK14268 241 FHNPREKS 248 (258)
T ss_pred hcCCCCHH
Confidence 87654443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=372.28 Aligned_cols=220 Identities=27% Similarity=0.438 Sum_probs=188.1
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---CEEEEcCEeCCCCChHHhh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG---GKIIIDGLDITTIGLYDLR 1078 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~---G~I~idG~di~~i~~~~lR 1078 (1255)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996444469999999999999999999999999999999999999988 8999999999887777889
Q ss_pred cccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1079 SNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1079 ~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
++++|+||+| .+++.|+++|+.+.. ..+.++..+ ...++++.+++.++....| .+|||||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~q 150 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK--IVRDVLADVGMLDYIDSEP-----------ANLSGGQKQ 150 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH--HHHHHHHHCCChhHhcCCc-----------ccCCHHHHH
Confidence 9999999998 467889999997421 133333211 0012677777766554443 579999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 1231 (1255)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988753 7899999999999988999999999999999999988
Q ss_pred hhc
Q 000845 1232 LRR 1234 (1255)
Q Consensus 1232 l~~ 1234 (1255)
...
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 753
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=376.50 Aligned_cols=228 Identities=25% Similarity=0.368 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCC--------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh
Q 000845 1003 KVEIYDLQIRYRPN--------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL 1074 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~ 1074 (1255)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HhhcccEEEccCCc--cCCC-chhhhccc----CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1075 Y---DLRSNLGIIPQDPT--LFSG-SVRYNLDP----LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1075 ~---~lR~~i~~vpQdp~--Lf~g-TIr~Nl~~----~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
. .+|++|+||||+|. |++. |+.+|+.. ......++..+ ...++++.+++.+ ..++. ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~------~~~~~----~p 152 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE--KALAMMAKVGLRP------EHYDR----YP 152 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHCCCCh------HHhcC----CC
Confidence 4 46789999999994 5553 88888741 11122222111 0112677776642 12232 23
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
..||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999987643 7899999999999976 99999999999
Q ss_pred EEEEcChhHHhhcCChHHHHH
Q 000845 1222 LVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1222 ive~G~~~eLl~~~~~~f~~l 1242 (1255)
|+|.|+++++++++...|.+.
T Consensus 233 ive~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EEEECCHHHHhcCCCCHHHHH
Confidence 999999999998766566554
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=360.55 Aligned_cols=208 Identities=25% Similarity=0.412 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCccCCC-chhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||++.+|.. |+++|+.... ... ++++.+ +++..++.+.....| .+||||||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qr~ 140 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE------LLDFVGLLEAADRLV-----------KTYSGGMRRRL 140 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCCHHHhhCCh-----------hhCCHHHHHHH
Confidence 9999998875 9999996321 111 122333 677777765543322 47999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
+||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999999988653 6899999999999876 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=367.73 Aligned_cols=223 Identities=23% Similarity=0.373 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE--P---TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~--~---~~G~I~idG~di~~i--~~~ 1075 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 459999999999999999999999999999999999853 6 599999999998653 345
Q ss_pred HhhcccEEEccCCccCCCchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|+.++|+||+|.+|+.|+++|+... +...+++..+ ....+++.+++.+.+. +.......+|||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE--AVEKSLKGASIWDEVK-------DRLHDSALGLSGGQ 153 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHcCCchhHH-------HHHhcCcccCCHHH
Confidence 678899999999999999999999632 1111111111 0012566666543332 22344556899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCC
Q 000845 1231 LLRRQD 1236 (1255)
Q Consensus 1231 Ll~~~~ 1236 (1255)
+.+++.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14239 234 MFMNPK 239 (252)
T ss_pred HHhCCC
Confidence 987654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=359.47 Aligned_cols=202 Identities=30% Similarity=0.456 Sum_probs=175.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999953 36999999999999 99999999999999999999999999999999999998776 678999999
Q ss_pred EccCCccCCC-chhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|.+ |+++|+... ...+. +++.+ +++.+++.+..+ +. ..+||||||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~----~~~LS~G~~qrv 139 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE------VLELVNLGDRAK-------KK----IGSLSGGMRRRV 139 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHH------HHHHCCCHHHHh-------Cc----hhhCCHHHHHHH
Confidence 9999999986 999999642 11221 22333 677777765433 22 247999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
+||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999988777999999999999975 8999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=357.29 Aligned_cols=202 Identities=26% Similarity=0.417 Sum_probs=176.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||++.+|. .|+++|+.... ..+++++.+ +++..++.+..... ...||||||||++|||
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~ 139 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDE------VLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIAL 139 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHH------HHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHH
Confidence 999998884 69999996431 223445554 77888887655433 2469999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998765 47899999999999976 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=371.29 Aligned_cols=218 Identities=25% Similarity=0.390 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999533 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+| .+|..|+++|+.... ..+.++..+ ...++++.+++.+.....| ..||||||||++|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~l 148 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH--RVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAI 148 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHH
Confidence 999998 478889999996321 123222111 0012677777765544332 4799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||||++|++|++++.|++++++..
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999999988653 7899999999999964 999999999999999999999764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=357.48 Aligned_cols=198 Identities=26% Similarity=0.436 Sum_probs=170.5
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred ccCC--ccCCCchhhhcccCCC-C--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1085 PQDP--TLFSGSVRYNLDPLSQ-F--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1085 pQdp--~Lf~gTIr~Nl~~~~~-~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
||+| .+|..|+++|+..... . .++++.+ +++.+++.++..+.| ..||||||||++|||
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lar 139 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAET------VLKDLDLYALKERHP-----------LSLSGGQKQRLAIAA 139 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHH------HHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHH
Confidence 9998 4678999999975321 1 1234444 788888766544333 369999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEE
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1223 (1255)
|++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999998863 57899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=366.92 Aligned_cols=228 Identities=23% Similarity=0.395 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i--~~~ 1075 (1255)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999953 4699999999999999999999999999999999999974 899999999998753 345
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|+.++|+||+|.+|..|+++|+.... ...+++..+ ...++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 151 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR--IVEESLKKAALWDEVK-------SELNKPGTRLSGGQ 151 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHcCCCchhH-------HHHhCChhhcCHHH
Confidence 6788999999999999999999997421 111222111 0012566666544332 22344557899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999987778999999999998765 99999999999999999999
Q ss_pred HhhcCChHHHH
Q 000845 1231 LLRRQDSLFAQ 1241 (1255)
Q Consensus 1231 Ll~~~~~~f~~ 1241 (1255)
+.+++...|..
T Consensus 232 ~~~~~~~~~~~ 242 (250)
T PRK14262 232 IVERPKNKLTE 242 (250)
T ss_pred HHhCCCChHHH
Confidence 98765444443
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=365.75 Aligned_cols=222 Identities=23% Similarity=0.395 Sum_probs=185.9
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~~ 1074 (1255)
|.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56999999999963 3599999999999999999999999999999999999763 69999999999875 455
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC---CC-C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
..+|++++|+||+|.+|+.|+++|+.... .. + ++++.+ +++.+++.+.+. ........+
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l~-------~~~~~~~~~ 146 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEK------SLKGAALWDEVK-------DRLKKSALG 146 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHH------HHHHcCCchhhH-------HHHhcCCCC
Confidence 67899999999999999999999996421 11 1 122222 555665543322 223344568
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987668899999999998876 999999999999999
Q ss_pred cChhHHhhcCChH
Q 000845 1226 DEPKKLLRRQDSL 1238 (1255)
Q Consensus 1226 G~~~eLl~~~~~~ 1238 (1255)
|+++++..++...
T Consensus 227 ~~~~~~~~~~~~~ 239 (250)
T PRK14240 227 GDTVDLFTNPKDK 239 (250)
T ss_pred CCHHHHHhCCCCh
Confidence 9999998664433
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=382.04 Aligned_cols=222 Identities=24% Similarity=0.405 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..++++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++..++. .|+.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999953 469999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+||+|++.+|+. |++||+.+.- ..+.+++.+ ...++++..++.++.+..| .+||||||||++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaL 160 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVAL 160 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 999999999976 9999997421 223333221 0012566666655443333 4799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|+..+
T Consensus 161 ARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988887654 36899999999999765 999999999999999999999988
Q ss_pred CChHHH
Q 000845 1235 QDSLFA 1240 (1255)
Q Consensus 1235 ~~~~f~ 1240 (1255)
+...|.
T Consensus 241 p~~~~~ 246 (377)
T PRK11607 241 PTTRYS 246 (377)
T ss_pred CccHHH
Confidence 776554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=369.28 Aligned_cols=217 Identities=24% Similarity=0.427 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC-hHHhhcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG-LYDLRSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~-~~~lR~~i~ 1082 (1255)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999533 45999999999999999999999999999999999999999999999999998765 367788999
Q ss_pred EEccCCc--cCCCchhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDPT--LFSGSVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp~--Lf~gTIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+|. ++..|+++|+..... .+.++..+ ...++++..++.+... .....||||||||++|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK--RVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVAL 147 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH--HHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHH
Confidence 9999985 567899999974321 22222111 0012566666654433 2335799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||++++|+||||||||++||+.+...+.+.|++.. .++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999988999999999999999999998754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=366.87 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=183.6
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC-------
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG------- 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~------- 1073 (1255)
.+.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999963 46999999999999999999999999999999999999999999999999986431
Q ss_pred ------hHHhhcccEEEccCCccCCC-chhhhcccCC----CCChH----HHHhccCchhHHHhccHHHHHHhhhcCccc
Q 000845 1074 ------LYDLRSNLGIIPQDPTLFSG-SVRYNLDPLS----QFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1074 ------~~~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~----~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
...+|++++|+||+|.+|.. |+++|+.... ....+ ++.+ +++..++.+...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~~~-------- 146 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK------YLAKVGIDERAQ-------- 146 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHH------HHHHcCCChhhh--------
Confidence 34678899999999999975 9999996311 11211 2222 455555543321
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLS 1216 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~v 1216 (1255)
......||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||||++
T Consensus 147 --~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 147 --GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 224 (257)
T ss_pred --hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 33456899999999999999999999999999999999999999999998865 47999999999999986 899999
Q ss_pred EeCCEEEEEcChhHHhhcCC
Q 000845 1217 MSDGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1217 l~~G~ive~G~~~eLl~~~~ 1236 (1255)
|++|++++.|+++++.+.+.
T Consensus 225 l~~G~i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 225 LHQGKIEEEGAPEQLFGNPQ 244 (257)
T ss_pred EECCEEEEeCCHHHhhhCcc
Confidence 99999999999999986543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=364.96 Aligned_cols=227 Identities=22% Similarity=0.384 Sum_probs=187.2
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCCEEEEcCEeCCCC--C
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE--P---TGGKIIIDGLDITTI--G 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~--~---~~G~I~idG~di~~i--~ 1073 (1255)
.|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 367999999999963 469999999999999999999999999999999999986 3 699999999998754 3
Q ss_pred hHHhhcccEEEccCCccCC-CchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1074 LYDLRSNLGIIPQDPTLFS-GSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
...+|++++|+||++.+|. .|+++|+... +..+.++..+ ...++++.+++.+.+.. .......+||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-------~~~~~~~~LS 150 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE--IVESSLKRVALWDEVKD-------RLKSNAMELS 150 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH--HHHHHHHHcCCchhhhH-------HhhCCcCcCC
Confidence 4567899999999999998 5999999642 1112221111 00125666666543322 1223456899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||||++||||++++|++|||||||++||+.+.+.+.+.|++..++.|+|++||+++.+.. ||++++|++|+|++.|+
T Consensus 151 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777899999999999865 99999999999999999
Q ss_pred hhHHhhcCChH
Q 000845 1228 PKKLLRRQDSL 1238 (1255)
Q Consensus 1228 ~~eLl~~~~~~ 1238 (1255)
++++...+...
T Consensus 231 ~~~~~~~~~~~ 241 (252)
T PRK14256 231 TKKIFTTPEKK 241 (252)
T ss_pred HHHHHhCCCcH
Confidence 99998765443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=368.12 Aligned_cols=219 Identities=24% Similarity=0.428 Sum_probs=183.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~~ 1075 (1255)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 469999999999999999999999999999999999865 789999999999865 3445
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC---CC-C----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-T----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.+|++++|+||+|.+|++|+++|+.... .. . ++.+.+ +++.+++.+.+. ........+|
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEE------SLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHH------HHHHcCCCcchH-------HHHhcCcccC
Confidence 6788999999999999999999997421 11 1 112222 555555432211 2233445689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988667899999999998865 9999999999999999
Q ss_pred ChhHHhhcCC
Q 000845 1227 EPKKLLRRQD 1236 (1255)
Q Consensus 1227 ~~~eLl~~~~ 1236 (1255)
+++++..++.
T Consensus 246 ~~~~~~~~~~ 255 (268)
T PRK14248 246 QTEQIFTSPK 255 (268)
T ss_pred CHHHHHhCCC
Confidence 9999987643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=375.72 Aligned_cols=231 Identities=22% Similarity=0.398 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CCEEEEcCEeCCCCChHHh
Q 000845 1003 KVEIYDLQIRYRP--NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTIGLYDL 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~---~G~I~idG~di~~i~~~~l 1077 (1255)
-++++|++++|+. +...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999953 2246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cccEEEccCC--ccCC-Cchhhhcc----cCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1078 R----SNLGIIPQDP--TLFS-GSVRYNLD----PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1078 R----~~i~~vpQdp--~Lf~-gTIr~Nl~----~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
| ++|+||||+| .+++ -|+.+|+. .....+.++..+ ...++++.+++. ++. ..++....+
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~--~~~~~L~~vgL~-------~~~-~~~~~~p~~ 161 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE--ESVRMLDAVKMP-------EAR-KRMKMYPHE 161 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCC-------ChH-HHhcCCccc
Confidence 3 4799999999 4554 37777663 222223332221 001245555442 221 224455678
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1223 (1255)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||.+|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987654 7899999999999975 9999999999999
Q ss_pred EEcChhHHhhcCChHHHHHH
Q 000845 1224 EYDEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1224 e~G~~~eLl~~~~~~f~~l~ 1243 (1255)
|.|+++++.+++...|.+.+
T Consensus 242 e~g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSIGL 261 (330)
T ss_pred EECCHHHHHhCCCCHHHHHH
Confidence 99999999988766666543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=381.83 Aligned_cols=204 Identities=25% Similarity=0.420 Sum_probs=175.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh----hcccEEEccCCccCCC-
Q 000845 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL----RSNLGIIPQDPTLFSG- 1093 (1255)
Q Consensus 1019 ~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l----R~~i~~vpQdp~Lf~g- 1093 (1255)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred chhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC
Q 000845 1094 SVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166 (1255)
Q Consensus 1094 TIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ 1166 (1255)
|+++|+.+.. ..+. +++.+ +++.+++.++..+.| .+||||||||++|||||+.+|+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e------~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALD------ALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCC
Confidence 9999997421 1222 22333 677777765554433 4799999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1167 ILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1167 ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
||||||||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999999999998864 47899999999999865 99999999999999999999988765444
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.28 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=181.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC--------h
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG--------L 1074 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~--------~ 1074 (1255)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhcccEEEccCCccCC-CchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1075 YDLRSNLGIIPQDPTLFS-GSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
..+|++++|+||+|.+|. .|+++|+... .....++..+ ...++++..++ +........+|||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~gl-----------~~~~~~~~~~LS~ 147 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA--RARELLAKVGL-----------AGKETSYPRRLSG 147 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCC-----------cchhhCChhhCCh
Confidence 457889999999999886 6999999631 1112221111 00013444443 3333445568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998765 37899999999999976 99999999999999999
Q ss_pred hhHHhhcCC
Q 000845 1228 PKKLLRRQD 1236 (1255)
Q Consensus 1228 ~~eLl~~~~ 1236 (1255)
++++.+.+.
T Consensus 228 ~~~~~~~~~ 236 (250)
T PRK11264 228 AKALFADPQ 236 (250)
T ss_pred HHHHhcCCC
Confidence 999876543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=367.48 Aligned_cols=224 Identities=25% Similarity=0.402 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH
Q 000845 1004 VEIYDLQIRYRPN-------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~-------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~ 1076 (1255)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhcccEEEccCCc--cC-CCchhhhcccC----CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcC
Q 000845 1077 ---LRSNLGIIPQDPT--LF-SGSVRYNLDPL----SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ 1142 (1255)
Q Consensus 1077 ---lR~~i~~vpQdp~--Lf-~gTIr~Nl~~~----~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e 1142 (1255)
+|+.|+|+||+|. ++ ..|+++|+... ..... +++.+ +++..++.+ .....
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~----------~~~~~ 146 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE------LLDMVGLRS----------EDADK 146 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCCh----------hhhhC
Confidence 6788999999983 44 36999998521 11111 12222 444444421 22334
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeC
Q 000845 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSD 1219 (1255)
Q Consensus 1143 ~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~ 1219 (1255)
....||||||||++||||++.+|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++
T Consensus 147 ~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 147 LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC
Confidence 4568999999999999999999999999999999999999999999988653 7899999999999975 999999999
Q ss_pred CEEEEEcChhHHhhcCChHHHHHH
Q 000845 1220 GKLVEYDEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1220 G~ive~G~~~eLl~~~~~~f~~l~ 1243 (1255)
|++++.|+++++...++..++++.
T Consensus 227 G~i~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 227 GQIVEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CEEEEECCHHHHcCCCCHHHHHHH
Confidence 999999999999875443444454
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=364.52 Aligned_cols=212 Identities=21% Similarity=0.330 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i 1081 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999953 469999999999999999999999999999999999999999999999999988776653 5679
Q ss_pred EEEccCCccCCC-chhhhcccCCCCC---------------hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQFT---------------DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~s---------------d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
+|+||++.+|.+ |+++|+....... ++++.+ +++..+ ++........
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~-----------l~~~~~~~~~ 142 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEE------VLETIG-----------LADEADRLAG 142 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHH------HHHHcC-----------CchhhcCChh
Confidence 999999999987 9999997532100 111111 333333 4333444556
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
.||||||||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 89999999999999999999999999999999999999999999987777899999999999976 99999999999999
Q ss_pred EcChhHHhh
Q 000845 1225 YDEPKKLLR 1233 (1255)
Q Consensus 1225 ~G~~~eLl~ 1233 (1255)
.|+++++..
T Consensus 223 ~~~~~~~~~ 231 (242)
T TIGR03411 223 EGSLDQVQA 231 (242)
T ss_pred eCCHHHHhc
Confidence 999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=366.10 Aligned_cols=227 Identities=22% Similarity=0.366 Sum_probs=186.2
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CC
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IG 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~ 1073 (1255)
...++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999963 359999999999999999999999999999999999987 699999999999853 34
Q ss_pred hHHhhcccEEEccCCccCCCchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
...+|++++|+||+|.+|..|+++|+... ....+++..+. ...++++..++.+ ++.......+.+||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE-IVEKSLRGAAIWD-------ELKDRLHDNAYGLSGG 171 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHcCCcc-------hHHHHHhcCcccCCHH
Confidence 56788999999999999999999999732 12222211110 0011344443322 2223334556789999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999876 9999999999999999999
Q ss_pred HHhhcCCh
Q 000845 1230 KLLRRQDS 1237 (1255)
Q Consensus 1230 eLl~~~~~ 1237 (1255)
++..++..
T Consensus 252 ~~~~~~~~ 259 (271)
T PRK14238 252 KIFSNPSD 259 (271)
T ss_pred HHHcCCCC
Confidence 99876543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.70 Aligned_cols=223 Identities=22% Similarity=0.382 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~-----~G~I~idG~di~~i--~~~ 1075 (1255)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999953 45999999999999999999999999999999999999987 69999999998643 445
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCC---CC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|+.++|+||+|.+|+.|+++|+.+.. .. ..++..+ ...++++..++++.+. ......+.+|||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq 152 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE--VVEKSLRQAALWDEVK-------DNLHKSGLALSGGQ 152 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHH--HHHHHHHHhCCchhhh-------hHhhCCcccCCHHH
Confidence 7889999999999999999999997421 11 1111111 0012455566554332 22445567899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999987 79999999999999999999
Q ss_pred HhhcCC
Q 000845 1231 LLRRQD 1236 (1255)
Q Consensus 1231 Ll~~~~ 1236 (1255)
+...+.
T Consensus 233 ~~~~~~ 238 (251)
T PRK14249 233 IFSRPR 238 (251)
T ss_pred HHhCCC
Confidence 976543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=368.92 Aligned_cols=212 Identities=24% Similarity=0.390 Sum_probs=184.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccCCC-chhhhcccCCC--------C---ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ--------F---TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~--------~---sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
|+||++.++.+ |+++|+..... . .++++.+ +++.+++.+.....| .+||||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LSgG 151 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE------AISLVGLKPLAHRLV-----------DSLSGG 151 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHH------HHHHcCCHHHhcCCc-----------ccCCHH
Confidence 99999877665 99999974210 1 1223333 677777765443332 479999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~ 231 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT 231 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999999998864 27899999999999965 99999999999999999
Q ss_pred hhHHhh
Q 000845 1228 PKKLLR 1233 (1255)
Q Consensus 1228 ~~eLl~ 1233 (1255)
++++..
T Consensus 232 ~~~~~~ 237 (265)
T PRK10575 232 PAELMR 237 (265)
T ss_pred HHHhcC
Confidence 998865
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=361.39 Aligned_cols=215 Identities=25% Similarity=0.432 Sum_probs=179.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i~ 1082 (1255)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999953 459999999999999999999999999999999999999999999999999988776553 57899
Q ss_pred EEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|+||++.+|.+ |+++|+.... ....++..+ ...++++..+ ++........+||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE--KLEELLEEFH-----------ITHLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHH
Confidence 99999999987 9999997421 111111111 0001333333 44334445568999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999999999998764 47899999999988766 99999999999999999998865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=358.79 Aligned_cols=203 Identities=27% Similarity=0.438 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hh
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR 1078 (1255)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 46999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cccEEEccCCccCC-CchhhhcccC---CCCChH----HHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1079 -SNLGIIPQDPTLFS-GSVRYNLDPL---SQFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1079 -~~i~~vpQdp~Lf~-gTIr~Nl~~~---~~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
++++|+||+|.+|. .|+++|+... .....+ ++.+ +++..++.+. .......|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-----------~~~~~~~LS~ 144 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYE------MLEKVGLEHR-----------INHRPSELSG 144 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCChhh-----------hhCChhhCCH
Confidence 68999999999996 5999999642 112211 2222 4555554433 3333467999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEE
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 1223 (1255)
|||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=369.95 Aligned_cols=215 Identities=25% Similarity=0.432 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC-hHHh
Q 000845 1003 KVEIYDLQIRYRPN----APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG-LYDL 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~-~~~l 1077 (1255)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcccEEEccCCc--cCCCchhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1078 RSNLGIIPQDPT--LFSGSVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1078 R~~i~~vpQdp~--Lf~gTIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
|++++|+||+|. +|..|+.+|+.+.. ..+. +++.+ +++.+++.++....| .+||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~gL~~~~~~~~-----------~~LS 146 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDE------SLKKVGMYEYRRHAP-----------HLLS 146 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHH------HHHHCCCHhHhhCCc-----------ccCC
Confidence 899999999984 67679999996432 1222 22333 777788776655443 4799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1226 (1255)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||++++|++|++++.|
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999864 378999999999999889999999999999999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+++++..+
T Consensus 227 ~~~~~~~~ 234 (280)
T PRK13633 227 TPKEIFKE 234 (280)
T ss_pred CHHHHhcC
Confidence 99999764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=369.60 Aligned_cols=219 Identities=22% Similarity=0.416 Sum_probs=184.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+...+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999754346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCc--cCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDPT--LFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp~--Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+|. ++..|+++|+.... ....++..+ ...++++..++.++.. ....+||+|||||++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR--RVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH--HHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 9999994 44568999986421 112222111 0012556666544332 2346799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++..+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988653 7899999999999988999999999999999999998764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=363.31 Aligned_cols=216 Identities=23% Similarity=0.367 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC------CCChHHh
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT------TIGLYDL 1077 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~------~i~~~~l 1077 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999953 46999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcccEEEccCCccCCC-chhhhcccC--C--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1078 RSNLGIIPQDPTLFSG-SVRYNLDPL--S--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~g-TIr~Nl~~~--~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
|++++|+||+|.+|.+ |+++|+... . ....++..+ ...++++..++.++. .....+||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA--RAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 8899999999999976 999999621 1 112222111 001144555544433 333457999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998765 37899999999999976 99999999999999999998
Q ss_pred Hhhc
Q 000845 1231 LLRR 1234 (1255)
Q Consensus 1231 Ll~~ 1234 (1255)
+.+.
T Consensus 228 ~~~~ 231 (242)
T PRK11124 228 FTQP 231 (242)
T ss_pred hcCc
Confidence 7653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=366.79 Aligned_cols=221 Identities=23% Similarity=0.359 Sum_probs=187.6
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CC
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IG 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~ 1073 (1255)
.+.++++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999953 4699999999999999999999999999999999999884 89999999999875 34
Q ss_pred hHHhhcccEEEccCCccCCCchhhhcccCC---CC-Ch----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-TD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
...+|+.++|+||++.+|++|+++|+.+.. .. .. +++.+ +++.+++.+.+. +..+..+.
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~~~~~~~ 167 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVER------SLRGAALWDEVK-------DRLHENAF 167 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHH------HHHHcCCChhHH-------HHhhCCcc
Confidence 567889999999999999999999996421 11 11 22333 566666654332 22344567
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
+||||||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 89999999999999999999999999999999999999999999988778899999999999865 99999999999999
Q ss_pred EcChhHHhhcCC
Q 000845 1225 YDEPKKLLRRQD 1236 (1255)
Q Consensus 1225 ~G~~~eLl~~~~ 1236 (1255)
.|+++++.+.+.
T Consensus 248 ~g~~~~~~~~~~ 259 (272)
T PRK14236 248 YGDTDTLFTSPA 259 (272)
T ss_pred cCCHHHHhcCCC
Confidence 999999986543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=364.89 Aligned_cols=219 Identities=20% Similarity=0.387 Sum_probs=186.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~~ 1075 (1255)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5999999999953 369999999999999999999999999999999999986 479999999999853 4556
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC---CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
.+|++++|+||+|.+|+.|+++|+.+... .. ++++.+ +++.+++.+.+.. .......+|||
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l~~-------~~~~~~~~LSg 154 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER------SLRQAALWDEVKD-------KLKQSGLSLSG 154 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHH------HHHHhCchhhHHH-------HhcCCcccCCH
Confidence 78899999999999998999999974221 11 122222 5677777655432 22344568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe---------C
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS---------D 1219 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~ 1219 (1255)
|||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +
T Consensus 155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~ 234 (264)
T PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY 234 (264)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccC
Confidence 9999999999999999999999999999999999999999988777899999999999876 89999998 8
Q ss_pred CEEEEEcChhHHhhcCC
Q 000845 1220 GKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1220 G~ive~G~~~eLl~~~~ 1236 (1255)
|+|++.|+++|+.+++.
T Consensus 235 g~i~~~~~~~~~~~~~~ 251 (264)
T PRK14243 235 GYLVEFDRTEKIFNSPQ 251 (264)
T ss_pred ceEEEeCCHHHHHhCCC
Confidence 99999999999987654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=364.15 Aligned_cols=227 Identities=20% Similarity=0.363 Sum_probs=189.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~--i~~~ 1075 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 459999999999999999999999999999999999874 489999999999875 3456
Q ss_pred HhhcccEEEccCCccCCCchhhhcccC-C--CCCh-HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPL-S--QFTD-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~-~--~~sd-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|++++|+||+|.+|.+|+++|+... . ...+ ++..+ ...++++.+++.+.+... ....+.+||+||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq 151 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE--RVEESLKAAALWDEVKDK-------LDKSALGLSGGQ 151 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHH--HHHHHHHHcCCchhHHHH-------HhCCcccCCHHH
Confidence 789999999999999999999999742 1 1112 21111 011267777776655422 234456899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999877 89999999999999999999
Q ss_pred HhhcCChHHH
Q 000845 1231 LLRRQDSLFA 1240 (1255)
Q Consensus 1231 Ll~~~~~~f~ 1240 (1255)
+...+.+.+.
T Consensus 232 ~~~~~~~~~~ 241 (250)
T PRK14266 232 IFINPKDKRT 241 (250)
T ss_pred HHhCCCChHH
Confidence 9876555443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=374.68 Aligned_cols=227 Identities=20% Similarity=0.329 Sum_probs=184.4
Q ss_pred eEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCCEEEEcCEeCCCCChHH
Q 000845 1003 KVEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE----PTGGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~----~~~G~I~idG~di~~i~~~~ 1076 (1255)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996432 359999999999999999999999999999999999997 48999999999999988776
Q ss_pred hhc----ccEEEccCCc--cCC-Cchhhhc----ccCCCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhc
Q 000845 1077 LRS----NLGIIPQDPT--LFS-GSVRYNL----DPLSQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141 (1255)
Q Consensus 1077 lR~----~i~~vpQdp~--Lf~-gTIr~Nl----~~~~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~ 1141 (1255)
+|+ .|+||||+|. +++ -|+.+|+ ........ +.+.+ +++.+++.+.. ....
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~------~L~~~gL~~~~--------~~l~ 148 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAID------LLNQVGIPDPA--------SRLD 148 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHCCCCChH--------HHHh
Confidence 543 6999999995 343 2555544 32211222 22333 67777764321 1123
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEe
Q 000845 1142 QDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMS 1218 (1255)
Q Consensus 1142 e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~ 1218 (1255)
....+||||||||++|||||+.+|++||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~ 228 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY 228 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34568999999999999999999999999999999999999999999988753 7899999999999965 99999999
Q ss_pred CCEEEEEcChhHHhhcCChHHHHHH
Q 000845 1219 DGKLVEYDEPKKLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1219 ~G~ive~G~~~eLl~~~~~~f~~l~ 1243 (1255)
+|+|+|.|+++++.+++...|.+.+
T Consensus 229 ~G~ive~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 229 AGQVVETGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCEEEEECCHHHHhhCCCChHHHHH
Confidence 9999999999999988766665443
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=365.52 Aligned_cols=225 Identities=21% Similarity=0.355 Sum_probs=187.0
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~~ 1074 (1255)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999963 4599999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
..+|++++|+||+|.+|+.|+++|+.+.. ...+.+..+ ...++++.+++.+.+... .......||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G 154 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDE--IVESALKGAALWQEVKDK-------LNKSALGLSGG 154 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCcchhhhH-------hcCCcccCCHH
Confidence 67888999999999999999999996421 112222111 001267777775544321 23345689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe-----CCEEEE
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS-----DGKLVE 1224 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-----~G~ive 1224 (1255)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999999999999987777899999999999976 89999998 599999
Q ss_pred EcChhHHhhcCCh
Q 000845 1225 YDEPKKLLRRQDS 1237 (1255)
Q Consensus 1225 ~G~~~eLl~~~~~ 1237 (1255)
.|+++++.+++..
T Consensus 235 ~~~~~~~~~~~~~ 247 (259)
T PRK14260 235 FGVTTQIFSNPLD 247 (259)
T ss_pred eCCHHHHhcCCCC
Confidence 9999999865443
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=359.61 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEccCCccCC-CchhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+|+||+|.+|. .|+++|+.... ... ++++.+ +++..++.+...+.| .+|||||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LSgG~~q 138 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE------LLELVGLSGFENAYP-----------HQLSGGMRQ 138 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCChhhhhCCc-----------ccCCHHHHH
Confidence 99999999987 69999996321 111 122333 666776655544332 479999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEe--CCEEEEEcCh
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMS--DGKLVEYDEP 1228 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~~ 1228 (1255)
|++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 139 rl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999998764 37899999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=361.63 Aligned_cols=217 Identities=23% Similarity=0.367 Sum_probs=180.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC--hHHhhccc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG--LYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~--~~~lR~~i 1081 (1255)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999953 46999999999999999999999999999999999999999999999999997643 35678899
Q ss_pred EEEccCCccCC-CchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||++.+|. .|+++|+.... ..+.++..+ ...++++..++.+. .......||||||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK--QARELLAKVGLAER-----------AHHYPSELSGGQQQRVA 146 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH--HHHHHHHHcCChHH-----------HhcChhhcCHHHHHHHH
Confidence 99999999886 59999996421 112222111 00124454444333 33344679999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++.++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999999998764 47899999999999965 999999999999999999998765
Q ss_pred C
Q 000845 1235 Q 1235 (1255)
Q Consensus 1235 ~ 1235 (1255)
+
T Consensus 227 ~ 227 (240)
T PRK09493 227 P 227 (240)
T ss_pred C
Confidence 3
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=365.93 Aligned_cols=211 Identities=21% Similarity=0.389 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999953 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCccCCC-chhhhcccCC-C-------CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS-Q-------FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~-~-------~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
+||++.+|.+ |+++|+++.. . .. ++++.+ +++.+++.+... .....|||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-----------~~~~~LS~G~ 143 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ------AMEQTRINHLAD-----------RRLTDLSGGQ 143 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHH------HHHHcCCHHHHc-----------CCcccCCHHH
Confidence 9999999877 9999997531 0 11 112322 566666654432 2345799999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
|||++||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 223 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHH
Confidence 999999999999999999999999999999999999998764 47899999999999876 9999999999999999999
Q ss_pred HHhh
Q 000845 1230 KLLR 1233 (1255)
Q Consensus 1230 eLl~ 1233 (1255)
++..
T Consensus 224 ~~~~ 227 (255)
T PRK11231 224 EVMT 227 (255)
T ss_pred HhcC
Confidence 9875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=366.50 Aligned_cols=220 Identities=21% Similarity=0.404 Sum_probs=185.2
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCCC--Ch
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTI--GL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~i--~~ 1074 (1255)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++... +.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45999999999963 459999999999999999999999999999999999997 6899999999998653 45
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC---CCC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QFT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
..+|++++|+||++.+|.+|+++|+.... ... ++++.+ +++..++.+.+.. .......+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~i~~-------~~~~~~~~LS 182 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEE------SLRRAALWDEVKD-------QLDSSGLDLS 182 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHH------HHHHcCCCchhHH-------HHhCCcccCC
Confidence 67789999999999999999999997421 111 233333 6666666433321 2234456899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEE-EEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVL-SMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~-vl~~G~ive~G 1226 (1255)
||||||++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g 262 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeC
Confidence 99999999999999999999999999999999999999999988777899999999999876 99975 57999999999
Q ss_pred ChhHHhhcCC
Q 000845 1227 EPKKLLRRQD 1236 (1255)
Q Consensus 1227 ~~~eLl~~~~ 1236 (1255)
+++++.+++.
T Consensus 263 ~~~~~~~~~~ 272 (285)
T PRK14254 263 DTDKIFENPE 272 (285)
T ss_pred CHHHHHhCcC
Confidence 9999986543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=356.20 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=184.6
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh----HHhhcc
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL----YDLRSN 1080 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~----~~lR~~ 1080 (1255)
.+.|+.|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 567999999755 569999999999999999999999999999999999999999999999998876542 345678
Q ss_pred cEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1081 LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1081 i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
++|+||+|.+|+.|+++|+.......+++..+ +++.+++.+.+..+|.|+++.++....+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKA------VTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHH------HHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999998654444555554 788889988888899999999888889999999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCE
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQN--TIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGK 1221 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~--~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1221 (1255)
++++|++|||||||++||+.+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999888877 444332 3689999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=357.78 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||++.+|. .|+++|+.... ....++..+ ...++++..++.+.... ....||||||||++|||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lar 143 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE--RVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGR 143 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHH
Confidence 999999986 59999997421 122222111 00125666666554433 23579999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|++++|+++||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998864 37899999999999876 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=357.49 Aligned_cols=204 Identities=31% Similarity=0.473 Sum_probs=170.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++|++++|+.+..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999964334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1085 PQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1085 pQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
||+| .++..|+++|+.... ..++++..+ ...++++..++.+... .....||||||||++|||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE--RVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHH
Confidence 9998 367889999996421 122221111 0012555555544433 334679999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
|++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999988653 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=361.00 Aligned_cols=212 Identities=27% Similarity=0.423 Sum_probs=178.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i~ 1082 (1255)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877655 467899
Q ss_pred EEccCCccCCC-chhhhcccCC-CC--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS-QF--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~-~~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|+||++.+|.+ |+++|+.... .. .+++..+ ++++..+ +++........+||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la 143 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD-----EIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIA 143 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHH-----HHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHH
Confidence 99999999987 9999996321 11 1111111 1233322 122233344567999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
||++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 144 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 144 RALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999999998653 7899999999999986 9999999999999999999873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=368.11 Aligned_cols=219 Identities=26% Similarity=0.397 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC----ChHH
Q 000845 1004 VEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI----GLYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i----~~~~ 1076 (1255)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999998764 3467
Q ss_pred hhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1077 LRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1077 lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
+|++|+|+||+| .+|+.|+++|+.+.. ..+.++..+. ..++++..++.+ ........+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~----------~~~~~~~~~LSgG~ 150 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL--AREKLALVGISE----------SLFEKNPFELSGGQ 150 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCCh----------hhhhCCcccCCHHH
Confidence 889999999998 688899999996421 1233332210 011344444421 12233456799999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
|||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998764 37899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000845 1230 KLLRR 1234 (1255)
Q Consensus 1230 eLl~~ 1234 (1255)
++...
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=365.22 Aligned_cols=222 Identities=20% Similarity=0.334 Sum_probs=188.1
Q ss_pred CCCceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCC---
Q 000845 999 PPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDIT--- 1070 (1255)
Q Consensus 999 p~~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~--- 1070 (1255)
|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 45678999999999963 3699999999999999999999999999999999999875 7999999998874
Q ss_pred -CCChHHhhcccEEEccCCccCCCchhhhcccCC---CCC-----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhc
Q 000845 1071 -TIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QFT-----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV 1141 (1255)
Q Consensus 1071 -~i~~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~s-----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~ 1141 (1255)
......+|+.++|+||+|.+|.+|+++|+.... ... ++++.+ +++.+++.+.+. ...+
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l~-------~~~~ 156 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVEN------ALRNAALWDEVK-------DRLG 156 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHH------HHHHcCCchhhh-------HHHh
Confidence 334557889999999999999999999996421 111 233333 666666543222 2334
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCC
Q 000845 1142 QDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDG 1220 (1255)
Q Consensus 1142 e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G 1220 (1255)
....+||||||||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 455789999999999999999999999999999999999999999999987777899999999999975 9999999999
Q ss_pred EEEEEcChhHHhhcC
Q 000845 1221 KLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1221 ~ive~G~~~eLl~~~ 1235 (1255)
++++.|+++++..++
T Consensus 237 ~i~~~g~~~~~~~~~ 251 (265)
T PRK14252 237 ELIEFGATDTIFIKP 251 (265)
T ss_pred EEEEeCCHHHHHhCC
Confidence 999999999998654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=362.17 Aligned_cols=222 Identities=21% Similarity=0.369 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i--~~~ 1075 (1255)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999999653 345
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC---C-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---F-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
.+|++++|+||++.+|+.|+++|+.+... . +.++..+ ...++++.+++.+.+.. ........||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 152 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK--IVEWALKKAALWDEVKD-------DLKKSALKLSGGQ 152 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHH--HHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence 67889999999999999999999974211 1 1111111 00126666666433221 2233456899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 000845 1231 LLRRQ 1235 (1255)
Q Consensus 1231 Ll~~~ 1235 (1255)
+...+
T Consensus 233 ~~~~~ 237 (251)
T PRK14270 233 IFLEP 237 (251)
T ss_pred HhcCC
Confidence 97654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.24 Aligned_cols=224 Identities=21% Similarity=0.337 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i--~~~ 1075 (1255)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999953 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC---C-Ch----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---F-TD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~-sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
..|+.++|+||+|.+|++|+++|+.+... . .. +.+.+ +++.+++.+.+ .+.....+.+|
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l-------~~~~~~~~~~L 150 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEK------SLKGAALWDEV-------KDRLHDSALSL 150 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHH------HHHHhcCchhh-------HHHhhcChhhC
Confidence 77889999999999999999999974321 1 11 11222 45555543322 22344556789
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++.+|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcC
Confidence 999999999999999999999999999999999999999999988777899999999999975 9999999999999999
Q ss_pred ChhHHhhcCChHHHH
Q 000845 1227 EPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f~~ 1241 (1255)
+++++..++...+.+
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (253)
T PRK14261 231 KTTQIFENPHEELTE 245 (253)
T ss_pred CHHHHHhCCCcHHHH
Confidence 999998765444444
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=359.93 Aligned_cols=218 Identities=23% Similarity=0.341 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEccCCccCCC-chhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+|+||++.+|.+ |+++|+..... ...++..+. ..++++.. + +++.........||||||||++|||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~--~~~~l~~~---------~-~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER--IKWVYELF---------P-RLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH--HHHHHHHH---------H-HHHHHHhCchhhCCHHHHHHHHHHH
Confidence 999999999985 99999974221 122222110 00122222 1 1111122334679999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999998764 47999999999998765 999999999999999999999753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=357.88 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH---Hhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY---DLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~---~lR~~ 1080 (1255)
++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+|+.
T Consensus 2 l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 689999999952 34699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred cEEEccCCccCC-CchhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++|+||+|.+|. .|+++|+.... ... ++++.+ +++..++.+.....| .+||||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~ 143 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA------ALRQVGLEHKADAFP-----------EQLSGGEQ 143 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCChhhhhCCh-----------hhCCHHHH
Confidence 999999999986 59999996421 111 233444 777777765544333 47999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999999864 47899999999999987 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=357.24 Aligned_cols=201 Identities=26% Similarity=0.383 Sum_probs=171.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh---HHhhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL---YDLRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~---~~lR~~ 1080 (1255)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987764 347889
Q ss_pred cEEEccCCccCCC-chhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++|+||+|.+|.. |+++|+.... ..+. +++.+ +++.+++.+..... ..+||||||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~-----------~~~LS~G~~ 142 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA------ALELVGLSHKHRAL-----------PAELSGGEQ 142 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCCHHHhhCC-----------hhhcCHHHH
Confidence 9999999999985 9999996421 1222 22333 66666665544332 247999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
||++||||++++|+|+||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 143 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 143 QRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999998864 47899999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=364.02 Aligned_cols=223 Identities=25% Similarity=0.372 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCCC-hHH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTIG-LYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i~-~~~ 1076 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4699999999999999999999999999999999999985 7999999999998763 456
Q ss_pred hhcccEEEccCCccCCCchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+. ..++++.+++.+.. ++.+.....+||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV--AQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH--HHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 789999999999999999999997421 1233333220 01134455543322 2234455678999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999876 999999999999999999999
Q ss_pred hhcCC
Q 000845 1232 LRRQD 1236 (1255)
Q Consensus 1232 l~~~~ 1236 (1255)
.+.+.
T Consensus 250 ~~~~~ 254 (276)
T PRK14271 250 FSSPK 254 (276)
T ss_pred HhCcC
Confidence 87643
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.54 Aligned_cols=222 Identities=24% Similarity=0.372 Sum_probs=181.0
Q ss_pred CceEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC----C-
Q 000845 1001 TGKVEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT----I- 1072 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~----i- 1072 (1255)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46899999999996432 259999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHhhcccEEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1073 GLYDLRSNLGIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1073 ~~~~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
+...+|++|+|+||+| .+|..|+++|+.+.. ....++..+. ..++++..++. +.........|
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~ll~~~~L~----------~~~~~~~~~~L 151 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLVQLP----------EDYVKRSPFEL 151 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCC----------hhHhcCChhhC
Confidence 3567888999999998 477889999997421 1222222110 00133333331 11223345689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 7899999999999865 99999999999999
Q ss_pred EcChhHHhhc
Q 000845 1225 YDEPKKLLRR 1234 (1255)
Q Consensus 1225 ~G~~~eLl~~ 1234 (1255)
.|+++++...
T Consensus 232 ~g~~~~~~~~ 241 (289)
T PRK13645 232 IGSPFEIFSN 241 (289)
T ss_pred eCCHHHHhcC
Confidence 9999988654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.43 Aligned_cols=220 Identities=26% Similarity=0.407 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
-++++|++..|.. -.+|++|||++++||.++++||||+||||++++|+|+.++.+|+|.++|.||...+++. .|..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999964 46999999999999999999999999999999999999999999999999999999887 58889
Q ss_pred EEEccCCccCCC-chhhhcccCCCC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||||...+|+. ||.|||...... .+++-++ ..+++...-+| -|.......+.+|||||+|.+||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----------~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----------RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccccc----------ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHH
Confidence 999999999976 999999743221 1111111 01222222233 2444555667899999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||+.+|++|+|||||.+|-|.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998874 5699999999999876 9999999999999999999999874
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=341.86 Aligned_cols=172 Identities=36% Similarity=0.624 Sum_probs=161.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999996544569999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHcc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~ 1163 (1255)
++|+|.+|++|+++|+ ||||||||++||||+++
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 9999999999999886 99999999999999999
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCEE
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGKL 1222 (1255)
Q Consensus 1164 ~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1222 (1255)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999998864 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=360.07 Aligned_cols=212 Identities=24% Similarity=0.384 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999963 369999999999999999999999999999999999999999999999999987654 3688999
Q ss_pred EccCCccCCC-chhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|.+ |+++|+.+.. ..+ ++++.+ +++..++.++....| .+||+|||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~lS~G~~qrl 139 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE------ALDLVQLEGYANRKP-----------SQLSGGQQQRV 139 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCchhhcCCh-----------hhCCHHHHHHH
Confidence 9999999976 9999996321 111 122333 566666665544433 57999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+||||++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999999999999999988653 7899999999999876 8999999999999999999998
Q ss_pred hcCC
Q 000845 1233 RRQD 1236 (1255)
Q Consensus 1233 ~~~~ 1236 (1255)
+.+.
T Consensus 220 ~~~~ 223 (232)
T cd03300 220 EEPA 223 (232)
T ss_pred hCCc
Confidence 7543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=372.45 Aligned_cols=216 Identities=24% Similarity=0.403 Sum_probs=181.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999963 4599999999999999999999999999999999999999999999999998754 356789999
Q ss_pred EEccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|+||++.+|. .|+++|+..+. ..+.++..+. ..++++.+++.+. +++.+ ..||||||||++||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la 147 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV--IPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLA 147 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHH
Confidence 9999999885 59999996321 1233322210 0114555554332 33333 47999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999998864 47899999999999976 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=361.51 Aligned_cols=213 Identities=23% Similarity=0.367 Sum_probs=183.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCcc-CCCchhhhcccCCC---CC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1083 IIPQDPTL-FSGSVRYNLDPLSQ---FT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1083 ~vpQdp~L-f~gTIr~Nl~~~~~---~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
|+||++.+ +..|+++|+..... .+ ++.+.+ +++.+++.+...+ ....||||||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-----------~~~~LSgGe~qr 142 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAA------ALAQVDLAHLAGR-----------DYPQLSGGEQQR 142 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHH------HHHHcCCHhHhcC-----------CcccCCHHHHHH
Confidence 99999987 67799999964321 11 122333 6666666543322 335799999999
Q ss_pred HHHHHHHc------cCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEE
Q 000845 1155 IGLGRVVL------RRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1155 l~lARAlL------~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1225 (1255)
++|||||+ .+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 99999999 5999999999999999999999999998865 47899999999999875 999999999999999
Q ss_pred cChhHHhhc
Q 000845 1226 DEPKKLLRR 1234 (1255)
Q Consensus 1226 G~~~eLl~~ 1234 (1255)
|+++++...
T Consensus 223 ~~~~~~~~~ 231 (258)
T PRK13548 223 GTPAEVLTP 231 (258)
T ss_pred CCHHHHhCh
Confidence 999998753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=368.72 Aligned_cols=220 Identities=29% Similarity=0.436 Sum_probs=180.8
Q ss_pred eEEEEEEEEEeCCCC---CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC----ChH
Q 000845 1003 KVEIYDLQIRYRPNA---PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI----GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~---~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i----~~~ 1075 (1255)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3699999999999999999999999999999999999999999999999998653 245
Q ss_pred HhhcccEEEccCC--ccCCCchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1076 DLRSNLGIIPQDP--TLFSGSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp--~Lf~gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
..|+.++|+||+| .+|..|+++|+.+. ...+.++..+ ...++++.+++.. ........+||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~----------~~~~~~~~~LSgG 149 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE--KALKWLKKVGLSE----------DLISKSPFELSGG 149 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCCh----------hHhhCCcccCCHH
Confidence 6788999999998 57888999999631 1122222211 0012455555431 1223334689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998864 47899999999999865 999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
+++.+.
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 998753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=360.08 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=175.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999963 46999999999999999999999999999999999999999999999998763 4678999
Q ss_pred EEccCCccCC-CchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1083 IIPQDPTLFS-GSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1083 ~vpQdp~Lf~-gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
|+||+|.+|+ .|+++|+.+.. ...++++.+ +++..++.+.... ...+||||||||++||||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~------~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~lara 147 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ------ALAAVGLADRANE-----------WPAALSGGQKQRVALARA 147 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHH------HHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999987 69999997532 112344444 6777777654332 335799999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
|+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 148 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 148 LIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999998764 37899999999999865 9999999999999988754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.39 Aligned_cols=213 Identities=22% Similarity=0.353 Sum_probs=185.0
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999963 4699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCCccCC-CchhhhcccCC--C------CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS--Q------FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~--~------~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
+|+||++.+|. .|+++|+.+.. . .. ++.+.+ +++..++.+... .....|||
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-----------~~~~~LS~ 146 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTK------AMQATGITHLAD-----------QSVDTLSG 146 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHH------HHHHcCCHHHhc-----------CCcccCCh
Confidence 99999998875 59999997431 1 11 122333 666666655432 23467999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988643 7899999999998866 9999999999999999
Q ss_pred ChhHHhh
Q 000845 1227 EPKKLLR 1233 (1255)
Q Consensus 1227 ~~~eLl~ 1233 (1255)
+++++..
T Consensus 227 ~~~~~~~ 233 (265)
T PRK10253 227 APKEIVT 233 (265)
T ss_pred CHHHHhh
Confidence 9999875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=375.61 Aligned_cols=210 Identities=22% Similarity=0.307 Sum_probs=175.7
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE----eCCCCChHHhh----cccEEEccCCc
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL----DITTIGLYDLR----SNLGIIPQDPT 1089 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~----di~~i~~~~lR----~~i~~vpQdp~ 1089 (1255)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+...+| ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 67777665543 57999999999
Q ss_pred cCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCC
Q 000845 1090 LFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR 1165 (1255)
Q Consensus 1090 Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~ 1165 (1255)
+|+ .|+++|+.+.. ..+.++..+ ...++++.++|.++....| .+||||||||++|||||+++|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~--~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK--RVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 998 69999997421 122222111 0112677777765543332 469999999999999999999
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCChHHH
Q 000845 1166 QILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFA 1240 (1255)
Q Consensus 1166 ~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~f~ 1240 (1255)
+|||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.++...|.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999999988753 7899999999999855 999999999999999999999987655444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=375.08 Aligned_cols=216 Identities=24% Similarity=0.425 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999953 45999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEccCCccCC-CchhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1083 IIPQDPTLFS-GSVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~vpQdp~Lf~-gTIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|+||++.+|. .|+++|+..+.. .+.++..+. ..++++.+++. +..++.+ .+||||||||++||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~ll~~~~L~-------~~~~~~~----~~LS~G~kqrv~lA 184 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV--IPSLLEFARLE-------SKADARV----SDLSGGMKRRLTLA 184 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCc-------hhhCCCh----hhCCHHHHHHHHHH
Confidence 9999999874 599999974321 222222110 00134444433 2334444 47999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999998864 47899999999999976 999999999999999999999764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=361.22 Aligned_cols=222 Identities=19% Similarity=0.296 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCC--ChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTI--GLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i--~~~ 1075 (1255)
.+.+++.+++|.. .++|+|+||+|+|||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999953 4699999999999999999999999999999999999986 799999999998643 444
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCC---C---ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---F---TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~---sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
.+|+.++|+||+|.+|..|+++|+..... . ..+++.+ +++.+++.+.+.. ..++...+|||
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~i~~-------~~~~~~~~LS~ 152 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKH------ALQGAALWDEVKD-------KLKVSGLSLSG 152 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHH------HHHHcCCchhhhh-------hhhCCcccCCH
Confidence 67889999999999999999999974321 1 1123333 7777777555432 22345568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe--------CC
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS--------DG 1220 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~--------~G 1220 (1255)
|||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCc
Confidence 9999999999999999999999999999999999999999988777899999999999876 99999996 89
Q ss_pred EEEEEcChhHHhhcCChHH
Q 000845 1221 KLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1221 ~ive~G~~~eLl~~~~~~f 1239 (1255)
++++.|+++++++++...+
T Consensus 233 ~i~~~g~~~~~~~~~~~~~ 251 (261)
T PRK14263 233 YLVEMGPTAQIFQNPREQL 251 (261)
T ss_pred eEEEeCCHHHHHhCCCcHH
Confidence 9999999999987654333
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.00 Aligned_cols=217 Identities=24% Similarity=0.419 Sum_probs=180.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999953 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEccCCccCCC-chhhhcccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||++.+|.+ |+++|+..... .+.++..+ ...+.+..+ |++.........||||||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----------~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ 147 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----------RANELMEEF--HIEHLRDSMGQSLSGGERRRVE 147 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----------HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHH
Confidence 999999999885 99999975321 11111111 112233322 3444444455689999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||++++|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999999999998764 47899999999988765 899999999999999999998753
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=370.77 Aligned_cols=215 Identities=23% Similarity=0.380 Sum_probs=182.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999953 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||+|.+|.+ |++||+.... ....++..+ ...++++..++.+. ......+||||||||++|||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ--RVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHH
Confidence 9999999987 9999996422 112221111 00114555554433 33344679999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999999999988778999999999999977 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=357.18 Aligned_cols=210 Identities=26% Similarity=0.409 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999963 469999999999999999999999999999999999999999999999999986653 4788999
Q ss_pred EccCCccCCC-chhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|++ |+++|+.... ..+ ++++.+ +++..++.++..+ ...+||+||+||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-----------~~~~lS~G~~qrl 139 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE------LLELVQLEGLGDR-----------YPNQLSGGQRQRV 139 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHH------HHHHcCCHhHhhC-----------ChhhCCHHHHHHH
Confidence 9999999986 9999996421 111 122222 5566665544332 2357999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999987644 7899999999999876 9999999999999999999998
Q ss_pred hc
Q 000845 1233 RR 1234 (1255)
Q Consensus 1233 ~~ 1234 (1255)
+.
T Consensus 220 ~~ 221 (237)
T TIGR00968 220 DH 221 (237)
T ss_pred cC
Confidence 64
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=362.36 Aligned_cols=220 Identities=20% Similarity=0.370 Sum_probs=186.1
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~~ 1074 (1255)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999963 4699999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCCC---C---ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---F---TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---~---sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
..+|++|+|+||++.+|+.|+++|+..... . .++++.+ +++.+++.+.+.. ........||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~l~~-------~~~~~~~~LS 163 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVED------SLRRAAIWEEVKD-------KLKEKGTALS 163 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHH------HHHHcccchhhHH-------HhcCCcccCC
Confidence 567899999999999999999999964211 1 1222222 6677776544432 2233456899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe---------
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS--------- 1218 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~--------- 1218 (1255)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999988778999999999999975 99999997
Q ss_pred CCEEEEEcChhHHhhcCC
Q 000845 1219 DGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1219 ~G~ive~G~~~eLl~~~~ 1236 (1255)
+|++++.|+++++..++.
T Consensus 244 ~G~~~~~g~~~~~~~~~~ 261 (274)
T PRK14265 244 RGKLVEFSPTEQMFGSPQ 261 (274)
T ss_pred CceEEEeCCHHHHHhCCC
Confidence 899999999999987644
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.16 Aligned_cols=225 Identities=22% Similarity=0.360 Sum_probs=187.1
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CCEEEEcCEeCCC--CCh
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDITT--IGL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~-----~G~I~idG~di~~--i~~ 1074 (1255)
+.|+++||+++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 47999999999953 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC---C-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS---Q-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
..+|+.++|+||++.+|..|++||+.... . .++.+.++ ...++++.+++.+++.. ..+.....||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 154 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD--IVESALKDADLWDEIKH-------KIHKSALDLSGG 154 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHcCCcchhhh-------HhcCCcccCCHH
Confidence 57789999999999999999999996421 1 12222111 00126777776554432 233455689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeC-----CEE
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSD-----GKL 1222 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~-----G~i 1222 (1255)
||||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE
Confidence 9999999999999999999999999999999999999998753 47999999999999876 899999999 999
Q ss_pred EEEcChhHHhhcCCh
Q 000845 1223 VEYDEPKKLLRRQDS 1237 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~~ 1237 (1255)
++.|+++++..++..
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 235 VEFGLTKKIFNSPHD 249 (261)
T ss_pred EEeCCHHHHHhCCCC
Confidence 999999999876544
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.19 Aligned_cols=223 Identities=23% Similarity=0.360 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCC-CCChHH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDIT-TIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~-~i~~~~ 1076 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4699999999999999999999999999999999999986 5999999999986 456677
Q ss_pred hhcccEEEccCCccCCCchhhhcccCC---CCC-hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1077 LRSNLGIIPQDPTLFSGSVRYNLDPLS---QFT-DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~s-d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
+|+.++|+||+|.+|..|+++|+.... ... +++..+ ...++++.+++.+.+. .........||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE--VVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQ 151 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHH--HHHHHHHHcCCchhhh-------HHhhcCcccCCHHHH
Confidence 899999999999999999999997421 111 111111 0011555566544332 223344568999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++||||++.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999887 999999999999999999998
Q ss_pred hhcCC
Q 000845 1232 LRRQD 1236 (1255)
Q Consensus 1232 l~~~~ 1236 (1255)
..++.
T Consensus 232 ~~~~~ 236 (249)
T PRK14253 232 FSNPK 236 (249)
T ss_pred HcCCC
Confidence 76543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=356.19 Aligned_cols=206 Identities=23% Similarity=0.335 Sum_probs=175.7
Q ss_pred eEEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---h
Q 000845 1003 KVEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---L 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---l 1077 (1255)
.|+++|++++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999996432 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcccEEEccCCccCCC-chhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1078 -RSNLGIIPQDPTLFSG-SVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1078 -R~~i~~vpQdp~Lf~g-TIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
++.++|+||+|.+|.+ |+++|+... ..... +++.+ +++..++.+.....| ..||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS 148 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKA------LLEQLGLGKRLDHLP-----------AQLS 148 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCCHhHhhCCh-----------hhCC
Confidence 3679999999999885 999999632 11221 22333 677777765544333 4799
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEEEEE
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1225 (1255)
||||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|+++|.
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999987642 7899999999999888999999999999875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=352.24 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .. .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 578999999953 22 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EccCCccCCC-chhhhcccCCC-------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLSQ-------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~~-------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|.+ |+++|+.+... ..++++.+ +++.+++.+.....| .+||||||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 137 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEV------ALARVGLAGLEKRLP-----------GELSGGERQRV 137 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHH------HHHHcCCHHHHhCCc-----------ccCCHHHHHHH
Confidence 9999999986 99999974211 11233444 788888766655443 47999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
+||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999864 37899999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.09 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=182.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~--i~~~ 1075 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 4456
Q ss_pred HhhcccEEEccCCccCC-CchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1076 DLRSNLGIIPQDPTLFS-GSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
.+|+.++|+||++.+|. .|+++|+... +..+.++..+ ...++++.+++.+.+. ........+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDE--LVEKSLRGANLWNEVK-------DRLDKPGGGLSGG 152 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHcCCchhhh-------hHhhCCcccCCHH
Confidence 78899999999999997 4999999632 1111211111 0012566666643322 2233445689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEe------CCEEE
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMS------DGKLV 1223 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~------~G~iv 1223 (1255)
||||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999999999999987667899999999999865 99999997 89999
Q ss_pred EEcChhHHhhcC
Q 000845 1224 EYDEPKKLLRRQ 1235 (1255)
Q Consensus 1224 e~G~~~eLl~~~ 1235 (1255)
+.|++++++.++
T Consensus 233 ~~~~~~~~~~~~ 244 (258)
T PRK14241 233 EIDDTEKIFSNP 244 (258)
T ss_pred ecCCHHHHHhCc
Confidence 999999998654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=365.60 Aligned_cols=227 Identities=22% Similarity=0.340 Sum_probs=184.8
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCCC--Ch
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTI--GL 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~i--~~ 1074 (1255)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 46999999999953 359999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHhhcccEEEccCCccCCCchhhhcccCC---CC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1075 YDLRSNLGIIPQDPTLFSGSVRYNLDPLS---QF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~---~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
..+|++++|+||+|.+|.+|+++|+.... .. +.++..+ ...++++.+++.+.+. + ........||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG 186 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEE--IVEKSLRKAALWDEVS---D----RLDKNALGLSGG 186 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHH--HHHHHHHHhCCccchh---h----HhhCChhhCCHH
Confidence 45788999999999999999999997421 11 1111111 0011555555532221 1 123345679999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
||||++|||||+++|++|||||||++||+++.+.+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|+++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999876 9999999999999999999
Q ss_pred HHhhcCChHH
Q 000845 1230 KLLRRQDSLF 1239 (1255)
Q Consensus 1230 eLl~~~~~~f 1239 (1255)
++.+++...+
T Consensus 267 ~~~~~~~~~~ 276 (286)
T PRK14275 267 QLFTNPKDRM 276 (286)
T ss_pred HHHhCCCcHH
Confidence 9987654433
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.41 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC--CCChHHhhccc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT--TIGLYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~--~i~~~~lR~~i 1081 (1255)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++|
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999953 45999999999999999999999999999999999999999999999999985 33456778899
Q ss_pred EEEccCCc--cCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPT--LFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~--Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||+|. +|..|+.+|+.... ..+.++..+ ...++++.+++.++.. ....+||||||||++
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR--RVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVA 146 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHH
Confidence 99999985 57789999986421 122222211 0012566666654422 233579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998864 47899999999999965 999999999999999999998764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=371.85 Aligned_cols=226 Identities=19% Similarity=0.318 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCC--CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCCCEEEEcCEeCCCCChHH
Q 000845 1003 KVEIYDLQIRYRP--NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE----PTGGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~--~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~----~~~G~I~idG~di~~i~~~~ 1076 (1255)
-++++|++++|+. +...+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22469999999999999999999999999999999999986 58999999999999888766
Q ss_pred hh----cccEEEccCCcc--CC-Cchhhhccc-C------CC-CC-----hHHHHhccCchhHHHhccHHHHHHhhhcCc
Q 000845 1077 LR----SNLGIIPQDPTL--FS-GSVRYNLDP-L------SQ-FT-----DQEIWEVTIPSQVLEKCQLREVIQEKKEGL 1136 (1255)
Q Consensus 1077 lR----~~i~~vpQdp~L--f~-gTIr~Nl~~-~------~~-~s-----d~ei~~~~~~~~al~~~~l~~~i~~lp~gl 1136 (1255)
++ +.|+||||+|.. +. -||.+|+.. . +. .. ++++.+ +++.++|.+.-.
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~L~~~gL~~~~~------ 150 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIE------LLHRVGIKDHKD------ 150 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHH------HHHHCCCCChHH------
Confidence 53 479999999963 33 488888741 0 00 01 122333 677777753211
Q ss_pred cchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCE
Q 000845 1137 DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNM 1213 (1255)
Q Consensus 1137 dt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~Dr 1213 (1255)
........||||||||++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. |||
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 11223357999999999999999999999999999999999999999999998653 7899999999999976 999
Q ss_pred EEEEeCCEEEEEcChhHHhhcCChHHHHH
Q 000845 1214 VLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1214 I~vl~~G~ive~G~~~eLl~~~~~~f~~l 1242 (1255)
|+||++|+|+|.|+++++.+++...|.+.
T Consensus 229 i~vm~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 229 INVLYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999999999998776667653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.67 Aligned_cols=217 Identities=25% Similarity=0.422 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC--CChHHhhccc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT--IGLYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~--i~~~~lR~~i 1081 (1255)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 689999999963 3459999999999999999999999999999999999999999999999999852 2345678999
Q ss_pred EEEccCC--ccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDP--TLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp--~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||+| .+|..|+++|+.... ..+.++..+ ...++++.+++.++.. . ...+||||||||++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~--~~~~~l~~~~L~~~~~-------~----~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK--RVKEALKAVGMEGFEN-------K----PPHHLSGGQKKRVA 147 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHCCCchhhc-------C----ChhhCCHHHHHHHH
Confidence 9999998 578899999996321 122222211 0012666666654322 2 23579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||++.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999865 37899999999999875 999999999999999999998764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=354.94 Aligned_cols=197 Identities=28% Similarity=0.417 Sum_probs=166.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999953 45999999999999999999999999999999999999999999999998764 468899999
Q ss_pred ccCCcc---CCCchhhhcccCCCC--------C---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1085 PQDPTL---FSGSVRYNLDPLSQF--------T---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1085 pQdp~L---f~gTIr~Nl~~~~~~--------s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
||+|.+ |+.|+++|+...... . ++++.+ +++..++.+.... ...+||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-----------~~~~LSgG 136 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE------ALERVGLSELADR-----------QIGELSGG 136 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHH------HHHHcCCHHHHhC-----------CcccCCHH
Confidence 999986 668999999642110 1 122333 6777777654432 23579999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999999998865 57899999999999976 8999999986 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.11 Aligned_cols=229 Identities=25% Similarity=0.384 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC------EeCCCCChHH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG------LDITTIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG------~di~~i~~~~ 1076 (1255)
.++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+++...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999953 4699999999999999999999999999999999999999997666655 6777777778
Q ss_pred hhcccEEEccCCccCCC-chhhhcccCC---CC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1077 LRSNLGIIPQDPTLFSG-SVRYNLDPLS---QF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~---~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
+|++++|+||+|.+|.+ |+++|+.... .. .+++..+ ...++++..++.+.+. ......+..||+||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK--IVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 89999999999999986 9999997421 11 2233321 0012555555543221 12233456799999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|||++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987777999999999999955 99999999999999999999
Q ss_pred HhhcCChHHHHH
Q 000845 1231 LLRRQDSLFAQL 1242 (1255)
Q Consensus 1231 Ll~~~~~~f~~l 1242 (1255)
+.+.+...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (257)
T PRK14246 239 IFTSPKNELTEK 250 (257)
T ss_pred HHhCCCcHHHHH
Confidence 987765545443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=346.58 Aligned_cols=221 Identities=23% Similarity=0.392 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE---eCCCCChHHhhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL---DITTIGLYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~---di~~i~~~~lR~ 1079 (1255)
.|.++|++..|+. ..+++|||++|+.||.+|+.||||||||||+++|.|+..|++|.|.++|. |.++++. -.+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RDR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hhc
Confidence 3678888888853 45899999999999999999999999999999999999999999999999 7776433 347
Q ss_pred ccEEEccCCccCCC-chhhhcccCCC-----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQ-----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~~~-----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+||+|.|+..||.- ||++||.++-+ .++.++.. ...+.|+.++|..+-+..| .+|||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~--rv~elL~lvqL~~la~ryP-----------~QLSGGQrQ 144 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA--RVEELLRLVQLEGLADRYP-----------AQLSGGQRQ 144 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHH--HHHHHHHHhcccchhhcCc-----------hhcChHHHH
Confidence 89999999999965 99999986532 22333322 1122577777766655554 479999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|+||||||.-.|++|+||||.++||..-.+.+++-|++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 9999999999999999999999999999999999988764 37899999999999866 99999999999999999999
Q ss_pred HhhcCChHHH
Q 000845 1231 LLRRQDSLFA 1240 (1255)
Q Consensus 1231 Ll~~~~~~f~ 1240 (1255)
....|++.|-
T Consensus 225 v~~~P~s~fV 234 (345)
T COG1118 225 VYDHPASRFV 234 (345)
T ss_pred HhcCCCccce
Confidence 9998887763
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=357.47 Aligned_cols=212 Identities=24% Similarity=0.412 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh---HHhh
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL---YDLR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~---~~lR 1078 (1255)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999995431 269999999999999999999999999999999999999999999999999988774 5678
Q ss_pred cccEEEccCC--ccC-CCchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1079 SNLGIIPQDP--TLF-SGSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1079 ~~i~~vpQdp--~Lf-~gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
++++|+||+| .++ ..|+++|+... ....+++..+. ...++++..++. +........+|||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~----------~~~~~~~~~~LS~G~ 150 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE-AVLLLLVGVGLP----------EEVLNRYPHELSGGQ 150 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHH-HHHHHHHHCCCC----------hhHhhCCchhcCHHH
Confidence 8999999999 344 47999998631 11111111110 000133333331 123344556899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||++||||++.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999988754 7899999999999985 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=353.72 Aligned_cols=208 Identities=23% Similarity=0.389 Sum_probs=180.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. . ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999887654 3678999
Q ss_pred EccCCccCCC-chhhhcccCC-C-C-----ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS-Q-F-----TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~-~-~-----sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|.+ |+++|+.... . . .++++.+ +++.+++.+.+...| ..||||||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 138 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHA------IARQMGIEDLLARLP-----------GQLSGGQRQRV 138 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHH------HHHHcCcHHHHhCCc-----------ccCCHHHHHHH
Confidence 9999999986 9999997421 1 1 1233444 788888877665544 36999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+||||++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988653 7899999999999876 8999999999999999999998
Q ss_pred hc
Q 000845 1233 RR 1234 (1255)
Q Consensus 1233 ~~ 1234 (1255)
..
T Consensus 219 ~~ 220 (232)
T PRK10771 219 SG 220 (232)
T ss_pred hC
Confidence 64
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=366.55 Aligned_cols=220 Identities=24% Similarity=0.430 Sum_probs=185.4
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCCEEEEcCEeCCCC--C
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-----PTGGKIIIDGLDITTI--G 1073 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-----~~~G~I~idG~di~~i--~ 1073 (1255)
...|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999963 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHhhcccEEEccCCccCCCchhhhcccCCC---------------C-----ChHHHHhccCchhHHHhccHHHHHHhhh
Q 000845 1074 LYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQ---------------F-----TDQEIWEVTIPSQVLEKCQLREVIQEKK 1133 (1255)
Q Consensus 1074 ~~~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~---------------~-----sd~ei~~~~~~~~al~~~~l~~~i~~lp 1133 (1255)
...+|++++|+||++.+|++|+++|+..... . .++++.+ +++.+++.+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~----- 189 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER------SLRQAALWDE----- 189 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHH------HHHHcCCchh-----
Confidence 5678899999999999999999999974210 0 0112222 4555554332
Q ss_pred cCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cC
Q 000845 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CN 1212 (1255)
Q Consensus 1134 ~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~D 1212 (1255)
++........+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||
T Consensus 190 --~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 190 --VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD 267 (305)
T ss_pred --hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 233445566789999999999999999999999999999999999999999999988777899999999999876 99
Q ss_pred EE-EEEeCCEEEEEcChhHHhhcC
Q 000845 1213 MV-LSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1213 rI-~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
+| ++|++|++++.|+++++.+.+
T Consensus 268 ~i~~~l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTDKIFENP 291 (305)
T ss_pred EEEEEecCCEEEEeCCHHHHHhCc
Confidence 97 578999999999999998653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=362.55 Aligned_cols=226 Identities=25% Similarity=0.377 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeCC-------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH
Q 000845 1003 KVEIYDLQIRYRP-------NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~-------~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~ 1075 (1255)
-|+++||+++|+. +..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 124699999999999999999999999999999999999999999999999999765555
Q ss_pred HhhcccEEEccCCc--cCCC-chhhhcccC---C-CCC----hHHHHhccCchhHHHhccHH-HHHHhhhcCccchhcCC
Q 000845 1076 DLRSNLGIIPQDPT--LFSG-SVRYNLDPL---S-QFT----DQEIWEVTIPSQVLEKCQLR-EVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~--Lf~g-TIr~Nl~~~---~-~~s----d~ei~~~~~~~~al~~~~l~-~~i~~lp~gldt~v~e~ 1143 (1255)
..|++++|+||+|. ++.. |+.+|+... . ... ++++.+ +++.+++. +... . .
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-------~----~ 146 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE------TLRQVGLLPDHAS-------Y----Y 146 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHH------HHHHcCCChHHHh-------c----C
Confidence 66778999999985 4443 788887521 1 111 123333 67777763 3222 1 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCC
Q 000845 1144 GANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDG 1220 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G 1220 (1255)
..+||||||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 25799999999999999999999999999999999999999999999864 37899999999999987 9999999999
Q ss_pred EEEEEcChhHHhhcC-ChHHHHHHHH
Q 000845 1221 KLVEYDEPKKLLRRQ-DSLFAQLVKE 1245 (1255)
Q Consensus 1221 ~ive~G~~~eLl~~~-~~~f~~l~~~ 1245 (1255)
++++.|+++++.+.+ ...+++++..
T Consensus 227 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 227 EVVERGSTADVLASPLHELTKRLIAG 252 (267)
T ss_pred EEEecCCHHHHhcCCCCHHHHHHHHh
Confidence 999999999998764 3456667654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=361.55 Aligned_cols=211 Identities=22% Similarity=0.348 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999953 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCc-cCCCchhhhcccCCC--------CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1084 IPQDPT-LFSGSVRYNLDPLSQ--------FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1084 vpQdp~-Lf~gTIr~Nl~~~~~--------~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
+||+|. .+..|+++|+..... .. ++++.+ +++.+++.+.. ......|||||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~-----------~~~~~~LS~G~ 142 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR------ALARTELSHLA-----------DRDMSTLSGGE 142 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHH------HHHHcCcHhhh-----------cCCcccCCHHH
Confidence 999995 456799999964310 01 112333 56666654432 22345799999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
|||++||||++.+|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 9999999999999999999999999999999999999987643 6899999999999965 9999999999999999999
Q ss_pred HHhh
Q 000845 1230 KLLR 1233 (1255)
Q Consensus 1230 eLl~ 1233 (1255)
++..
T Consensus 223 ~~~~ 226 (256)
T TIGR03873 223 EVLT 226 (256)
T ss_pred HhhC
Confidence 8865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=360.94 Aligned_cols=227 Identities=24% Similarity=0.366 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----CCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT-----GGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~-----~G~I~idG~di~~--i~~~ 1075 (1255)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred HhhcccEEEccCCccCCC-chhhhcccC---CCC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1076 DLRSNLGIIPQDPTLFSG-SVRYNLDPL---SQF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~---~~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
.+|+.++|+||+|.+|.+ |+++|+... ... .+++..+. ..+.++..++.+.+ +..++.. ..+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G 152 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV--AERSLRGAALWDEV---KDRLKTP----ATGLSGG 152 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHcCcchhh---hhhhcCC----cccCCHH
Confidence 778899999999999985 999999632 111 22322220 00133444443322 2223333 4679999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
||||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667999999999999986 8999999999999999999
Q ss_pred HHhhcCChHHH
Q 000845 1230 KLLRRQDSLFA 1240 (1255)
Q Consensus 1230 eLl~~~~~~f~ 1240 (1255)
+++.++...+.
T Consensus 233 ~~~~~~~~~~~ 243 (252)
T PRK14272 233 QLFTNPRDERT 243 (252)
T ss_pred HHHhCcCcHHH
Confidence 99877654443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=354.96 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=178.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+++|.. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 45999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccCCCchhhhcccC----CCC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDPTLFSGSVRYNLDPL----SQF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp~Lf~gTIr~Nl~~~----~~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+|.+|+.|+++|+... ... .++++.+ +++..++.+ +.......+||||||||++|
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~------~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~l 148 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD------DLERFALPD----------TILTKNIAELSGGEKQRISL 148 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHH------HHHHcCCCh----------HHhcCCcccCCHHHHHHHHH
Confidence 99999999999999999642 111 1112222 455555432 22334456899999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEe-CCEEEEEcChh
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMS-DGKLVEYDEPK 1229 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~-~G~ive~G~~~ 1229 (1255)
||||+++|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999999999865 3789999999999998899999995 67778888885
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=352.44 Aligned_cols=200 Identities=28% Similarity=0.469 Sum_probs=169.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999953 469999999999999999999999999999999999999999999999998753 46789999
Q ss_pred EccCCccCCC-chhhhcccCC---CCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||++.+|.+ |+++|+.... ..+. +++.+ +++..++.+. ......+||||||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-----------~~~~~~~LS~G~~qrl 137 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDE------WLERLELSEY-----------ANKRVEELSKGNQQKV 137 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHH------HHHHcCChHH-----------HhCcHhhCCHHHHHHH
Confidence 9999999986 9999986421 1111 11222 4555554433 3334467999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
+||||++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998764 47899999999999876 9999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=357.72 Aligned_cols=225 Identities=23% Similarity=0.354 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEe-----CCCCChHH-
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD-----ITTIGLYD- 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~d-----i~~i~~~~- 1076 (1255)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999953 469999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---hhcccEEEccCCc--cCC-Cchhhhccc----CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCcc-chhcCCCC
Q 000845 1077 ---LRSNLGIIPQDPT--LFS-GSVRYNLDP----LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD-SLVVQDGA 1145 (1255)
Q Consensus 1077 ---lR~~i~~vpQdp~--Lf~-gTIr~Nl~~----~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld-t~v~e~G~ 1145 (1255)
.|+.++|+||+|. ++. .|+++|+.. +......++.+ ...++++.+ |++ +.....+.
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~l~~~--~l~~~~~~~~~~ 150 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----------TAGDWLERV--EIDAARIDDLPT 150 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----------HHHHHHHHc--CCChhHHhCCCc
Confidence 3567999999984 333 478888742 11111112111 122333333 332 34556678
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
+||||||||++||||++++|+||||||||++||+++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999987643 7899999999999975 999999999999
Q ss_pred EEEcChhHHhhcCChHHHHH
Q 000845 1223 VEYDEPKKLLRRQDSLFAQL 1242 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~~~f~~l 1242 (1255)
++.|+++++..++...|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 231 VESGLTDQVLDDPQHPYTQL 250 (258)
T ss_pred EEeCCHHHHhcCCCCHHHHH
Confidence 99999999987655455443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=351.72 Aligned_cols=207 Identities=26% Similarity=0.388 Sum_probs=173.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---hhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---lR~~ 1080 (1255)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEEccCCccC-CCchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1081 LGIIPQDPTLF-SGSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1081 i~~vpQdp~Lf-~gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
++|+||+|.+| ..|+++|+... ...++++..+ ...++++..++.+...+ ...+||||||||++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 147 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--RVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVG 147 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHH--HHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHH
Confidence 99999999874 57999999742 1223333221 00125666666554332 23579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999999998764 46899999999999977 89999999999863
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=359.87 Aligned_cols=226 Identities=21% Similarity=0.336 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i 1081 (1255)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999953 469999999999999999999999999999999999999999999999999988876654 4569
Q ss_pred EEEccCCccCCC-chhhhcccCCC-CChH----HHHhc---c-CchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ-FTDQ----EIWEV---T-IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~-~sd~----ei~~~---~-~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
+|+||+|.+|.+ |+++|+..... ..+. .+... . ...+.. ....+.++.+ |++........+|||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERV--GLLEHANRQAGNLAYGQ 158 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhC--ChhhhhhCChhhCCHHH
Confidence 999999999986 99999974211 0000 00000 0 000000 0112222222 44444555567899999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
|||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999987643 7899999999999976 999999999999999999
Q ss_pred hHHhhc
Q 000845 1229 KKLLRR 1234 (1255)
Q Consensus 1229 ~eLl~~ 1234 (1255)
+++..+
T Consensus 239 ~~~~~~ 244 (255)
T PRK11300 239 EEIRNN 244 (255)
T ss_pred HHHhhC
Confidence 998753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=358.70 Aligned_cols=222 Identities=21% Similarity=0.357 Sum_probs=184.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CCCEEEEcCEeCCC--CChH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE--P---TGGKIIIDGLDITT--IGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~--~---~~G~I~idG~di~~--i~~~ 1075 (1255)
-|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 469999999999999999999999999999999999975 4 59999999999864 3445
Q ss_pred HhhcccEEEccCCccCCCchhhhcccC---CCC-Ch----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCC
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPL---SQF-TD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~---~~~-sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1147 (1255)
.+|++++|+||+|.+|..|+++|+... ... .+ +++.+ +++.+++.+.+ .........+|
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~i-------~~~~~~~~~~L 149 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVET------SLKQAAIWDEV-------KDHLHESALSL 149 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHH------HHHHcCCccch-------hhHHhcCcccC
Confidence 678899999999999999999999632 111 11 12222 45555554322 22233445689
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999976 9999999999999999
Q ss_pred ChhHHhhcCChHH
Q 000845 1227 EPKKLLRRQDSLF 1239 (1255)
Q Consensus 1227 ~~~eLl~~~~~~f 1239 (1255)
++.+...++...+
T Consensus 230 ~~~~~~~~~~~~~ 242 (252)
T PRK14255 230 DTKQMFLNPKEKE 242 (252)
T ss_pred CHHHHhcCCCChH
Confidence 9999987655443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=388.27 Aligned_cols=203 Identities=24% Similarity=0.341 Sum_probs=167.2
Q ss_pred CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCCEEEEcCEeCCCCChHHhhcccEEEccCCc-cCC
Q 000845 1016 NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE--PTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT-LFS 1092 (1255)
Q Consensus 1016 ~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~--~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~-Lf~ 1092 (1255)
+....|+|||=-++||--.|++|.||||||||++.|.+-.. ..+|+|+|||.+..+ +..++.+|||.|++. +=.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34468999999999999999999999999999999998643 357999999998765 789999999999775 545
Q ss_pred CchhhhcccC------CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCC-
Q 000845 1093 GSVRYNLDPL------SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR- 1165 (1255)
Q Consensus 1093 gTIr~Nl~~~------~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~- 1165 (1255)
-||||-|.+- .+.+++|-.+ ..+++++..+|.++- |..||.-|..||..||.||.||=-|+.||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~--yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYE--YVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHH--HHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 6999998531 2345544322 112366666665553 45688888999999999999999999999
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhh--hhcCEEEEEeC-CEEEEEcChhH
Q 000845 1166 QILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATV--MDCNMVLSMSD-GKLVEYDEPKK 1230 (1255)
Q Consensus 1166 ~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti--~~~DrI~vl~~-G~ive~G~~~e 1230 (1255)
.||.||||||+||+++...|.+.+|+.. .|+||++.-|.++.. +.+|+++.|++ |+.|-.|+..+
T Consensus 950 ~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred eeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 8999999999999999999999999875 689999999999964 56999999975 89999988654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=353.88 Aligned_cols=210 Identities=24% Similarity=0.453 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|.. + +|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 3 8999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EccCCccCC-CchhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||++.+|. .|+++|+... ...+. +++.+ +++.+++.++..+.+ .+||||||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qrl 138 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE------IAEMLGIDHLLNRKP-----------ETLSGGEQQRV 138 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCChhHHhcCc-----------ccCCHHHHHHH
Confidence 999999995 6999999632 11121 22333 677777766554433 47999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
+||||++++|++++|||||++||+.+.+.+.+.|++... ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999998643 7999999999999876 9999999999999999999998
Q ss_pred hcC
Q 000845 1233 RRQ 1235 (1255)
Q Consensus 1233 ~~~ 1235 (1255)
+.+
T Consensus 219 ~~~ 221 (235)
T cd03299 219 KKP 221 (235)
T ss_pred hCc
Confidence 754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=364.04 Aligned_cols=213 Identities=28% Similarity=0.522 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.++++||+.+|.. ...+|+||||+|++||.+|++||||||||||+++|+|++.|++|+|.++|.|...- ....|++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999963 34699999999999999999999999999999999999999999999999998764 678899999
Q ss_pred EEccCCccCCC-chhhhcccCCC---C----ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ---F----TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~---~----sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
|+||+|.+++. |++|||+++.. . .++.+.+ +++..+|.+.- +..+ ..||+|||||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~------~l~~~~L~~~~-------~~~~----~~lS~G~kqr 144 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEE------LLELFGLEDKA-------NKKV----RTLSGGMKQR 144 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHH------HHHHcCCchhh-------Ccch----hhcCHHHHHH
Confidence 99999998876 99999986431 1 1234444 78888776521 2222 4699999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-N-CTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++||+||+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 4 699999999999988 999999999999999999998
Q ss_pred hhc
Q 000845 1232 LRR 1234 (1255)
Q Consensus 1232 l~~ 1234 (1255)
...
T Consensus 225 ~~~ 227 (293)
T COG1131 225 KEK 227 (293)
T ss_pred HHh
Confidence 654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=368.43 Aligned_cols=199 Identities=26% Similarity=0.440 Sum_probs=171.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC-chh
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVR 1096 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g-TIr 1096 (1255)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999976 345678999999999999986 999
Q ss_pred hhcccCC---CCChH----HHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEE
Q 000845 1097 YNLDPLS---QFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILV 1169 (1255)
Q Consensus 1097 ~Nl~~~~---~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILi 1169 (1255)
+|+.+.. ..+.+ ++.+ +++.+++.+.. +. ...+||||||||++|||||+++|++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEE------LLELFELGEAA-------DR----PVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH------HHHHcCChhHh-------CC----chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9997432 11212 2322 66666665432 22 235799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1170 LDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1170 LDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998864 47899999999999976 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.80 Aligned_cols=216 Identities=28% Similarity=0.442 Sum_probs=182.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|.|+|||.|+.+ .+...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 678899999975 2348999999999999999999999999999999999999999999999999987 45678999999
Q ss_pred EccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
++-+.-|+.. |.||||.+|+ ..++.++... ....-+..++.++. |..+ .+||-|+|||++|||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kar--i~~l~k~l~l~~~~-------~rRv----~~~S~G~kqkV~iAR 146 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKAR--IAELSKRLQLLEYL-------DRRV----GEFSTGMKQKVAIAR 146 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHhChHHHH-------HHHH----hhhchhhHHHHHHHH
Confidence 9977777765 9999998765 2344443210 00133344444443 3344 369999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||+++|+|++||||||+||.-+.+.+++.+++... +++||+-||.++.++. ||||+++.+|+++..|+++++.++
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999988765 8999999999999985 999999999999999999999875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=351.23 Aligned_cols=204 Identities=28% Similarity=0.448 Sum_probs=169.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC--CChHHhhccc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT--IGLYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~--i~~~~lR~~i 1081 (1255)
|+++||+++|+. .++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999954 469999999999999999999999999999999999999999999999999853 4556678999
Q ss_pred EEEccCCccCC-CchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
+|+||+|.+|. .|+++|+.... ..+.++..+ ...++++..++.+... ....+||||||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 145 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE--RALELLEKVGLADKAD-----------AYPAQLSGGQQQRVA 145 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH--HHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHH
Confidence 99999999987 59999996421 222222111 0011455555544333 334579999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999865 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=348.39 Aligned_cols=201 Identities=20% Similarity=0.394 Sum_probs=173.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 578999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EccCCccCCC-chhhhccc-CCC-C-----ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDP-LSQ-F-----TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~-~~~-~-----sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||+|.+|.+ |+++|+.. ... . .++++.+ +++..++.+...+.| .+||||||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~~-----------~~LS~G~~qrl 137 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVD------AAQQVGIADYLDRLP-----------EQLSGGQRQRV 137 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHH------HHHHcCcHHHhhCCc-----------ccCCHHHHHHH
Confidence 9999999975 99999963 111 1 1233433 778888776655444 36999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
+||||++++|+|+||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999999998653 7899999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=356.15 Aligned_cols=224 Identities=20% Similarity=0.331 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC----CCCEEEEcCEeCCCCChHHhh
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP----TGGKIIIDGLDITTIGLYDLR 1078 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~----~~G~I~idG~di~~i~~~~lR 1078 (1255)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEccCCc-cCC--Cchhhhccc----CC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1079 SNLGIIPQDPT-LFS--GSVRYNLDP----LS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1079 ~~i~~vpQdp~-Lf~--gTIr~Nl~~----~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
+.++|+||+|. .|. .|+.+|+.. .+ ...++++.+ +++.+++.+. ++.++.....||||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~--------~~~~~~~~~~LS~G 144 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA------ALEAVGLENA--------ARVLKLYPFEMSGG 144 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHH------HHHHcCCCCh--------hhhhhcCCcccCHH
Confidence 67999999985 343 477777532 11 122334444 6776666432 11334455689999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999988643 7899999999999975 99999999999999999
Q ss_pred hhHHhhcCCh-HHHHHHHH
Q 000845 1228 PKKLLRRQDS-LFAQLVKE 1245 (1255)
Q Consensus 1228 ~~eLl~~~~~-~f~~l~~~ 1245 (1255)
++++.+++.. .++.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~ 243 (254)
T PRK10418 225 VETLFNAPKHAVTRSLVSA 243 (254)
T ss_pred HHHHhhCCCCHHHHHHHHh
Confidence 9999876544 45555543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=397.63 Aligned_cols=232 Identities=20% Similarity=0.305 Sum_probs=156.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh------ccC---CCCCCE------------
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALF------RLV---EPTGGK------------ 1061 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~------rl~---~~~~G~------------ 1061 (1255)
.++++|++. ..|+|+||+|++||.+||+|.||||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 588888852 2599999999999999999999999999998764 111 122222
Q ss_pred EEEcCEeCCCCC----------hHHhhcccE---------EEccCCccCC-----------CchhhhcccCCC-------
Q 000845 1062 IIIDGLDITTIG----------LYDLRSNLG---------IIPQDPTLFS-----------GSVRYNLDPLSQ------- 1104 (1255)
Q Consensus 1062 I~idG~di~~i~----------~~~lR~~i~---------~vpQdp~Lf~-----------gTIr~Nl~~~~~------- 1104 (1255)
|.||-.++..-+ .+.+|.-++ |-++.-...+ |+++.|+.+..+
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 334433332111 122343332 2222222221 566666654221
Q ss_pred -----------------CChHHHHhccCchhHHHhc----cH---HHHHHhhhcCccc-hhcCCCCCCChhHHHHHHHHH
Q 000845 1105 -----------------FTDQEIWEVTIPSQVLEKC----QL---REVIQEKKEGLDS-LVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1105 -----------------~sd~ei~~~~~~~~al~~~----~l---~~~i~~lp~gldt-~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
.+-.|+.+.. ..++++-. .+ .+.+.. -||+. .++.....||||||||+.|||
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~lt-v~E~l~~f~~~~~i~~~l~~L~~--vgL~~l~l~~~~~tLSgGEkQRl~LAr 843 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMT-VEEALEFFEAIPKIARKLQTLVD--VGLGYIKLGQPATTLSGGEAQRVKLAK 843 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCc-HHHHHHHHHhchhhhHHHHHHHH--CCCCcccccCCcccCCHHHHHHHHHHH
Confidence 1122222110 00111111 00 011111 25654 356677899999999999999
Q ss_pred HHccCC---CeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEE------eCCEEEEEcChh
Q 000845 1160 VVLRRR---QILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSM------SDGKLVEYDEPK 1229 (1255)
Q Consensus 1160 AlL~~~---~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~ 1229 (1255)
+|+++| +++||||||++||+++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+
T Consensus 844 aL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 844 ELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred HHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 999999 9999999999999999999999998865 478999999999999889999999 799999999999
Q ss_pred HHhhcCChHHHHHHH
Q 000845 1230 KLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1230 eLl~~~~~~f~~l~~ 1244 (1255)
++.+++++.-.+.++
T Consensus 924 el~~~~~s~t~~~l~ 938 (943)
T PRK00349 924 EVAKVEASYTGRYLK 938 (943)
T ss_pred HHHhCcccHHHHHHH
Confidence 999887666555554
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=357.89 Aligned_cols=223 Identities=22% Similarity=0.352 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CCEEEEcCEeCCCC-----Ch
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTI-----GL 1074 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~---~G~I~idG~di~~i-----~~ 1074 (1255)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999953 46999999999999999999999999999999999999886 49999999998654 23
Q ss_pred HHhhcccEEEccCCccCCC-chhhhcccCCC------------CC---hHHHHhccCchhHHHhccHHHHHHhhhcCccc
Q 000845 1075 YDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQ------------FT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1075 ~~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~~------------~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
..+|++++|+||++.+|.+ |+++|+..... .. .+++.+ +++..++.+..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~--------- 146 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQ------ALTRVGMVHFA--------- 146 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHH------HHHHcCCHHHH---------
Confidence 5678899999999998885 99999963210 01 112222 55555554433
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVL 1215 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~ 1215 (1255)
.....+||||||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|+
T Consensus 147 --~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 147 --HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred --hCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 23345799999999999999999999999999999999999999999999875 37899999999998765 99999
Q ss_pred EEeCCEEEEEcChhHHhhcCChHHHHHHHHHH
Q 000845 1216 SMSDGKLVEYDEPKKLLRRQDSLFAQLVKEYW 1247 (1255)
Q Consensus 1216 vl~~G~ive~G~~~eLl~~~~~~f~~l~~~~~ 1247 (1255)
+|++|++++.|+++++ . .....+++....
T Consensus 225 ~l~~g~i~~~g~~~~~-~--~~~~~~~~~~~~ 253 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF-D--NERFDHLYRSIN 253 (262)
T ss_pred EEECCEEEEeCCHHHh-c--cHHHHHHHhhhh
Confidence 9999999999999996 3 245666665544
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=357.35 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC--------CCEEEEcCEeCCCCChH
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT--------GGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~--------~G~I~idG~di~~i~~~ 1075 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999953 46999999999999999999999999999999999999998 99999999999888888
Q ss_pred HhhcccEEEccCCc-cCCCchhhhcccCCC--------CCh---HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC
Q 000845 1076 DLRSNLGIIPQDPT-LFSGSVRYNLDPLSQ--------FTD---QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD 1143 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~-Lf~gTIr~Nl~~~~~--------~sd---~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~ 1143 (1255)
.+|+.++|+||++. +|..|+++|+..... .+. +.+.+ +++..++. +..+..
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~-----------~~~~~~ 142 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQ------ALALAGAT-----------ALVGRD 142 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHH------HHHHcCcH-----------hhhcCC
Confidence 88889999999986 578899999964211 111 11222 55555543 334445
Q ss_pred CCCCChhHHHHHHHHHHHc---------cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-c
Q 000845 1144 GANWSMGQRQLIGLGRVVL---------RRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-C 1211 (1255)
Q Consensus 1144 G~~LSgGQrQrl~lARAlL---------~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~ 1211 (1255)
...||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.+ |
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~ 222 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA 222 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 5689999999999999999 59999999999999999999999999998653 6899999999999975 9
Q ss_pred CEEEEEeCCEEEEEcChhHHhh
Q 000845 1212 NMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1212 DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
|++++|++|++++.|++++++.
T Consensus 223 d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 223 DRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred CEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=370.34 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC----ChHHhhc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI----GLYDLRS 1079 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i----~~~~lR~ 1079 (1255)
|++ |++++|.. . .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 99999953 2 23 99999999999999999999999999999999999999999999998653 2445688
Q ss_pred ccEEEccCCccCC-CchhhhcccCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1080 NLGIIPQDPTLFS-GSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~-gTIr~Nl~~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+++|+||++.+|+ .|+++|+.+.. ...++++.+ +++.+++.+..... ..+||||||||++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~------~l~~~gl~~~~~~~-----------~~~LSgGq~qRval 139 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK------IVALLGIEPLLDRY-----------PGSLSGGEKQRVAI 139 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHH------HHHHcCCchhhhCC-----------cccCCHHHHHHHHH
Confidence 9999999999997 59999997432 223344444 77777776554433 35799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..+
T Consensus 140 araL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999999988654 6899999999998876 999999999999999999999988
Q ss_pred CCh
Q 000845 1235 QDS 1237 (1255)
Q Consensus 1235 ~~~ 1237 (1255)
+..
T Consensus 220 p~~ 222 (352)
T PRK11144 220 SAM 222 (352)
T ss_pred cch
Confidence 753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=355.80 Aligned_cols=216 Identities=21% Similarity=0.276 Sum_probs=173.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCCEEEEcCEeCCCCChHHh-hcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV--EPTGGKIIIDGLDITTIGLYDL-RSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~--~~~~G~I~idG~di~~i~~~~l-R~~ 1080 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999953 46999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred cEEEccCCccCCC-chhhhcccCC----C------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLS----Q------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~----~------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
++|+||+|.+|++ |+++|+.... . .+.++..+ ...++++..++.+.. ++..+. ..|||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~------~~~~~~---~~LS~ 147 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK--LLKAKLALLGMDEEF------LNRSVN---EGFSG 147 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH--HHHHHHHHcCCchhh------cccccc---cCcCH
Confidence 9999999999986 8999985311 0 01111110 001144444442111 121111 24999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh--cCEEEEEeCCEEEEEc
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD--CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G 1226 (1255)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47899999999999976 7999999999999999
Q ss_pred ChhHHh
Q 000845 1227 EPKKLL 1232 (1255)
Q Consensus 1227 ~~~eLl 1232 (1255)
++++..
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 997654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=324.58 Aligned_cols=224 Identities=23% Similarity=0.410 Sum_probs=186.7
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhcc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSN 1080 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~ 1080 (1255)
+.+..+|+..+|. ...|+++|||++++||.||+.||||+||||.+.++.|+..|++|+|.+||.||+.+|++. -|-.
T Consensus 3 ~~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 3578899999995 356999999999999999999999999999999999999999999999999999999987 4677
Q ss_pred cEEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
|+|+||+|.+|.+ |+++||...-+..+.+... +-++..+.+.++.+ .+...-...|..||||||+|+-|||
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~------~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK------AERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhH------HHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHH
Confidence 9999999999987 9999997533322211111 12222233333332 3444444567799999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhh-hhcCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||..+|+.++||||.+++||.+-..||+.++.+. +|--|++.-|..... .-|||.+++.+|+|...|+|+|+.+++
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999999998765 466899999998754 559999999999999999999999874
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=353.03 Aligned_cols=201 Identities=25% Similarity=0.332 Sum_probs=170.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999953 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EccCCccCC-CchhhhcccCC---CCChH----HHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS---QFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~---~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+||++.+|. .|+++|+.... ....+ ++.+ +++..++.+... ....+||||||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~~~-----------~~~~~LSgGq~qrl 137 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQ------MLKKVGLEGAEK-----------RYIWQLSGGQRQRV 137 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHH------HHHHcCChhHhh-----------CChhhCCHHHHHHH
Confidence 999999887 59999996421 12222 2222 566666554332 23457999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEe--CCEEEEEcCh
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMS--DGKLVEYDEP 1228 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~~ 1228 (1255)
+||||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999999998863 37999999999999876 99999998 5999998764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.04 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=173.1
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH---Hhh
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY---DLR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~---~lR 1078 (1255)
++++|++++|+++. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 5699999999999999999999999999999999999999999999999999877653 468
Q ss_pred cccEEEccCCccCC-CchhhhcccCC----CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1079 SNLGIIPQDPTLFS-GSVRYNLDPLS----QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~-gTIr~Nl~~~~----~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+.++|+||+|.+|. .|+.+|+.+.. ..+.++..+ ...++++.+++.++....| .+||+||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~q 148 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE--RARAMLEAVGLGDHLDYYP-----------HNLSGGQKQ 148 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHcCChhhhhcCh-----------hhCCHHHHH
Confidence 89999999999998 69999997432 122222211 0112566666655544433 479999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhhcCEEEEEeCCEE
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKL 1222 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1222 (1255)
|++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999988753 7999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=351.78 Aligned_cols=228 Identities=21% Similarity=0.344 Sum_probs=185.3
Q ss_pred eEEEEEEEEEeCCC-------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH
Q 000845 1003 KVEIYDLQIRYRPN-------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~-------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~ 1075 (1255)
-|+++||+++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 35699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HhhcccEEEccCCc--cC-CCchhhhcccC-C---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccc-hhcCCC
Q 000845 1076 ---DLRSNLGIIPQDPT--LF-SGSVRYNLDPL-S---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDS-LVVQDG 1144 (1255)
Q Consensus 1076 ---~lR~~i~~vpQdp~--Lf-~gTIr~Nl~~~-~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt-~v~e~G 1144 (1255)
.+|+.++|+||++. ++ ..|+++|+... . ..+.+ .....+.+.+..+ |+++ ......
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~l~~~--gl~~~~~~~~~ 149 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----------ERLARASEMLRAV--DLDDSVLDKRP 149 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----------HHHHHHHHHHHHc--CCChhHhhCCC
Confidence 46889999999983 43 36899997421 1 11111 1111223334332 4542 345566
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
..||||||||++|||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999987653 7899999999999986 99999999999
Q ss_pred EEEEcChhHHhhcCChHHHHHHH
Q 000845 1222 LVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1222 ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
+++.|+++++... ++.|..-+.
T Consensus 230 i~~~g~~~~~~~~-~~~~~~~~~ 251 (268)
T PRK10419 230 IVETQPVGDKLTF-SSPAGRVLQ 251 (268)
T ss_pred EeeeCChhhccCC-CCHHHHHHH
Confidence 9999999999864 555554443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=345.28 Aligned_cols=204 Identities=27% Similarity=0.401 Sum_probs=175.6
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EccCCccCC-CchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||++.+|. .|+++|+... ....++++.+ +++..++.+..... ..+||||||||++|||
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~lar 137 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDE------VLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAI 137 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHH------HHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHH
Confidence 999999886 5999999632 1223445554 77777776554332 2479999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 138 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 138 ALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999999998764 47899999999999865 99999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=329.93 Aligned_cols=171 Identities=40% Similarity=0.725 Sum_probs=160.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+...+.+++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHcc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~ 1163 (1255)
+||+|.+|+.|++||+ ||+|||||++||||+++
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------------hCHHHHHHHHHHHHHhc
Confidence 9999999988888775 99999999999999999
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCE
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221 (1255)
Q Consensus 1164 ~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1221 (1255)
+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=347.67 Aligned_cols=212 Identities=23% Similarity=0.344 Sum_probs=169.0
Q ss_pred EEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCCEEEEcCEeCCCCChHHhh
Q 000845 1004 VEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE---PTGGKIIIDGLDITTIGLYDLR 1078 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~---~~~G~I~idG~di~~i~~~~lR 1078 (1255)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999755 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEccCCccCCC-chhhhcccCCC-CChHHHHhccCchhHHHhccHHH-HHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLRE-VIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~g-TIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
++++|+||++.+|.+ |+++|+.+... .......+ ........+ .+.. .+++........+||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~------~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl 152 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD------AIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRV 152 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccch------HHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHH
Confidence 899999999999988 99999974211 00000000 000000111 1111 1333333344568999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCc-hhhh-hcCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRI-ATVM-DCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl-~ti~-~~DrI~vl~~G~ive~G 1226 (1255)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||++ +.+. .||+|++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998764 478999999998 4654 59999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=367.34 Aligned_cols=212 Identities=24% Similarity=0.359 Sum_probs=177.9
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC----hHHhhcccEE
Q 000845 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG----LYDLRSNLGI 1083 (1255)
Q Consensus 1008 nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~----~~~lR~~i~~ 1083 (1255)
|++++|.. . .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999953 2 35 999999999999999999999999999999999999999999999986543 3356889999
Q ss_pred EccCCccCCC-chhhhcccCC-CCChH----HHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLS-QFTDQ----EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~-~~sd~----ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+||++.+|.+ |+++|+.+.. ....+ .+.+ +++..++.+.. .....+||||||||++|
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~------~l~~~gL~~~~-----------~~~~~~LSgGqkqRval 142 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFER------VIELLGIGHLL-----------GRLPGRLSGGEKQRVAI 142 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHH------HHHHcCChhHh-----------cCChhhCCHHHHHHHHH
Confidence 9999999976 9999997421 11111 1222 55555554433 33346799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 143 AraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred HHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999988653 7899999999999876 999999999999999999999987
Q ss_pred CChHHH
Q 000845 1235 QDSLFA 1240 (1255)
Q Consensus 1235 ~~~~f~ 1240 (1255)
+...|.
T Consensus 223 ~~~~~~ 228 (354)
T TIGR02142 223 PDLPWL 228 (354)
T ss_pred cCcccc
Confidence 665553
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=342.02 Aligned_cols=232 Identities=21% Similarity=0.385 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCC--CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-C----CCCEEEEcCEeCCCCChHH
Q 000845 1004 VEIYDLQIRYRPNA--PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE-P----TGGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~--~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~-~----~~G~I~idG~di~~i~~~~ 1076 (1255)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996432 369999999999999999999999999999999999998 3 6799999999999999875
Q ss_pred hh----cccEEEccCCcc-CC--Cchhhhcc----cCCCC-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1077 LR----SNLGIIPQDPTL-FS--GSVRYNLD----PLSQF-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1077 lR----~~i~~vpQdp~L-f~--gTIr~Nl~----~~~~~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
+| +.|++|||||.- |+ -||.+-+. ..... +.+|..+ ...+.|+.+++.+-- ..+..-.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~--~a~~~L~~Vgi~~~~--------~~~~~YP 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE--RAIELLELVGIPDPE--------RRLKSYP 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHcCCCCHH--------HHHhhCC
Confidence 43 479999999952 22 13333321 10111 1221111 012266677664321 1122234
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
.+||||||||+.||-|++.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+
T Consensus 152 helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~ 231 (316)
T COG0444 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231 (316)
T ss_pred cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcE
Confidence 5799999999999999999999999999999999999999999998876 48899999999999977 99999999999
Q ss_pred EEEEcChhHHhhcCChHHHHHHHH
Q 000845 1222 LVEYDEPKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1222 ive~G~~~eLl~~~~~~f~~l~~~ 1245 (1255)
|||.|+.++++.++.-.|.+.+-.
T Consensus 232 iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 232 IVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999999988888765543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=346.82 Aligned_cols=224 Identities=21% Similarity=0.330 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEe-----CCCCChHH-
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD-----ITTIGLYD- 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~d-----i~~i~~~~- 1076 (1255)
.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---hhcccEEEccCCcc---CCCchhhhccc----CCCCChHHHHhccCchhHHHhccHHHHHHhhhcCcc-chhcCCCC
Q 000845 1077 ---LRSNLGIIPQDPTL---FSGSVRYNLDP----LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD-SLVVQDGA 1145 (1255)
Q Consensus 1077 ---lR~~i~~vpQdp~L---f~gTIr~Nl~~----~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gld-t~v~e~G~ 1145 (1255)
+++.++|+||+|.+ +..|+.+|+.. .......+. ...+.++++.+ |++ +.......
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l--~l~~~~~~~~~~ 147 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----------RAAAHDWLEEV--EIDPTRIDDLPR 147 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----------HHHHHHHHHHc--CCChhhhhcCch
Confidence 34679999999852 33578888731 111000011 01123344433 332 34455667
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
.||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999987643 7899999999999986 999999999999
Q ss_pred EEEcChhHHhhcCChHHHH
Q 000845 1223 VEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~~~f~~ 1241 (1255)
++.|+++++..++...|.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 228 VESGLTDQVLDDPQHPYTQ 246 (253)
T ss_pred EEECCHHHHhcCCCCHHHH
Confidence 9999999998765444543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=345.75 Aligned_cols=208 Identities=25% Similarity=0.397 Sum_probs=178.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 4599999999999999999999999999999999999999999999987 35799
Q ss_pred EEccCCccCC---CchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1083 IIPQDPTLFS---GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1083 ~vpQdp~Lf~---gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
|+||+|.++. .|+++|+......+++++.+ +++.+++.+..... ...||||||||++|||
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~lar 133 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP------ALKRVQAGHLIDAP-----------MQKLSGGETQRVLLAR 133 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHH------HHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHH
Confidence 9999998765 38899875433345566665 88888887665432 2479999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 1236 (1255)
|++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.. .
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~ 210 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--H 210 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--C
Confidence 99999999999999999999999999999987643 7899999999999865 999999965 7999999999875 3
Q ss_pred hHHHHHH
Q 000845 1237 SLFAQLV 1243 (1255)
Q Consensus 1237 ~~f~~l~ 1243 (1255)
..|.+++
T Consensus 211 ~~~~~~~ 217 (251)
T PRK09544 211 PEFISMF 217 (251)
T ss_pred HHHHHHh
Confidence 4566655
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=330.18 Aligned_cols=172 Identities=33% Similarity=0.514 Sum_probs=158.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCC--hHHhhccc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG--LYDLRSNL 1081 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~--~~~lR~~i 1081 (1255)
|+++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++++ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999953 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+|+||+|.+|.+ |+++|+... ||||||||++||||
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------------CCHHHHHHHHHHHH
Confidence 999999998865 999987521 99999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999988654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=328.82 Aligned_cols=170 Identities=29% Similarity=0.546 Sum_probs=156.4
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998765 667889999
Q ss_pred EccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
+||+|.+|.+ |+++|+. ||||||||++||||++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------------cCHHHHHHHHHHHHHH
Confidence 9999998886 8888852 9999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
++|+|+||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+.. ||+|++|++|++
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999864 46899999999999885 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=304.94 Aligned_cols=199 Identities=26% Similarity=0.414 Sum_probs=171.5
Q ss_pred EeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccC
Q 000845 1012 RYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLF 1091 (1255)
Q Consensus 1012 ~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf 1091 (1255)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+.+|++|.+++.|.|++.++++.+|++++|+.|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46555667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccc-C---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCe
Q 000845 1092 SGSVRYNLDP-L---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167 (1255)
Q Consensus 1092 ~gTIr~Nl~~-~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~I 1167 (1255)
.+||.+|+-+ + +.-+|..... +.++++++.+.+ +..+..+||||||||++|+|-|---|+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~-----~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~I 154 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAAL-----DLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKI 154 (223)
T ss_pred ccchhhccccchHHhccCCChHHHH-----HHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCce
Confidence 9999999963 3 1223332211 145666554443 3334468999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchh-hhhcCEEEEEeCCEEEEE
Q 000845 1168 LVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIAT-VMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1168 LiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~t-i~~~DrI~vl~~G~ive~ 1225 (1255)
|+|||+||+||+.+.+.|.+.|.+++ ++..++.|||+.+. ++.+||++-+..|++-|.
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 99999999999999999999999988 46799999999998 788999999999986543
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=335.66 Aligned_cols=190 Identities=19% Similarity=0.277 Sum_probs=161.5
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCCEEEEcCEeCCCCChHHh
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE---PTGGKIIIDGLDITTIGLYDL 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~---~~~G~I~idG~di~~i~~~~l 1077 (1255)
.+.++||+|.|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999743 5679999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hcccEEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHH
Q 000845 1078 RSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1078 R~~i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
|++++|+||++.+|.+ |+++|+.... .+. .+. ....||+|||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~---------------~~~--------------~~~----~~~~LS~Ge~qrl~ 128 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFAL---------------RCK--------------GNE----FVRGISGGERKRVS 128 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhh---------------hhc--------------ccc----chhhCCHHHHHHHH
Confidence 8899999999988875 9999985310 000 122 23479999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEec-cCchhhh-hcCEEEEEeCCEEEEEc
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVA-HRIATVM-DCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~Ia-Hrl~ti~-~~DrI~vl~~G~ive~G 1226 (1255)
||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++ |+++.+. .||+|++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999998654 46766655 5556765 49999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=350.83 Aligned_cols=209 Identities=22% Similarity=0.337 Sum_probs=172.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 5899999999963 3469999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEccCCcc---CCCchhhhcccC--C------CC---ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1083 IIPQDPTL---FSGSVRYNLDPL--S------QF---TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1083 ~vpQdp~L---f~gTIr~Nl~~~--~------~~---sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
|+||+|.+ +..++++|+... . .. .++.+.+ +++..++.+.. |+. ..+||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~gl~~~~-------~~~----~~~LS 144 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTA------ALARVDMVEFR-------HRQ----IGELS 144 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHH------HHHHcCChhHh-------cCC----cccCC
Confidence 99999865 456889987531 0 00 1122223 66777765543 222 34699
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g 223 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 999999999999999999999999999999999999999998864 47899999999999865 8999777 89999999
Q ss_pred ChhHHhh
Q 000845 1227 EPKKLLR 1233 (1255)
Q Consensus 1227 ~~~eLl~ 1233 (1255)
+++++..
T Consensus 224 ~~~~~~~ 230 (272)
T PRK15056 224 PTETTFT 230 (272)
T ss_pred CHHhccC
Confidence 9999864
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=334.10 Aligned_cols=185 Identities=24% Similarity=0.333 Sum_probs=162.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCCEEEEcCEeCCCCChHHh-hcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEPTGGKIIIDGLDITTIGLYDL-RSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl--~~~~~G~I~idG~di~~i~~~~l-R~~ 1080 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876654 567
Q ss_pred cEEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
++|+||+|.+|++ |+++|+ .. ...+||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------------~~-----------~~~~LS~G~~qrv~lar 117 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------------RY-----------VNEGFSGGEKKRNEILQ 117 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------------hh-----------ccccCCHHHHHHHHHHH
Confidence 9999999998876 333332 00 01369999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhh--hcCEEEEEeCCEEEEEcChhHHh
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVM--DCNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~--~~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
|++++|+|+||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 118 al~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 118 LLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999999999988653 789999999999988 58999999999999999 55564
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=331.22 Aligned_cols=182 Identities=23% Similarity=0.408 Sum_probs=161.1
Q ss_pred eEEEEEEEEEeCCC----CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCCEEEEcCEeCCCCChHH
Q 000845 1003 KVEIYDLQIRYRPN----APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV--EPTGGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~----~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~--~~~~G~I~idG~di~~i~~~~ 1076 (1255)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999642 256999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhcccEEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHH
Q 000845 1077 LRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+|++++|+||++.+|.+ |+++|+.. . . ... .||||||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~---------~--------~-~~~---------------------~LS~G~~qrv 120 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMF---------A--------A-KLR---------------------GLSGGERKRV 120 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHH---------H--------H-Hhc---------------------cCCHHHHHHH
Confidence 78899999999998875 99998741 0 0 000 6999999999
Q ss_pred HHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCch-hhhh-cCEEEEEeCCEEEEEc
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIA-TVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~-ti~~-~DrI~vl~~G~ive~G 1226 (1255)
+||||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+.. ||+|++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998865 4789999999997 5654 9999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=339.42 Aligned_cols=199 Identities=26% Similarity=0.370 Sum_probs=165.8
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC----ChHHhhcc
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI----GLYDLRSN 1080 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i----~~~~lR~~ 1080 (1255)
++ ||+++|+. ..+ |+||+|++ |++||+|+||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 3 ~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 89999964 234 99999999 99999999999999999999999999999999999998643 23457889
Q ss_pred cEEEccCCccCC-CchhhhcccCCC-CCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1081 LGIIPQDPTLFS-GSVRYNLDPLSQ-FTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1081 i~~vpQdp~Lf~-gTIr~Nl~~~~~-~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|+||++.+|. .|+++|+..... ..+ +++.+ +++..++.+ ........||||||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~------~l~~~~l~~-----------~~~~~~~~LS~G~~qr 139 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDE------LLDLLGLDH-----------LLNRYPAQLSGGEKQR 139 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHH------HHHHcCCHh-----------HhhcCcccCCHHHHHH
Confidence 999999999986 499999974221 111 12222 455555443 3334456899999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999988643 7899999999999965 9999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=329.45 Aligned_cols=181 Identities=21% Similarity=0.321 Sum_probs=159.9
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCCEEEEcCEeCCCCChHHhh
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV--EPTGGKIIIDGLDITTIGLYDLR 1078 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~--~~~~G~I~idG~di~~i~~~~lR 1078 (1255)
.|+++|++++|+++ .+++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999885 5678
Q ss_pred cccEEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1079 ~~i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
++++|++|+|.+|.+ |+++|+... . .++ +||||||||++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~------~~~------------------------~LSgGe~qrv~l 119 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------A------LLR------------------------GLSVEQRKRLTI 119 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------H------HHh------------------------cCCHHHhHHHHH
Confidence 899999999988875 999998520 0 110 699999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchh-h-hhcCEEEEEeC-CEEEEEc
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIAT-V-MDCNMVLSMSD-GKLVEYD 1226 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~-G~ive~G 1226 (1255)
|||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999998864 47899999999984 4 55999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=328.13 Aligned_cols=224 Identities=25% Similarity=0.382 Sum_probs=192.5
Q ss_pred eEEEEEEEEEeCCC----------------------CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 000845 1003 KVEIYDLQIRYRPN----------------------APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~----------------------~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G 1060 (1255)
.|+++||+.-+..+ ...-++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57888888776432 12358999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCChHHhh----cccEEEccCCccCCC-chhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhh
Q 000845 1061 KIIIDGLDITTIGLYDLR----SNLGIIPQDPTLFSG-SVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEK 1132 (1255)
Q Consensus 1061 ~I~idG~di~~i~~~~lR----~~i~~vpQdp~Lf~g-TIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~l 1132 (1255)
+|++||.|+..++..+|| +++++|+|.--||+- ||-+|..+.-+ .+.+|-.+ ...++|+.+||.+|-.+.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~--~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREE--RALEALELVGLEGYADKY 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHH--HHHHHHHHcCchhhhhcC
Confidence 999999999999988874 579999999999875 99999976532 23333222 123489999999998877
Q ss_pred hcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh
Q 000845 1133 KEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD 1210 (1255)
Q Consensus 1133 p~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~ 1210 (1255)
|+ .||||+|||+.|||||..+|+||++|||.|+|||--...+|+-|.++- -++|+++|||+|+....
T Consensus 162 p~-----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlr 230 (386)
T COG4175 162 PN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALR 230 (386)
T ss_pred cc-----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHh
Confidence 74 689999999999999999999999999999999999999999887654 36899999999998765
Q ss_pred -cCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1211 -CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1211 -~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
-|||..|++|+|+..|+|+|.+.+|..-|
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 89999999999999999999999886544
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=328.54 Aligned_cols=172 Identities=27% Similarity=0.469 Sum_probs=155.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
.++++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988874 4568899
Q ss_pred EEEccCC----ccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDP----TLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp----~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+|+||+| .++..|+++|+... .. ||+|||||++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~-----------------~~-------------------------LS~G~~qrl~l 115 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALS-----------------SL-------------------------LSGGNQQKVVL 115 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHH-----------------hh-------------------------cCHHHHHHHHH
Confidence 9999995 34456999987521 00 99999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999998864 47899999999999987 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=327.16 Aligned_cols=177 Identities=30% Similarity=0.500 Sum_probs=158.9
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999963 4699999999999999999999999999999999999999999999999999988888888999999
Q ss_pred ccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1085 pQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|| +++.+++.++... ...+||||||||++||||++++
T Consensus 79 ~q--------------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~ 115 (180)
T cd03214 79 PQ--------------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQE 115 (180)
T ss_pred HH--------------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 99 2455666655432 2357999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 116 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999988654 7899999999999855 9999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=324.79 Aligned_cols=217 Identities=24% Similarity=0.409 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i~ 1082 (1255)
++.++++.+|. .-.+++||||++++||++||+|||||||||+++++.|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FG--Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFG--GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecC--CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 57899999994 3469999999999999999999999999999999999999999999999999999998884 66799
Q ss_pred EEccCCccCCC-chhhhcccCCC-------------C--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCC
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ-------------F--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGAN 1146 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~-------------~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1146 (1255)
--+|.+-+|++ |+-||+..... + .+++..+ ...+.|+.+ ||+..-.+...+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v-----------gL~~~a~~~A~~ 149 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV-----------GLGELADRPAGN 149 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc-----------CCchhhcchhhc
Confidence 99999999987 99999863211 1 1222222 111234444 444444555568
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEE
Q 000845 1147 WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLV 1223 (1255)
Q Consensus 1147 LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1223 (1255)
||+||+.||-|||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-||++.+++ ||||+||+.|+++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999999999999998874 4899999999999988 9999999999999
Q ss_pred EEcChhHHhhcC
Q 000845 1224 EYDEPKKLLRRQ 1235 (1255)
Q Consensus 1224 e~G~~~eLl~~~ 1235 (1255)
.+|+|+|..++|
T Consensus 230 AeG~P~eV~~dp 241 (250)
T COG0411 230 AEGTPEEVRNNP 241 (250)
T ss_pred ccCCHHHHhcCH
Confidence 999999998875
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=320.69 Aligned_cols=164 Identities=26% Similarity=0.375 Sum_probs=149.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHcc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~ 1163 (1255)
+||+|.++++|+++|+... ....||||||||++||||+++
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998521 135799999999999999999
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeCCE
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGK 1221 (1255)
Q Consensus 1164 ~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1221 (1255)
+|+++||||||++||+++.+.+.+.+++. ++|+|++||+++....||+|++|++|-
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999999999876 689999999999877799999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=344.19 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=174.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCCEEEEcCEeCCCCChHHhhc-
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEPTGGKIIIDGLDITTIGLYDLRS- 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl--~~~~~G~I~idG~di~~i~~~~lR~- 1079 (1255)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEccCCccCCC-chhhhcccCCC----C------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC-CC
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQ----F------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA-NW 1147 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~~~----~------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~-~L 1147 (1255)
.++++||+|.+|++ |+++|+..... . ...+..+ ...++++.+++.+ +....... .|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~----------~~~~~~~~~~L 152 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLE--IINEKLKLVGMDP----------SFLSRNVNEGF 152 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHH--HHHHHHHHcCCch----------hhhccccccCC
Confidence 58999999999986 78898753210 0 0001100 0012455554431 11222222 59
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh--cCEEEEEeCCEEEE
Q 000845 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD--CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1148 SgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive 1224 (1255)
|||||||++||||++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999998865 47899999999999875 89999999999999
Q ss_pred EcChhHH
Q 000845 1225 YDEPKKL 1231 (1255)
Q Consensus 1225 ~G~~~eL 1231 (1255)
.|+++++
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=336.01 Aligned_cols=193 Identities=23% Similarity=0.348 Sum_probs=161.5
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh----HHhhccc
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL----YDLRSNL 1081 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~----~~lR~~i 1081 (1255)
++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.+++.++. ...|+.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999963 469999999999999999999999999999999999999999999999999775542 2457889
Q ss_pred EEEccCCccCC-CchhhhcccCC---CCC----hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS---QFT----DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~---~~s----d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+|++|+|.+|. .|+++|+.... ... ++++.+ +++..++.+.. .....+|||||||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~-----------~~~~~~lS~G~~q 141 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE------ALEKVGLNLKL-----------KQKIYELSGGEQQ 141 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHcCchhhh-----------cCChhhCCHHHHH
Confidence 99999999997 69999997421 111 122333 56666654432 2233579999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEE
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSM 1217 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl 1217 (1255)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999999999998864 378999999999988779999885
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=340.84 Aligned_cols=209 Identities=22% Similarity=0.313 Sum_probs=172.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56778775 27999999999999999999999999999999999986 499999999999988888888899999
Q ss_pred ccCCc-cCCCchhhhcccCCCC--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1085 PQDPT-LFSGSVRYNLDPLSQF--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1085 pQdp~-Lf~gTIr~Nl~~~~~~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
||++. .+..|+++|+...... ..++..+ ...++++..++.+. .......||||||||++||||+
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVAS--ALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHH--HHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 99985 4567999999754221 1111111 00115555555432 2334467999999999999999
Q ss_pred cc-------CCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1162 LR-------RRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1162 L~-------~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
++ +|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 97 679999999999999999999999998765 47899999999998765 9999999999999999999886
Q ss_pred h
Q 000845 1233 R 1233 (1255)
Q Consensus 1233 ~ 1233 (1255)
.
T Consensus 222 ~ 222 (248)
T PRK03695 222 T 222 (248)
T ss_pred C
Confidence 5
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=357.99 Aligned_cols=231 Identities=22% Similarity=0.374 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCCCC--ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC----CCEEEEcCEeCCCCChHH
Q 000845 1003 KVEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT----GGKIIIDGLDITTIGLYD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~--~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~----~G~I~idG~di~~i~~~~ 1076 (1255)
-++++|++..|..... .+++||||+|.+||.+||||.|||||||++++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999964432 5999999999999999999999999999999999999987 899999999999888766
Q ss_pred hh----cccEEEccCCc-cCCC--chhhhcc----cCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCC
Q 000845 1077 LR----SNLGIIPQDPT-LFSG--SVRYNLD----PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA 1145 (1255)
Q Consensus 1077 lR----~~i~~vpQdp~-Lf~g--TIr~Nl~----~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1145 (1255)
.| ++|++|||+|. .|+- ||.+-|. .....+-+|..+ ...+.++.+++.+-... ..-..
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~--~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK--RAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHH--HHHHHHHHcCCCChhhh---------ccCCc
Confidence 54 57999999996 4443 5544442 111111111111 01125666666443322 22346
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1146 NWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
.||||||||+.||+||..+|++||+||||.+||+.+.+.|.+.|++.. .+.++|+|||++..+.+ ||||+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 899999999999999999999999999999999999999999999876 57899999999999987 999999999999
Q ss_pred EEEcChhHHhhcCChHHHHHHH
Q 000845 1223 VEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
||.|+++++++++.-.|.+.+-
T Consensus 234 VE~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 234 VETGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred EEecCHHHHHhccCCcccHHHH
Confidence 9999999999998877766553
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=380.27 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=147.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh------ccCC----C-----------CCCE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALF------RLVE----P-----------TGGK 1061 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~------rl~~----~-----------~~G~ 1061 (1255)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588999862 2599999999999999999999999999998332 1111 1 1123
Q ss_pred EEEcCEeCCCCCh----------HHhhcccEEEcc------CCccCC--------------CchhhhcccCC--------
Q 000845 1062 IIIDGLDITTIGL----------YDLRSNLGIIPQ------DPTLFS--------------GSVRYNLDPLS-------- 1103 (1255)
Q Consensus 1062 I~idG~di~~i~~----------~~lR~~i~~vpQ------dp~Lf~--------------gTIr~Nl~~~~-------- 1103 (1255)
|.||-.+|..-+. +.+|..++=.|+ .+-.|+ |.+.-++.+..
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 6666655543221 235555555444 223333 11221111110
Q ss_pred ----CCChHHHHhccCc----hhHHHh--ccHHHHHHhhh-----------cCccc-hhcCCCCCCChhHHHHHHHHHHH
Q 000845 1104 ----QFTDQEIWEVTIP----SQVLEK--CQLREVIQEKK-----------EGLDS-LVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1104 ----~~sd~ei~~~~~~----~~al~~--~~l~~~i~~lp-----------~gldt-~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
.+.++ +.++... .++++. ....+|+..++ -||+. .++.....|||||+||++|||+|
T Consensus 765 C~G~R~~~e-~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL 843 (924)
T TIGR00630 765 CKGKRYNRE-TLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 843 (924)
T ss_pred cCCceeChH-HHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHH
Confidence 11111 1111000 001100 01112222221 25654 36777789999999999999999
Q ss_pred cc---CCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEE------eCCEEEEEcChhHH
Q 000845 1162 LR---RRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSM------SDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1162 L~---~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eL 1231 (1255)
++ +|+++||||||++||+.+.+.+.+.|++.. ++.|+|+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 844 ~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 844 SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 97 589999999999999999999999998875 478999999999999889999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=338.70 Aligned_cols=206 Identities=21% Similarity=0.344 Sum_probs=167.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC----CCCEEEEcCEeCCCCChHHhhcccEEEccCCc-cCC--
Q 000845 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP----TGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT-LFS-- 1092 (1255)
Q Consensus 1020 vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~----~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~-Lf~-- 1092 (1255)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ...++.++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 223468999999995 343
Q ss_pred Cchhhhccc----CCCCC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCC
Q 000845 1093 GSVRYNLDP----LSQFT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR 1165 (1255)
Q Consensus 1093 gTIr~Nl~~----~~~~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~ 1165 (1255)
-|+.+|+.. .+... ++++.+ +++.+++.+. ++.......+||||||||++||||++++|
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p 144 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILE------ALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEP 144 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHH------HHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 488888742 11111 122333 5555555311 12334445689999999999999999999
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCChHHHH
Q 000845 1166 QILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1166 ~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~f~~ 1241 (1255)
+||||||||++||+.+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 145 ~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 145 PFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999999999988653 7899999999999975 9999999999999999999998765555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=352.95 Aligned_cols=222 Identities=22% Similarity=0.292 Sum_probs=183.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhcccccccCcceEEEEeeEEEecC
Q 000845 377 IPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEA 456 (1255)
Q Consensus 377 ~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~ 456 (1255)
++++|+.+|+++++|+.+..|+..+|..... ..|+..|+..++.+...... ..+..+.|+++|++++|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE---DFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC---CCCcCceEEEEeeEEEecC
Confidence 5689999999999999999999888765433 56999999887654321111 1124568999999999974
Q ss_pred CCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCC-----CCCc------cc--------------------
Q 000845 457 DLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR-----LQGM------DL-------------------- 505 (1255)
Q Consensus 457 ~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~-----~~G~------Di-------------------- 505 (1255)
. ..++|+|+||+|++||+++|+|++|||||||+++|+|++++ .+|. |+
T Consensus 93 ~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 R-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred C-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 3 34799999999999999999999999999999999999863 4551 10
Q ss_pred ------------C-------------------------CCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 506 ------------K-------------------------MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 506 ------------~-------------------------~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
. .++.+-.+.++++|.+|||||||||+||||+|++|+|+||||
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE 251 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE 251 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 011111346789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCEEEEecChhHHhh
Q 000845 549 PFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPA-FDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||||||+++.++ +.+++..+.+++|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 252 Pts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 252 PTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred CcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999877 57788887788999999999999887 89999999999999999999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=338.52 Aligned_cols=215 Identities=22% Similarity=0.330 Sum_probs=167.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCCEEEEcCEeCCCCChHHhh-cc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV--EPTGGKIIIDGLDITTIGLYDLR-SN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~--~~~~G~I~idG~di~~i~~~~lR-~~ 1080 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999963 45999999999999999999999999999999999994 69999999999999888776654 57
Q ss_pred cEEEccCCccCCC-chhhhcccC-CC---CChHHHHhccCchhHHHhccHHHHHHh------hhcCccchhcCCCCCCCh
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPL-SQ---FTDQEIWEVTIPSQVLEKCQLREVIQE------KKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~-~~---~sd~ei~~~~~~~~al~~~~l~~~i~~------lp~gldt~v~e~G~~LSg 1149 (1255)
++|++|+|.++.. |..+++... .. ....+ .++..++.+.+.. +|+++.+... ..+|||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~ 148 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---------PLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSG 148 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---------cchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCH
Confidence 9999999987764 444433210 00 00000 1111111122211 2222222111 136999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh--cCEEEEEeCCEEEEEc
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD--CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G 1226 (1255)
|||||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999987654 6899999999999987 7999999999999999
Q ss_pred ChhHH
Q 000845 1227 EPKKL 1231 (1255)
Q Consensus 1227 ~~~eL 1231 (1255)
++++.
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98854
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=386.27 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=90.2
Q ss_pred Cccch-hcCCCCCCChhHHHHHHHHHHHc---cCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhh
Q 000845 1135 GLDSL-VVQDGANWSMGQRQLIGLGRVVL---RRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVM 1209 (1255)
Q Consensus 1135 gldt~-v~e~G~~LSgGQrQrl~lARAlL---~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~ 1209 (1255)
|++.. .+....+||||||||++|||||+ ++|++|||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 66554 56777889999999999999998 5999999999999999999999999998864 4789999999999997
Q ss_pred hcCEEEEEe------CCEEEEEcChhHHhhc
Q 000845 1210 DCNMVLSMS------DGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1210 ~~DrI~vl~------~G~ive~G~~~eLl~~ 1234 (1255)
.||+|++|+ +|++++.|+|+++...
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence 799999996 7999999999999864
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.48 Aligned_cols=194 Identities=24% Similarity=0.339 Sum_probs=165.8
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999953 46999999999999999999999999999999999999999999999999987643 467889999
Q ss_pred EccCCccC-CCchhhhcccCCC-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1084 IPQDPTLF-SGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1084 vpQdp~Lf-~gTIr~Nl~~~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
+||++.++ ..|+++|+..... ..++++.+ +++..++.++.. +. ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~~----~~~LS~G~~qrl~laral 140 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEE------ALARVGLNGFED-------RP----VAQLSAGQQRRVALARLL 140 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHH------HHHHcCChhhhc-------Cc----hhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999975432 34445544 778888765432 22 247999999999999999
Q ss_pred ccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEE
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSM 1217 (1255)
Q Consensus 1162 L~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl 1217 (1255)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+...+.. ||+++++
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999998754 47899999998887655 8999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=335.55 Aligned_cols=194 Identities=25% Similarity=0.407 Sum_probs=160.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCC-Cchhhhc
Q 000845 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFS-GSVRYNL 1099 (1255)
Q Consensus 1021 L~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~-gTIr~Nl 1099 (1255)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999988 5999998
Q ss_pred ccC-----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCC
Q 000845 1100 DPL-----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174 (1255)
Q Consensus 1100 ~~~-----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~T 1174 (1255)
... ...++++..+ ...++++..++.+... .....||||||||++|||||+++|++|||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA--IVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred HHHHHhcccCCCHHHHHH--HHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 642 1222222111 0012556665544332 233579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1175 ASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1175 S~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 143 ~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999999999998764 37899999999999876 9999999999999999877663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=312.78 Aligned_cols=159 Identities=29% Similarity=0.522 Sum_probs=147.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH-HhhcccE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY-DLRSNLG 1082 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~-~lR~~i~ 1082 (1255)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999963 3699999999999999999999999999999999999999999999999999887754 4677899
Q ss_pred EEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1083 IIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1083 ~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
|+|| ||+|||||++||||++
T Consensus 79 ~~~q------------------------------------------------------------LS~G~~qrl~laral~ 98 (163)
T cd03216 79 MVYQ------------------------------------------------------------LSVGERQMVEIARALA 98 (163)
T ss_pred EEEe------------------------------------------------------------cCHHHHHHHHHHHHHh
Confidence 9998 9999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
++|++|+|||||++||+++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998764 47899999999998876 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=336.50 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=159.3
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc-cCCccC-CCc
Q 000845 1017 APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP-QDPTLF-SGS 1094 (1255)
Q Consensus 1017 ~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp-Qdp~Lf-~gT 1094 (1255)
..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++|+| |++.+| ..|
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCc
Confidence 34699999999999999999999999999999999999999999999999987653 346788999997 667776 469
Q ss_pred hhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEe
Q 000845 1095 VRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLD 1171 (1255)
Q Consensus 1095 Ir~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLD 1171 (1255)
+++|+.... ..+.++..+. ..++++..++.+. +|+.+ ..||||||||++||||++.+|++||||
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKR--LDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986321 2223332210 0114444444332 23333 469999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1172 EATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1172 E~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
|||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 179 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 179 EPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999998643 6899999999999876 8999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=323.94 Aligned_cols=197 Identities=25% Similarity=0.417 Sum_probs=170.6
Q ss_pred eEEEEEEEEEeCCCC-------CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChH
Q 000845 1003 KVEIYDLQIRYRPNA-------PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~-------~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~ 1075 (1255)
-++++|++..|+... -.+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 25899999999999999999999999999999999999999999999999987766
Q ss_pred HhhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHH-HHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1076 DLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLRE-VIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1076 ~lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
.....+++.+ .|+.+|+.+ +..+.| ..||||||||
T Consensus 82 ---------------------------~~~~~~~v~e------lL~~Vgl~~~~~~ryP-----------helSGGQrQR 117 (268)
T COG4608 82 ---------------------------KEERRERVLE------LLEKVGLPEEFLYRYP-----------HELSGGQRQR 117 (268)
T ss_pred ---------------------------hhHHHHHHHH------HHHHhCCCHHHhhcCC-----------cccCchhhhh
Confidence 1112345655 888998765 444443 4699999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
++|||||.-+|+++++|||||+||.-.++.|.+.+.+.. .+-|.++|||+++.++. ||||.||..|+|||.|+.+++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence 999999999999999999999999999999999887654 37899999999999998 999999999999999999999
Q ss_pred hhcCChHHHHHHHH
Q 000845 1232 LRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1232 l~~~~~~f~~l~~~ 1245 (1255)
.+++.-.|-+.+-+
T Consensus 198 ~~~p~HpYTk~Ll~ 211 (268)
T COG4608 198 FSNPLHPYTKALLS 211 (268)
T ss_pred hhCCCCHHHHHHHH
Confidence 99988888765544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=370.21 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhh-ccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLR-SNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR-~~i 1081 (1255)
.|+++|++++|.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999953 4699999999999999999999999999999999999999999999999999887776654 569
Q ss_pred EEEccCCccCCC-chhhhcccCCCCC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQFT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+|+||++.+|.. |+++|+.+..... ++.+.+ +++..++.+. ++. ...+||||||||++|
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------~l~~~~l~~~-------~~~----~~~~LSgG~~qrv~l 151 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ------LLAALGCQLD-------LDS----SAGSLEVADRQIVEI 151 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHH------HHHHcCCCcc-------ccC----ChhhCCHHHHHHHHH
Confidence 999999998876 9999997532211 122222 5555555322 222 335799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999999999998764 47899999999999876 99999999999999999998764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=326.55 Aligned_cols=194 Identities=23% Similarity=0.338 Sum_probs=165.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999953 46999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EccCCccCC-CchhhhcccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
++|++.+++ .|+++|+..... ..++++.+ +++..++.++... ....||||||||++||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la 141 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWE------ALAQVGLAGFEDV-----------PVRQLSAGQQRRVALA 141 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHH------HHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHH
Confidence 999998886 599999964321 22334444 7888887654332 2357999999999999
Q ss_pred HHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhc-CEEEEE
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDC-NMVLSM 1217 (1255)
Q Consensus 1159 RAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl 1217 (1255)
||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999998764 478999999999999765 778776
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=323.43 Aligned_cols=476 Identities=18% Similarity=0.188 Sum_probs=306.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cchh---HHHHhchhhHhhhHhHHHH
Q 000845 726 VIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTP-VGRI---LSRVSSDLSIIDLDLSIKS 801 (1255)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~~~-~G~i---l~r~s~D~~~id~~l~~~~ 801 (1255)
+..|+++..+.+.+..+..+...-..++...++-..+.++-++. ..||.-+. .++| =.|+++|++..-..+....
T Consensus 125 ~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~-~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~ 203 (659)
T KOG0060|consen 125 LFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKG-FTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLY 203 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhcc-ceEEEecccccccCChHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333332 23333322 2333 3588999887666555444
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHHhCc
Q 000845 802 TIAVGTTMAVISTFVVLGA-LTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQN 880 (1255)
Q Consensus 802 ~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~ 880 (1255)
..++...+.++.-....+. ..|+....+...+++...+.+..++..-++.-.+....+...-.-++...+.+.|--|+.
T Consensus 204 s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g 283 (659)
T KOG0060|consen 204 SNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRG 283 (659)
T ss_pred HhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhcc
Confidence 4444333333322222222 233333333333333344455555554444444444455554555566678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh--ccCcccHHHHHHHH----HHHHHH
Q 000845 881 EERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCT---TLL--HKGHKGAGYTGMAL----SFGLSL 951 (1255)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~g~~l----~~~~~~ 951 (1255)
+........+..+..............|+...-+.+..+...+..++. ++. ..+.+++....-.+ .+.+.+
T Consensus 284 ~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~L 363 (659)
T KOG0060|consen 284 GQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYL 363 (659)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHH
Confidence 766655555555555544455556677777766665532221111110 000 12334444332222 223344
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC-----------------Ccccc-cCCCCCCCCCCCceEEEEEEEEEe
Q 000845 952 NDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSE-----------------APELV-QKNSPAPDWPPTGKVEIYDLQIRY 1013 (1255)
Q Consensus 952 ~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e-----------------~~~~~-~~~~~~~~~p~~g~I~~~nvs~~Y 1013 (1255)
.+.+..++.....+.....-..|+.++++.-.+ ..... ..+..+..||....|+|++|++.-
T Consensus 364 i~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~t 443 (659)
T KOG0060|consen 364 ISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLST 443 (659)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecC
Confidence 555555555555555555667888877642110 00000 011123457778899999999998
Q ss_pred CCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC
Q 000845 1014 RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG 1093 (1255)
Q Consensus 1014 ~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g 1093 (1255)
|.+++...+|+||+|+.|+.+-|+||||||||||++.|.|+.+..+|++.--...- -+.+-|+||.|+.=.|
T Consensus 444 Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQrPYmt~G 515 (659)
T KOG0060|consen 444 PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQRPYMTLG 515 (659)
T ss_pred CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCCCCcccc
Confidence 76677778889999999999999999999999999999999999999987532110 1458999999999999
Q ss_pred chhhhcc-cC-------CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhc-CCCCCCChhHHHHHHHHHHHccC
Q 000845 1094 SVRYNLD-PL-------SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVV-QDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1094 TIr~Nl~-~~-------~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~-e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|+|+.+- |. ...+|++|.+ .|+.++|.+.+.. .+|+|+++. +-...||+||+||||+||.++.+
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r------~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILR------ILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHH------HHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 9999985 31 1368899988 9999999887765 489997664 45678999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEEeC
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD 1219 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1219 (1255)
|++-+|||+|||+|.+.|..+.+.+++ .+-|.|.|.||-+.-+.-|.++-|+.
T Consensus 589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999999998 58999999999999999999999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=371.67 Aligned_cols=216 Identities=21% Similarity=0.363 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCCEEEEcCEeCCCCChHH-hhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP--TGGKIIIDGLDITTIGLYD-LRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~--~~G~I~idG~di~~i~~~~-lR~ 1079 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 4699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ccEEEccCCccCCC-chhhhcccCCC------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQ------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~~~------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
+++||||+|.+|.. |+++|+.+... .+.++..+ ...++++..++ +........+||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l-----------~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL--RAQKLLAQLKL-----------DINPATPVGNLGLGQQ 149 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH--HHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence 89999999998875 99999974321 11122111 00113444433 2222233457999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
||++|||||+.+|+||||||||++||+++...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999999999999999998864 47899999999999876 99999999999999999988
Q ss_pred Hhh
Q 000845 1231 LLR 1233 (1255)
Q Consensus 1231 Ll~ 1233 (1255)
+..
T Consensus 230 ~~~ 232 (506)
T PRK13549 230 MTE 232 (506)
T ss_pred CCH
Confidence 743
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=297.77 Aligned_cols=220 Identities=26% Similarity=0.424 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCC----------
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI---------- 1072 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i---------- 1072 (1255)
.++++|+..+|... .|||+||++.++|+.|.|+|.|||||||+++++.=+-.|+.|+|.++|..|.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 68899999999654 499999999999999999999999999999999999999999999999876522
Q ss_pred ---ChHHhhcccEEEccCCccCCC-chhhhcc--cCC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1073 ---GLYDLRSNLGIIPQDPTLFSG-SVRYNLD--PLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1073 ---~~~~lR~~i~~vpQdp~Lf~g-TIr~Nl~--~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
..+.+|+++++|+|.-.|.+- |+-||.. |.. ..+..|..+ ..+..|.++|+.+--+.-|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e--~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE--RAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHH--HHHHHHHHhCchhhhhcCc-----------
Confidence 145689999999999999875 9999984 322 123333222 1123577777776655443
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
..|||||+||.+|||||.-+|+++++|||||+|||+---.+.+.++++. .|+|+++|||.+.+.++ +..|+.+.+|+|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 5799999999999999999999999999999999999999999998865 58999999999999998 799999999999
Q ss_pred EEEcChhHHhhcCCh
Q 000845 1223 VEYDEPKKLLRRQDS 1237 (1255)
Q Consensus 1223 ve~G~~~eLl~~~~~ 1237 (1255)
-|+|+|+++..+|.|
T Consensus 231 EE~G~P~qvf~nP~S 245 (256)
T COG4598 231 EEEGPPEQVFGNPQS 245 (256)
T ss_pred cccCChHHHhcCCCC
Confidence 999999999999876
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=372.38 Aligned_cols=216 Identities=21% Similarity=0.339 Sum_probs=178.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh-hccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL-RSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l-R~~i 1081 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988776553 5679
Q ss_pred EEEccCCccCCC-chhhhcccCCC-------C---ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ-------F---TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~-------~---sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
+||||++.+|.. |+++|+..... . +.++..+ ...++++.+++.+ -.+. ...+||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~-------~~~~----~~~~LSgG 149 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV--RAAMMLLRVGLKV-------DLDE----KVANLSIS 149 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH--HHHHHHHHcCCCC-------Cccc----chhhCCHH
Confidence 999999998875 99999964210 0 1111111 0011344444321 1233 33579999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999998864 47899999999999976 999999999999999999
Q ss_pred hHHhh
Q 000845 1229 KKLLR 1233 (1255)
Q Consensus 1229 ~eLl~ 1233 (1255)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=384.49 Aligned_cols=220 Identities=23% Similarity=0.300 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
..|+++|++++|+++...+++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. .....|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996444579999999999999999999999999999999999999999999999999975 566789999
Q ss_pred EEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+++||++.+|+. |++|||.++. ..+.++..+ ...+.++.++|.+. ......+||||||||++|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~--~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL--EMEAMLEDTGLHHK-----------RNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 999999999975 9999997532 122222211 00125666655433 233345799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++.+|.++.
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999998778999999999999976 9999999999999999999998753
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=369.80 Aligned_cols=216 Identities=20% Similarity=0.375 Sum_probs=177.0
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
-|+++|++++|.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999997665544 36789
Q ss_pred EEEccCCccCCC-chhhhcccCCC-------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ-------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~-------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+|+||+|.+|.. |+++|+.+... .+.++..+ ...++++..++.+ -+|.. ..+|||||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~-------~~~~~----~~~LSgG~~q 148 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA--EADKLLARLNLRF-------SSDKL----VGELSIGEQQ 148 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH--HHHHHHHHcCCCC-------CccCc----hhhCCHHHHH
Confidence 999999988875 99999975311 11121111 0011344444322 12333 3579999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999998763 46899999999999876 899999999999999998876
Q ss_pred hh
Q 000845 1232 LR 1233 (1255)
Q Consensus 1232 l~ 1233 (1255)
..
T Consensus 229 ~~ 230 (501)
T PRK10762 229 TE 230 (501)
T ss_pred CH
Confidence 43
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=300.80 Aligned_cols=213 Identities=22% Similarity=0.381 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+.+|++++- .++.+|+++||+++|||.+||+||||||||||+++|.|.+.|++|++.++|.++++.+..++-++-++
T Consensus 2 i~a~nls~~~--~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSL--AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEe--ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6788998776 34569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCcc-CCCchhhhcc----cCCC--C--ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1084 IPQDPTL-FSGSVRYNLD----PLSQ--F--TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1084 vpQdp~L-f~gTIr~Nl~----~~~~--~--sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
.||+..| |+=|++|-+. |.+. - .|++|.+ +++.++++..+-... | ..||||||||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~-----~ala~~d~~~la~R~---y--------~~LSGGEqQR 143 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-----QALAATDLSGLAGRD---Y--------RTLSGGEQQR 143 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHH-----HHHHHcChhhhhccc---h--------hhcCchHHHH
Confidence 9999987 8889999875 3321 1 2344544 488888887664321 1 3699999999
Q ss_pred HHHHHHHccC------CCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhh-hcCEEEEEeCCEEEEEc
Q 000845 1155 IGLGRVVLRR------RQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVM-DCNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1155 l~lARAlL~~------~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 1226 (1255)
+.+||.|.+- +++|+||||||+||......+.+..|+.. .++.|++|=|+|+... .||||++|.+||++..|
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecC
Confidence 9999999863 46999999999999999999999998865 5789999999999875 59999999999999999
Q ss_pred ChhHHhhc
Q 000845 1227 EPKKLLRR 1234 (1255)
Q Consensus 1227 ~~~eLl~~ 1234 (1255)
+|++.+..
T Consensus 224 ~p~~vlt~ 231 (259)
T COG4559 224 SPQDVLTD 231 (259)
T ss_pred CHHHhcCH
Confidence 99999875
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=375.76 Aligned_cols=227 Identities=21% Similarity=0.353 Sum_probs=179.5
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC----------
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT---------- 1070 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~---------- 1070 (1255)
-|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999532 236999999999999999999999999999999999999999999999998552
Q ss_pred CCChH---Hhh-cccEEEccCC--ccCC-CchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccch
Q 000845 1071 TIGLY---DLR-SNLGIIPQDP--TLFS-GSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSL 1139 (1255)
Q Consensus 1071 ~i~~~---~lR-~~i~~vpQdp--~Lf~-gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~ 1139 (1255)
+.+.. .+| ++|+||+|+| .++. -|+++|+... ...+.++..+ ...++++.+++.+. +..
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~gL~~~--------~~~ 161 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV--EAKRMLDQVRIPEA--------QTI 161 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHCCCCCh--------hhH
Confidence 22322 334 5799999999 5776 4999999631 1122222211 00125666655211 111
Q ss_pred hcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEeccCchhhhh-cCEEEE
Q 000845 1140 VVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-A-NCTVITVAHRIATVMD-CNMVLS 1216 (1255)
Q Consensus 1140 v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~v 1216 (1255)
......+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 223345799999999999999999999999999999999999999999999875 2 7899999999999876 999999
Q ss_pred EeCCEEEEEcChhHHhhcCChHH
Q 000845 1217 MSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1217 l~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
|++|+|++.|++++++..+...|
T Consensus 242 l~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred eeCCeecccCCHHHhhcCCCChh
Confidence 99999999999999986544333
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=324.48 Aligned_cols=195 Identities=24% Similarity=0.266 Sum_probs=163.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-++++|++++|+. +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999953 4599999999999999999999999999999999999999999999999998752 3466799
Q ss_pred EEccCCccCCC-chhhhcccCC---CCCh-HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS---QFTD-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~---~~sd-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
|+||+|.+|.+ |+++|+.... .... +.+.+ +++..++.+. +++.+ .+||||||||++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~------~l~~~~l~~~-------~~~~~----~~LS~G~~qrv~l 148 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGS------ALAIVGLAGY-------EDTLV----RQLSAGQKKRLAL 148 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHH------HHHHcCChhh-------ccCCh----hhCCHHHHHHHHH
Confidence 99999999987 9999985321 1122 22222 5555555332 23333 5799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeC
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSD 1219 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~ 1219 (1255)
|||++++|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999999998753 46899999999999976 899999875
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=321.84 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=161.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999963 459999999999999999999999999999999999999999999999999875 34567899999
Q ss_pred EccCCccC-CCchhhhcccCC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1084 IPQDPTLF-SGSVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1084 vpQdp~Lf-~gTIr~Nl~~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+||++.++ ..|+++|+.... ...+..+.+ +++..++.+.. +..+ .+||+|||||++||||
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~lara 141 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITE------LCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRL 141 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHH------HHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHH
Confidence 99999987 479999997421 111222333 55555553322 2222 4699999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEE
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLS 1216 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~v 1216 (1255)
++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+.+||.-.+
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999999999853 57899999999999999987543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=324.53 Aligned_cols=163 Identities=23% Similarity=0.354 Sum_probs=125.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCC-ccCCCchhhhcccCCC-
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDP-TLFSGSVRYNLDPLSQ- 1104 (1255)
Q Consensus 1027 ~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp-~Lf~gTIr~Nl~~~~~- 1104 (1255)
+|..||.+|++||||-||||++++|.|.++|++|+ ..+ -+++|=||-- .-|+||+++-|.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45667899999999999999999999999999998 222 3588999933 2388999887642111
Q ss_pred -CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHH
Q 000845 1105 -FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183 (1255)
Q Consensus 1105 -~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~ 1183 (1255)
+.+.-.+. +..+-.++ +..+...-.+|||||.||++||-||.|++++.+||||++.||.+-.-
T Consensus 429 ~~~~s~~~~-----ei~~pl~l-----------~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 429 AFGSSYFKT-----EIVKPLNL-----------EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hcccchhHH-----hhcCccch-----------HHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 22221211 13333333 33333344579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeC
Q 000845 1184 ILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSD 1219 (1255)
Q Consensus 1184 ~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~ 1219 (1255)
.+-++||+.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999998865 46899999999999876 899999964
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=365.67 Aligned_cols=212 Identities=18% Similarity=0.199 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999953 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEccCCcc--C-------CCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1083 IIPQDPTL--F-------SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1083 ~vpQdp~L--f-------~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
++||+|.+ + .-|+++|+.... ..++++.+ +++..++.+.... ....|||||||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~l~~~~l~~~~~~-----------~~~~LSgG~~q 142 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQ------LAQQFGITALLDR-----------RFKYLSTGETR 142 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHH------HHHHcCCHhhhhC-----------CcccCCHHHHH
Confidence 99998753 2 358888875321 11233433 6777776554332 22479999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 36899999999999876 999999999999999999988
Q ss_pred hhc
Q 000845 1232 LRR 1234 (1255)
Q Consensus 1232 l~~ 1234 (1255)
...
T Consensus 223 ~~~ 225 (490)
T PRK10938 223 LQQ 225 (490)
T ss_pred hcc
Confidence 753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=291.41 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=171.9
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH---h
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---L 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~---l 1077 (1255)
-|+.++++..-+.. .-.+|++|+|.|++||.|||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888888776533 235999999999999999999999999999999999999999999999999999998654 4
Q ss_pred h-cccEEEccCCccCCC-chhhhcc-cC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1078 R-SNLGIIPQDPTLFSG-SVRYNLD-PL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1078 R-~~i~~vpQdp~Lf~g-TIr~Nl~-~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
| +++++|+|.-+|.+. |--||.. |. ++...+.-.. ..+-|+++||.+-+... ..+|||||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~---A~~lL~~vGLg~Rl~Hy-----------P~qLSGGE 151 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG---AKALLEAVGLGKRLTHY-----------PAQLSGGE 151 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH---HHHHHHHhCcccccccC-----------ccccCchH
Confidence 5 579999999988764 8889985 32 2211111100 01246666665544443 45799999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEEEEeCCEEEEE
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1225 (1255)
+||++||||+.-.|+||+-||||-+||.+|.+.|-+.+...- .+.|.++|||++.....|||++-|.+|++++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999999887654 47899999999999999999999999999864
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.99 Aligned_cols=192 Identities=21% Similarity=0.314 Sum_probs=139.2
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.+-+.||+|.|+.. .|.+++++|-|.--.+||||||+|-|||||+++|.|-++|+.|...=+ -|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 46789999999754 568999999999999999999999999999999999999999976432 255788
Q ss_pred EEccCCc-cCC--CchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1083 IIPQDPT-LFS--GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1083 ~vpQdp~-Lf~--gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+.-|... -++ .|--|.|.-.-...-++... +|...||..... |. .-..||||||-|+++|-
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK------~LG~fGL~sHAH-------Ti---kikdLSGGQKaRValae 717 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARK------QLGTFGLASHAH-------TI---KIKDLSGGQKARVALAE 717 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHH------Hhhhhhhhhccc-------eE---eeeecCCcchHHHHHHH
Confidence 8888652 111 12222221100111122221 343333322211 11 11369999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcC-EEEEEeCCEEEE
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCN-MVLSMSDGKLVE 1224 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D-rI~vl~~G~ive 1224 (1255)
.-++.|+||||||||++||.++-..+-++|+++ +..||+|+|+-..|...| ..+|+++-.|-|
T Consensus 718 Lal~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 718 LALGGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred HhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 999999999999999999999999999999875 447999999999987643 355666544443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=302.27 Aligned_cols=164 Identities=31% Similarity=0.478 Sum_probs=137.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc--------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------------- 503 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-------------------- 503 (1255)
-|+++|++.+|.. ..+|+|||++|++||.++|+||+||||||||++|.|.-++.+|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4789999999974 46999999999999999999999999999999999999999981
Q ss_pred ------ccCCCCCCC---------------------------ccccc------cCCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 504 ------DLKMLPFGD---------------------------LTQIG------ERGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 504 ------Di~~lp~gd---------------------------~T~iG------e~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
.+..+|+-. ...|| .-...|||||||||||||||.-+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 122333210 01122 245789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcccc-CCEEEEEeCCEEEEecChhHHhhc
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLPA-FDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|+|||||||||+....+.+ ++..+ ..|.|.|+|||.+.|.+. ||+|+.|++|+|+++|+++++..+
T Consensus 159 LFDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 159 LFDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred eecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999998877754 44444 358999999999999975 599999999999999999988643
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=365.51 Aligned_cols=224 Identities=21% Similarity=0.358 Sum_probs=179.1
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCCChH
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i~~~ 1075 (1255)
-|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24699999999999999999999999999999999999986 799999999999877654
Q ss_pred H---hh-cccEEEccCCc--cCC-CchhhhcccC----CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCC
Q 000845 1076 D---LR-SNLGIIPQDPT--LFS-GSVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1076 ~---lR-~~i~~vpQdp~--Lf~-gTIr~Nl~~~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
. +| ++++||||+|. ++. -|+++|+... ...+.++..+ ...++++.+++.+... ......
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~gl~~~~~--------~~~~~~ 154 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG--EILNCLDRVGIRQAAK--------RLTDYP 154 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHCCCCChHH--------HHhhCC
Confidence 3 34 57999999985 444 4889987521 1122222211 0012666666643110 112233
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999998864 37899999999999876 99999999999
Q ss_pred EEEEcChhHHhhcCC
Q 000845 1222 LVEYDEPKKLLRRQD 1236 (1255)
Q Consensus 1222 ive~G~~~eLl~~~~ 1236 (1255)
+++.|++++++..+.
T Consensus 235 i~~~g~~~~~~~~~~ 249 (529)
T PRK15134 235 CVEQNRAATLFSAPT 249 (529)
T ss_pred EEEeCCHHHHhhCCC
Confidence 999999999976543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=319.64 Aligned_cols=193 Identities=26% Similarity=0.346 Sum_probs=164.0
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999963 359999999999999999999999999999999999999999999999998753 2 27889999
Q ss_pred EccCCccC-CCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLF-SGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf-~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
++|++.++ ..|+++|+.... ...++++.+ +++..++.+.... + ...||||||||++|||
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-~----------~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAA------ALEAVGLAPLAHL-P----------FGYLSAGQKRRVALAR 140 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHH------HHHHcCCHHHHcC-C----------hhhcCHHHHHHHHHHH
Confidence 99988775 579999986422 223444554 7888887654322 1 2469999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeC
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSD 1219 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~ 1219 (1255)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. |+++.++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999999998753 57899999999999988 99988754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=361.66 Aligned_cols=211 Identities=22% Similarity=0.318 Sum_probs=173.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999953 459999999999999999999999999999999999999999999999999976543 3467899
Q ss_pred EEEccCCccCCC-chhhhcccCC-----C-CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS-----Q-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~-----~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
+||||+|.+|.+ |+++|+.... . ...++..+ ...++++.+++ +........+||||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY--EAREQLEHLGV-----------DIDPDTPLKYLSIGQRQM 148 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH--HHHHHHHHcCC-----------CCCcCCchhhCCHHHHHH
Confidence 999999998876 9999997421 1 11122111 00114444443 222223345799999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.+++
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999998764 47899999999999876 999999999999987764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=361.87 Aligned_cols=212 Identities=19% Similarity=0.336 Sum_probs=173.9
Q ss_pred EEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhcccEEE
Q 000845 1006 IYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNLGII 1084 (1255)
Q Consensus 1006 ~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i~~v 1084 (1255)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999953 469999999999999999999999999999999999999999999999999976654 3457889999
Q ss_pred ccCCccCC-CchhhhcccCC----C--CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1085 PQDPTLFS-GSVRYNLDPLS----Q--FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1085 pQdp~Lf~-gTIr~Nl~~~~----~--~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
||++.+|. .|+++|+.... . .+.++..+ ...+.++.+ |++........+||||||||++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~l 145 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----------DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEI 145 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----------HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHH
Confidence 99998776 49999997421 1 12222211 111222222 33333334456899999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
||||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999999999998864 47899999999999876 9999999999999999988864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=318.68 Aligned_cols=192 Identities=23% Similarity=0.306 Sum_probs=160.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999953 46999999999999999999999999999999999999999999999999988765 456789999
Q ss_pred EccCCccCC-CchhhhcccCCC-CC--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLSQ-FT--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~~-~s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+||++.+|. .|+++|+..... .. ++++.+ +++..++.++... . ..+||||||||++|||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~------~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIED------ALAAVGLTGFEDL-------P----AAQLSAGQQRRLALAR 140 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHH------HHHHcCCHHHhcC-------C----hhhcCHHHHHHHHHHH
Confidence 999999886 699999964321 11 223444 7778887665432 2 2479999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEeccCchhhhhcCEEEE
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRRE-FANCTVITVAHRIATVMDCNMVLS 1216 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~-~~~~TvI~IaHrl~ti~~~DrI~v 1216 (1255)
|++++|+++||||||++||+.+.+.+.+.|++. ..+.|+|++||+...+ .||+++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999999999875 3578999999998544 3476654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=324.21 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=160.1
Q ss_pred EEEEEEEEEeCC----C-CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEc--C--EeCCCCCh
Q 000845 1004 VEIYDLQIRYRP----N-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID--G--LDITTIGL 1074 (1255)
Q Consensus 1004 I~~~nvs~~Y~~----~-~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~id--G--~di~~i~~ 1074 (1255)
|+++|++++|+. + ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+| | .++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 1 2469999999999999999999999999999999999999999999998 4 36666665
Q ss_pred HH---h-hcccEEEccCCccCCC-chhhhcccC---CCCCh----HHHHhccCchhHHHhccHHHHHHhhhcCccchhcC
Q 000845 1075 YD---L-RSNLGIIPQDPTLFSG-SVRYNLDPL---SQFTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ 1142 (1255)
Q Consensus 1075 ~~---l-R~~i~~vpQdp~Lf~g-TIr~Nl~~~---~~~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e 1142 (1255)
.. + +++++|+||+|.+|.. |+++|+... ..... +++.+ +++..++.+.. ...
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~----------~~~ 145 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARE------LLARLNIPERL----------WHL 145 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHH------HHHHcCCchhh----------hhC
Confidence 43 3 4679999999998875 999998631 11211 12222 45555443221 122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEE
Q 000845 1143 DGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSM 1217 (1255)
Q Consensus 1143 ~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl 1217 (1255)
.+.+||||||||++||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|+.+
T Consensus 146 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 146 PPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 346799999999999999999999999999999999999999999998864 47899999999998864 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=362.30 Aligned_cols=215 Identities=22% Similarity=0.359 Sum_probs=174.7
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCCEEEEcCEeCCCCChHH-hhcc
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP--TGGKIIIDGLDITTIGLYD-LRSN 1080 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~--~~G~I~idG~di~~i~~~~-lR~~ 1080 (1255)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999953 4599999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred cEEEccCCccCCC-chhhhcccCCC-------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLSQ-------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~~-------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++||||+|.+|.. |+++|+..... ...++..+ ...++++..++.+.. .+.. ...||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~------~~~~----~~~LSgG~~ 147 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL--RAKNLLRELQLDADN------VTRP----VGDYGGGQQ 147 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH--HHHHHHHHcCCCCCc------ccCc----hhhCCHHHH
Confidence 9999999988875 99999964211 11111111 001134444332110 1222 347999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
||++|||||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999999998753 47899999999999976 99999999999999998876
Q ss_pred Hh
Q 000845 1231 LL 1232 (1255)
Q Consensus 1231 Ll 1232 (1255)
..
T Consensus 228 ~~ 229 (500)
T TIGR02633 228 MS 229 (500)
T ss_pred CC
Confidence 53
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=325.95 Aligned_cols=216 Identities=26% Similarity=0.354 Sum_probs=172.5
Q ss_pred eEEEEEEEEEeCC------------------CCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEE
Q 000845 1003 KVEIYDLQIRYRP------------------NAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~------------------~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~i 1064 (1255)
.|+++||+..|+. ...++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5788888877743 1235999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCChHHhhcccEEEccCCccCC-CchhhhcccC---CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchh
Q 000845 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFS-GSVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140 (1255)
Q Consensus 1065 dG~di~~i~~~~lR~~i~~vpQdp~Lf~-gTIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v 1140 (1255)
||. +++++|++.+++ .|+++|+... ...+.++..+. ...+++..++. ..+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~~~~l~~~~l~-----------~~~ 137 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM--TPKIIEFSELG-----------EFI 137 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcCCc-----------hhh
Confidence 994 456788876664 5999998632 12333333220 01133333333 333
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEe
Q 000845 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMS 1218 (1255)
Q Consensus 1141 ~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~ 1218 (1255)
......||+|||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|+
T Consensus 138 ~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~ 217 (264)
T PRK13546 138 YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIE 217 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEE
Confidence 34456899999999999999999999999999999999999999999998753 47899999999999876 99999999
Q ss_pred CCEEEEEcChhHHhhcCChHHHHHHH
Q 000845 1219 DGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1219 ~G~ive~G~~~eLl~~~~~~f~~l~~ 1244 (1255)
+|++++.|++++++++....|+.+.+
T Consensus 218 ~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 218 GGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 99999999999999875554544443
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=364.68 Aligned_cols=203 Identities=25% Similarity=0.353 Sum_probs=168.5
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC-c
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT--GGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-S 1094 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~--~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g-T 1094 (1255)
+.+|+|+|++++|||++||+||||||||||+++|.|+.+|+ +|+|.+||.++.. ..+++++||||++.+|.. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 8999999998742 456789999999999964 9
Q ss_pred hhhhcccCC------CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC-CCCCChhHHHHHHHHHHHccCCCe
Q 000845 1095 VRYNLDPLS------QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD-GANWSMGQRQLIGLGRVVLRRRQI 1167 (1255)
Q Consensus 1095 Ir~Nl~~~~------~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~-G~~LSgGQrQrl~lARAlL~~~~I 1167 (1255)
++||+.+.. ..++++..+. ..+.++..+|. +..||.+|+. ...||||||||++|||||+++|+|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~--v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV--AESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH--HHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 999996421 2233332210 01134444432 3347777653 568999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchh-hh-hcCEEEEEeCCEEEEEcChhHHhh
Q 000845 1168 LVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIAT-VM-DCNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1168 LiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t-i~-~~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
|+|||||++||+.+...+.+.|++.. +++|||+++|+++. +. .||+|++|++|++++.|+++++..
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999999865 58999999999984 54 599999999999999999999864
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=340.62 Aligned_cols=214 Identities=22% Similarity=0.319 Sum_probs=171.6
Q ss_pred eEEEEEEEEEeCCCC-CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhccc
Q 000845 1003 KVEIYDLQIRYRPNA-PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~-~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
.++++|++++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999996532 4699999999999999999999999999999999999999999999999762
Q ss_pred EEEccCCccCC-CchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHH
Q 000845 1082 GIIPQDPTLFS-GSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~vpQdp~Lf~-gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
++++.+.++. .|+++|+.... ..++++..+ ...++++.+++.++... ....||||||||++|
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e--~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaL 154 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKE--IIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGF 154 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHH--HHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHH
Confidence 2333444443 49999986422 233333321 00125666666555433 235799999999999
Q ss_pred HHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 155 ArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 155 AISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999998764 47899999999999976 9999999999999999999998752
Q ss_pred ChHHHHHH
Q 000845 1236 DSLFAQLV 1243 (1255)
Q Consensus 1236 ~~~f~~l~ 1243 (1255)
..|...+
T Consensus 235 -~~~~~~~ 241 (549)
T PRK13545 235 -DEFLKKY 241 (549)
T ss_pred -HHHHHHH
Confidence 3444433
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=293.81 Aligned_cols=469 Identities=18% Similarity=0.171 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000845 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVES-LAGRHWFFQSRLTG 196 (1255)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 196 (1255)
.-.++|.+++.++....+.+...+... .++..+-+++-+.+...-....+.+++++..++.+ ++.--..+.++...
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I 80 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFI 80 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888776666555544333 33333334443322111111122233333333322 22223344555566
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000845 197 LKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIV 276 (1255)
Q Consensus 197 ~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~~~~~~~pl~i~v~~~lL~~~lG~~~l~g~~~ 276 (1255)
.++|..+...| +.-+.......+++.+..-++.|+..|.-.+..+.++..+.+-+..+..+|++.-+..++++++.
T Consensus 81 ~klr~~~~~ki----l~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 81 YKLRSEFIKKI----LDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHH----hcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 67776665544 43333344456788899999999999998888888777666666677777877666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCc--hHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000845 277 MILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAW--DSYFKNVI-EKLRSEEYGWLKVLQLQKGYY 353 (1255)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~w--E~~~~~~i-~~~R~~El~~~~~~~~~~~~~ 353 (1255)
+++.+..+++..++.-++..+..+.-|+-.+..+.++.|-|-.|.+.= +..+.+.+ .+.++.+-. ..+...+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~----~~~~n~f~ 232 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH----IIRANTFH 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh----hhhhhHHH
Confidence 888888888888888888888888889999999999999999998762 22233332 223332221 11112221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000845 354 -MVLFWSSPILIGAATLLTCYFLGIPLN-PSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSD 431 (1255)
Q Consensus 354 -~~~~~~~~~~~~~~~f~~~~~~~~~L~-~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~Ri~~fL~~~e~~~~~ 431 (1255)
....|....+..++....|+...-... ...+.|....+-.++.|+.++...++.+..|.++++||.++=..|+..+-.
T Consensus 233 ~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~ 312 (546)
T COG4615 233 LLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC
Confidence 112222222222222222222111111 223444444556679999999999999999999999999987766543322
Q ss_pred hhcccccccCcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc--------
Q 000845 432 MQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------- 503 (1255)
Q Consensus 432 ~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-------- 503 (1255)
.+ .+ .|.=..++++|+.|+|+... +-+.-||++|++||++.++|.|||||||++++|+|.+.|.+|+
T Consensus 313 ~~-q~--~p~~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 313 RP-QA--FPDWKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred CC-Cc--CCcccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 11 11 11234699999999998653 7889999999999999999999999999999999999999991
Q ss_pred -----------------ccCCCC---CCC-------------------ccccccC---CCcCChHHHHHHHHHHHHccCC
Q 000845 504 -----------------DLKMLP---FGD-------------------LTQIGER---GVNLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 504 -----------------Di~~lp---~gd-------------------~T~iGe~---G~~LSGGQkqRIaLARAly~~~ 541 (1255)
|...+| .++ .|.+-++ -..||-|||.|+|+--|+.-+.
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 111111 111 1222222 2469999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccccCCEEEEEeCCEEEEe
Q 000845 542 DIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLPAFDSILLISGGEIIQA 602 (1255)
Q Consensus 542 ~ilLLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~ 602 (1255)
|||+|||=-+--||+=+++-++..+-.+ ..|||++.|||+-.+..+|||++.|++|++++.
T Consensus 468 ~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 468 DILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999887776666333 259999999999999999999999999999875
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=366.27 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeCCC--CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHh---
Q 000845 1003 KVEIYDLQIRYRPN--APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL--- 1077 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~--~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~l--- 1077 (1255)
-++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+..++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcccEEEccCCccCCC-chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1078 -RSNLGIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1078 -R~~i~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
|+.++|+||+|.+|++ |+.||+.... ..+.++..+ ...+.++..++. ..+.....+||+||+
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~lgl~-----------~~~~~~~~~LS~Gq~ 150 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLL--RAQELLQRLGLE-----------DRVEYQPSQLSGGQQ 150 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHCCCh-----------hhhcCCcccCCHHHH
Confidence 5789999999999975 9999997311 111111110 001144444444 334444568999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeCCEEEEEcChhHH
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 1231 (1255)
||++|||||+++|++|||||||++||+++.+.+.+.+++.. +++|+|+|||+++.+..||++++|++|++++.|+++|.
T Consensus 151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999998764 47899999999999988999999999999999999988
Q ss_pred h
Q 000845 1232 L 1232 (1255)
Q Consensus 1232 l 1232 (1255)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 6
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=322.64 Aligned_cols=186 Identities=25% Similarity=0.419 Sum_probs=156.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCcc---CCCchhhhcccC
Q 000845 1026 CTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL---FSGSVRYNLDPL 1102 (1255)
Q Consensus 1026 ~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~L---f~gTIr~Nl~~~ 1102 (1255)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999998532
Q ss_pred C--------CCC---hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEe
Q 000845 1103 S--------QFT---DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLD 1171 (1255)
Q Consensus 1103 ~--------~~s---d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLD 1171 (1255)
. ... ++++.+ +++.+++.+... + ....||||||||++||||++++|++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~laral~~~p~llilD 138 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRD------ALRRVGLTELAD-------R----PVGELSGGQRQRVLVARALATRPSVLLLD 138 (223)
T ss_pred cccccccccCCcHHHHHHHHH------HHHHhCCchhhc-------C----ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 011 122333 667776654432 2 23469999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1172 EATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1172 E~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++..+
T Consensus 139 EP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 139 EPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999999998765 47899999999998876 9999999 7999999999998764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=313.80 Aligned_cols=177 Identities=27% Similarity=0.442 Sum_probs=145.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCC--CChHHhhcccEEEccCC--ccCCC
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITT--IGLYDLRSNLGIIPQDP--TLFSG 1093 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~--i~~~~lR~~i~~vpQdp--~Lf~g 1093 (1255)
..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23446788999999998 57888
Q ss_pred chhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEE
Q 000845 1094 SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170 (1255)
Q Consensus 1094 TIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiL 1170 (1255)
|+++|+.... ..++++..+ ...++++.+++.+..... ...||||||||++|||||+++|++|||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVER--RVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999996421 123222211 001266666665544332 357999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchh
Q 000845 1171 DEATASIDNATDSILQNTIRREF-ANCTVITVAHRIAT 1207 (1255)
Q Consensus 1171 DE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t 1207 (1255)
||||++||+.+.+.+.+.|++.. +++|+|+|||+++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999998864 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=361.31 Aligned_cols=216 Identities=23% Similarity=0.413 Sum_probs=172.9
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCCEEEEc----------------
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV--EPTGGKIIID---------------- 1065 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~--~~~~G~I~id---------------- 1065 (1255)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 46999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---hHHhhcccEEEccC-CccCCC-chhhhcccC---CCCChHHHHhccCchhHHHhc
Q 000845 1066 -------GLDIT-------TIG---LYDLRSNLGIIPQD-PTLFSG-SVRYNLDPL---SQFTDQEIWEVTIPSQVLEKC 1123 (1255)
Q Consensus 1066 -------G~di~-------~i~---~~~lR~~i~~vpQd-p~Lf~g-TIr~Nl~~~---~~~sd~ei~~~~~~~~al~~~ 1123 (1255)
|.++. ..+ ...+|++++|+||+ +.+|+. |+++|+.+. .....++..+ ...++++.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~ 156 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG--RAVDLIEMV 156 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHc
Confidence 33331 111 13467889999998 577764 999999631 1122222211 001256666
Q ss_pred cHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Q 000845 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITV 1201 (1255)
Q Consensus 1124 ~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~I 1201 (1255)
++.+... ....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .++|||+|
T Consensus 157 gl~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 157 QLSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred CChhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 6644432 2335799999999999999999999999999999999999999999998864 37899999
Q ss_pred ccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1202 AHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1202 aHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 999999976 999999999999999999888653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=312.14 Aligned_cols=188 Identities=17% Similarity=0.342 Sum_probs=157.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|+. +.++ ++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.. ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999953 3455 599999999999999999999999999999999999999999999986543 456999
Q ss_pred EccCCcc-CCCchhhhcccCCC-C-ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1084 IPQDPTL-FSGSVRYNLDPLSQ-F-TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1084 vpQdp~L-f~gTIr~Nl~~~~~-~-sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+||++.+ |..|+++|+..... . .++++.+ +++.+++.+... ..+.+||||||||++||||
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~------~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYA------AIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARL 137 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHH------HHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHH
Confidence 9998754 67899999964321 1 2334444 667777655432 2346799999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEeccCchhhhhcCEEE
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRRE-FANCTVITVAHRIATVMDCNMVL 1215 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~-~~~~TvI~IaHrl~ti~~~DrI~ 1215 (1255)
++++|++++|||||++||+.+.+.+.+.|++. .+++|+|+|||+++.+..+|.|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999999999753 35799999999999999998763
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=318.26 Aligned_cols=197 Identities=23% Similarity=0.313 Sum_probs=154.5
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
+.++|++.+|.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 677888888853 5699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EccCCccCCCchhhhcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1084 IPQDPTLFSGSVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
+..+.|+++|+.... ..+.++..+ ...++++..++.+. +++.+ ..||||||||++||||
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv~lara 156 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDE--KIDEIIEFSELGDF-------IDLPV----KTYSSGMKARLAFAIA 156 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHHcCChhh-------hhCCh----hhCCHHHHHHHHHHHH
Confidence 223569999986321 112222111 00114444444332 23333 5799999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEc
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1226 (1255)
++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999998764 35899999999999875 9999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.09 Aligned_cols=211 Identities=25% Similarity=0.386 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHH-hhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD-LRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~-lR~~i 1081 (1255)
-++++|++.+|++ -.+|+||||+++|||..|++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+ .+..|
T Consensus 8 ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 5889999999964 36999999999999999999999999999999999999999999999999998777666 56679
Q ss_pred EEEccCCccCCC-chhhhcccCCCC-------ChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQF-------TDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~-------sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
++|.||+.|++. ||.|||-...+. +..++.+. ..++++..++. ...|++|+ +||+||||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~--A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ 152 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR--ARELLARLGLD-------IDPDTLVG----DLSIAQRQ 152 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH--HHHHHHHcCCC-------CChhhhhh----hCCHHHHH
Confidence 999999999976 999999544332 22333220 01133333322 22667775 69999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
.+.||||+..+++|||||||||+|+..-.+.+.+.+++.. +|.++|+||||++.+.. ||||.||.+|+.+..+..
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999988888888888875 68999999999999977 999999999999988773
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=275.37 Aligned_cols=226 Identities=23% Similarity=0.381 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCE--eCCCCCh----HH
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGL--DITTIGL----YD 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~--di~~i~~----~~ 1076 (1255)
.|+++|+++.|.. ..+|-||+|+-+.||.+.+.||||+|||||++.|-=+--|.+|+..|.|. |.++.+. ..
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 4889999999964 35899999999999999999999999999999999888999999999875 5555553 46
Q ss_pred hhcccEEEccCCccCCC-chhhhcc--cCC--CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhH
Q 000845 1077 LRSNLGIIPQDPTLFSG-SVRYNLD--PLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151 (1255)
Q Consensus 1077 lR~~i~~vpQdp~Lf~g-TIr~Nl~--~~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1151 (1255)
||+.+|+|+|.-.|.+- |+-|||- |.. ..++++-.. ...+.|++..|.++.+..| -.|||||
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~--~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA--RAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHH--HHHHHHHHhccccccccCc-----------eecccch
Confidence 89999999999999875 9999994 321 234443322 0123567777777776665 3699999
Q ss_pred HHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChh
Q 000845 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPK 1229 (1255)
Q Consensus 1152 rQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1229 (1255)
+||++|||||+-+|++|++||||++||||-...|-+.|++.. .|-|-++|||..+..+. +.+|+.|++|+|+|.|++.
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999876 37799999999999876 8999999999999999987
Q ss_pred HHhhcCChHHHHHH
Q 000845 1230 KLLRRQDSLFAQLV 1243 (1255)
Q Consensus 1230 eLl~~~~~~f~~l~ 1243 (1255)
-.-+-....|++.+
T Consensus 227 ~ft~p~te~f~~yl 240 (242)
T COG4161 227 CFTEPQTEAFKNYL 240 (242)
T ss_pred hccCccHHHHHHHh
Confidence 76543334555443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=361.76 Aligned_cols=205 Identities=20% Similarity=0.306 Sum_probs=170.9
Q ss_pred CCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CCEEEEcCEeCCCCChHHhhcccEEEccCCccCC-
Q 000845 1017 APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFS- 1092 (1255)
Q Consensus 1017 ~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~---~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~- 1092 (1255)
.+++|+|+|++|+|||.+||+||||||||||+++|.|..++. +|+|.+||.+++ ...+|+.++||||++.+|+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 457999999999999999999999999999999999998875 899999999875 3568899999999999995
Q ss_pred CchhhhcccCC------CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCC--CCCCChhHHHHHHHHHHHccC
Q 000845 1093 GSVRYNLDPLS------QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQD--GANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1093 gTIr~Nl~~~~------~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~--G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
.||||||.+.. ..+.++..+ ...+.++..++ ++..||.+|+. +..||||||||++|||||+.+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~--~v~~~l~~lgL-------~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRE--RVDEVLQALGL-------RKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHH--HHHHHHHHcCc-------hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 59999996421 122222211 00113333333 34678999984 468999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCch-hh-hhcCEEEEEeCCEEEEEcChhHHhh
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIA-TV-MDCNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~-ti-~~~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
|+|++||||||+||+.+...+.+.|++.. +++|+|+++|+++ .+ ..||+|++|++|+++++|+++++.+
T Consensus 185 p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred CCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999999999999999999999999875 4799999999996 44 5599999999999999999998854
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=352.53 Aligned_cols=214 Identities=19% Similarity=0.306 Sum_probs=165.1
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|. .+|+|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999953 46999999999999999999999999999999999999999999999972 46999
Q ss_pred EccCCccCCC-chhhhcccCCC-C----------------ChH------HHHhccC-chhHHHhccHHHHHHhhhcCccc
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLSQ-F----------------TDQ------EIWEVTI-PSQVLEKCQLREVIQEKKEGLDS 1138 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~~-~----------------sd~------ei~~~~~-~~~al~~~~l~~~i~~lp~gldt 1138 (1255)
+||++.+|.. |+++|+..... . +.+ +..+... ....-....+.+.+..+ |++.
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~ 146 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE 146 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence 9999988865 99999863210 0 000 0000000 00000001112222222 3332
Q ss_pred hh-cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEE
Q 000845 1139 LV-VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLS 1216 (1255)
Q Consensus 1139 ~v-~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~v 1216 (1255)
.. .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++ .++|||+|||+++.+.. ||+|++
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 22 123467999999999999999999999999999999999999999999975 47899999999999876 999999
Q ss_pred EeCCEEE-EEcChhHHhhc
Q 000845 1217 MSDGKLV-EYDEPKKLLRR 1234 (1255)
Q Consensus 1217 l~~G~iv-e~G~~~eLl~~ 1234 (1255)
|++|+++ +.|++++.++.
T Consensus 225 l~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 225 LDYGELRVYPGNYDEYMTA 243 (530)
T ss_pred EeCCEEEEecCCHHHHHHH
Confidence 9999994 78999988754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=299.30 Aligned_cols=164 Identities=34% Similarity=0.480 Sum_probs=137.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~------------ 506 (1255)
|+|+|+++.|.. +.+++|+||+|++||+++++||+||||||+|++|.+.++|++| .|+.
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 689999999973 5799999999999999999999999999999999999999999 1221
Q ss_pred -------CCCCC---------------Cc-----------c--------ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 -------MLPFG---------------DL-----------T--------QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 -------~lp~g---------------d~-----------T--------~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.+|+- +. . ....-...|||||+|||.+||||..+|+|+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 22210 00 0 1123468899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCc-cccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDF-LPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~-l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
+|||||||||.+++.+ ++-+..+. -+||+|+|||+++. ++.+|+|.+|++|++++.+++++++.+.
T Consensus 159 MDEPFgALDpI~R~~l-Q~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 159 MDEPFGALDPITRKQL-QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred ecCCccccChhhHHHH-HHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 9999999999998887 44454433 38999999999987 6789999999999999999999998653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=329.93 Aligned_cols=189 Identities=26% Similarity=0.391 Sum_probs=156.6
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC-chhhhcccCC---CCChHHHH
Q 000845 1036 VVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIW 1111 (1255)
Q Consensus 1036 IvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g-TIr~Nl~~~~---~~sd~ei~ 1111 (1255)
|+||||||||||+++|.|+++|++|+|.+||.++...+. .+++++|+||++.+|+. |+++|+.+.. ..+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999976 9999997431 12222221
Q ss_pred hccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 000845 1112 EVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR 1191 (1255)
Q Consensus 1112 ~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~ 1191 (1255)
+ ...++++..++.++.++ ...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 79 ~--~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 79 P--RVLEALRLVQLEEFADR-----------KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred H--HHHHHHHHcCCcchhcC-----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 1 00125666655444332 3357999999999999999999999999999999999999999999988
Q ss_pred HcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCChHH
Q 000845 1192 EFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239 (1255)
Q Consensus 1192 ~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~~f 1239 (1255)
..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+++...|
T Consensus 146 l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 146 IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 653 7899999999999876 99999999999999999999998765544
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=284.90 Aligned_cols=143 Identities=29% Similarity=0.504 Sum_probs=134.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
++++|++++|.. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999994 47899
Q ss_pred EccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHcc
Q 000845 1084 IPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLR 1163 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~ 1163 (1255)
+|| ||+||+||++||||+++
T Consensus 68 ~~~------------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 68 FEQ------------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred Ecc------------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 988 99999999999999999
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1164 ~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+.. ||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999876 5799999999999976 89999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=348.13 Aligned_cols=209 Identities=22% Similarity=0.335 Sum_probs=169.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+|+
T Consensus 4 ~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 4899999999962 34699999999999999999999999999999999999999999999975 25799
Q ss_pred EEccCCccCCC-chhhhcccCC-C-----------------CCh---------HHHHhccCchhHHHhccHHHH------
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS-Q-----------------FTD---------QEIWEVTIPSQVLEKCQLREV------ 1128 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~-~-----------------~sd---------~ei~~~~~~~~al~~~~l~~~------ 1128 (1255)
||||+|.+|+. |+++|+...- . ..+ +++.+ +++.++.++.
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 145 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE------IIDAADAWDLDRKLEI 145 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHH------HHHhcCcchhHHHHHH
Confidence 99999998865 9999996411 0 001 11222 4555554322
Q ss_pred -HHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchh
Q 000845 1129 -IQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIAT 1207 (1255)
Q Consensus 1129 -i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~t 1207 (1255)
+..+ |++. ......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. ++|||+|||+++.
T Consensus 146 ~l~~~--~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~ 220 (552)
T TIGR03719 146 AMDAL--RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYF 220 (552)
T ss_pred HHhhC--CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHH
Confidence 2221 3321 23345689999999999999999999999999999999999999999999875 4699999999999
Q ss_pred hhh-cCEEEEEeCCEEE-EEcChhHHhhc
Q 000845 1208 VMD-CNMVLSMSDGKLV-EYDEPKKLLRR 1234 (1255)
Q Consensus 1208 i~~-~DrI~vl~~G~iv-e~G~~~eLl~~ 1234 (1255)
+.. ||+|++|++|+++ ..|++++.++.
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 987 8999999999976 67998876653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=312.16 Aligned_cols=192 Identities=24% Similarity=0.326 Sum_probs=155.2
Q ss_pred EEeCCCCCceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEc
Q 000845 1011 IRYRPNAPLVLRGITCTFE-----GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIP 1085 (1255)
Q Consensus 1011 ~~Y~~~~~~vL~~is~~I~-----~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vp 1085 (1255)
|+|++.. ..++|++|+++ +||++||+|+||||||||+++|.|+++|++|+|.++|. +|+|+|
T Consensus 1 ~~y~~~~-~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMK-KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCcccc-cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 4575433 47888888887 69999999999999999999999999999999999984 689999
Q ss_pred cCCc-cCCCchhhhcccCCC-C-C-hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHH
Q 000845 1086 QDPT-LFSGSVRYNLDPLSQ-F-T-DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1086 Qdp~-Lf~gTIr~Nl~~~~~-~-s-d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
|++. .+.+|+++|+..... . . .+...+ +++..++.+.. ......||||||||++|||||
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~------~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL 130 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTE------IAKPLQIEQIL-----------DREVPELSGGELQRVAIAACL 130 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHH------HHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9997 468899999963211 1 1 111222 55555554332 233457999999999999999
Q ss_pred ccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEE--EEcChhHHh
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLV--EYDEPKKLL 1232 (1255)
Q Consensus 1162 L~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv--e~G~~~eLl 1232 (1255)
+++|+++||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 131 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 131 SKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999999999999865 37899999999999986 9999999875444 567777765
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=347.48 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=166.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++|++++|+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++ +.+|+
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 5899999999962 25699999999999999999999999999999999999999999999975 24799
Q ss_pred EEccCCccCCC-chhhhcccCC-CC----------------ChHHHHh----ccCchhHHHhcc-------HHHHHHhhh
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS-QF----------------TDQEIWE----VTIPSQVLEKCQ-------LREVIQEKK 1133 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~-~~----------------sd~ei~~----~~~~~~al~~~~-------l~~~i~~lp 1133 (1255)
||||+|.+++. |+++|+.... .+ .++++.. .....+.++.++ +.+.+..+
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 152 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL- 152 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence 99999999876 9999986321 00 0000000 000000111111 11122221
Q ss_pred cCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cC
Q 000845 1134 EGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CN 1212 (1255)
Q Consensus 1134 ~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~D 1212 (1255)
|++ .......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. +.|||+|||+++.+.. ||
T Consensus 153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence 332 123344579999999999999999999999999999999999999999999875 3599999999999986 89
Q ss_pred EEEEEeCCEEE-EEcChhHHhhc
Q 000845 1213 MVLSMSDGKLV-EYDEPKKLLRR 1234 (1255)
Q Consensus 1213 rI~vl~~G~iv-e~G~~~eLl~~ 1234 (1255)
+|++|++|+++ ..|++++.++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred eEEEEeCCEEEEecCCHHHHHHH
Confidence 99999999987 77888876543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.13 Aligned_cols=175 Identities=27% Similarity=0.411 Sum_probs=155.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC---------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG--------------------- 502 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G--------------------- 502 (1255)
.|+++|++++|+... .++|+|+||+|++||+++|+|++|||||||+++|.|+++ .+|
T Consensus 2 ~i~~~nls~~~~~~~-~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGG-NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCC-CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 588999999997433 479999999999999999999999999999999999997 667
Q ss_pred ---------------------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 503 ---------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 503 ---------------------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
..+..+|.+++|.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 11345688889999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l~~~ 621 (1255)
+||||||++||+.+.+.+ ++.+....+++|+|+|||+++.+..||+|++|++|++++.|+++++......+.+++..
T Consensus 160 lllDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999998655 56666555689999999999998889999999999999999999998876777777654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=356.66 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=82.9
Q ss_pred CCCCCCChhHHHHHHHHHHHccC--CCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEE-
Q 000845 1142 QDGANWSMGQRQLIGLGRVVLRR--RQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSM- 1217 (1255)
Q Consensus 1142 e~G~~LSgGQrQrl~lARAlL~~--~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl- 1217 (1255)
.....|||||-||+-||+.|=.+ -=++||||||.+|-+.--..+.++|+++. .|.|||+|-|+.++|+.||.|+-|
T Consensus 1383 R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iidiG 1462 (1809)
T PRK00635 1383 QEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIHLG 1462 (1809)
T ss_pred CCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeC
Confidence 45678999999999999999765 34789999999999988888888888876 589999999999999999999999
Q ss_pred -----eCCEEEEEcChhHHhhc
Q 000845 1218 -----SDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1218 -----~~G~ive~G~~~eLl~~ 1234 (1255)
..|+|+.+|+|++++.+
T Consensus 1463 PgAG~~GG~iv~~G~~~~l~~~ 1484 (1809)
T PRK00635 1463 PGSGPQGGYLLSTSALKQSQPD 1484 (1809)
T ss_pred CCccCCCCEEEecCCHHHHhhh
Confidence 46999999999999754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=281.73 Aligned_cols=221 Identities=24% Similarity=0.404 Sum_probs=189.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+.+|. ...|++|+|++|++|...+|+||||+|||||+..+.|+.+.++|+|.|||.++.+.+.++|-+++++
T Consensus 2 I~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 68899999995 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccCC-CchhhhcccCC------CCC--hHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHH
Q 000845 1084 IPQDPTLFS-GSVRYNLDPLS------QFT--DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1084 vpQdp~Lf~-gTIr~Nl~~~~------~~s--d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
+-|+.++-. -|||+=+.++. ..+ |.++.+ +|++-.+|.+.-.+. | ..||||||||
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~-----~aieyl~L~~l~dry---L--------d~LSGGQrQR 143 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-----EAIEYLHLEDLSDRY---L--------DELSGGQRQR 143 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHH-----HHHHHhcccchHHHh---H--------Hhcccchhhh
Confidence 999998754 49998876432 122 334443 377777665543322 1 2599999999
Q ss_pred HHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHH
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1231 (1255)
--+|-.+.++.+-++||||-++||......+++.+++... ++|+++|-|+.+.... +|.|+-|.+|+++.+|+|+|.
T Consensus 144 AfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999988653 7999999999999876 799999999999999999999
Q ss_pred hhcCChHHHHHHH
Q 000845 1232 LRRQDSLFAQLVK 1244 (1255)
Q Consensus 1232 l~~~~~~f~~l~~ 1244 (1255)
++. ....+++.
T Consensus 224 i~~--~~L~eiyd 234 (252)
T COG4604 224 IQP--EILSEIYD 234 (252)
T ss_pred cCH--HHHHHHhc
Confidence 974 45555554
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=279.14 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=170.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
+..++++.+|+....++|+|+|++|.+||.|.++||||||||||++++.|+.+|..|+|.+||..|+--+-+ =++
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rgv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----cee
Confidence 566789999975545699999999999999999999999999999999999999999999999998765433 499
Q ss_pred EccCCccCCC-chhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHH
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1084 vpQdp~Lf~g-TIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
|+|++-|++= |+.+|+.+.-+ ...++-.+ ...+.+..+||.++-.+. --+||||||||+.|||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~--~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiAR 145 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRRE--IAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIAR 145 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHH
Confidence 9999999984 99999875321 22221111 012356677766553222 2369999999999999
Q ss_pred HHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEe--CCEEEEEcChh
Q 000845 1160 VVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMS--DGKLVEYDEPK 1229 (1255)
Q Consensus 1160 AlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~~~ 1229 (1255)
||.-+|+.|+||||.++||.-|.+.+|+.|-+.. .++.+++|||+++...- ++|++||+ .|||++.=+++
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999999999999998765 47899999999998765 99999997 49999875543
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=314.66 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=157.9
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEE-----------EcCEeCCCCChH
Q 000845 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII-----------IDGLDITTIGLY 1075 (1255)
Q Consensus 1007 ~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~-----------idG~di~~i~~~ 1075 (1255)
.||+++|++. .++|+|+|+ +++||++||+|+||||||||+++|.|+++|++|+|. +||.++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999643 359999995 999999999999999999999999999999999996 889988766433
Q ss_pred Hhhc--ccEEEccCCccCC----CchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1076 DLRS--NLGIIPQDPTLFS----GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1076 ~lR~--~i~~vpQdp~Lf~----gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
..|. .+++++|++.+++ +++++|+... ..++++.+ +++..++.+ .......+||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~------~l~~~gl~~-----------~~~~~~~~LS~ 142 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKK--DERGKLDE------LVDQLELRH-----------VLDRNIDQLSG 142 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchh--HHHHHHHH------HHHHcCCch-----------hhcCChhhCCH
Confidence 3333 3678888766555 5566654311 11222333 566655543 33344568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCEEEE---
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVE--- 1224 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive--- 1224 (1255)
|||||++||||++++|++++|||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|+ |++++
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~ 221 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGV 221 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCccee
Confidence 999999999999999999999999999999999999999987653 7999999999999986 99999995 66665
Q ss_pred EcChhH
Q 000845 1225 YDEPKK 1230 (1255)
Q Consensus 1225 ~G~~~e 1230 (1255)
.|.|..
T Consensus 222 ~~~~~~ 227 (255)
T cd03236 222 VTLPKS 227 (255)
T ss_pred eecCcc
Confidence 344544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=314.54 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=175.4
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhccc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSNL 1081 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~i 1081 (1255)
.+++++++.+|+ .-.+++||||+|++||.-|++|.||+|||||++.|+|+|+|++|+|++||++++--++ +.+|..|
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 589999999997 3569999999999999999999999999999999999999999999999999875555 4588899
Q ss_pred EEEccCCccCCC-chhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHH
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRV 1160 (1255)
Q Consensus 1082 ~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARA 1160 (1255)
|+|.|++.|++. |+.|||....+.+---..+ ..++- ..+.+..++ -|++-...+.-..||.|||||+-|-+|
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~---~~~~~--~~i~~l~~~--yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLID---RRQAR--ARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccC---HHHHH--HHHHHHHHH--hCCCCCccceeecCCcchhHHHHHHHH
Confidence 999999999987 9999997654322000000 00011 112222222 233333333445699999999999999
Q ss_pred HccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcC
Q 000845 1161 VLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDE 1227 (1255)
Q Consensus 1161 lL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1227 (1255)
|+|+|+|||||||||-|-|..-+.+.+.+++.. .|+|||+|||+++.++. |||+-||.+|+++....
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999888988765 58999999999999987 99999999999987665
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=294.63 Aligned_cols=154 Identities=40% Similarity=0.505 Sum_probs=125.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc-------------c------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------D------ 504 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-------------D------ 504 (1255)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|.|..+|++|. |
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4788999999976 47999999999999999999999999999999999999999981 1
Q ss_pred -cCCCCCC-------------C-------------ccccc------cCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCC
Q 000845 505 -LKMLPFG-------------D-------------LTQIG------ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551 (1255)
Q Consensus 505 -i~~lp~g-------------d-------------~T~iG------e~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~S 551 (1255)
-..||.. . ...|| .....||||||||||||||+..+|+|+||||||+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1122210 0 01122 2357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCc-cccCCEEEEEeC--CEEE
Q 000845 552 ALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDF-LPAFDSILLISG--GEII 600 (1255)
Q Consensus 552 aLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~-l~~aD~Iivl~~--G~i~ 600 (1255)
|||+.|+.++-+.+.+-+. .++|+++|||+++. +--+|+|++|.+ |+|.
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999998887665554443 47999999999987 456899999988 5553
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=302.39 Aligned_cols=185 Identities=19% Similarity=0.269 Sum_probs=151.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEE-EcCEeCCCCChHHhhcccEEEccCCccCCC-chhh
Q 000845 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII-IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRY 1097 (1255)
Q Consensus 1020 vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~-idG~di~~i~~~~lR~~i~~vpQdp~Lf~g-TIr~ 1097 (1255)
||+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|++ |+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777543 13467788876 9999
Q ss_pred hcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCC
Q 000845 1098 NLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174 (1255)
Q Consensus 1098 Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~T 1174 (1255)
|+.... ..+.++..+ .+.+..+ ++..+++.+ ..||+|||||++||||++++|+++||||||
T Consensus 69 nl~~~~~~~~~~~~~~~~-----~~~~~~~-------l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 69 NARMMASLYGLDGDEFSH-----FCYQLTQ-------LEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred HHHHHHHHcCCCHHHHHH-----HHHHHhC-------hhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 997432 223333322 0222222 333445555 359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1175 ASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1175 S~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
+++|+.+.+.+.+.+.+..+++|+|++||+++.+.. ||+|++|++|++++.|+-+++.+
T Consensus 133 ~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 133 YTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 999999999999988765667899999999999975 99999999999999999888754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=301.79 Aligned_cols=163 Identities=29% Similarity=0.451 Sum_probs=136.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM---------- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~---------- 507 (1255)
.++++|++|+|+. +++|+|+||++++|++++|+|||||||||||++|.|.++|.+| .|+..
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3688999999983 5899999999999999999999999999999999999999998 12211
Q ss_pred --CCCC------------------------------Ccccc-------------ccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 508 --LPFG------------------------------DLTQI-------------GERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 508 --lp~g------------------------------d~T~i-------------Ge~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
+|+. |...| ...-..|||||||||.|||||.++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 1111 11111 12346799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCc-cccCCEEEEEeCCEEEEecChhHHhh
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGA--LSKKTVLLVTHQVDF-LPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~--l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|+|||||||+||....-.+.+- ++.+ .+|+|+|+|+|++++ +.+||++++|++|+++.+|+++|.+.
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~l-l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLEL-LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999998888754 4443 358999999999987 57899999999999999999998764
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=273.05 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=174.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCc--------
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT-------- 1089 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~-------- 1089 (1255)
..+.+.|||+++.|+.+||+|.||||||||++.|.|+++|++|+|.+||.++.-=+...--++|-+|+|||.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 358999999999999999999999999999999999999999999999999877666666678999999995
Q ss_pred ---cCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC
Q 000845 1090 ---LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166 (1255)
Q Consensus 1090 ---Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ 1166 (1255)
++++.+|-|-+.-.+...+.|.+ .|+.+||. |+--+. ....||.|||||+||||||+-+|+
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~------TL~~VGL~------Pdhan~----~~~~la~~QKQRVaLARALIL~P~ 169 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFE------TLRMVGLL------PDHANY----YPHMLAPGQKQRVALARALILRPK 169 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHH------HHHHhccC------cccccc----chhhcCchhHHHHHHHHHHhcCCc
Confidence 33444444444333344556666 78888874 321111 124699999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcCC-hHHHHH
Q 000845 1167 ILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD-SLFAQL 1242 (1255)
Q Consensus 1167 ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~-~~f~~l 1242 (1255)
|+|-|||-.+||......+.+..-+.. .|-.-|.|+.++-.|++ +|.|+||++|+++|.|++.++++.|. ..-++|
T Consensus 170 iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRl 249 (267)
T COG4167 170 IIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRL 249 (267)
T ss_pred EEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHH
Confidence 999999999999999988877765432 47789999999999998 89999999999999999999999864 355666
Q ss_pred HHHH
Q 000845 1243 VKEY 1246 (1255)
Q Consensus 1243 ~~~~ 1246 (1255)
++.+
T Consensus 250 ieSh 253 (267)
T COG4167 250 IESH 253 (267)
T ss_pred HHHH
Confidence 6654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=299.42 Aligned_cols=166 Identities=30% Similarity=0.419 Sum_probs=138.9
Q ss_pred EEEEeeEEEecCC--CCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCCCc---
Q 000845 445 IFIKSADLSWEAD--LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGDL--- 513 (1255)
Q Consensus 445 i~~~~~~f~w~~~--~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~gd~--- 513 (1255)
|++++++..|... +..++|+|+||+|++||+.+|+|.+|+|||||+++|.+.-.|++| .|+..++....
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 234689999999999999999999999999999999999999998 23322221111
Q ss_pred ---------------------------------------------------cccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 514 ---------------------------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 514 ---------------------------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
-.-+....+|||||||||+|||||..+|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 01134568999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGA--LSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|+|.|||||||||+|.+.|.+- +..+ ..|-|+++|||.++.++ -||++.||++|+++++|+..++...
T Consensus 162 iLL~DEaTSALDP~TT~sIL~L-L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 162 ILLCDEATSALDPETTQSILEL-LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred EEEecCccccCChHHHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999754 4332 24899999999999997 5899999999999999999988654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=290.20 Aligned_cols=167 Identities=32% Similarity=0.533 Sum_probs=137.8
Q ss_pred eEEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc---c---------------
Q 000845 444 SIFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM---D--------------- 504 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~---D--------------- 504 (1255)
.++++|.++.|+... ..++|+||||++.+||..+|+|++|||||||.++|+|..+|.+|. |
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998643 125999999999999999999999999999999999999999981 0
Q ss_pred -cCC----------------------C-CCCC----------ccccc-------cCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 505 -LKM----------------------L-PFGD----------LTQIG-------ERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 505 -i~~----------------------l-p~gd----------~T~iG-------e~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
+.. + ++|. .+.|| .....|||||||||||||||..+|++
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl 162 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE
Confidence 000 0 0010 01122 35788999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcccc-CCEEEEEeCCEEEEecChhHHhhc
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPA-FDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+||||||||||+.+...|++ ++..+. ++-|.|+|||++..+.+ ||+|+||++|++++.++-+++...
T Consensus 163 LIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 163 LILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred EEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999984 554444 36699999999999875 799999999999999999888754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=284.92 Aligned_cols=168 Identities=36% Similarity=0.528 Sum_probs=142.4
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCCC---
Q 000845 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGD--- 512 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~gd--- 512 (1255)
+..|+++++++++.. +.+|+|+||+|++||+++|+||+||||||||++|+|.++|.+| .|+..++..+
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 567999999999964 4799999999999999999999999999999999999999998 2332222111
Q ss_pred -----------------cc-----------------------------ccccCC-------CcCChHHHHHHHHHHHHcc
Q 000845 513 -----------------LT-----------------------------QIGERG-------VNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 513 -----------------~T-----------------------------~iGe~G-------~~LSGGQkqRIaLARAly~ 539 (1255)
.| .||-+| ..||||.|.|+|||||+..
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 11 244444 5899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhcch
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVTSQ 613 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~~~ 613 (1255)
||+|+++|||||+|||.++. .|.++|..+.+ +-|+|+|||+++.+. -||+|+++.||+|+..|+++|+.+.+.
T Consensus 163 dPell~~DEPtsGLDPI~a~-~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAG-VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred CCCEEEecCCCCCCCcchHH-HHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999975 66888866543 899999999999875 569999999999999999999986543
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=280.60 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=170.9
Q ss_pred CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCcc--C-
Q 000845 1015 PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL--F- 1091 (1255)
Q Consensus 1015 ~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~L--f- 1091 (1255)
+..+++|+++|++|+.||.|-|+|.||||||||++.+.|-+.|++|+|.|||+|+.+++.+.--..++-|+|||.. +
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 3456799999999999999999999999999999999999999999999999999999999988899999999963 4
Q ss_pred CCchhhhcccCCC------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCC
Q 000845 1092 SGSVRYNLDPLSQ------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR 1165 (1255)
Q Consensus 1092 ~gTIr~Nl~~~~~------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~ 1165 (1255)
+-||.||+..... .+.. +. .-.+....+.+..++.||.-.++..-.-|||||||-++|+-|.+++|
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~-ln-------~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p 167 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSA-LN-------ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP 167 (263)
T ss_pred cccHHHHHHHHHhcCcccccchh-hh-------HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC
Confidence 3499999963211 1110 00 11223345566777888877777777789999999999999999999
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhc-CEEEEEeCCEEEEEc
Q 000845 1166 QILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDC-NMVLSMSDGKLVEYD 1226 (1255)
Q Consensus 1166 ~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~-DrI~vl~~G~ive~G 1226 (1255)
+||+|||=|++|||.+.+.|++.-.+.. .+-|.++|||.++...+| +|.++|++|+||-.-
T Consensus 168 kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999887766543 346999999999998875 999999999999653
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=286.35 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=173.9
Q ss_pred EEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCC----CCChHHhhcccEEE
Q 000845 1009 LQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT----TIGLYDLRSNLGII 1084 (1255)
Q Consensus 1009 vs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~----~i~~~~lR~~i~~v 1084 (1255)
++|+++-+. .+| +++|..+.--.+||-|+||||||||++++.|+..|++|.|.+||.-+. .+.+..-|++||||
T Consensus 4 ~~~~~~lG~-~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV 81 (352)
T COG4148 4 LNFRQRLGN-FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81 (352)
T ss_pred EehhhhcCc-eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence 445554332 234 688998888899999999999999999999999999999999997553 44555568999999
Q ss_pred ccCCccCCC-chhhhcccCCCCCh-HHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHc
Q 000845 1085 PQDPTLFSG-SVRYNLDPLSQFTD-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1085 pQdp~Lf~g-TIr~Nl~~~~~~sd-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL 1162 (1255)
+||.-||+- |+|.||.+....++ ++.-+ +....|+....+..| ..||||||||+||+||||
T Consensus 82 FQDARLFpH~tVrgNL~YG~~~~~~~~fd~------iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALL 144 (352)
T COG4148 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQ------LVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALL 144 (352)
T ss_pred eeccccccceEEecchhhhhcccchHhHHH------HHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHh
Confidence 999999976 99999997654442 33333 555666666666665 479999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhcC
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 1235 (1255)
.+|++|+||||.|+||....++|.-.|++..+ +--++.|||.++.+.. +|+|++|++|+|...|.-+|.++++
T Consensus 145 t~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 145 TAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred cCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999999999999999888887765 3579999999999977 9999999999999999999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=281.46 Aligned_cols=165 Identities=28% Similarity=0.425 Sum_probs=139.6
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC-----------cccCC---
Q 000845 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-----------MDLKM--- 507 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-----------~Di~~--- 507 (1255)
...++++|.++.|.. +.+|+|||++|++++++|++||+||||||||+++.+..+...| .|+..
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 356889999999974 4799999999999999999999999999999999998887664 11110
Q ss_pred ------------------CC-------------CCCc----------------------cccccCCCcCChHHHHHHHHH
Q 000845 508 ------------------LP-------------FGDL----------------------TQIGERGVNLSGGQKQRIQLA 534 (1255)
Q Consensus 508 ------------------lp-------------~gd~----------------------T~iGe~G~~LSGGQkqRIaLA 534 (1255)
+| +|.. -.+.+.+..|||||+||+|||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 11 0100 113467889999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCcccc-CCEEEEEeCCEEEEecChhHHhh
Q 000845 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPA-FDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 535 RAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++.... +|++..+-+|+++|.|+-+++..
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 999999999999999999999998888 8888888888999999999998765 59999999999999999888764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=296.63 Aligned_cols=230 Identities=20% Similarity=0.351 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeC--CCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CCCEEEEcCEeCCCCChH
Q 000845 1003 KVEIYDLQIRYR--PNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP-----TGGKIIIDGLDITTIGLY 1075 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~--~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~-----~~G~I~idG~di~~i~~~ 1075 (1255)
-++++|++++|. .+...++++|||+|++||.+|+||.||||||-..+.++|+++. -+|+|.+||.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478999999885 3345699999999999999999999999999999999999874 479999999999999988
Q ss_pred Hhhc----ccEEEccCCcc-CC--Cchhhhc----ccCCC----CChHHHHhccCchhHHHhccHHHHHHhhhcCccchh
Q 000845 1076 DLRS----NLGIIPQDPTL-FS--GSVRYNL----DPLSQ----FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV 1140 (1255)
Q Consensus 1076 ~lR~----~i~~vpQdp~L-f~--gTIr~Nl----~~~~~----~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v 1140 (1255)
.+|. +|++|+|+|.- ++ -||-..| ..... ...+++.+ .|+.+|+.+--.. +
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~le------lL~~VgI~~p~~r--------l 151 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALE------LLELVGIPEPEKR--------L 151 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHH------HHHHcCCCchhhh--------h
Confidence 8875 79999999962 11 1332222 11111 12233333 5666666443211 2
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhh-cCEEEEE
Q 000845 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSM 1217 (1255)
Q Consensus 1141 ~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl 1217 (1255)
..-...||||||||+.||-||..+|++||-||||.+||.....+|.+.|++.. .+..+++|||+|..++. +|||+||
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM 231 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM 231 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence 22346799999999999999999999999999999999999999999998765 37899999999999987 8999999
Q ss_pred eCCEEEEEcChhHHhhcCChHHHHHHHHH
Q 000845 1218 SDGKLVEYDEPKKLLRRQDSLFAQLVKEY 1246 (1255)
Q Consensus 1218 ~~G~ive~G~~~eLl~~~~~~f~~l~~~~ 1246 (1255)
.+|+|+|.|+.++|.++|.-.|.+++-+.
T Consensus 232 ~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 232 QHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred eccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 99999999999999999988898776554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=306.63 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=94.5
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCC---CeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRR---QILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMV 1214 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~---~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI 1214 (1255)
.+|.....|||||.||+-||.-|.+++ -++||||||.+|-.+--+.+.++|.++. +|.|||+|-|.|+.|+.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 457777899999999999999999987 8999999999999999999988888765 689999999999999999999
Q ss_pred EEE------eCCEEEEEcChhHHhhcCChHHHHHHHH
Q 000845 1215 LSM------SDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1215 ~vl------~~G~ive~G~~~eLl~~~~~~f~~l~~~ 1245 (1255)
+=| +.|+|+..|+|+|+.+.++|.=.+.+++
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 998 4699999999999998776655555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=291.98 Aligned_cols=163 Identities=36% Similarity=0.548 Sum_probs=133.9
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc---------------ccCC
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM---------------DLKM 507 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~---------------Di~~ 507 (1255)
..|+++|++|+|... ++|+||||++++|++++|+||||||||||+++|+|.++|.+|. -+..
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 368999999999753 5999999999999999999999999999999999999999981 0122
Q ss_pred CCCCC--------------------------------cc-------cc------ccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 508 LPFGD--------------------------------LT-------QI------GERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 508 lp~gd--------------------------------~T-------~i------Ge~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
.|+.- .- .| ...-..|||||+|||-|||||.++|+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ 159 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD 159 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence 22210 00 01 12346799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhh
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
+++|||||+++|+.+++.++ +++..+. +|+|+++|||+++.+ .++|+|+.|++ ++...|+.++...
T Consensus 160 lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred EEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 99999999999999987765 6676654 399999999999986 57899999975 5778899888764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=278.01 Aligned_cols=155 Identities=38% Similarity=0.589 Sum_probs=144.4
Q ss_pred EEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEE
Q 000845 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGII 1084 (1255)
Q Consensus 1005 ~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~v 1084 (1255)
+++|++++|+. .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.++.......+++.++|+
T Consensus 1 ~~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred CeEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 36899999954 3599999999999999999999999999999999999999999999999999887777788899999
Q ss_pred ccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC
Q 000845 1085 PQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR 1164 (1255)
Q Consensus 1085 pQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~ 1164 (1255)
|| ||+||+||++||||++.+
T Consensus 79 ~q------------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 79 PQ------------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred ee------------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 99 999999999999999999
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEeccCchhhhh-cCEEEEEeCCE
Q 000845 1165 RQILVLDEATASIDNATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGK 1221 (1255)
Q Consensus 1165 ~~ILiLDE~TS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1221 (1255)
|++++|||||++||.++...+.+.+++..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999987644 5899999999999988 69999999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=281.66 Aligned_cols=154 Identities=26% Similarity=0.297 Sum_probs=135.8
Q ss_pred EEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEcc
Q 000845 1007 YDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQ 1086 (1255)
Q Consensus 1007 ~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQ 1086 (1255)
.||+++|.. ..+++++ |+|++||++||+||||||||||+++|.|+++|++|+|.+||.+ ++++||
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 578999953 4689884 9999999999999999999999999999999999999999964 788888
Q ss_pred CCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCC
Q 000845 1087 DPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166 (1255)
Q Consensus 1087 dp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ 1166 (1255)
++. ||||||||++||||++++|+
T Consensus 69 ~~~---------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 69 YID---------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred cCC---------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 642 99999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHc-C-CcEEEEeccCchhhhh-cCEEEEEeCCEEEEE--cChhHHh
Q 000845 1167 ILVLDEATASIDNATDSILQNTIRREF-A-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEY--DEPKKLL 1232 (1255)
Q Consensus 1167 ILiLDE~TS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~--G~~~eLl 1232 (1255)
+++|||||++||+++.+.+.+.+++.. + ++|+|+|||+++.+.. ||+|++|+++-.+.. |.|..-+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999999999999999999998764 3 3899999999999986 999999998766533 6665433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-32 Score=268.15 Aligned_cols=220 Identities=20% Similarity=0.352 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC-EeCCCCChHHh-hcc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG-LDITTIGLYDL-RSN 1080 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG-~di~~i~~~~l-R~~ 1080 (1255)
.++++||++++. +-.+|+|+||+|.|||-=.|+||||+||||++..+.|-..|+.|+++++| .|++.++-+.. |..
T Consensus 5 iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 478999999995 34599999999999999999999999999999999999999999999999 99999998875 778
Q ss_pred cEEEccCCccCCC-chhhhcccCCCCChHHHHhc-cCc---------hhHHHhccHHHHHHhhhcCccchhcCCCCCCCh
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEV-TIP---------SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149 (1255)
Q Consensus 1081 i~~vpQdp~Lf~g-TIr~Nl~~~~~~sd~ei~~~-~~~---------~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1149 (1255)
||-=+|.|..|.. |++|||+..... +..+|.. ..+ .++|...+|.+ ....-..+||.
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~-~k~v~a~L~~r~~~~e~~ride~La~igL~~-----------~~~~~A~~LSH 150 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNR-DKSVFASLFARLRAEERRRIDELLATIGLGD-----------ERDRLAALLSH 150 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcC-CcchHHHhhhhcChhHHHHHHHHHHHcccch-----------hhhhhhhhhcc
Confidence 9999999999976 999999643211 1112210 000 01444444433 33334467999
Q ss_pred hHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcCh
Q 000845 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1150 GQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1228 (1255)
||||+|-|+-.+.++|++|+||||++++-.+..+..-+.+++....|++++|-|++.+++. +|+|-||.+|.|...|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999666666677778888889999999999999987 899999999999999999
Q ss_pred hHHhhcCC
Q 000845 1229 KKLLRRQD 1236 (1255)
Q Consensus 1229 ~eLl~~~~ 1236 (1255)
+++-++++
T Consensus 231 d~v~~dp~ 238 (249)
T COG4674 231 DEVQNDPK 238 (249)
T ss_pred HHhhcCcc
Confidence 99987753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=285.03 Aligned_cols=155 Identities=34% Similarity=0.459 Sum_probs=126.9
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC---------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l--------- 508 (1255)
++++|++..|.... ..++|+++||+|++||+++|+||+||||||||+.|-|...|++| .|+..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 45788888886543 24799999999999999999999999999999999999999988 122111
Q ss_pred --------------------------------CCCCc--------cc--cc-----cCCCcCChHHHHHHHHHHHHccCC
Q 000845 509 --------------------------------PFGDL--------TQ--IG-----ERGVNLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 509 --------------------------------p~gd~--------T~--iG-----e~G~~LSGGQkqRIaLARAly~~~ 541 (1255)
+.+.. .. ++ .....||||||||||+|||+..+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 11100 00 12 346799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhh--cCCcEEEEEccCCCccccCCEEEEEeCCEEE
Q 000845 542 DIYLLDDPFSALDAKTAKFLFTEYVMGA--LSKKTVLLVTHQVDFLPAFDSILLISGGEII 600 (1255)
Q Consensus 542 ~ilLLDdp~SaLD~~~~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~ 600 (1255)
+|+|.||||.+||.++++.|++ ++..+ .+|+|+|+|||+......||+++.|.||++.
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999998875 44443 3489999999999999999999999999853
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=275.20 Aligned_cols=210 Identities=20% Similarity=0.320 Sum_probs=170.5
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCCh-HHhhcc
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-YDLRSN 1080 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~-~~lR~~ 1080 (1255)
--|+++||+++|. ++++|+|||++|+|||+.+|+|+||||||||++++.+.++|++|.+.+-|...-+.+. .++|++
T Consensus 30 ~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 3599999999994 4579999999999999999999999999999999999999999999999999988888 999999
Q ss_pred cEEEccCCc---cCCCchhhhcc--------cCC-CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1081 LGIIPQDPT---LFSGSVRYNLD--------PLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1081 i~~vpQdp~---Lf~gTIr~Nl~--------~~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
||+|+-+-. .=.-++||-+. .+. ..++++..+ ....++.+++.+.. +..=..||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~---a~~lle~~g~~~la-----------~r~~~~LS 173 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA---AQWLLELLGAKHLA-----------DRPFGSLS 173 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHH---HHHHHHHcchhhhc-----------cCchhhcC
Confidence 999975322 12335555442 111 344444322 12255666655432 12224699
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC---CcEEEEeccCchhhhh-cCEEEEEeCCEEEE
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA---NCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1224 (1255)
.|||||+-|||||+++|++|||||||++||....+.+.+.+.+... +.|+|+|||+.+.+.. +++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999888887653 5689999999999977 59999999999998
Q ss_pred EcC
Q 000845 1225 YDE 1227 (1255)
Q Consensus 1225 ~G~ 1227 (1255)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=278.22 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=132.2
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhh
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRY 1097 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~ 1097 (1255)
.++|+|+||+|++||+++|+||||||||||++++++ ++|++.++|.. ... .|+++++++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 458999999999999999999999999999999963 69999998762 221 2456888887
Q ss_pred hcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccC--CCeEEEecCCC
Q 000845 1098 NLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRR--RQILVLDEATA 1175 (1255)
Q Consensus 1098 Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~--~~ILiLDE~TS 1175 (1255)
.+ +++..++.+. .......+||+|||||++||||++++ |+++||||||+
T Consensus 68 -------------~~------~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 -------------LQ------FLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred -------------HH------HHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 12 5556554321 13334568999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhcCEEEEEeC------CEEEEEc
Q 000845 1176 SIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSMSD------GKLVEYD 1226 (1255)
Q Consensus 1176 ~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~------G~ive~G 1226 (1255)
+||+++.+.+.+.|++.. .++|||+|||+++.+..||+|++|++ |++||.|
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999999999998865 47999999999999888999999955 6666654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-32 Score=303.97 Aligned_cols=167 Identities=31% Similarity=0.414 Sum_probs=140.1
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------ccc-----------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL----------- 505 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di----------- 505 (1255)
..++++|++.+|. +.++++|+||+|++||++++.|||||||||+|++|.|+..|++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4789999999998 35899999999999999999999999999999999999999998 233
Q ss_pred ------CCCCCC---------Cc-------cc-----------c------ccCCCcCChHHHHHHHHHHHHccCCCEEEE
Q 000845 506 ------KMLPFG---------DL-------TQ-----------I------GERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 506 ------~~lp~g---------d~-------T~-----------i------Ge~G~~LSGGQkqRIaLARAly~~~~ilLL 546 (1255)
+.||+= -. .+ | ..+...|||||||||||||||..+|+++||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 333320 00 00 1 235689999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCc-cccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDF-LPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 547 Ddp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~-l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
|||+||||.+.++++-.++..... .|.|.|+|||+.+. +..+|+|+||++|+|.+.|+++|+....
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999888655543222 39999999999875 6788999999999999999999997543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=332.33 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=157.2
Q ss_pred EEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEE
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+++|+. ..+|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.++|.. +++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 789999999953 469999999999999999999999999999999999999999999999842 4888
Q ss_pred EccCCccCCCchhhhcccC----CCCCh-----------HHHHhccCchhHHHh-------ccHHHHHHhhhcCcc-chh
Q 000845 1084 IPQDPTLFSGSVRYNLDPL----SQFTD-----------QEIWEVTIPSQVLEK-------CQLREVIQEKKEGLD-SLV 1140 (1255)
Q Consensus 1084 vpQdp~Lf~gTIr~Nl~~~----~~~sd-----------~ei~~~~~~~~al~~-------~~l~~~i~~lp~gld-t~v 1140 (1255)
++|++..+..|+.+++... ...+. ..+... ....+. ..+.+.+..+ |++ ...
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~ 143 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATI---HGKLDAIDAWTIRSRAASLLHGL--GFSNEQL 143 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHH---HHHHHhcCCcchHHHHHHHHHhC--CCCchhh
Confidence 8887655555555444210 00000 000000 000000 0111222222 332 122
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeC
Q 000845 1141 VQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSD 1219 (1255)
Q Consensus 1141 ~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~ 1219 (1255)
.....+||||||||++|||||+.+|+||||||||++||+++...+.+.|++. +.|||+|||+++.+.. ||+|++|++
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 3344679999999999999999999999999999999999999999999874 5799999999999976 999999999
Q ss_pred CEEEE-EcChhHHhh
Q 000845 1220 GKLVE-YDEPKKLLR 1233 (1255)
Q Consensus 1220 G~ive-~G~~~eLl~ 1233 (1255)
|++++ .|++.....
T Consensus 222 G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 222 QSLFEYTGNYSSFEV 236 (638)
T ss_pred CEEEEecCCHHHHHH
Confidence 99975 577776654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-32 Score=278.80 Aligned_cols=164 Identities=34% Similarity=0.484 Sum_probs=138.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCC------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFG------ 511 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~g------ 511 (1255)
.|+++|++..||.. +.+|+||||+|++||+++|+|++||||||||++|.|..++++| .++..++..
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 58999999999843 5899999999999999999999999999999999999999998 111111110
Q ss_pred -------------------------------------------C-------ccccc------cCCCcCChHHHHHHHHHH
Q 000845 512 -------------------------------------------D-------LTQIG------ERGVNLSGGQKQRIQLAR 535 (1255)
Q Consensus 512 -------------------------------------------d-------~T~iG------e~G~~LSGGQkqRIaLAR 535 (1255)
| .+.+| .+..+|||||+|||+|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 0 01122 366899999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhh-hcCCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHh
Q 000845 536 ALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMG-ALSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 536 Aly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~-~l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
||+++|+|+|-|||+++|||.+++++++.+.+- ...|.|+|+.-|++++. ++||||+-|++|+|++.|+.+|+.
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 999999999999999999999999997655432 33589999999999986 589999999999999999998863
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=275.28 Aligned_cols=210 Identities=24% Similarity=0.439 Sum_probs=178.5
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.+++++|+.+|. ...|++|+||+++||+..|++|+|||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 478999999995 3569999999999999999999999999999999999999999999999999875 4688999
Q ss_pred EEccCCccCCC-chhhhcccCCC---CChHHHHhccCchhHHHhccHHHHHHhhh--cCccchhcCCCCCCChhHHHHHH
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ---FTDQEIWEVTIPSQVLEKCQLREVIQEKK--EGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~---~sd~ei~~~~~~~~al~~~~l~~~i~~lp--~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
|+|-+--|+.. |+.|-|.++.. ...+|+.. .+..+.+++. +.....| ..||-|.+|++.
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----------~~~~wLer~~i~~~~~~kI----k~LSKGnqQKIQ 140 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----------KLQAWLERLEIVGKKTKKI----KELSKGNQQKIQ 140 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----------HHHHHHHhccccccccchH----HHhhhhhhHHHH
Confidence 99999999975 99999876542 44454432 1233333321 1122222 469999999999
Q ss_pred HHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhh
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1233 (1255)
+--|++++|.++|||||.|+|||.+.+.+.+.+.+.. .|.|||+-+||++.+.. ||+++.|++|+.|-+|+-++..+
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999999999999999999998765 58999999999999987 99999999999999999888765
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=293.43 Aligned_cols=172 Identities=33% Similarity=0.508 Sum_probs=142.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------cc-------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DL------------- 505 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di------------- 505 (1255)
++++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|.++|.+|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 247999999999999999999999999999999999999998881 10
Q ss_pred ------------------------------------------CCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 506 ------------------------------------------KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 506 ------------------------------------------~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
..+|.|..+..+..+.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 01111222233456789999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~~l 618 (1255)
+||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++....+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999987775 4555555689999999999998889999999999999999999887665555443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-32 Score=263.52 Aligned_cols=161 Identities=34% Similarity=0.468 Sum_probs=128.7
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCCC------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGD------ 512 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~gd------ 512 (1255)
+.++++.|+|...+ -..+++|++||.++|+||+||||||||++|.|+..|.+| .|....|..+
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 45678889987543 247899999999999999999999999999999999998 1211111100
Q ss_pred ------------------------------c-------cccc------cCCCcCChHHHHHHHHHHHHccCCCEEEEeCc
Q 000845 513 ------------------------------L-------TQIG------ERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 513 ------------------------------~-------T~iG------e~G~~LSGGQkqRIaLARAly~~~~ilLLDdp 549 (1255)
. ..+| .-..+|||||||||||||++.++.+|+|||||
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP 156 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP 156 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc
Confidence 0 1122 23468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 550 FSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 550 ~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
||||||.-+.... .++..+. ++.|+++|||+++.+. .+|+++++++|+|+++|..+++...
T Consensus 157 FsALdP~LR~eMl-~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 157 FSALDPALRAEML-ALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred hhhcCHHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999876654 4444433 5889999999999865 5799999999999999999888754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=295.55 Aligned_cols=164 Identities=32% Similarity=0.436 Sum_probs=137.2
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCCCc----
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGDL---- 513 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~gd~---- 513 (1255)
.|+++|++.+|... .+|+|+||+|++||+++++|||||||||||++|.|..+|++| .|+..+|..+.
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999753 299999999999999999999999999999999999999998 23333322211
Q ss_pred ---------------------------------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 514 ---------------------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 514 ---------------------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
-....+...||||||||||||||+.++|+++||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 11234678999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|+|.||++....+-.++ ..+. -+.|+|.|||+.... ..+|+|+||++|+|.+.|++.|+..+
T Consensus 160 PlSnLDa~lR~~mr~ei-~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 160 PLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred chhHhhHHHHHHHHHHH-HHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999987765444 3332 378999999997664 57899999999999999999998754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=291.03 Aligned_cols=171 Identities=40% Similarity=0.644 Sum_probs=145.5
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc-----------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~----------------- 503 (1255)
....++++|+++.+ +++|+|+||++++|++++|+|+||||||||+++|+|.++|.+|.
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 45679999999962 36999999999999999999999999999999999999998881
Q ss_pred ------------------------------ccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCC
Q 000845 504 ------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSAL 553 (1255)
Q Consensus 504 ------------------------------Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaL 553 (1255)
.+..+|.+..|.+++++.+||||||||++||||++++|+++||||||++|
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 01122344455666777899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHHH
Q 000845 554 DAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQ 616 (1255)
Q Consensus 554 D~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~~ 616 (1255)
|+.+.+.+.+.++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++.....++.
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 999988777666655556899999999999998899999999999999999998875444443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=280.75 Aligned_cols=163 Identities=36% Similarity=0.476 Sum_probs=133.5
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------c---ccCCCCCCC---
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------M---DLKMLPFGD--- 512 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~---Di~~lp~gd--- 512 (1255)
|.++|++..|+. .++++|||++|+.||++++.|||||||||||++|.|...|+.| + |...++..+
T Consensus 3 i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 3 IRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred eeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 677888888875 3689999999999999999999999999999999999999999 1 322221111
Q ss_pred -----------------------------------cccc------------c-cCCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 513 -----------------------------------LTQI------------G-ERGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 513 -----------------------------------~T~i------------G-e~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
.+.+ + .....||||||||||||||+..+|++|
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL 159 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL 159 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE
Confidence 0111 1 235789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCc-cccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDF-LPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~l~~-l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
||||||+|||+++.+.+ ++-+..+. + +.|+|+|||+.++ ++.||+|++|++|+|...|+.+|....
T Consensus 160 LLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 160 LLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred eecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 99999999999998766 44443332 3 8899999999987 467899999999999999999998643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=288.57 Aligned_cols=167 Identities=34% Similarity=0.533 Sum_probs=139.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------cc-------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DL------------- 505 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di------------- 505 (1255)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|.|.++|.+|. ++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 36889999997543357999999999999999999999999999999999999998881 10
Q ss_pred ------------------------------------------CCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 506 ------------------------------------------KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 506 ------------------------------------------~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
..+|.|..+..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 01122223334445678999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
+||||||++||+.+.+.+. +++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~-~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQ-EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 9999999999999988775 4555544789999999999998889999999999999999988776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=324.03 Aligned_cols=213 Identities=22% Similarity=0.288 Sum_probs=156.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.. .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3889999999953 469999999999999999999999999999999999999999999998731 267
Q ss_pred EEccCCcc-CCCchhhhcccCC------------------CCChHHHHhccC-chhHHHh-------ccHHHHHHhhhcC
Q 000845 1083 IIPQDPTL-FSGSVRYNLDPLS------------------QFTDQEIWEVTI-PSQVLEK-------CQLREVIQEKKEG 1135 (1255)
Q Consensus 1083 ~vpQdp~L-f~gTIr~Nl~~~~------------------~~sd~ei~~~~~-~~~al~~-------~~l~~~i~~lp~g 1135 (1255)
+++|++.. ..+++.+++.... ..+.++...... ....+.. ..+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 78887642 2356665542100 000011000000 0000000 0111222222 3
Q ss_pred ccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEE
Q 000845 1136 LDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMV 1214 (1255)
Q Consensus 1136 ldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI 1214 (1255)
++ .......||||||||++|||||+.+|+||||||||++||+++.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 32 12334579999999999999999999999999999999999999999999876 3699999999999976 8999
Q ss_pred EEEeCCEEEE-EcChhHHhhc
Q 000845 1215 LSMSDGKLVE-YDEPKKLLRR 1234 (1255)
Q Consensus 1215 ~vl~~G~ive-~G~~~eLl~~ 1234 (1255)
++|++|+++. .|++.+.+..
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 9999999986 4888876553
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=287.29 Aligned_cols=164 Identities=34% Similarity=0.588 Sum_probs=139.4
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------c-------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------D------------- 504 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------D------------- 504 (1255)
.++++|++++|+.. +++++|+||++++|++++|+||||||||||+++|.|..+|.+|. +
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 47899999999632 36999999999999999999999999999999999999998880 0
Q ss_pred ------------------------------------------cCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 505 ------------------------------------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 505 ------------------------------------------i~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
++.+|.|..+..+....+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 01122233344455668999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
++||||||++||+.+.+.+. +++..+.+++|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999988775 55655556899999999999988899999999999999998877653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=300.43 Aligned_cols=166 Identities=31% Similarity=0.428 Sum_probs=136.9
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCC-------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPF------- 510 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~------- 510 (1255)
|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|.|..+|.+| .|+..++.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996422 24799999999999999999999999999999999999999988 22211110
Q ss_pred --------C-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 511 --------G-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 511 --------g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
. ..| ........|||||||||+||||+..+|++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000 01234578999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+||||||||||+.+.+.+. +++..+. .+.|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 162 LLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 162 LLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999998886 4554443 3899999999999985 5899999999999999999998643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=289.27 Aligned_cols=169 Identities=32% Similarity=0.510 Sum_probs=146.0
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc-----------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM----------------- 503 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~----------------- 503 (1255)
..+.++++|++++|+.. ..++|+|+||++++|++++|+|++|||||||+++|+|+++|.+|.
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 34679999999999753 247999999999999999999999999999999999999998880
Q ss_pred -------------------------------------------ccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccC
Q 000845 504 -------------------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQD 540 (1255)
Q Consensus 504 -------------------------------------------Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~ 540 (1255)
.+..+|.|.+|.+++.+.+||||||||++||||++++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 0112344566667778889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 541 RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 541 ~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|+++||||||++||+++.+.+ .+++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 175 p~llllDEPt~gLD~~~~~~l-~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 175 SSILIMDEATASIDMATENIL-QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHH-HHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999997666 4556555568999999999999988999999999999999999988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=262.52 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCCEEEEcCEeCCCCChHH-hhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL--VEPTGGKIIIDGLDITTIGLYD-LRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl--~~~~~G~I~idG~di~~i~~~~-lR~ 1079 (1255)
-++++|++++-... +.+|++||++|++||..+|.||||||||||.++|+|. |++++|+|.+||.||.++++++ -|.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47899999887532 4699999999999999999999999999999999996 5889999999999999999987 577
Q ss_pred ccEEEccCCccCCC-chhhhcccCCC----------CChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCC
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPLSQ----------FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWS 1148 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~~~----------~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1148 (1255)
.|.+-.|.|.=++| |+++-|..... ...+++.+ +++..++++.. ++..|.+ .||
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e------~~~~l~~~~~~------l~R~vN~---GFS 146 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKE------KAELLGLDEEF------LERYVNE---GFS 146 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHH------HHHHcCCCHHH------hhcccCC---CcC
Confidence 89999999999999 88877742110 01223333 66677766522 3344444 499
Q ss_pred hhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEeccCchhhhhc--CEEEEEeCCEEEEE
Q 000845 1149 MGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDC--NMVLSMSDGKLVEY 1225 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~--DrI~vl~~G~ive~ 1225 (1255)
||||.|.-|+.+++-+|++.|||||-|+||..+-+.|-+.+++.. +++++++|||+-+.+... |+|.||-+|+|+..
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999998876 478999999998888764 99999999999999
Q ss_pred cChhHHhh
Q 000845 1226 DEPKKLLR 1233 (1255)
Q Consensus 1226 G~~~eLl~ 1233 (1255)
|.| ||..
T Consensus 227 G~~-el~~ 233 (251)
T COG0396 227 GDP-ELAE 233 (251)
T ss_pred CCH-HHHH
Confidence 999 7765
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=286.35 Aligned_cols=166 Identities=35% Similarity=0.558 Sum_probs=140.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc---------------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM--------------------- 503 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~--------------------- 503 (1255)
++++|++++|+... .++++|+||++++|++++|+||||||||||+++|.|.++|.+|.
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCC-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 46889999996432 37999999999999999999999999999999999999998880
Q ss_pred ----c------------------------------------cCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 504 ----D------------------------------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 504 ----D------------------------------------i~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
+ +..+|.|..+..+.+..+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 0 001122333445566789999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
+||||||++||+.+.+.+. +++..+.+++|+|++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQ-AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999987774 5666666789999999999998889999999999999999988876443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=258.26 Aligned_cols=156 Identities=28% Similarity=0.477 Sum_probs=132.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC----------------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------------------- 502 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G---------------------- 502 (1255)
|+|+|++..|+.. .++|+|+||+|++||++.++||+||||||||++|.++..|+.|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999875 5799999999999999999999999999999999999999999
Q ss_pred ------cccCCCCCCCc--------ccccc------------------------CCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 503 ------MDLKMLPFGDL--------TQIGE------------------------RGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 503 ------~Di~~lp~gd~--------T~iGe------------------------~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
+|...|++..- ..+|. -...||||+||||+||||+..+|+++
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 34444443210 11221 24789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccccC-CEEEEEeCCEEEEec
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLPAF-DSILLISGGEIIQAA 603 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~a-D~Iivl~~G~i~~~G 603 (1255)
|-||||-.|||..+..|+ +++..+ ..|.||+++||+.+.+... -+++.+++|+++...
T Consensus 160 lADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 160 LADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999886 556543 4699999999999999877 789999999998653
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=307.33 Aligned_cols=213 Identities=28% Similarity=0.413 Sum_probs=161.8
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccE
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|.++|++++|+ ..++|+|+||++.+|++||||||||+|||||+++|.|..+|++|+|.+++. -+++
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 488999999993 456999999999999999999999999999999999999999999998752 2699
Q ss_pred EEccCCccCCC-chhhhcccCCC-CC--hHHHHhccC------------chhHHHhcc---HHHHHHhhhcCc-----cc
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLSQ-FT--DQEIWEVTI------------PSQVLEKCQ---LREVIQEKKEGL-----DS 1138 (1255)
Q Consensus 1083 ~vpQdp~Lf~g-TIr~Nl~~~~~-~s--d~ei~~~~~------------~~~al~~~~---l~~~i~~lp~gl-----dt 1138 (1255)
|++|+|.+.++ |+++.+..... .. ..+..+... .....+..+ +..-+...-.|| ++
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~ 149 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccC
Confidence 99999999976 99888753211 00 011110000 000000000 011111111222 34
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEE
Q 000845 1139 LVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSM 1217 (1255)
Q Consensus 1139 ~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl 1217 (1255)
++ .+||||||.|++|||||+.+|+||+|||||++||.++-+-+.+-|.+ +++ |+|+|||+-+++.. |++|+-+
T Consensus 150 ~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 150 PV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 44 47999999999999999999999999999999999999999999985 466 99999999999988 9999999
Q ss_pred eCCEEEEE-cChhHHhhc
Q 000845 1218 SDGKLVEY-DEPKKLLRR 1234 (1255)
Q Consensus 1218 ~~G~ive~-G~~~eLl~~ 1234 (1255)
+.|++..+ |.++.-++.
T Consensus 224 d~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred cCCceeEecCCHHHHHHH
Confidence 99988765 566655543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=281.19 Aligned_cols=164 Identities=29% Similarity=0.456 Sum_probs=136.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC------CC---
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK------ML--- 508 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~------~l--- 508 (1255)
.++++|++|+|+.+ .++|+|+|+++++|+.++|+|+||||||||++.+.|.++|..|. ++. .+
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999876 58999999999999999999999999999999999999999982 111 00
Q ss_pred -----CCCCc---------------------------------ccc------ccCCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 509 -----PFGDL---------------------------------TQI------GERGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 509 -----p~gd~---------------------------------T~i------Ge~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
.+.|. ..+ .....+||||||||||||.+|..+|+++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 00000 011 1346799999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCcccc-CCEEEEEeCCEEEEecChhHHhh
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDFLPA-FDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~~-aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
+||||||+||+...+.+.+ .+..+. . ++|+|++||+++.+.. ||++++|++|+++.+|+++++..
T Consensus 161 iLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred EEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999988865 444443 3 6899999999998765 99999999999999999887764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=285.01 Aligned_cols=168 Identities=30% Similarity=0.529 Sum_probs=140.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cc--------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MD-------------- 504 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~D-------------- 504 (1255)
++++|++++|+.. +++|+|+||+|++|++++|+||||||||||+++|.|..+|.+| .+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 3688999999632 4699999999999999999999999999999999999999888 00
Q ss_pred -----------------------------------------cCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 505 -----------------------------------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 505 -----------------------------------------i~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
+..+|.|..|.++.+..+||||||||++||||++.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 012233444445556789999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhcchHH
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEF 615 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~~~~~ 615 (1255)
+||||||++||+.+.+.+. +++..+.+++|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 9999999999999987775 5555554589999999999998889999999999999999988876544333
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=281.30 Aligned_cols=159 Identities=34% Similarity=0.519 Sum_probs=138.0
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc--------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------------- 503 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-------------------- 503 (1255)
.++++|++++|+... +++|+|+||++++|++++|+|+||||||||+++|.|+++|.+|.
T Consensus 2 ~l~~~~l~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNL-PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCC-cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 478999999997432 47999999999999999999999999999999999999998880
Q ss_pred ----------------------------------------ccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 504 ----------------------------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 504 ----------------------------------------Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
.+..+|.|..|..+..+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 0112345556666778899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecC
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAAT 604 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~ 604 (1255)
+||||||++||+.+.+.+. +++..+.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999987665 55655556799999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=345.56 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=166.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC----CCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC-
Q 000845 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV----EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG- 1093 (1255)
Q Consensus 1019 ~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~----~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g- 1093 (1255)
.+|+|+|++++|||.+||+||||||||||+++|.|.. .|.+|+|.+||.++.+.. ...|+.++||+|++.+|+.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence 5899999999999999999999999999999999986 478999999999986554 3467789999999988875
Q ss_pred chhhhcccCC----------CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcC-CCCCCChhHHHHHHHHHHHc
Q 000845 1094 SVRYNLDPLS----------QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQ-DGANWSMGQRQLIGLGRVVL 1162 (1255)
Q Consensus 1094 TIr~Nl~~~~----------~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e-~G~~LSgGQrQrl~lARAlL 1162 (1255)
|++|||.+.. ..+.++..+. ....+++..+|. +-.||.+|+ ....||||||||++|||||+
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKH-IADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-HHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999997421 1222322110 001134444443 235677764 34579999999999999999
Q ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCc-hhhhh-cCEEEEEeCCEEEEEcChhHHh
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRI-ATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1163 ~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl-~ti~~-~DrI~vl~~G~ive~G~~~eLl 1232 (1255)
.+|+|++|||||++||+.+...+.+.|++..+ ++|+|+++|++ +.+.+ +|+|++|++|+++.+|+++++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999998753 78999999997 45654 9999999999999999998873
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=290.06 Aligned_cols=170 Identities=24% Similarity=0.372 Sum_probs=139.5
Q ss_pred CcceEEEEeeEEEecCCC--CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC-----
Q 000845 441 LEHSIFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----- 507 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~--~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----- 507 (1255)
.+..++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+| .++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 445799999999997432 24699999999999999999999999999999999999999888 11110
Q ss_pred -----------------------CCCC-C-----cc-----------------------------------ccccCCCcC
Q 000845 508 -----------------------LPFG-D-----LT-----------------------------------QIGERGVNL 523 (1255)
Q Consensus 508 -----------------------lp~g-d-----~T-----------------------------------~iGe~G~~L 523 (1255)
.++. + .| ..+..+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 0000 0 00 123456789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcc-ccCCEEEEEeCCEEEE
Q 000845 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQ 601 (1255)
Q Consensus 524 SGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~ 601 (1255)
|||||||++||||+..+|+++|||||||+||+.+.+.+. +++..+ .+++|+|+|||+++.+ ..||+|++|++|++++
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988776 455443 3589999999999977 5699999999999999
Q ss_pred ecChhHHhhc
Q 000845 602 AATYDHLLVT 611 (1255)
Q Consensus 602 ~G~~~el~~~ 611 (1255)
.|+++++...
T Consensus 257 ~g~~~~~~~~ 266 (320)
T PRK13631 257 TGTPYEIFTD 266 (320)
T ss_pred eCCHHHHhcC
Confidence 9999988654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=320.65 Aligned_cols=192 Identities=23% Similarity=0.275 Sum_probs=155.5
Q ss_pred EEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEE-----------EcCEeCCCCChHH
Q 000845 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII-----------IDGLDITTIGLYD 1076 (1255)
Q Consensus 1008 nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~-----------idG~di~~i~~~~ 1076 (1255)
+++.+|.++ ..+|++++ .+++||++||+||||||||||+++|.|+++|++|+|. ++|.|+.++....
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 488999643 35899999 9999999999999999999999999999999999998 9999886543211
Q ss_pred --hhcc----cEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChh
Q 000845 1077 --LRSN----LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1077 --lR~~----i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
.+.+ +.+++|.|.+|.+|+++|+.... ..+++.+ +++..++.+. +|..+ .+||||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~------~l~~l~l~~~-------~~~~~----~~LSgG 216 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDE------VVERLGLENI-------LDRDI----SELSGG 216 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHH------HHHHcCCchh-------hcCCh----hhCCHH
Confidence 1123 44555677788899999996321 1223333 6666666433 23333 479999
Q ss_pred HHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cCEEEEEeCC
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDG 1220 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G 1220 (1255)
||||++||||++++|++|+||||||+||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999987568999999999999976 8999999873
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=265.45 Aligned_cols=152 Identities=25% Similarity=0.402 Sum_probs=125.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCCC--cccc
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGD--LTQI 516 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~gd--~T~i 516 (1255)
++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|.|+++|.+| .++...+..+ ...+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 468999999964 3799999999999999999999999999999999999999998 2333322111 0112
Q ss_pred ccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccc-cCCEEEEE
Q 000845 517 GERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLP-AFDSILLI 594 (1255)
Q Consensus 517 Ge~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl 594 (1255)
|-- ..||||||||++||||++++|+++||||||++||+.+.+.+. +++..+ .+++|+|++||+++.+. .||++++|
T Consensus 78 ~~~-~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 78 AMV-YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred EEE-EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 211 129999999999999999999999999999999999988776 455444 35899999999999876 58999999
Q ss_pred eCCEEEE
Q 000845 595 SGGEIIQ 601 (1255)
Q Consensus 595 ~~G~i~~ 601 (1255)
++|++++
T Consensus 156 ~~g~i~~ 162 (163)
T cd03216 156 RDGRVVG 162 (163)
T ss_pred ECCEEEe
Confidence 9999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=268.54 Aligned_cols=157 Identities=36% Similarity=0.570 Sum_probs=129.6
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC-----------C
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK-----------M 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~-----------~ 507 (1255)
++++|++++|+... .++++|+||++++||+++|+|+||||||||+++|.|.++|.+|. ++. .
T Consensus 1 i~~~~~~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQE-QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCC-ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 46889999997532 37999999999999999999999999999999999999999982 111 1
Q ss_pred CCCCC---ccccccC-CCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCC
Q 000845 508 LPFGD---LTQIGER-GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 508 lp~gd---~T~iGe~-G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~ 583 (1255)
.++.. ...+.|+ ..+||||||||++||||++.+|+++||||||++||+.+.+.++ +++..+.+++|+|++||+++
T Consensus 80 ~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~ 158 (178)
T cd03247 80 LNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLKDKTLIWITHHLT 158 (178)
T ss_pred EccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHH
Confidence 11110 0112222 6789999999999999999999999999999999999987776 45555556899999999999
Q ss_pred ccccCCEEEEEeCCEEEEec
Q 000845 584 FLPAFDSILLISGGEIIQAA 603 (1255)
Q Consensus 584 ~l~~aD~Iivl~~G~i~~~G 603 (1255)
.++.||++++|++|++++.|
T Consensus 159 ~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 159 GIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHhCCEEEEEECCEEEecC
Confidence 99889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=276.07 Aligned_cols=154 Identities=54% Similarity=0.903 Sum_probs=134.0
Q ss_pred EEEEeeEEEecCCCC--CCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC--------------------
Q 000845 445 IFIKSADLSWEADLL--NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-------------------- 502 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~--~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G-------------------- 502 (1255)
++++|++++|+.... +++|+|+||+|++|++++|+||+|||||||+++|+|.++|.+|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 3699999999999999999999999999999999999999988
Q ss_pred ---------------------------cccCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCH
Q 000845 503 ---------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDA 555 (1255)
Q Consensus 503 ---------------------------~Di~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~ 555 (1255)
..+..+|.|.+|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 01233455667777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCE
Q 000845 556 KTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLPAFDSILLISGGE 598 (1255)
Q Consensus 556 ~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 598 (1255)
+..+.+++.++.... +++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 998888876765443 4799999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=294.53 Aligned_cols=165 Identities=28% Similarity=0.414 Sum_probs=135.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+. +.++|+|+||++++||+++|+|||||||||||++|.|..+|.+| .++.
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4789999999942 24799999999999999999999999999999999999999988 1211
Q ss_pred ------CCCC--------------C------------------CccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 507 ------MLPF--------------G------------------DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 507 ------~lp~--------------g------------------d~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.+|+ + -.........+|||||||||+||||++.+|+++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1111 0 0001123457899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||+||+.+.+.+.+. +..+. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 161 P~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 161 PLSNLDAKLRVQMRLE-IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999888654 44443 389999999999876 56899999999999999999988643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=270.25 Aligned_cols=401 Identities=20% Similarity=0.265 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcc-----CChhHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Q 000845 188 WFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMM-----HTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVV 261 (1255)
Q Consensus 188 ~~~~~~~~~~~~r~~l~~~iy~K~l~l~~~~~~~-----~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~v~~~l 261 (1255)
..|...++..+.|..|+.-+..|=|.-....+-. ...-..-..++.|+..+.+... ....+..+.+.++.-..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999988765432211 1112345688889888776543 333444444555555556
Q ss_pred HHHHHhHHH---------HHH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHhCch
Q 000845 262 VYYSVGLAT---------IAT--LIVMILTVLGNSPLAKLQHKY-----QETFMTAQNKRLKAITEVLVNMKVLKLYAWD 325 (1255)
Q Consensus 262 L~~~lG~~~---------l~g--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~Rv~~~~e~l~~Ik~IK~~~wE 325 (1255)
||..-|..+ +.| +.++++.+++..+++-+.++- .++....-|-|-.++ .+..+...|-+|+-|
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE 264 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGE 264 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCc
Confidence 664444211 111 112223334444444333332 333344455555544 577788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000845 326 SYFKNVIEKLRSEEYGWLKVLQ----LQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLL 401 (1255)
Q Consensus 326 ~~~~~~i~~~R~~El~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~l 401 (1255)
+...+++.+.=..=++..++.. .+..+.....++++ +++.. ..+-.+..+.++-+...++-..|+.+...++.+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~l-i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPIL-IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHHH-hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777653332222222211 11112222222222 11111 111124578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC------CCCcchh-ccc-ccccCcceEEEEeeEEEecCCCCCCccccceeeeeCC
Q 000845 402 PDVFGAFIEAKVSLDRIANFLEAPE------LQNSDMQ-QVC-SRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPA 473 (1255)
Q Consensus 402 p~~i~~~~~a~~s~~Ri~~fL~~~e------~~~~~~~-~~~-~~~~~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G 473 (1255)
-..++.+.+=+++..|+.+|-..=+ ....... ... ... .+..|.++|++..-|.. .+.++++|+++++|
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G 419 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDN-ADHGITLENLSLRTPDG--QTLLSELNFEVRPG 419 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccc-ccceeEEeeeeEECCCC--CeeeccceeeeCCC
Confidence 9999999999999999999985311 1110000 000 011 15789999999998764 38999999999999
Q ss_pred cEEEEEccCCCCHHHHHHHHhccCCCCCCc-----c--c------CCCCCC-----------C-----c------ccc--
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPRLQGM-----D--L------KMLPFG-----------D-----L------TQI-- 516 (1255)
Q Consensus 474 ~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-----D--i------~~lp~g-----------d-----~------T~i-- 516 (1255)
+-+.|.|++|||||||+++|.|..|.-+|. | + -.+|.| . . .++
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL 499 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCc
Confidence 999999999999999999999999987771 1 1 112222 1 1 011
Q ss_pred ----------ccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc
Q 000845 517 ----------GERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586 (1255)
Q Consensus 517 ----------Ge~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~ 586 (1255)
..-...|||||||||++||.++.+|++++|||+|||||+.++..+++ .+++.+.+.|+|-|.|+.....
T Consensus 500 ~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 500 GDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHRPTLWN 578 (604)
T ss_pred HHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEeccchhhHH
Confidence 12246799999999999999999999999999999999999988864 5567778999999999998888
Q ss_pred cCCEEEEEe
Q 000845 587 AFDSILLIS 595 (1255)
Q Consensus 587 ~aD~Iivl~ 595 (1255)
..++.+.++
T Consensus 579 ~h~~~l~l~ 587 (604)
T COG4178 579 FHSRQLELL 587 (604)
T ss_pred HHhhheeec
Confidence 777766664
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=255.45 Aligned_cols=469 Identities=16% Similarity=0.194 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cccchh---HHHHhchhhHhhhHhHHHH
Q 000845 726 VIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDS-TPVGRI---LSRVSSDLSIIDLDLSIKS 801 (1255)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~vl~~p~~~f~~-~~~G~i---l~r~s~D~~~id~~l~~~~ 801 (1255)
++-.+++++-..+.+..-.++..+.++..-.++-...++..+... .||.- +--|++ -|+++.|+....+......
T Consensus 160 LlkW~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLy 238 (728)
T KOG0064|consen 160 LLKWFLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLY 238 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHH
Confidence 444556666666666666777777777777777777777777666 66654 333443 4678999988777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhchHHHHH
Q 000845 802 TIAVGTTMAVISTFVVLGALTWQVLL----VIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRA 877 (1255)
Q Consensus 802 ~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIra 877 (1255)
..+.--++-++..-+.+.-.+-.... .+...+.+...+.+.+.+..-++...+..+++.+...-+..+.+.+.|-.
T Consensus 239 snLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAf 318 (728)
T KOG0064|consen 239 SNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAF 318 (728)
T ss_pred HhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHh
Confidence 65555555444333222211111111 11122223334556666667777778888888899999999999999999
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----hccCcc---cHHH-----H
Q 000845 878 FQNEERFFAKNLDLIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTT----L----LHKGHK---GAGY-----T 941 (1255)
Q Consensus 878 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~~----~----~~~~~~---~~~~-----~ 941 (1255)
|+..+...++.++..+..............|....-+++.--+-.....+.+ + ...++. ..+. .
T Consensus 319 y~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f 398 (728)
T KOG0064|consen 319 YGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEF 398 (728)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHH
Confidence 9999988888777776665555555556666654444332211111111000 0 001110 0111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC-----------C--CCCcccc-----cCCCCCCC---CCC
Q 000845 942 GMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI-----------P--SEAPELV-----QKNSPAPD---WPP 1000 (1255)
Q Consensus 942 g~~l~~~~~~~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~-----------~--~e~~~~~-----~~~~~~~~---~p~ 1000 (1255)
..+=....+....+.-++....++.+...--.|+.+.++. + +|..... .+..+.+. -..
T Consensus 399 ~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~ 478 (728)
T KOG0064|consen 399 ITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRN 478 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhc
Confidence 1111112233344444555555555555555565543310 0 0100000 00000000 001
Q ss_pred CceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcc
Q 000845 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1001 ~g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
...|.++||-.--|. ...+...+||.|+||-++-|.||||||||||++.|.|+.+...|...+-- +.+
T Consensus 479 ~~gI~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~ 546 (728)
T KOG0064|consen 479 FNGIILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNN 546 (728)
T ss_pred ccceEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccc
Confidence 235899999887654 45589999999999999999999999999999999999999999876531 456
Q ss_pred cEEEccCCccCCCchhhhccc-C-------CCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1081 LGIIPQDPTLFSGSVRYNLDP-L-------SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1081 i~~vpQdp~Lf~gTIr~Nl~~-~-------~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
|-||||.|+.=-||+||.+-+ - ..++|.|+.. .|+.++|+..+ +...|+|.... --.-||||+|
T Consensus 547 mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~------iL~~v~L~~i~-qr~~g~da~~d-Wkd~LsgGek 618 (728)
T KOG0064|consen 547 IFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEA------ILDIVHLEHIL-QREGGWDAVRD-WKDVLSGGEK 618 (728)
T ss_pred eEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHH------HHHHhhHHHHH-HhccChhhhcc-HHhhccchHH
Confidence 999999999989999999842 1 2478889887 89999997544 55677887653 3357999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhhcCEEEEE
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSM 1217 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1217 (1255)
||+++||.+.++|+--+|||+||++-.+.|..|.++.+. .|-+.|.|+||++....-...+-.
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987 588999999999987654444443
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=260.53 Aligned_cols=193 Identities=24% Similarity=0.380 Sum_probs=157.4
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCCchhh
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRY 1097 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~gTIr~ 1097 (1255)
.++|+||||++++||++||||+||||||||+++|.|.|+|++|+|.++|.--.-+.+ ..|+-|| -|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~pe------lTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDPE------LTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCcc------cchHH
Confidence 369999999999999999999999999999999999999999999999953222111 1233332 48899
Q ss_pred hcccCC---CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCC
Q 000845 1098 NLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174 (1255)
Q Consensus 1098 Nl~~~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~T 1174 (1255)
|+-+.+ -.+.+|+.+ ...+..+=++|.+|+ |.|| .+.|-|.+-||++|-|.--+|+|||+||..
T Consensus 109 Ni~l~~~~~G~~~~ei~~--~~~eIieFaELG~fi-------~~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 109 NIYLRGLILGLTRKEIDE--KVDEIIEFAELGDFI-------DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHhCccHHHHHH--HHHHHHHHHHHHHHh-------hCch----hhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 986433 345666544 112355566666665 4444 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-cCCcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhHHhhc
Q 000845 1175 ASIDNATDSILQNTIRRE-FANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1175 S~LD~~te~~i~~~l~~~-~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1234 (1255)
|.-|+.=.++=++.+++. .+++|+|+|+|+++.|++ |||+++|++|+|...|+|++..+.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 999999888877777776 578999999999999987 999999999999999999999864
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=238.25 Aligned_cols=192 Identities=23% Similarity=0.326 Sum_probs=157.1
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CCEEEEcCEeCCCCChHHhhc
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~---~G~I~idG~di~~i~~~~lR~ 1079 (1255)
-..++||+.+-+ +...|.|+||+|.+||+|-|.||||||||||+.-+.|.+.++ +|++.+|++++..++.+ |+
T Consensus 2 ~l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 467899998764 345899999999999999999999999999999999999874 89999999999998866 68
Q ss_pred ccEEEccCCccCCC-chhhhcccCC------CCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHH
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPLS------QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152 (1255)
Q Consensus 1080 ~i~~vpQdp~Lf~g-TIr~Nl~~~~------~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1152 (1255)
++|+++||+.||+- ++-+||.+.- +....... .||++.+|.++..+.|+ +||||||
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~------aAL~~~gL~g~f~~dP~-----------tlSGGQr 140 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAAN------AALERSGLDGAFHQDPA-----------TLSGGQR 140 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHH------HHHHHhccchhhhcChh-----------hcCcchH
Confidence 99999999999986 9999996432 11122222 38889888888776664 6999999
Q ss_pred HHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCchhhhhcCEEE
Q 000845 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVL 1215 (1255)
Q Consensus 1153 Qrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~ 1215 (1255)
-|++|-|+|+..|+.|+||||.|.||..-.....+-+-+.. .+--+|.|||++..+..-.||+
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999999999999887776655544332 4678999999998776433433
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=276.54 Aligned_cols=158 Identities=39% Similarity=0.596 Sum_probs=131.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------c-------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------D------------- 504 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------D------------- 504 (1255)
.++++|+++.|+.. ..++|+|+||++++|++++|+||||||||||+++|.|+.+|.+|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 247999999999999999999999999999999999999988880 0
Q ss_pred ------------------------------------------cCCCCCCCccccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 505 ------------------------------------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 505 ------------------------------------------i~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
+..+|.|..|.+.....+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 01122233344444557999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEec
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAA 603 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G 603 (1255)
++||||||++||+.+.+.+. +++..+.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999987775 5565555568999999999988889999999999997654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=291.26 Aligned_cols=164 Identities=27% Similarity=0.427 Sum_probs=136.7
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------ccc-----------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL----------- 505 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di----------- 505 (1255)
..++++|++++|.. .++|+|+||++++||+++|+|||||||||||++|.|+.+|.+| .++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4689999999999999999999999999999999999999988 111
Q ss_pred ------CCCCC--------------C---Cc---------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEe
Q 000845 506 ------KMLPF--------------G---DL---------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 506 ------~~lp~--------------g---d~---------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLD 547 (1255)
..+|+ + .. ........+|||||||||+||||++.+|+++|||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11121 0 00 0112356899999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhh
Q 000845 548 DPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 548 dp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||||+||+.+.+.+.+ .+..+.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 162 EP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 162 EPLSNLDANLRRSMRE-KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999988754 4555443 89999999999986 5689999999999999999988764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=281.00 Aligned_cols=162 Identities=32% Similarity=0.431 Sum_probs=132.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----------- 507 (1255)
++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|.|.++|.+| .++..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 368899999963 4799999999999999999999999999999999999999888 11110
Q ss_pred ----CCCC-----Ccc-----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 508 ----LPFG-----DLT-----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 508 ----lp~g-----d~T-----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
.|+. +.| .......+||||||||++||||+..+|++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0000 000 01123467999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
+||||||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 158 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 158 LLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999987775 4555443 3899999999999876 589999999999999999888754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=284.92 Aligned_cols=167 Identities=29% Similarity=0.360 Sum_probs=137.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|.++|.+| .++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999743334699999999999999999999999999999999999999988 1110
Q ss_pred ---------CCCC--------------CC------------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 ---------MLPF--------------GD------------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 ---------~lp~--------------gd------------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.++. |. .........+||||||||++||||++.+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000 00 001123457999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||||++||+.+.+.++ +++..+. .|+|+|++||+++.+..||+|++|++|+++..|+.+++...
T Consensus 164 LDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 164 LDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999987665 5565543 38999999999998888999999999999999998887644
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=284.85 Aligned_cols=166 Identities=25% Similarity=0.354 Sum_probs=136.5
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC--------
Q 000845 444 SIFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM-------- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~--~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~-------- 507 (1255)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|.+| .++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997432 14799999999999999999999999999999999999999888 11110
Q ss_pred ------CCCC----------------------------------------Cc--cccccCCCcCChHHHHHHHHHHHHcc
Q 000845 508 ------LPFG----------------------------------------DL--TQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 508 ------lp~g----------------------------------------d~--T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
.|+. -. +........||||||||++||||+..
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 0000 00 11233467899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
+|+++||||||++||+.+.+.++ +++..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999988775 5565543 3899999999999874 699999999999999999988754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-30 Score=340.00 Aligned_cols=212 Identities=18% Similarity=0.231 Sum_probs=164.6
Q ss_pred CceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CCEEEEcCEeCCCCChHHhhcccEEEccCCccCC-C
Q 000845 1018 PLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT---GGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFS-G 1093 (1255)
Q Consensus 1018 ~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~---~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~-g 1093 (1255)
..+|+|+|+.|+|||.++|+||||||||||+++|.|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987654 3788999999988876 4
Q ss_pred chhhhcccCCC-------------CChHHHHhccC---c----hhHHHhcc------HHHHHHh--hhcCccchhcCC-C
Q 000845 1094 SVRYNLDPLSQ-------------FTDQEIWEVTI---P----SQVLEKCQ------LREVIQE--KKEGLDSLVVQD-G 1144 (1255)
Q Consensus 1094 TIr~Nl~~~~~-------------~sd~ei~~~~~---~----~~al~~~~------l~~~i~~--lp~gldt~v~e~-G 1144 (1255)
|++|||++... .+.+|-.+... . .++....+ .++.++. +.+-.||.||+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999974211 01111000000 0 00000000 1122222 223346777653 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEeccCch-hh-hhcCEEEEEeCC
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIA-TV-MDCNMVLSMSDG 1220 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~-ti-~~~DrI~vl~~G 1220 (1255)
..||||||||++|||+++.+|++|+|||||++||+.+...+.+.|++.. .++|+|+++|++. .+ .-||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 5799999999999999999999999999999999999999999999874 3789999999973 44 459999999999
Q ss_pred EEEEEcChhHHh
Q 000845 1221 KLVEYDEPKKLL 1232 (1255)
Q Consensus 1221 ~ive~G~~~eLl 1232 (1255)
+++.+|++++++
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=291.96 Aligned_cols=152 Identities=31% Similarity=0.403 Sum_probs=127.8
Q ss_pred CCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC-----------------------CCC
Q 000845 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM-----------------------LPF 510 (1255)
Q Consensus 460 ~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~-----------------------lp~ 510 (1255)
+++|+|+||+|++||+++|+|||||||||||++|.|+++|++| .|+.. +|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999988 22211 111
Q ss_pred C--------------------------------CccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHH
Q 000845 511 G--------------------------------DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTA 558 (1255)
Q Consensus 511 g--------------------------------d~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~ 558 (1255)
. -....+....+|||||||||+||||++.+|+|+||||||||||+.++
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0 00113456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 559 KFLFTEYVMGAL-SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 559 ~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+.+.+.+..-.. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 988766554322 489999999999975 56899999999999999999998754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=284.63 Aligned_cols=165 Identities=30% Similarity=0.424 Sum_probs=135.5
Q ss_pred EEEEeeEEEecCCCC--CCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC----------
Q 000845 445 IFIKSADLSWEADLL--NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK---------- 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~--~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~---------- 506 (1255)
|+++|++|+|+.... +++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+| .++.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3699999999999999999999999999999999999999888 1110
Q ss_pred ------CCCC----------------------CC-----------------c--cccccCCCcCChHHHHHHHHHHHHcc
Q 000845 507 ------MLPF----------------------GD-----------------L--TQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 507 ------~lp~----------------------gd-----------------~--T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
..++ |. . ........+||||||||++||||++.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 0000 00 0 01123457899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
+|+++||||||++||+.+.+.+. +++..+. +|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999988776 4555543 4899999999999875 699999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=286.89 Aligned_cols=164 Identities=29% Similarity=0.439 Sum_probs=136.2
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC----------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK---------- 506 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~---------- 506 (1255)
..++++|++++|+. ..+|+|+||+|++||+++++||||||||||+++|+|.++|.+| .|+.
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999988 1110
Q ss_pred -CCCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEEE
Q 000845 507 -MLPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 507 -~lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLL 546 (1255)
.+|+. +.| .......+||||||||++||||+..+|++++|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 00000 000 01123468999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 547 Ddp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||||++||+.+.+.+++ ++..+. +|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 163 DEPt~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 163 DEPTTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred eCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999888764 555543 4899999999999986 589999999999999999998853
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=277.84 Aligned_cols=162 Identities=27% Similarity=0.416 Sum_probs=135.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~~----------- 507 (1255)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|.++|.+|. ++..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 578999999963 47999999999999999999999999999999999999998881 1110
Q ss_pred CCC---------------------C------------------CccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 508 LPF---------------------G------------------DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 508 lp~---------------------g------------------d~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.|+ + -.........+||||||||++||||+..+|+++||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 0 0011234567899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||++||+.+.+.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 159 P~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 159 PTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999887764 555543 4899999999999988899999999999999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=290.85 Aligned_cols=164 Identities=32% Similarity=0.398 Sum_probs=136.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cc-------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MD------------- 504 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~D------------- 504 (1255)
.++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|.|..+|.+| .+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5889999999964 4689999999999999999999999999999999999999988 11
Q ss_pred ----cCCCCCCC--------------------------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 505 ----LKMLPFGD--------------------------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 505 ----i~~lp~gd--------------------------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
...+|+.. .........+|||||||||+||||+..+|+++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE 160 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11222100 001234667899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||+||+.+.+++.+ .+..+. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 161 P~s~LD~~~r~~l~~-~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 161 PLSALDARVREHLRT-EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999887754 444443 389999999999986 56899999999999999999988653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=291.88 Aligned_cols=166 Identities=30% Similarity=0.411 Sum_probs=135.9
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC---------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l--------- 508 (1255)
++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|.|.++|.+| .++..+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 67899999997321 35799999999999999999999999999999999999999888 122110
Q ss_pred ------CCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 509 ------PFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 509 ------p~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
++. +.| .......+|||||||||+||||+..+|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 000 000 01234578999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+|||||||+||+.+.+.+. +++..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 162 LlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 162 LLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999988776 4555443 3899999999999876 5899999999999999999988643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=275.75 Aligned_cols=158 Identities=30% Similarity=0.500 Sum_probs=133.9
Q ss_pred CcceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------c----------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------D---------- 504 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------D---------- 504 (1255)
..+.++++|++++|+.....++|+|+||+|++|++++|+||||||||||+++|+|.++|.+|. +
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 346799999999997543347999999999999999999999999999999999999998880 0
Q ss_pred --------------------c-------------------------CCCCCCCccccccCCCcCChHHHHHHHHHHHHcc
Q 000845 505 --------------------L-------------------------KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 505 --------------------i-------------------------~~lp~gd~T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
+ +.++.|..+.+..+..+|||||||||+||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 0 0122244455667788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEE
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEI 599 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i 599 (1255)
+|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQ-QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999987775 555555567999999999999888999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=289.45 Aligned_cols=165 Identities=32% Similarity=0.423 Sum_probs=136.7
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCC--C------cccC--------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQ--G------MDLK-------- 506 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~--G------~Di~-------- 506 (1255)
+.++++|++++|.. .++|+|+||++++||+++|+|||||||||||++|.|..+|.+ | .++.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999964 369999999999999999999999999999999999999999 8 1111
Q ss_pred ---------CCCC--------------C------------------CccccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 ---------MLPF--------------G------------------DLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 ---------~lp~--------------g------------------d~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.+|+ + -.........+|||||||||+||||+..+|+++|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111 0 0001234567899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc-C--CcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL-S--KKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l-~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
||||||+||+...+.+.+ .+..+. + |+|+|+|||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 161 LDEP~s~LD~~~r~~l~~-~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 161 LDEPLSALDANIRANMRE-EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EcCccccCCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999887764 444443 2 789999999999864 6899999999999999999998643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=289.85 Aligned_cols=166 Identities=27% Similarity=0.378 Sum_probs=137.0
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------c------------
Q 000845 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------M------------ 503 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~------------ 503 (1255)
...++++|++++|.. .++|+|+||++++||+++|+|||||||||||++|.|..+|.+| .
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346899999999963 4689999999999999999999999999999999999999988 1
Q ss_pred -----ccCCCCC---------C------C-----------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEE
Q 000845 504 -----DLKMLPF---------G------D-----------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 504 -----Di~~lp~---------g------d-----------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLL 546 (1255)
|...+|+ + . .........+|||||||||+||||++.+|+++||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1112221 0 0 0011235578999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 547 Ddp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||||+||++..+.+. +.+..+. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 169 DEP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 169 DESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred eCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999987775 4554443 389999999999875 56899999999999999999988643
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=262.81 Aligned_cols=151 Identities=34% Similarity=0.543 Sum_probs=123.1
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCCC----Ccc
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFG----DLT 514 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~g----d~T 514 (1255)
++++|++++|+.. ..++++|+||++++||+++|+||+|||||||+++|+|+++|.+| .++...+.. ...
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999988 222211100 000
Q ss_pred -----------ccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCC
Q 000845 515 -----------QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQV 582 (1255)
Q Consensus 515 -----------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l 582 (1255)
.+.++- ||||||||++||||+..+|+++||||||++||+.+.+.+.+ .+..+. +++|+|++||++
T Consensus 80 ~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 80 YLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGATRIVIAHRP 156 (173)
T ss_pred EECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence 111111 99999999999999999999999999999999999887764 554443 489999999999
Q ss_pred CccccCCEEEEEeCCEE
Q 000845 583 DFLPAFDSILLISGGEI 599 (1255)
Q Consensus 583 ~~l~~aD~Iivl~~G~i 599 (1255)
+.+..||+|++|++|++
T Consensus 157 ~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 157 ETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHhCCEEEEEECCCC
Confidence 98888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=311.68 Aligned_cols=226 Identities=18% Similarity=0.197 Sum_probs=161.7
Q ss_pred ceEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCCEEEEcCEeCCC--CCh--
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV---EPTGGKIIIDGLDITT--IGL-- 1074 (1255)
Q Consensus 1002 g~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~---~~~~G~I~idG~di~~--i~~-- 1074 (1255)
..|+++|++++|+. .++|+|+||+|++||++|||||||||||||+++|.|.. .|.+|+|.+.++++.. ++.
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 46999999999953 35999999999999999999999999999999999864 5789999865554321 111
Q ss_pred ----------HHhhcccEEEccCCccCCCchhhhccc-CC-CCChHHHHhccCchhHHHhccHH------HHHHhhh--c
Q 000845 1075 ----------YDLRSNLGIIPQDPTLFSGSVRYNLDP-LS-QFTDQEIWEVTIPSQVLEKCQLR------EVIQEKK--E 1134 (1255)
Q Consensus 1075 ----------~~lR~~i~~vpQdp~Lf~gTIr~Nl~~-~~-~~sd~ei~~~~~~~~al~~~~l~------~~i~~lp--~ 1134 (1255)
..++..+++++|+|.+...+..+|... .. ..+.+++.+. ..++++..++. +-+...- -
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQR--LEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 113556899999987654455555421 11 1122222110 00133332221 1111111 1
Q ss_pred Ccc-chhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcCCcEEEEeccCchhhhh-cC
Q 000845 1135 GLD-SLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD-CN 1212 (1255)
Q Consensus 1135 gld-t~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~D 1212 (1255)
|++ ......-.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++. ++|+|+|+|+++.+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 332 1122223579999999999999999999999999999999999999999999875 6899999999999987 99
Q ss_pred EEEEEeCCEEE-EEcChhHHhh
Q 000845 1213 MVLSMSDGKLV-EYDEPKKLLR 1233 (1255)
Q Consensus 1213 rI~vl~~G~iv-e~G~~~eLl~ 1233 (1255)
+|++|++|+++ ..|++.+...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999997 4667665543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=268.73 Aligned_cols=161 Identities=30% Similarity=0.496 Sum_probs=134.1
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------cc----------
Q 000845 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DL---------- 505 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di---------- 505 (1255)
.+.++++|++++|+... .++|+|+||++++|++++|+|++|||||||+++|+|++++.+|. ++
T Consensus 4 ~~~l~~~~l~~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPDL-PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCCC-cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 45689999999997532 37999999999999999999999999999999999999999881 10
Q ss_pred --------------------CCCCCCCc------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHH
Q 000845 506 --------------------KMLPFGDL------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAK 559 (1255)
Q Consensus 506 --------------------~~lp~gd~------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~ 559 (1255)
.....-+. ..++.+..+||||||||++||||++.+|+++||||||++||+.+.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 162 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 00000000 1135567899999999999999999999999999999999999987
Q ss_pred HHHHHHHhhhcCCcEEEEEccCCCccccCCEEEEEeCCEEEEecC
Q 000845 560 FLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAAT 604 (1255)
Q Consensus 560 ~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~ 604 (1255)
.+. +.+..+.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 163 ~l~-~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 163 LIQ-KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 665 55555556899999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=263.61 Aligned_cols=154 Identities=33% Similarity=0.465 Sum_probs=127.9
Q ss_pred EEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCCC---------
Q 000845 446 FIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPF--------- 510 (1255)
Q Consensus 446 ~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp~--------- 510 (1255)
+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|.|.++|.+| .++..++.
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 36889999964 4699999999999999999999999999999999999999998 23322111
Q ss_pred --------CCccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEcc
Q 000845 511 --------GDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTH 580 (1255)
Q Consensus 511 --------gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH 580 (1255)
|-...+...+.+||||||||++||||+..+|+++||||||++||+.+.+.+. +++..+.+ ++|+|++||
T Consensus 78 ~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 78 VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVLH 156 (180)
T ss_pred HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 1111234567889999999999999999999999999999999999987665 56655543 789999999
Q ss_pred CCCcc-ccCCEEEEEeCCEEEEec
Q 000845 581 QVDFL-PAFDSILLISGGEIIQAA 603 (1255)
Q Consensus 581 ~l~~l-~~aD~Iivl~~G~i~~~G 603 (1255)
+++.+ ..||++++|++|++++.|
T Consensus 157 ~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 157 DLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CHHHHHHhCCEEEEEECCEEEecC
Confidence 99997 568999999999997653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-30 Score=256.43 Aligned_cols=136 Identities=40% Similarity=0.678 Sum_probs=122.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcCEeCCCCChHHhhcccEEEccCCccCCC-chhhhc
Q 000845 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNL 1099 (1255)
Q Consensus 1021 L~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~vpQdp~Lf~g-TIr~Nl 1099 (1255)
|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.+||.++...+...+|+.++++||++.+|.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987 59999
Q ss_pred ccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHHHHHHHHHHccCCCeEEEecCCC
Q 000845 1100 DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175 (1255)
Q Consensus 1100 ~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDE~TS 1175 (1255)
..++++.+ +++.+++.+ ..+..++.....||+|||||++||||++++|++||||||||
T Consensus 80 -----~~~~~~~~------~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEE------VLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHH------HHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccc------ccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23455655 777776644 35677777778999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=287.12 Aligned_cols=169 Identities=19% Similarity=0.337 Sum_probs=138.4
Q ss_pred cceEEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCC---CC------cccCC----
Q 000845 442 EHSIFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRL---QG------MDLKM---- 507 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~---~G------~Di~~---- 507 (1255)
+..++++|++++|.... ..++|+|+||+|++||+++|+|+||||||||+++|+|.+++. +| .|+..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 34689999999996432 246999999999999999999999999999999999999885 66 11110
Q ss_pred ------------CCC-----------------------CC----------------------ccccccCCCcCChHHHHH
Q 000845 508 ------------LPF-----------------------GD----------------------LTQIGERGVNLSGGQKQR 530 (1255)
Q Consensus 508 ------------lp~-----------------------gd----------------------~T~iGe~G~~LSGGQkqR 530 (1255)
.++ +. .+.++..+..||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 000 00 011234567899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhH
Q 000845 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDH 607 (1255)
Q Consensus 531 IaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~e 607 (1255)
|+||||++.+|+++|+||||||||+.+.+.+. +++..+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998886 4555543 3899999999999986 589999999999999999999
Q ss_pred Hhhc
Q 000845 608 LLVT 611 (1255)
Q Consensus 608 l~~~ 611 (1255)
+...
T Consensus 249 i~~~ 252 (330)
T PRK09473 249 VFYQ 252 (330)
T ss_pred HHhC
Confidence 8753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=287.34 Aligned_cols=167 Identities=21% Similarity=0.361 Sum_probs=135.9
Q ss_pred eEEEEeeEEEecCCCC-CCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCC----CCC------cccCC-----
Q 000845 444 SIFIKSADLSWEADLL-NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR----LQG------MDLKM----- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~-~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~----~~G------~Di~~----- 507 (1255)
.++++|++++|+.... .++|+||||+|++||+++|+|+||||||||+++|+|.+++ ++| .|+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4789999999975322 3699999999999999999999999999999999999973 555 22211
Q ss_pred -----------CCCCC-------c--------------------------------------cccccCCCcCChHHHHHH
Q 000845 508 -----------LPFGD-------L--------------------------------------TQIGERGVNLSGGQKQRI 531 (1255)
Q Consensus 508 -----------lp~gd-------~--------------------------------------T~iGe~G~~LSGGQkqRI 531 (1255)
.++.. . ........+|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 11100 0 011235678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 532 aLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
+||||+..+|+++|+|||||+||+.+...+.+ ++..+. .|.|+|+|||+++.+. .||+|++|.+|+|++.|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999888764 454443 4899999999999985 6899999999999999999998
Q ss_pred hhc
Q 000845 609 LVT 611 (1255)
Q Consensus 609 ~~~ 611 (1255)
...
T Consensus 242 ~~~ 244 (326)
T PRK11022 242 FRA 244 (326)
T ss_pred hhC
Confidence 754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=281.46 Aligned_cols=167 Identities=23% Similarity=0.438 Sum_probs=136.8
Q ss_pred eEEEEeeEEEecCCC--CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC---------
Q 000845 444 SIFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK--------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~--~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~--------- 506 (1255)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|..| .++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24799999999999999999999999999999999999999888 1110
Q ss_pred -------CCCC----------------------------------------CCcc-ccccCCCcCChHHHHHHHHHHHHc
Q 000845 507 -------MLPF----------------------------------------GDLT-QIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 507 -------~lp~----------------------------------------gd~T-~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
..++ |..+ .....+.+||||||||++||||++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0011 0000 112356889999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 539 ~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
.+|+++||||||++||+.+.+.+. +++..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999988775 5555543 4899999999999875 6899999999999999999887643
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=273.26 Aligned_cols=155 Identities=34% Similarity=0.428 Sum_probs=126.6
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC----------C
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----------L 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----------l 508 (1255)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|.+| .++.. .
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 367899999964 4799999999999999999999999999999999999999888 12111 0
Q ss_pred CCC-----Cc----------------------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCc
Q 000845 509 PFG-----DL----------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 509 p~g-----d~----------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp 549 (1255)
|+. +. ........+||||||||++||||+..+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 100 00 011234568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEec
Q 000845 550 FSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAA 603 (1255)
Q Consensus 550 ~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G 603 (1255)
|++||+.+.+.++ +++..+. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 158 t~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 158 LSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999988776 5555543 3899999999999875 58999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=286.59 Aligned_cols=165 Identities=28% Similarity=0.446 Sum_probs=136.4
Q ss_pred cceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC---------
Q 000845 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK--------- 506 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~--------- 506 (1255)
...|+++|++++|+. ..+|+|+||+|++|++++++||||||||||+++|+|.++|.+| .|+.
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999963 3699999999999999999999999999999999999999988 1110
Q ss_pred --CCCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 --MLPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 --~lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.+|+. +.| ....+..+||||||||++||||+..+|+++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00000 000 0123456899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|||||++||+.+.+.+++ ++..+. +|+|+|++||+++.+. .||+|++|++|+++..|+.+++..
T Consensus 196 LDEPt~gLD~~~r~~l~~-~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999887764 554443 5899999999999986 589999999999999999998754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=284.88 Aligned_cols=164 Identities=27% Similarity=0.422 Sum_probs=135.1
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC----------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK---------- 506 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~---------- 506 (1255)
..++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|.++|.+| .++.
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35899999999963 4699999999999999999999999999999999999999888 1110
Q ss_pred -CCCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEEE
Q 000845 507 -MLPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 507 -~lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLL 546 (1255)
.+|+. +.| .......+||||||||++||||+..+|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000 000 01234568999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 547 Ddp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||||++||+.+.+.+++ ++..+ .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++..
T Consensus 160 DEPt~gLD~~~~~~l~~-~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred eCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999887764 55444 35899999999999885 589999999999999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=273.73 Aligned_cols=162 Identities=28% Similarity=0.495 Sum_probs=132.6
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC-----------C
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK-----------M 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~-----------~ 507 (1255)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|.|.++|.+|. ++. .
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4688999999642 247999999999999999999999999999999999999998881 110 0
Q ss_pred CCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 508 LPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 508 lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.++. ..| .......+||||||||++||||+..+|+++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0000 000 0123457899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 549 PFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus 160 P~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 160 PTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999987775 55655556799999999999886 5899999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=275.48 Aligned_cols=164 Identities=30% Similarity=0.447 Sum_probs=133.3
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC---------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l--------- 508 (1255)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|.|.++|.+| .++...
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996431 12799999999999999999999999999999999999999888 111100
Q ss_pred ------CCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCE
Q 000845 509 ------PFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 509 ------p~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~i 543 (1255)
|+. ..| .......+||||||||++||||+..+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 000 000 11234578999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 544 lLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
+||||||++||+.+.+.++ +++..+. .++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 162 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 162 LLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred EEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999987765 5555443 3899999999999876 58999999999999999887764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=273.60 Aligned_cols=160 Identities=27% Similarity=0.426 Sum_probs=129.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------C
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK-----------M 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~-----------~ 507 (1255)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|.++|.+| .++. .
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468899999963 3699999999999999999999999999999999999999888 1110 0
Q ss_pred CCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 508 LPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 508 lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.|+. +.| .......+||||||||++||||++.+|+++||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0000 000 0112356899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
||++||+++.+.+. +.+..+. + ++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 158 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 158 PTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999987775 4554443 3 789999999999876 5899999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=272.92 Aligned_cols=158 Identities=25% Similarity=0.389 Sum_probs=127.8
Q ss_pred EEEEeeEEEecCCCC-CCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC-----------
Q 000845 445 IFIKSADLSWEADLL-NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK----------- 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~-~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~----------- 506 (1255)
++++|++++|+.... .++|+|+||++++|++++|+|+||||||||+++|.|.++|.+|. ++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999975321 26999999999999999999999999999999999999999881 110
Q ss_pred CCCCC-----Cc----------------------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEe
Q 000845 507 MLPFG-----DL----------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 507 ~lp~g-----d~----------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLD 547 (1255)
..|+. .. ........+||||||||++||||++.+|+++|||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00000 00 0123356789999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEec
Q 000845 548 DPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAA 603 (1255)
Q Consensus 548 dp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G 603 (1255)
|||++||+.+.+.+. +.+..+. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 162 EPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 162 EPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999987775 4555443 5899999999999875 58999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=276.44 Aligned_cols=161 Identities=28% Similarity=0.426 Sum_probs=132.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~------------ 506 (1255)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|.|.++|.+|. ++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 357899999963 36999999999999999999999999999999999999998881 110
Q ss_pred --------CCC--------------CCC---------------c-------------cccccCCCcCChHHHHHHHHHHH
Q 000845 507 --------MLP--------------FGD---------------L-------------TQIGERGVNLSGGQKQRIQLARA 536 (1255)
Q Consensus 507 --------~lp--------------~gd---------------~-------------T~iGe~G~~LSGGQkqRIaLARA 536 (1255)
.+| .+. . ........+||||||||++||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 000 000 0 01223456899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 537 LYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 537 ly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
+..+|+++||||||++||+.+.+.+++ .+..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999887765 454443 6899999999999985 48999999999999999988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=276.10 Aligned_cols=162 Identities=31% Similarity=0.398 Sum_probs=133.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~------------ 506 (1255)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|.|.++|.+| .++.
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 689999999964 4799999999999999999999999999999999999999888 1110
Q ss_pred -----CCC--------------CC-----Cc-----------------cccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 -----MLP--------------FG-----DL-----------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 -----~lp--------------~g-----d~-----------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.++ .+ +. ........+||||||||++||||++.+|+++|
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 000 00 00 00123456899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|||||++||+++.+.+. +++..+. .++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 160 lDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 160 LDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred EcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999987775 5565543 3789999999999865 589999999999999999887753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=281.02 Aligned_cols=166 Identities=25% Similarity=0.376 Sum_probs=135.8
Q ss_pred EEEEeeEEEecCCC--CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC----------
Q 000845 445 IFIKSADLSWEADL--LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK---------- 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~--~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~---------- 506 (1255)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+| .++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999888 1211
Q ss_pred ------CCCCC-C-----cc----------------------------------c-cccCCCcCChHHHHHHHHHHHHcc
Q 000845 507 ------MLPFG-D-----LT----------------------------------Q-IGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 507 ------~lp~g-d-----~T----------------------------------~-iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
..++. + .| . ......+||||||||++||||++.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 01110 0 00 0 123467899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhhc
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 540 ~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
+|+++||||||++||+.+.+.+. +++..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999988775 4555543 3899999999999875 6899999999999999998887643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=279.05 Aligned_cols=163 Identities=28% Similarity=0.387 Sum_probs=134.9
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----------- 507 (1255)
++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+| .++..
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6789999999632 3699999999999999999999999999999999999999888 11100
Q ss_pred --CCCC------Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 508 --LPFG------DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 508 --lp~g------d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
+|+. +.| ........||||||||++||||++.+|+++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000 000 0123567899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhh
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|||||++||+.+.+.+++ ++..+. +|+|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 160 LDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999877764 454443 5899999999999988899999999999999999888754
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=237.50 Aligned_cols=236 Identities=21% Similarity=0.354 Sum_probs=176.7
Q ss_pred eEEEEEEEEEeCCCCCceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCCEEEEcC-----EeCCCCChHH-
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG-----LDITTIGLYD- 1076 (1255)
Q Consensus 1003 ~I~~~nvs~~Y~~~~~~vL~~is~~I~~Ge~vaIvG~sGsGKSTLl~lL~rl~~~~~G~I~idG-----~di~~i~~~~- 1076 (1255)
-++++++|..|.+.. -.+||||.+.|||..||||.||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 478899999997653 68999999999999999999999999999999999999999999875 3444444333
Q ss_pred ---hhcccEEEccCCccCCCchhhhcccCCCCChHHHHhccCchhHHHhccHHHHHHhhhcCccchhcCCCCCCChhHHH
Q 000845 1077 ---LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1077 ---lR~~i~~vpQdp~Lf~gTIr~Nl~~~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+|..-++|.|+|- .-+|-.....++.- |.+.....+..---++...++.++..-.+ +.+.+....||||.+|
T Consensus 84 R~L~RTeWG~VhQnP~---DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFSGGMqQ 158 (258)
T COG4107 84 RRLLRTEWGFVHQNPR---DGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFSGGMQQ 158 (258)
T ss_pred HHHhhhccceeecCcc---ccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccchHHHH
Confidence 3556799999994 11111111111111 11111000000000111223443332222 3455666889999999
Q ss_pred HHHHHHHHccCCCeEEEecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEeccCchhhhh-cCEEEEEeCCEEEEEcChhH
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDE~TS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1230 (1255)
|+.|||-|...|+++++||||-+||....+.+.+.++.... +-.+++|||++...+- +||.+||.+|+++|.|-.+.
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDr 238 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR 238 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccc
Confidence 99999999999999999999999999999999999987653 5689999999999875 99999999999999999999
Q ss_pred HhhcCChHHHHHHHH
Q 000845 1231 LLRRQDSLFAQLVKE 1245 (1255)
Q Consensus 1231 Ll~~~~~~f~~l~~~ 1245 (1255)
.+.+|.-.|.+|+-.
T Consensus 239 vLDDP~hPYTQLLVS 253 (258)
T COG4107 239 VLDDPHHPYTQLLVS 253 (258)
T ss_pred cccCCCCchHHHHHH
Confidence 999999899988754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=276.32 Aligned_cols=160 Identities=29% Similarity=0.477 Sum_probs=132.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~------------ 506 (1255)
++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|.|.++|.+|. ++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 368999999963 37999999999999999999999999999999999999998881 110
Q ss_pred -CCCC---------------------CC----------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 507 -MLPF---------------------GD----------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 507 -~lp~---------------------gd----------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.+|+ +. .........+||||||||++||||++.+|+++||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0000 00 001123456799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
||++||+.+.+.+. +.+..+. .++|+|++||+++.+. .||+|+++++|++++.|+.+++
T Consensus 158 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 158 PTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999988775 4554443 3799999999999987 5899999999999999998886
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=276.48 Aligned_cols=163 Identities=32% Similarity=0.449 Sum_probs=132.5
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~------------ 506 (1255)
++++|++++|+.. .++|+|+||+|++|++++|+||||||||||+++|.|.++|.+| .++.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 3678999999742 4699999999999999999999999999999999999999888 1110
Q ss_pred -------CCCC--------------C-C-----------------cc--ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 -------MLPF--------------G-D-----------------LT--QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 -------~lp~--------------g-d-----------------~T--~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.++. + + .. .....+.+||||||||++||||++.+|+++|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0000 0 0 00 1234467899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|||||++||+.+.+.+. +++..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 159 lDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 159 MDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred ecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999987665 4554443 3899999999999765 589999999999999999887753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=284.59 Aligned_cols=168 Identities=23% Similarity=0.324 Sum_probs=137.6
Q ss_pred ceEEEEeeEEEecCCC-------CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC-
Q 000845 443 HSIFIKSADLSWEADL-------LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML- 508 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~-------~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l- 508 (1255)
..++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|.+++.+| .|+..+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3689999999997421 24699999999999999999999999999999999999999888 121110
Q ss_pred --------------CCCC-------cc------------------------------------ccccCCCcCChHHHHHH
Q 000845 509 --------------PFGD-------LT------------------------------------QIGERGVNLSGGQKQRI 531 (1255)
Q Consensus 509 --------------p~gd-------~T------------------------------------~iGe~G~~LSGGQkqRI 531 (1255)
++.. .| ........|||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 0000 00 01223568999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 532 aLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
+||||+..+|+++|+||||++||+.+.+.|++ ++..+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999988875 444443 3899999999999986 5899999999999999999998
Q ss_pred hhc
Q 000845 609 LVT 611 (1255)
Q Consensus 609 ~~~ 611 (1255)
...
T Consensus 243 ~~~ 245 (327)
T PRK11308 243 FNN 245 (327)
T ss_pred hcC
Confidence 754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=274.33 Aligned_cols=161 Identities=29% Similarity=0.433 Sum_probs=131.4
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~~----------- 507 (1255)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|.++|.+|. ++..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468899999963 37999999999999999999999999999999999999998881 1100
Q ss_pred --CCC---------------------CC-----------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEEe
Q 000845 508 --LPF---------------------GD-----------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 508 --lp~---------------------gd-----------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLD 547 (1255)
+|+ +. ......+..+||||||||++||||+..+|+++|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 000 00 00112345689999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 548 DPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 548 dp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
|||++||+.+.+.+. +++..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 158 EPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 158 EPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999987775 4554443 5899999999999865 58999999999999999877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=288.44 Aligned_cols=163 Identities=27% Similarity=0.404 Sum_probs=134.5
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+. .++|+|+||++++|++++|+|||||||||||++|.|.++|.+| .++.
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999963 3699999999999999999999999999999999999999888 1111
Q ss_pred ------CCCC--------------CC------------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEEeC
Q 000845 507 ------MLPF--------------GD------------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 507 ------~lp~--------------gd------------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDd 548 (1255)
.+|. +. .........+|||||||||+||||+..+|+++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1111 00 000123456899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 549 p~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
|||+||+.+.+.+.+ .+..+. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 160 Pts~LD~~~~~~l~~-~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 160 PLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999887764 454443 3899999999998765 689999999999999999988764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=272.97 Aligned_cols=154 Identities=33% Similarity=0.463 Sum_probs=124.7
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCC--------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLP-------- 509 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp-------- 509 (1255)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|.++|.+| .++...+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 36889999996421 14799999999999999999999999999999999999999888 1111100
Q ss_pred --------CC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 510 --------FG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 510 --------~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
+. ..| .......+||||||||++||||++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 00 000 0123457899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCEE
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEI 599 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~i 599 (1255)
++||||||++||+.+.+.+. +++..+. +++|+|++||+++.+..||+|++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999987775 5565554 38999999999998888899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=274.45 Aligned_cols=161 Identities=25% Similarity=0.380 Sum_probs=132.0
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~~----------- 507 (1255)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|.|.++|.+|. ++..
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468899999963 36999999999999999999999999999999999999998881 1100
Q ss_pred --CCC---------------------CC------------------ccccccCCCcCChHHHHHHHHHHHHccCCCEEEE
Q 000845 508 --LPF---------------------GD------------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 508 --lp~---------------------gd------------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLL 546 (1255)
.|+ +. .........+||||||||++||||+..+|+++||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 000 00 0012334578999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 547 Ddp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
||||++||+.+.+.+. +++..+. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 158 DEPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 158 DEPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999987775 4554443 5899999999998765 58999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=274.16 Aligned_cols=161 Identities=35% Similarity=0.509 Sum_probs=132.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK------------ 506 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~------------ 506 (1255)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|.|.++|.+|. ++.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 578999999962 247999999999999999999999999999999999999998881 110
Q ss_pred ----------CCCC---------C----------------C--c-------------cccccCCCcCChHHHHHHHHHHH
Q 000845 507 ----------MLPF---------G----------------D--L-------------TQIGERGVNLSGGQKQRIQLARA 536 (1255)
Q Consensus 507 ----------~lp~---------g----------------d--~-------------T~iGe~G~~LSGGQkqRIaLARA 536 (1255)
.+|. + . . ........+||||||||++||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 0000 0 0 0 01123567899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHH
Q 000845 537 LYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 537 ly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el 608 (1255)
++.+|+++||||||++||+.+.+.+. +++..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999987775 5555543 3799999999999875 6899999999999999998876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=275.45 Aligned_cols=162 Identities=30% Similarity=0.442 Sum_probs=134.2
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCC-----CC------cccCC------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRL-----QG------MDLKM------ 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~-----~G------~Di~~------ 507 (1255)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|.|.++|. +| .++..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 678999999964 36999999999999999999999999999999999999887 77 11110
Q ss_pred --------CC--------------------CCC-------------------c----cccccCCCcCChHHHHHHHHHHH
Q 000845 508 --------LP--------------------FGD-------------------L----TQIGERGVNLSGGQKQRIQLARA 536 (1255)
Q Consensus 508 --------lp--------------------~gd-------------------~----T~iGe~G~~LSGGQkqRIaLARA 536 (1255)
.| .+. . ........+||||||||++||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 00 010 0 11233467899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 537 LYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 537 ly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
++.+|+++||||||++||+.+.+.++ +++..+.+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999987765 56666555689999999999875 589999999999999999888753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=256.99 Aligned_cols=148 Identities=30% Similarity=0.445 Sum_probs=122.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc-------ccCCCCCC----Cc
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------DLKMLPFG----DL 513 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~-------Di~~lp~g----d~ 513 (1255)
++++|++++|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|++++.+|. .+..+++. ..
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999643 47999999999999999999999999999999999999999981 12122211 11
Q ss_pred ccccc----CCCcCChHHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccccCC
Q 000845 514 TQIGE----RGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFD 589 (1255)
Q Consensus 514 T~iGe----~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD 589 (1255)
|.... ....||||||||++||||++++|+++||||||++||+.+.+.+. +++..+ ++|+|++||+++....||
T Consensus 79 tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~--~~tiiivsh~~~~~~~~d 155 (166)
T cd03223 79 TLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKEL--GITVISVGHRPSLWKFHD 155 (166)
T ss_pred cHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHHh--CCEEEEEeCChhHHhhCC
Confidence 21111 56789999999999999999999999999999999999988776 455444 699999999998888899
Q ss_pred EEEEEeCC
Q 000845 590 SILLISGG 597 (1255)
Q Consensus 590 ~Iivl~~G 597 (1255)
+|++|++|
T Consensus 156 ~i~~l~~~ 163 (166)
T cd03223 156 RVLDLDGE 163 (166)
T ss_pred EEEEEcCC
Confidence 99999864
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=275.99 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=136.7
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+... +++|+|+||++++||+++|+||||||||||+++|.|.++|.+| .++.
T Consensus 7 ~l~i~~l~~~~~~~~-~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDA-SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 589999999997532 4699999999999999999999999999999999999999888 1110
Q ss_pred ---------CCCC--------------CCc-----c-------------ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 ---------MLPF--------------GDL-----T-------------QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 ---------~lp~--------------gd~-----T-------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
.++. +.. . .......+||||||||++||||++.+|+++|
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000 000 0 0123457899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||||++||+.+.+.++ +++..+. +++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 166 LDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 166 LDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999988776 4555543 37999999999998878999999999999999999887643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=286.59 Aligned_cols=162 Identities=35% Similarity=0.480 Sum_probs=134.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------ccc-------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL------------- 505 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di------------- 505 (1255)
++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+++|.+| .|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999964 3699999999999999999999999999999999999999988 111
Q ss_pred ----CCCCC---------C--------Ccc------c-------------cccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 506 ----KMLPF---------G--------DLT------Q-------------IGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 506 ----~~lp~---------g--------d~T------~-------------iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
..+|. + ..+ . ......+|||||||||+||||++.+|+++|
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11111 0 000 0 123457899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||||||+||+.+.+.+. +.+..+.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 160 LDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 160 LDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred EeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999988775 45555443 789999999999865 589999999999999999998864
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=271.78 Aligned_cols=160 Identities=36% Similarity=0.443 Sum_probs=128.7
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccC-------CCCC
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLK-------MLPF 510 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~-------~lp~ 510 (1255)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|.+|. ++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 36889999996421 147999999999999999999999999999999999999998881 110 0010
Q ss_pred C-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcCC
Q 000845 511 G-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551 (1255)
Q Consensus 511 g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~S 551 (1255)
. ..| .......+||||||||++||||++.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 0 000 1123457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEe--CCEEEEecCh
Q 000845 552 ALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLIS--GGEIIQAATY 605 (1255)
Q Consensus 552 aLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~--~G~i~~~G~~ 605 (1255)
+||+.+.+.+++ ++..+. .++|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 161 ~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 161 ALDALTREQLQE-ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999887764 554442 3899999999999765 689999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=273.65 Aligned_cols=162 Identities=30% Similarity=0.458 Sum_probs=132.8
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCCc------ccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM------DLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G~------Di~~----------- 507 (1255)
++++|++++|+.+ +++|+|+||++++|++++|+||||||||||+++|.|.++|.+|. ++..
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 3688999999641 47999999999999999999999999999999999999988871 1110
Q ss_pred -----------CCC----------------------C---C--c-------------cccccCCCcCChHHHHHHHHHHH
Q 000845 508 -----------LPF----------------------G---D--L-------------TQIGERGVNLSGGQKQRIQLARA 536 (1255)
Q Consensus 508 -----------lp~----------------------g---d--~-------------T~iGe~G~~LSGGQkqRIaLARA 536 (1255)
++. + + . ......+.+||||||||++||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 000 0 0 0 01123567899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 537 LYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 537 ly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
+..+|+++|||||||+||+.+.+.+++ .+..+. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999887764 554443 3899999999999987 68999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=253.44 Aligned_cols=165 Identities=31% Similarity=0.463 Sum_probs=139.8
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCCC--------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLP-------- 509 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~lp-------- 509 (1255)
-.+++|++..|.. ..+|+++||++++||+++++|+||+||||||++|.|..++.+| .|+..+|
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3578899999975 4799999999999999999999999999999999999999877 4443332
Q ss_pred -----CCCc---------------------------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 510 -----FGDL---------------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 510 -----~gd~---------------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
+|.. .....++.+|||||+|-+|+||||.++|+++|
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 1110 11245789999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCc-cccCCEEEEEeCCEEEEecChhHHhhcc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDF-LPAFDSILLISGGEIIQAATYDHLLVTS 612 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH~l~~-l~~aD~Iivl~~G~i~~~G~~~el~~~~ 612 (1255)
||||+.+|-|...+.||+. +..+.+ +-|++||-++..+ ++.+|+.+||++|+|+..|+.+++....
T Consensus 160 LDEPs~GLaP~iv~~I~~~-i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEA-IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred ecCCccCcCHHHHHHHHHH-HHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999854 555543 5699999999987 5678999999999999999999997653
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=270.70 Aligned_cols=155 Identities=26% Similarity=0.384 Sum_probs=126.6
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC----------C
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----------L 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----------l 508 (1255)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|.+| .++.. +
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468899999964 3799999999999999999999999999999999999999888 11110 0
Q ss_pred CCC-----Cc----------------------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCc
Q 000845 509 PFG-----DL----------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 509 p~g-----d~----------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp 549 (1255)
|+. .. ........+||||||||++||||++.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000 00 011234568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEec
Q 000845 550 FSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAA 603 (1255)
Q Consensus 550 ~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G 603 (1255)
|++||+.+.+.+.+ ++..+. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 158 t~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 158 LSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999887764 554443 3899999999999876 58999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=270.99 Aligned_cols=153 Identities=29% Similarity=0.435 Sum_probs=124.3
Q ss_pred EEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC-----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM----------- 507 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~----------- 507 (1255)
++++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|.|.++|.+| .++..
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6789999999643 23699999999999999999999999999999999999999888 11110
Q ss_pred ----CCCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 508 ----LPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 508 ----lp~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
.|+. +.| .......+||||||||++||||++.+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000 000 012245689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCccc-cCCEEEEEeCCEE
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLP-AFDSILLISGGEI 599 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i 599 (1255)
||||||++||+.+.+.+.+ .+..+ .+++|+|++||+++.+. .||+|++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999887764 55544 34899999999999886 5899999999974
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=277.54 Aligned_cols=166 Identities=27% Similarity=0.402 Sum_probs=136.4
Q ss_pred eEEEEeeEEEecCC------CCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----
Q 000845 444 SIFIKSADLSWEAD------LLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~------~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----- 506 (1255)
.++++|++++|+.. .++++|+|+||++++||+++|+|+||||||||+++|.|.++|.+| .++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 135799999999999999999999999999999999999999888 1110
Q ss_pred ------------------CCCCCCcc------------------------------------ccccCCCcCChHHHHHHH
Q 000845 507 ------------------MLPFGDLT------------------------------------QIGERGVNLSGGQKQRIQ 532 (1255)
Q Consensus 507 ------------------~lp~gd~T------------------------------------~iGe~G~~LSGGQkqRIa 532 (1255)
.++. +.| .....+.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNP-RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 0110 000 012345789999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHh
Q 000845 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 533 LARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~ 609 (1255)
||||++++|+++||||||++||+.+.+.+. +++..+. .++|+|++||+++.+. .||++++|++|++++.|+.+++.
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999999999999999999999977665 5565543 3899999999999986 58999999999999999999987
Q ss_pred hc
Q 000845 610 VT 611 (1255)
Q Consensus 610 ~~ 611 (1255)
..
T Consensus 240 ~~ 241 (265)
T TIGR02769 240 SF 241 (265)
T ss_pred CC
Confidence 53
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=277.88 Aligned_cols=162 Identities=27% Similarity=0.400 Sum_probs=133.1
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+.. +++|+|+||++++||+++|+|+||||||||+++|.|.++|.+| .++.
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 58899999999632 4699999999999999999999999999999999999999988 1110
Q ss_pred -CCCCCC------cc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 507 -MLPFGD------LT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 507 -~lp~gd------~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
..++.. .| ........||||||||++||||+..+|+++|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 001000 00 0112346899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhh-cCCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHH
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHL 608 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el 608 (1255)
|||||++||+.+.+.+. +++..+ .+|+|+|++||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 162 lDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999988775 555544 3489999999999987 46999999999999999998654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=276.38 Aligned_cols=167 Identities=29% Similarity=0.388 Sum_probs=137.7
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC---------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM--------- 507 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~--------- 507 (1255)
..++++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+| .++..
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 358999999999642 24799999999999999999999999999999999999999988 11110
Q ss_pred ---CCCC------Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCCEE
Q 000845 508 ---LPFG------DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDIY 544 (1255)
Q Consensus 508 ---lp~g------d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~il 544 (1255)
.++. ..| .+.....+||||||||++||||+..+|+++
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 000 122345689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhhc-C-CcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 545 LLDdp~SaLD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
||||||++||+.+.+.++ +++..+. + ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 163 lLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 163 ILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999988776 4555544 2 8999999999998888999999999999999998887643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=275.37 Aligned_cols=164 Identities=26% Similarity=0.408 Sum_probs=134.0
Q ss_pred ceEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCC-----CCCC------cccCC----
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQG------MDLKM---- 507 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~-----~~~G------~Di~~---- 507 (1255)
..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|.++ +.+| .++..
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 369999999999999999999999999999999999864 4566 11110
Q ss_pred ----------CCC--------------------C--C---------------------ccccccCCCcCChHHHHHHHHH
Q 000845 508 ----------LPF--------------------G--D---------------------LTQIGERGVNLSGGQKQRIQLA 534 (1255)
Q Consensus 508 ----------lp~--------------------g--d---------------------~T~iGe~G~~LSGGQkqRIaLA 534 (1255)
+|+ + + .+.......+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 000 0 0 0012334678999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhcCCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 535 RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 535 RAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
||++.+|+++||||||++||+.+.+.+. +.+..+.+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999987775 56655556899999999999885 589999999999999999888753
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=273.14 Aligned_cols=163 Identities=28% Similarity=0.402 Sum_probs=134.3
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC---------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l--------- 508 (1255)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|.+| .|+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 4699999999999999999999999999999999999999888 111100
Q ss_pred ---C--------------------CCCc---------------cccccCCCcCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 000845 509 ---P--------------------FGDL---------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPF 550 (1255)
Q Consensus 509 ---p--------------------~gd~---------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilLLDdp~ 550 (1255)
| .+.. ........+||||||||++||||++.+|+++||||||
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 0000 0112345789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEecChhHHhh
Q 000845 551 SALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 551 SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G~~~el~~ 610 (1255)
++||+.+.+.+. +++..+. .|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 160 ~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 160 SALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred ccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999987665 5555543 3899999999999876 589999999999999999888764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=270.45 Aligned_cols=155 Identities=30% Similarity=0.466 Sum_probs=126.4
Q ss_pred EEEEeeEEEecCCC-CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCCC---------
Q 000845 445 IFIKSADLSWEADL-LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~-~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~l--------- 508 (1255)
++++|++++|+... ..++|+|+||++++|++++|+||||||||||+++|.|.++|.+| .++..+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999888 111100
Q ss_pred -------CCC-----Ccc----------------------------------ccccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 509 -------PFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 509 -------p~g-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
++. ..| .......+||||||||++||||++.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 000 000 0123457899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccccCCEEEEEeCCEEE
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEII 600 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~i~ 600 (1255)
++||||||++||+.+.+.+. +++..+. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 162 illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999987775 5555543 379999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=288.87 Aligned_cols=164 Identities=30% Similarity=0.448 Sum_probs=135.9
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccC-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~----------- 506 (1255)
.++++|++++|+. +++|+|+||++++||+++|+|||||||||||++|.|.++|.+| .++.
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999963 4799999999999999999999999999999999999999988 0100
Q ss_pred ----------------------CCCC----C-----Cccc-------------cccCCCcCChHHHHHHHHHHHHccCCC
Q 000845 507 ----------------------MLPF----G-----DLTQ-------------IGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 507 ----------------------~lp~----g-----d~T~-------------iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
..|. + +... ......+||||||||++||||++++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 0000 0 0000 123456899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhhc-CCcEEEEEccCCCcc-ccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 543 ilLLDdp~SaLD~~~~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
++||||||++||+.+...+. ++++.+. +++|+|++||+++.+ +.||+|++|++|++++.|++++++..
T Consensus 160 iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred EEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999999999999987775 5555543 589999999999998 46899999999999999999998743
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=283.11 Aligned_cols=169 Identities=25% Similarity=0.393 Sum_probs=138.2
Q ss_pred cceEEEEeeEEEecCCC----------CCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------ccc
Q 000845 442 EHSIFIKSADLSWEADL----------LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL 505 (1255)
Q Consensus 442 ~~~i~~~~~~f~w~~~~----------~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di 505 (1255)
+..++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|.+++.+| .|+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 35689999999996421 24689999999999999999999999999999999999999888 111
Q ss_pred C------------------------CCCCC---------------Ccc--------------------ccccCCCcCChH
Q 000845 506 K------------------------MLPFG---------------DLT--------------------QIGERGVNLSGG 526 (1255)
Q Consensus 506 ~------------------------~lp~g---------------d~T--------------------~iGe~G~~LSGG 526 (1255)
. ..|.. +.+ .......+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 1 01100 000 112345789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhhc--CCcEEEEEccCCCccc-cCCEEEEEeCCEEEEec
Q 000845 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAA 603 (1255)
Q Consensus 527 QkqRIaLARAly~~~~ilLLDdp~SaLD~~~~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~i~~~G 603 (1255)
|||||+||||++.+|+++|+|||||+||+.+.+.+.+ ++..+. .+.|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999988864 555543 3899999999999986 48999999999999999
Q ss_pred ChhHHhhc
Q 000845 604 TYDHLLVT 611 (1255)
Q Consensus 604 ~~~el~~~ 611 (1255)
+.+++...
T Consensus 245 ~~~~i~~~ 252 (331)
T PRK15079 245 TYDEVYHN 252 (331)
T ss_pred CHHHHHcC
Confidence 99998754
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=277.28 Aligned_cols=167 Identities=28% Similarity=0.350 Sum_probs=137.6
Q ss_pred eEEEEeeEEEecCCCCCCccccceeeeeCCcEEEEEccCCCCHHHHHHHHhccCCCCCC------cccCC----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM---------- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~IvG~~GsGKSTLL~~llGe~~~~~G------~Di~~---------- 507 (1255)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|.++|.+| .++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58899999999753334699999999999999999999999999999999999999988 11100
Q ss_pred ----------CCC--------------CCc------------------cccccCCCcCChHHHHHHHHHHHHccCCCEEE
Q 000845 508 ----------LPF--------------GDL------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 508 ----------lp~--------------gd~------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~ilL 545 (1255)
++. +.. -........||||||||++||||+..+|+++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 000 000 00123457899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhhcC--CcEEEEEccCCCccccCCEEEEEeCCEEEEecChhHHhhc
Q 000845 546 LDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 546 LDdp~SaLD~~~~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~~aD~Iivl~~G~i~~~G~~~el~~~ 611 (1255)
|||||++||+.+.+.+. +++..+.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 164 lDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 164 LDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999988775 45555433 8999999999999888999999999999999999887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1255 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-34 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-19 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-33 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-08 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-30 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-30 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-29 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-28 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-26 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-16 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-26 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-16 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-24 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-22 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-22 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-22 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-22 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-22 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-22 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-22 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-22 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-22 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 5e-22 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-21 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-21 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-21 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-19 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-19 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-19 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-19 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-19 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-19 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-19 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-17 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-17 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-17 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-17 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-17 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-16 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-16 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-12 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-11 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-11 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-04 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-09 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 8e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 1e-04 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 6e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 6e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 7e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1255 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-136 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 6e-12 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-93 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-63 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-17 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-88 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-31 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-80 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-28 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-79 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-27 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-77 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-21 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-12 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-71 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-20 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-13 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-70 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-22 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-13 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-69 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-15 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-14 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 9e-65 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 9e-17 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-60 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 7e-18 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-59 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-18 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-05 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-55 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-17 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-55 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-16 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-50 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-17 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-04 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-47 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 9e-19 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-04 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-27 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-04 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-26 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-09 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-05 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-14 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-21 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-15 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-06 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-20 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-20 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-11 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-08 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-18 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-14 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-15 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-08 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-04 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-15 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 9e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 9e-05 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-14 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-04 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-13 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-10 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-05 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 9e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-07 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-06 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-04 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 8e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-136
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 7/252 (2%)
Query: 994 PAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR 1053
WP G++ + DL +Y +L I+ + G ++G++GRTGSGK+TL+SA R
Sbjct: 10 KDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 1054 LVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEV 1113
L+ G +I IDG+ +I L R G+IPQ +FSG+ R NLDP + +DQEIW
Sbjct: 70 LLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW-- 126
Query: 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
+V ++ LR VI++ LD ++V G S G +QL+ L R VL + +IL+LDE
Sbjct: 127 ----KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 1174 TASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
+A +D T I++ T+++ FA+CTVI RI +++C+ L + + K+ +YD +L
Sbjct: 183 SAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242
Query: 1234 RQDSLFAQLVKE 1245
F
Sbjct: 243 YPADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 9/176 (5%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P + + G LS G KQ + LAR++ I LLD+P + LD T + + +
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ-IIRRTLK 199
Query: 568 GALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ-EFQDLVNAHKETM 626
A + TV+L +++ + D L+I ++ Q + L F +
Sbjct: 200 QAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN 259
Query: 627 GPETFGEHVSSKEDENEVKKVEDEGHNNTSPADQLIKKEERETGDT-GLKPYIDYL 681
++ D+ +V+ P ++ + + G L ++L
Sbjct: 260 FLPVKVT--ATAIDQVQVELPMPNRQQVWLP----VESRDVQVGANMSLGIRPEHL 309
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 459 LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
N L NI+ + P ++ + G G+GKSTLL+A L
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = 3e-93
Identities = 173/797 (21%), Positives = 339/797 (42%), Gaps = 100/797 (12%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP T +GERG LSGGQKQRI +ARAL ++ I LLD+ SALD ++ V
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-----VQ 566
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHK 623
AL K +T +++ H++ + D I GG I++ +D L+ + LV
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 624 ETMGPETFGEHVSSKEDENEVK-----------KVEDEGHNNTSPADQLIKKEERETGDT 672
E E SK++ + + + + P DQ K +E D
Sbjct: 627 AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDE 686
Query: 673 GLKPY----IDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIAT-----YIPSTSISRL 723
+ P I L+ + YF + F +I Q S+ + ++
Sbjct: 687 DVPPASFWRILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQR 745
Query: 724 KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRA----PMAFYDST-- 777
+ ++S + + + + FL + +A E + +L +F++ ++++D
Sbjct: 746 QNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN 805
Query: 778 PVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIY 834
G + +R+++D + + + + + + ++ WQ +LL IVP+I
Sbjct: 806 TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA 865
Query: 835 LIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERF---FAKNLD- 890
+ V++ + + S +A+ E + T+ + E++F +A++L
Sbjct: 866 IAGVVEMKMLSGQALKDKKELEGSGKIAT---EAIENFRTVVSLTREQKFETMYAQSLQI 922
Query: 891 -----LIDAYASSFFHSFTAREWLIQRLETLSAIVLATSALC----TTLLHKGHKGAGY- 940
+ A+ SFT A++ + A L+ +
Sbjct: 923 PYRNAMKKAHVFGITFSFT------------QAMMYFSYAAAFRFGAYLVTQQLMTFENV 970
Query: 941 --TGMALSFG-LSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPD 997
A+ FG +++ ++ + VS + + + E + S
Sbjct: 971 LLVFSAIVFGAMAVGQVSSFAPD----YAKATVSASHIIRIIEKTPE----IDSYSTQGL 1022
Query: 998 WPPT--GKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR 1053
P G V+ + Y RP+ P VL+G++ + G + +VG +G GK+T++ L R
Sbjct: 1023 KPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 1054 LVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEI 1110
+P G + +DG +I + + LR+ LGI+ Q+P LF S+ N+ D + +EI
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 1111 WEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL 1170
++ + + I + ++ V G S GQ+Q I + R ++R+ IL+L
Sbjct: 1142 VR------AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 1171 DEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDE 1227
DEAT+++D ++ ++Q + + T I +AHR++T+ + ++++ + +GK+ E + +
Sbjct: 1196 DEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255
Query: 1228 PKKLLRRQDSLFAQLVK 1244
L Q ++ +V
Sbjct: 1256 ----LLAQKGIYFSMVS 1268
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 4e-63
Identities = 109/540 (20%), Positives = 223/540 (41%), Gaps = 44/540 (8%)
Query: 724 KLVIVYSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRIL 783
Y+GIG G++ + + I K ++ + ++D VG +
Sbjct: 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELN 168
Query: 784 SRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVIVPMIYLIIVLQNYY 843
+R++ D+S I+ + K + F++ W++ LVI+ + ++ + +
Sbjct: 169 TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIW 228
Query: 844 FATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERF---FAKNLDLIDAYA--SS 898
+ + E +A T+ AF +++ + NL+ +
Sbjct: 229 AKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKA 288
Query: 899 FFHSFTAREWLIQRLETLSAIVLATSALC----TTLLHKGHKGAGY---TGMALSFG-LS 950
+ + + ++ A+ AL T+L+ G ++ G S
Sbjct: 289 ITANIS--------MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFS 340
Query: 951 LNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQ 1010
+ N + + + + + + G +E ++
Sbjct: 341 VGQASPNIE----AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIH 394
Query: 1011 IRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD 1068
Y R +L+G+ + G + +VG +G GK+T + + RL +P G + IDG D
Sbjct: 395 FSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 1069 ITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP-LSQFTDQEIWEVTIPSQVLEKCQLRE 1127
I TI + LR +G++ Q+P LF+ ++ N+ T EI + + +
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY------D 507
Query: 1128 VIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQN 1187
I + D+LV + GA S GQ+Q I + R ++R +IL+LDEAT+++D +++++Q
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPKKLLRRQDSLFAQLVK 1244
+ + T I +AHR++TV + +++ G +VE +DE L R+ ++ +LV
Sbjct: 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE----LMREKGIYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP T++G++G LSGGQKQRI +ARAL + I LLD+ SALD ++ K V
Sbjct: 1157 LPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV-----VQ 1211
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAH 622
AL K +T +++ H++ + D I++I G++ + T+ LL + +V+
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 84/535 (15%), Positives = 168/535 (31%), Gaps = 78/535 (14%)
Query: 24 QNDALYSPLRREEIDANEDDDDGDHVTPFDKAGLLRKITFWWLDPLMKKGKDKVLEDIDV 83
+ +Y L + NE + + D+ +D L KD I
Sbjct: 613 REKGIYFKLVMTQTAGNEIELGNEACKSKDE-----------IDNLDMSSKDSGSSLIRR 661
Query: 84 PQLRLADRATTCYSLFIEELNDWNQKRPSAHPSILRALISCHWKSILFSGFFALIKVISI 143
R + + ++ P A + L S W + F A+I
Sbjct: 662 RSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQ 721
Query: 144 SAGPLF----LKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKI 199
A + + F + E + ++ ++ + + +F Q G
Sbjct: 722 PAFSVIFSKVVGVFTNGGPPETQ-RQNSNLFSLLFLILGIISFIT---FFLQGFTFGK-- 775
Query: 200 RSSLCAAISSKQLRLSNAAKMM-----------HTSGDIVNYVTVDAYRIGEFPFWFHQI 248
I +K+LR M+ +T+G + + DA ++
Sbjct: 776 ----AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGA---TGSR 828
Query: 249 WSTSLQLCIAVVV-----VYYS--VGLATIATLIVMIL-TVLGNSPLAKLQHKYQETFMT 300
+ Q + + Y + L +A + ++ + V+ L+ K ++
Sbjct: 829 LAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG 888
Query: 301 AQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSS 360
+ K TE + N + + + F + + + + F +
Sbjct: 889 SG----KIATEAIENFRTVVSLTREQKF---ETMYAQSLQIPYRNAMKKAHVFGITFSFT 941
Query: 361 PILIGAATLLTCYFLGIPL------NPSNVFTFLATL----RILQEPIRLLPDVFGAFIE 410
++ + F G L NV + + + + PD + +
Sbjct: 942 QAMMYFSYAAAFRF-GAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD----YAK 996
Query: 411 AKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEV 470
A VS I +E +S Q LE ++ ++ P L+ ++LEV
Sbjct: 997 ATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEV 1056
Query: 471 KPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGDL-TQIG 517
K + A+ G G GKST++ + G + L G ++K L L Q+G
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGKEIKQLNVQWLRAQLG 1110
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 66/419 (15%), Positives = 135/419 (32%), Gaps = 48/419 (11%)
Query: 128 SILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRH 187
++F + + + + E+ + A + +
Sbjct: 68 MLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYI 127
Query: 188 WFFQSRLTGL----KIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRI----G 239
L KIR AI + +H G++ +T D +I G
Sbjct: 128 QVSFWCLAAGRQIHKIRQKFFHAI----MNQEIGWFDVHDVGELNTRLTDDVSKINEGIG 183
Query: 240 E-FPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETF 298
+ +F + ++ + T+ L + + L AK+ + +
Sbjct: 184 DKIGMFFQAM----ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKE 239
Query: 299 MTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFW 358
+ A K EVL ++ + + +K E Y L+ K +
Sbjct: 240 LHAYAKAGAVAEEVLAAIRTVIAF--------GGQKKELERYN--NNLEEAKRLGIKKAI 289
Query: 359 SSPILIGAATLLT--CYFLGI----------PLNPSNVFTFLATLRILQEPIRLLPDVFG 406
++ I +GAA LL Y L + V T ++ I +
Sbjct: 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349
Query: 407 AFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNI 466
AF A+ + + ++ +S + ++ ++ K+ S+ + L+ +
Sbjct: 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGL 409
Query: 467 NLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGDL-TQIG 517
NL+VK + A+ G G GKST + + G + + G D++ + L IG
Sbjct: 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV-SIDGQDIRTINVRYLREIIG 467
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 7e-88
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 47/287 (16%)
Query: 410 EAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLE 469
+V ++ + F E + + + + + S S S + L P L++IN +
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNR-KTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 470 VKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM-------------------------- 503
++ + A+ G GAGK++LL I+GEL +G
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 504 --------------------DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543
D+ D +GE G+ LSGGQ+ RI LARA+Y+D D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 544 YLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAA 603
YLLD PF LD T K +F V ++ KT +LVT +++ L D IL++ G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 604 TYDHLLVTSQEFQDLVNAHKETMGPETFGEHVSSKEDENEVKKVEDE 650
T+ L +F + + E + D
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 34/289 (11%)
Query: 970 VSVERLNQYMR--IPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCT 1027
V +E + + + Q N+ + + + P VL+ I
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
E G + V G TG+GKT+L+ + +EP+ GKI G + Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
+ G+++ N+ + D+ + V++ CQL E I + E + ++ + G
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYR-----SVIKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS-ILQNTIRREFANCTVITVAHRIA 1206
S GQR I L R V + + +LD +D T+ I ++ + + AN T I V ++
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 1207 TVMDCNMVLSMSDGKLVE---YDEPKKLLRRQDSLFAQLVKEYWSHAEK 1252
+ + +L + +G + E L+ F+ + S +
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSE----LQNLRPDFSSKLMGCDSFDQF 265
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 3e-80
Identities = 80/233 (34%), Positives = 117/233 (50%), Gaps = 50/233 (21%)
Query: 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
+SI +++A +W PTL I + A+ G+VG GKS+LL+A+L E+ +++G
Sbjct: 2 NSITVRNATFTWARSD-PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 503 M-----------------------------------------------DLKMLPFGDLTQ 515
DL++LP GD T+
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 516 IGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV--MGALSKK 573
IGE+GVNLSGGQKQR+ LARA+Y + DIYL DDP SA+DA K +F + G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 574 TVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAHKETM 626
T +LVTH + +LP D I+++SGG+I + +Y LL F + + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHH 233
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 33/260 (12%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+ + + + + P L GIT + G + VVG+ G GK++L+SAL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL--SQFTDQEIWEVTIPSQV 1119
+ I G ++ +PQ + + S+R N+ L Q ++ + V
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI--LFGCQL-EEPYYR-----SV 100
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++ C L ++ G + + + G N S GQ+Q + L R V I + D+ +++D
Sbjct: 101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
Query: 1180 ATDS-ILQNTI--RREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPKKLLR 1233
I +N I + N T I V H ++ + ++++ MS GK+ E Y E L
Sbjct: 161 HVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE----LL 216
Query: 1234 RQDSLFAQLVKEYWSHAEKH 1253
+D FA+ ++ Y SH H
Sbjct: 217 ARDGAFAEFLRTYASHHHHH 236
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 2e-79
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 48/227 (21%)
Query: 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQ 501
+ +++ WE P L++IN +++ + A+ G GAGK++LL I+GEL +
Sbjct: 4 TTEVVMENVTAFWEEGG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 502 GM-----------------------------------------------DLKMLPFGDLT 514
G D+ D
Sbjct: 63 GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 515 QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKT 574
+GE G+ LSGGQ+ RI LARA+Y+D D+YLLD PF LD T K +F V ++ KT
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 575 VLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
+LVT +++ L D IL++ G T+ L +F +
Sbjct: 183 RILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
T +V + ++ + VL+ I E G + V G TG+GKT+L+ + +EP+ G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1061 KIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPS 1117
KI G + Q + G+++ N+ D+ +
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSY----DEYRYR----- 101
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
V++ CQL E I + E + ++ + G S GQR I L R V + + +LD +
Sbjct: 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 1178 DNATDS-ILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
D T+ I ++ + + AN T I V ++ + + +L + +G Y +L Q
Sbjct: 162 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQP 221
Query: 1237 SLFAQLV 1243
++L+
Sbjct: 222 DFSSKLM 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 7e-77
Identities = 123/585 (21%), Positives = 237/585 (40%), Gaps = 65/585 (11%)
Query: 674 LKPYIDYLSHKKGFLYFT-----LSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIV 728
+K Y+ ++ K ++ T + ++ +++ + K+ +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLI--PLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 729 YSGIGIGMMFLLLTR---SFLVVYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGR 781
IGI + ++ R F+ YL S I Y + L+ FY + VG+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 782 ILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLIIV 838
++SRV +D+ + + +I ++ L + L I P L +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 839 LQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNE----ERFFAKNLDLIDA 894
+F ++L R + + L E V G +++F E + F KN + +
Sbjct: 180 ---VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236
Query: 895 Y-----ASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGL 949
+++ + T++ I L G+ G +F
Sbjct: 237 ALKHTRWNAYSFAAI---------NTVTDIGPIIVIGVGAYL--AISGSITVGTLAAFVG 285
Query: 950 SLNDFL-----VYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKV 1004
L + + S++R+ Q + E ++ P G++
Sbjct: 286 YLELLFGPLRRLVASFTTLTQS--FASMDRVFQLI---DEDYDIKNGVGAQPIEIKQGRI 340
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
+I + +Y N +L+ I + E G + VG +G GK+TLI+ + R + T G+I+I
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 1065 DGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN-----LDPLSQFTDQEIWEVTIPSQV 1119
DG +I LR+ +G++ QD LFS +V+ N TD+E+ E
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAA----- 451
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
+ + I +G D+ V + G S GQ+Q + + R+ L IL+LDEAT+++D
Sbjct: 452 -KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
Query: 1180 ATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
++SI+Q + + T + VAHR++T+ + ++ + +G +VE
Sbjct: 511 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-21
Identities = 79/447 (17%), Positives = 161/447 (36%), Gaps = 75/447 (16%)
Query: 117 ILRALISC---HWKSILFSGFFALIKVISISAGPLFLKAFI------SAAEGEIIFKYEI 167
+++ + + I + +IK PL +K I A + +
Sbjct: 1 MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLT 60
Query: 168 YSLAISLFLVKCVESLAGRHWFFQSRLT---GLKIRSSLCAAISSKQLRLSNAAKMMHTS 224
++ I+LF+ V F + L KI + + + LS +
Sbjct: 61 IAIGIALFIFVIVRPPIE---FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQV 117
Query: 225 GDIVNYVTVDAYRIGEFPFWFH----QIWSTSLQLCIAVVV-VYYSVGLATIATLIVMIL 279
G +++ V D + +F IW + + IA+ + + V L T+A L +
Sbjct: 118 GQVISRVINDVEQTKDF---ILTGLMNIWLDCITIIIALSIMFFLDVKL-TLAALFIFPF 173
Query: 280 TVLGNSPLAKLQHKYQETFMTAQNK--RLKA-ITEVLVNMKVLKLYAWDSY----FKNVI 332
+L + + ++ ++ + E + + V+K +A + F
Sbjct: 174 YIL---TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN 230
Query: 333 EKLRSEEYGWLKVLQLQKGYYMVLFWSSPILIGAATLLTCYFLGI------PLNPSNVFT 386
+ LK + + +++ + + +G + +
Sbjct: 231 TNFLT---RALKHTR-----WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAA 282
Query: 387 FLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFL-EAPELQNS----DMQQVCSRAEL 441
F+ L +L P+R L F ++ S+DR+ + E +++N ++ R ++
Sbjct: 283 FVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDI 342
Query: 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR-- 499
+H F + + P L++INL ++ E A G G GKSTL+ L +PR
Sbjct: 343 DHVSF------QYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLIN--L--IPRFY 391
Query: 500 --------LQGMDLKMLPFGDL-TQIG 517
+ G ++K G L QIG
Sbjct: 392 DVTSGQILIDGHNIKDFLTGSLRNQIG 418
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-12
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP G T++GERGV LSGGQKQR+ +AR + I +LD+ SALD ++ +
Sbjct: 463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES-----IIQ 517
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL +T L+V H++ + D I++I G I++ T+ L+
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 5e-71
Identities = 116/570 (20%), Positives = 232/570 (40%), Gaps = 50/570 (8%)
Query: 674 LKPYIDYLSHKKGFLYFTLSTFAYLIF-----LVAQILQSLWIATYIPSTSISRLKLVIV 728
+ P+ ++ A ++ + +L+ L + T S L + +
Sbjct: 20 IAPFK---------AGLIVAGIALILNAASDTFMLSLLKPL-LDDGFGKTDRSVLLWMPL 69
Query: 729 YSGIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILS 784
+ IG+M L S++ Y S + + LF P+AF+D G +LS
Sbjct: 70 ---VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 785 RVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLIIVLQN 841
R++ D + S V ++I F+++ +WQ +L+V+ P++ + I
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIR--- 183
Query: 842 YYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFH 901
+ + + + + + + G + F +E + + +
Sbjct: 184 VVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243
Query: 902 SFTAREWLIQRLETLSAIVLAT-SALCTTLLHKGHKGAG----YTGMALSFGLSLNDFLV 956
+A ++ ++++ LA + AG ++ L
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLT- 302
Query: 957 YSVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPN 1016
+VN Q G + + + L + E + TG +E ++ Y
Sbjct: 303 -NVNAQFQRG--MAACQTLFAILDSEQE-----KDEGKRVIDRATGDLEFRNVTFTYPGR 354
Query: 1017 APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD 1076
LR I G + +VGR+GSGK+T+ S + R + G I++DG D+ L
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 414
Query: 1077 LRSNLGIIPQDPTLFSGSVRYN--LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
LR+ + ++ Q+ LF+ +V N +++ ++I E + I +
Sbjct: 415 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE------AARMAYAMDFINKMDN 468
Query: 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA 1194
GLD+++ ++G S GQRQ I + R +LR IL+LDEAT+++D ++ +Q +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1195 NCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
N T + +AHR++T+ + ++ + DG +VE
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 64/441 (14%), Positives = 156/441 (35%), Gaps = 53/441 (12%)
Query: 107 NQKRPSAHPSILRAL--ISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFK 164
N K S + R I+ ++ +G ++ S + LK + G+
Sbjct: 3 NDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS 62
Query: 165 YEIYSLAISLFLVKCVESLAGRHWFFQSRLT---GLKIRSSLCAAISSKQLRLSNAAKMM 221
+ + + + + + + + S K+ ++ + + + A
Sbjct: 63 V-LLWMPLVVIGLMILRGITS---YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 222 HTSGDIVNYVTVDAYRIGE-FPFWFHQIWSTSLQLCIAVVV-VYYSVGLATIATLIVMIL 279
++G +++ +T D+ ++ + + ++ YYS L +I +++ +
Sbjct: 119 QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL-SIILVVLAPI 177
Query: 280 TVLGNSPLAKLQHKYQETFMTAQNKR---LKAITEVLVNMKVLKLYAWDSY----FKNVI 332
+ + + +++ QN + ++L K + ++ F V
Sbjct: 178 VSI---AIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 333 EKLRSEEYGWLKVLQLQKGYYMVLFWSSPI---LIGAATLLTCYFLGIP-----LNPSNV 384
K+R + +K++ S PI + A Y P L +
Sbjct: 235 NKMRLQ---GMKMVSASS-------ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTI 284
Query: 385 FTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHS 444
+++ L P++ L +V F + + L++ + ++ + +
Sbjct: 285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVI---DRATGD 341
Query: 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GEL 497
+ ++ ++ P LRNINL++ + A+ G G+GKST+ + I G +
Sbjct: 342 LEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 498 PRLQGMDLKMLPFGDL-TQIG 517
+ G DL+ L Q+
Sbjct: 401 -LMDGHDLREYTLASLRNQVA 420
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-13
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
+ G T IGE GV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + +
Sbjct: 466 MDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER-----AIQ 520
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL + +T L++ H++ + D I+++ G I++ T+ LL
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 8e-70
Identities = 110/578 (19%), Positives = 239/578 (41%), Gaps = 66/578 (11%)
Query: 674 LKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIG 733
++ Y +ST A +I A + + + + +
Sbjct: 20 IRLYK---------AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI--LP 68
Query: 734 IGMMFLLLTR---SFLVVYLGLEASESIFYKLMSSLF----RAPMAFYDSTPVGRILSRV 786
++ L+ R F Y S ++ ++ LF P+ F+D G +LSR+
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRI 128
Query: 787 SSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQ---VLLVIVPMIYLIIVLQNYY 843
+ D + S V ++I ++ +WQ VL+V+ P++ I ++
Sbjct: 129 TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI---SFV 185
Query: 844 FATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSF 903
+++ R T + S + + G + ++ +E + + ++
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 904 TAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVY------ 957
+A+ ++ ++++ L A ++ L+ F V
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFL----------ASV--DSIRAELTPGTFTVVFSAMFG 293
Query: 958 ---------SVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYD 1008
SV ++ G + + + L M + +E + N G+V++ D
Sbjct: 294 LMRPLKALTSVTSEFQRG--MAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKD 346
Query: 1009 LQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD 1068
+ Y+ L ++ + G + +VGR+GSGK+T+ + R + G I +DG D
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 1069 ITTIGLYDLRSNLGIIPQDPTLFSGSVRYN--LDPLSQFTDQEIWEVTIPSQVLEKCQLR 1126
+ L +LR + ++ Q+ LF+ ++ N ++T ++I + +
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ------AARQAHAM 460
Query: 1127 EVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQ 1186
E I+ +GLD+++ ++G + S GQRQ + + R +LR +L+LDEAT+++D ++ +Q
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 1187 NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
+ N TV+ +AHR++T+ + +L + +G+++E
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE 558
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 56/444 (12%), Positives = 143/444 (32%), Gaps = 59/444 (13%)
Query: 107 NQKRPSAHPSILRAL--ISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFK 164
S + R I + ++ S +I + + LK + G
Sbjct: 3 LHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN 62
Query: 165 YEIYSLAISLFLVKCVESLAGRHWFFQSRLT---GLKIRSSLCAAISSKQLRLSNAAKMM 221
+ + L + + V L+G F S + + + + + +
Sbjct: 63 F-LRILPFMILGLMFVRGLSG---FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 222 HTSGDIVNYVTVDAYRIGE-FPFWFHQIWSTSLQLCIAVVV-VYYSVGLATIATLIVMIL 279
++G +++ +T D+ ++ I + + + + S L ++ ++V +
Sbjct: 119 ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL-SLVLIVVAPV 177
Query: 280 TVLGNSPLAKLQHKYQETFMTAQNKR---LKAITEVLVNMKVLKLYAWDSY----FKNVI 332
++ + ++++ Q + ++L KV+ Y F V
Sbjct: 178 VAF---AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVS 234
Query: 333 EKLRSEEYGWLKVLQLQKGYYMVLFWSSPI---LIGAATLLTCYFLGIP-----LNPSNV 384
+R + +K++ Q + P+ + A + + L P
Sbjct: 235 NSMRQQ---TMKLVSAQS-------IADPVIQMIASLALFAVLFLASVDSIRAELTPGTF 284
Query: 385 FTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHS 444
+ + L P++ L V F + + ++ +++ + +
Sbjct: 285 TVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEA---ERVNGE 341
Query: 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR----- 499
+ +K +++ P L +++ + + A+ G G+GKST+ L R
Sbjct: 342 VDVKDVTFTYQGKE-KPALSHVSFSIPQGKTVALVGRSGSGKSTIAN--L--FTRFYDVD 396
Query: 500 -----LQGMDLKMLPFGDL-TQIG 517
L G D++ +L
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFA 420
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-13
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
+P G T IGE G +LSGGQ+QR+ +ARAL +D + +LD+ SALD ++ + +
Sbjct: 466 MPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESER-----AIQ 520
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL + KTVL++ H++ + D IL++ GEII+ + LL
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 9e-65
Identities = 140/590 (23%), Positives = 253/590 (42%), Gaps = 84/590 (14%)
Query: 674 LKPYIDYLSHKKGFLY--FTLSTFAYLIFLVAQILQSLWIATYIPSTSISRL-KLVIVYS 730
L+ + YL L F T + ++ +++ L I L + +++
Sbjct: 25 LRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILG 84
Query: 731 GIGIGMMFLLLTRSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDL 790
I L + +++ L + + +L L R P+ F+D TP G I+SRV +D
Sbjct: 85 TIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVIND- 143
Query: 791 SIIDLDLSIKSTIAVGTTMAVISTFVVLGALT------WQ---VLLVIVPMIYLIIVL-- 839
+D +I + + + GA+ V L IVP+ LI +
Sbjct: 144 --VD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 840 ---QNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAF----QNEERFFAKNLDLI 892
+ Y++ + L ++NG + E ++G I+ F + E+F N L
Sbjct: 199 SQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 893 DAYASSFFHSFTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLN 952
+ S L + ++ + A + G +AL +++
Sbjct: 251 KVGTKAQIFSGV----LPPLMNMVNNLGFALISGF---------GGW---LALKDIITVG 294
Query: 953 D---FLVYS------VNNQCIVGNLIVS----VERLNQYMRIPSEAPELVQKNSPAPDWP 999
F+ YS +N N+I ER+ + + + E
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL----DLEEEKDDPDAVELRE 350
Query: 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
G++E ++ Y P+ L+ IT + G K+ +VG TGSGKTT+++ L R +
Sbjct: 351 VRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN-----LDPLSQFTDQEIWEVT 1114
G+I++DG+DI I LRS++GI+ QD LFS +V+ N TD+EI E
Sbjct: 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA----TDEEIKEAA 465
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+ I+ EG ++++ +G + S GQRQL+ + R L +IL+LDEAT
Sbjct: 466 ------KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519
Query: 1175 ASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
+++D T+ +Q + + T I +AHR+ T+ + ++++ + DG++VE
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 9e-17
Identities = 81/405 (20%), Positives = 146/405 (36%), Gaps = 68/405 (16%)
Query: 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLV 177
L + H +++ F + I P + I F + + L +
Sbjct: 28 LLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL-LPRYMLILGTI 86
Query: 178 KCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMM---------HTSGDIV 228
+ SL + Q ++ + +LR K+ GDI+
Sbjct: 87 YALTSLLF---WLQGKIM------LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137
Query: 229 NYVTVDAYRIGE-FPFWFHQIWSTSLQLCIAVVV-VYYSVGLATIATLIVMILTVLGNSP 286
+ V D I Q +S + L AV++ +V L ++ TL ++ LTVL
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVIL-SLVTLSIVPLTVLITQI 196
Query: 287 LAKLQHKYQETFMTAQNK--RLKA-ITEVLVNMKVLKLYAWDSY----FKNVIEKLRSEE 339
++ KY F Q +L I E + + V+KL+ + F V E LR +
Sbjct: 197 VSSQTRKY---FYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLR--K 251
Query: 340 YGWLKVLQLQKGYYMVLFWSS---PI--LIGAATLLTCYFLGIPLNPSNVFT------FL 388
G +S P+ ++ G L ++ T F+
Sbjct: 252 VGTKAQ-----------IFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFI 300
Query: 389 ATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNS----DMQQVCSRAELEHS 444
R P+ L + F A S +RI L+ E ++ ++++V E ++
Sbjct: 301 GYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNV 360
Query: 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTL 489
F S++ P L++I +KP +K A+ G G+GK+T+
Sbjct: 361 WF------SYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTI 397
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 506 KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEY 565
K LP G T + + G +LS GQ+Q + + RA + I +LD+ S +D KT K + +
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI--QA 532
Query: 566 VMGALSK-KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
M L + KT +++ H+++ + D I+++ GEI++ +D L+
Sbjct: 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-60
Identities = 121/574 (21%), Positives = 245/574 (42%), Gaps = 78/574 (13%)
Query: 690 FTLSTFAYLIFLVAQILQSLWIATYI-----PSTSISRLKLVIVYSGIGIGMMFLLLTRS 744
+ + +F+V +++ L T + + LV+ + + + +
Sbjct: 21 YWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGG 80
Query: 745 FLVVYLGLEASESIFYKLMSSLFRAPMAF----YDSTPVGRILSRVSSDLSIIDLDLSIK 800
AS++ L LFR ++F + +++R+++D++ + + +
Sbjct: 81 IGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMML 140
Query: 801 STIAVGTTM----AVISTFVVLGALTWQVLLVIVP----MIYLIIVLQNYYFATAKELM- 851
I V + ++ + L+ VL+ ++P + + N F +E
Sbjct: 141 LRIVVRAPLLFVGGIVMAVSINVKLSS-VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTD 199
Query: 852 RINGTRSSLLASHLAETVAGAMTIRAFQNE----ERFFAKNLDLIDAYASSFFHSFTARE 907
+N + E + G +RAF+ E E F N L + S
Sbjct: 200 EVNRV--------VRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS---------- 241
Query: 908 WLIQRLETLS--AIVLATSALCTTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIV 965
L + + + +L G G + G S+ + Y + I+
Sbjct: 242 --AFSLIVFALPLFIFIVNMGMIAVLWFG--GVLVRNNQMEIG-SIMAYTNYLMQ---IM 293
Query: 966 GNLI-------------VSVERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIR 1012
+L+ S +R+ + + +E P + + ++ G V +++ R
Sbjct: 294 FSLMMIGNILNFIVRASASAKRVLEVL---NEKPAIEEADNALALPNVEGSVSFENVEFR 350
Query: 1013 YRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTI 1072
Y N VL G+ + + G + V+G TGSGK+TL++ + RL++P G++ +D LD+ T+
Sbjct: 351 YFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410
Query: 1073 GLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVI 1129
L DLR ++ +PQ+ LFSG+++ NL TD EI E + Q+ + I
Sbjct: 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVE------AAKIAQIHDFI 462
Query: 1130 QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTI 1189
EG DS V + G N+S GQ+Q + + R ++++ ++L+LD+ T+S+D T+ + + +
Sbjct: 463 ISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL 522
Query: 1190 RREFANCTVITVAHRIATVMDCNMVLSMSDGKLV 1223
+R CT + +I T + + +L + +GK+
Sbjct: 523 KRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 7e-18
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFL---FTEYVMGAL 570
+++ G N SGGQKQR+ +ARAL + + +LDD S++D T K + Y G
Sbjct: 471 SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC- 529
Query: 571 SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVN 620
T ++T ++ D IL++ G++ T+ LL + ++++
Sbjct: 530 ---TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYE 576
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 54/287 (18%), Positives = 115/287 (40%), Gaps = 50/287 (17%)
Query: 259 VVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQETFMTAQNK--RLKAIT-EVLVN 315
V+ V +V L+++ + ++ VL L K + F Q + + E L+
Sbjct: 156 VMAVSINVKLSSV-LIFLIPPIVLLFVWLTKKGNPL---FRKIQESTDEVNRVVRENLLG 211
Query: 316 MKVLKLYAWDSY----FKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWSSPI---LIGAAT 368
++V++ + + Y F+ E LR + +V P+ ++
Sbjct: 212 VRVVRAFRREEYENENFRKANESLRR--------SIISAFSLIVFA--LPLFIFIVNMGM 261
Query: 369 LLTCYFLGI-----PLNPSNVFTFLA-TLRILQEPIRLLPDVFGAFIEAKVSLDRIANFL 422
+ +F G+ + ++ + ++I+ + ++ ++ + A S R+ L
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFS-LMMIGNILNFIVRASASAKRVLEVL 320
Query: 423 EA-PELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGE 481
P ++ +D + +E S+ ++ + + + +P L +N VKP A+ GE
Sbjct: 321 NEKPAIEEADNAL--ALPNVEGSVSFENVEFRYFENT-DPVLSGVNFSVKPGSLVAVLGE 377
Query: 482 VGAGKSTLLAAILGELPRL----------QGMDLKMLPFGDL-TQIG 517
G+GKSTL+ I PRL +D++ + DL I
Sbjct: 378 TGSGKSTLMNLI----PRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-59
Identities = 74/246 (30%), Positives = 139/246 (56%), Gaps = 11/246 (4%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+ +++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQ 1118
++IDG D+ LR +G++ QD L + S+ N+ +P + +++
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAA---- 119
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
+ + I E +EG +++V + GA S GQRQ I + R ++ +IL+ DEAT+++D
Sbjct: 120 --KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Query: 1179 NATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238
++ ++ + + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL
Sbjct: 178 YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
Query: 1239 FAQLVK 1244
++ L +
Sbjct: 238 YSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 9e-18
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
L G T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ +M
Sbjct: 131 LREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH-----VIM 185
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+ K +TV+++ H++ + D I+++ G+I++ + LL
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGDL 513
L NINL +K E I G G+GKSTL I G++ + G DL + L
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPNWL 81
Query: 514 -TQIG 517
Q+G
Sbjct: 82 RRQVG 86
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 3e-55
Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 16/253 (6%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ + Y ++ +LR I+ + I G +G GK+T+ S L R +PT G+I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD--PLSQFTDQEIWEVTIPSQVLE 1121
IDG I I L + RS +G + QD + +G++R NL +TD+++W+ VL+
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ------VLD 114
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT 1181
R ++ + L++ V + G S GQRQ + + R LR +IL+LDEATAS+D+ +
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1182 DSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPKKLLRRQDSL 1238
+S++Q + T + +AHR++T++D + + + G++ ++E L L
Sbjct: 175 ESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE----LVATHPL 230
Query: 1239 FAQLVKEYWSHAE 1251
+A+ V E + +
Sbjct: 231 YAKYVSEQLTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
+P T++GERGV +SGGQ+QR+ +ARA ++ I +LD+ ++LD+++ V
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES-----MVQ 179
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
AL +T L++ H++ + D I I G+I + ++ L+
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGDL 513
LR+I+ E +P A G G GKST+ + + GE+ + G + + +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENW 74
Query: 514 -TQIG 517
+QIG
Sbjct: 75 RSQIG 79
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 6e-55
Identities = 74/278 (26%), Positives = 144/278 (51%), Gaps = 18/278 (6%)
Query: 969 IVSVERLNQYMRIPSEAPELVQKNSPAPDWPPT-GKVEIYDLQIRYRPNAPLVLRGITCT 1027
+ +E + ++ +E V+ A G++E ++ Y L+ ++ T
Sbjct: 22 FIDMENMFDLLKEETE----VKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TLQDVSFT 76
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
G + +VG +G+GK+T++ LFR + + G I IDG DI+ + LRS++G++PQD
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 1088 PTLFSGSVRYNL---DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144
LF+ ++ N+ + + E+ + + + I EG + V + G
Sbjct: 137 TVLFNDTIADNIRYGRVTA--GNDEVEAAA------QAAGIHDAIMAFPEGYRTQVGERG 188
Query: 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHR 1204
S G++Q + + R +L+ I++LDEAT+++D + + +Q ++ + AN T I VAHR
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248
Query: 1205 IATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
++TV++ + +L + DG +VE + LL R ++A +
Sbjct: 249 LSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G TQ+GERG+ LSGG+KQR+ +AR + + I LLD+ SALD + +
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER-----AIQ 230
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
+L+K +T ++V H++ + D IL+I G I++ ++ LL
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 391 LRILQEPIRLLPDVFGAFIEAKVSLDRIANFL-EAPELQNS----DMQQVCSRAELEHSI 445
+ + + ++ + + L E E+++ ++ R E E+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 446 FIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
F S+ TL++++ V P + A+ G GAGKST+L
Sbjct: 61 F------SYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTIL 97
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 6e-50
Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 16/248 (6%)
Query: 1002 GKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
+E D+ Y + N L+ I G +VG TGSGK+T+ L+R + G
Sbjct: 16 VNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL---DPLSQFTDQEIWEVTIP 1116
I I G ++ +RS +GI+PQD LF+ +++YN+ + TD+E+ + T
Sbjct: 75 -DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA--TDEEVIKAT-- 129
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ QL + I+ + D++V G S G+RQ I + R +L+ +I++ DEAT+S
Sbjct: 130 ----KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+D+ T+ + Q + N T+I +AHR++T+ ++ ++ GK+VE K LL+ +
Sbjct: 186 LDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-N 244
Query: 1237 SLFAQLVK 1244
+A++
Sbjct: 245 GEYAEMWN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
LP T +G +G+ LSGG++QRI +AR L +D I + D+ S+LD+KT
Sbjct: 141 LPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY-----LFQ 195
Query: 568 GALSK----KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLL 609
A+ +T++++ H++ + + +SI+L++ G+I++ T+ LL
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 453 SWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
S+ + TL++IN + A+ G G+GKST+
Sbjct: 26 SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 4e-47
Identities = 69/255 (27%), Positives = 124/255 (48%), Gaps = 20/255 (7%)
Query: 999 PPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVE 1056
G V+ D+ Y PN VL+G+T T G +VG GSGK+T+ + L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1057 PTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLD--PLSQFTDQEIWEVT 1114
PTGGK+++DG + + L + + + Q+P LF S R N+ T +EI V
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
+ + I +G D+ V + G S GQRQ + L R ++R+ ++L+LD AT
Sbjct: 131 ------MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNAT 184
Query: 1175 ASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVE---YDEPK 1229
+++D +Q + E+A+ TV+ + +++ + +L + +G + E + +
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ-- 242
Query: 1230 KLLRRQDSLFAQLVK 1244
L + + +V+
Sbjct: 243 --LMERGGCYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 9e-19
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 508 LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567
P G T++GE G LSGGQ+Q + LARAL + + +LD+ SALDA V
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR-----VQ 196
Query: 568 GALSK------KTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
L + +TVLL+T Q+ IL + G + + T+ L+ ++ +V A
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEA 256
Query: 622 HKETMGPETFGEH 634
H
Sbjct: 257 LAAPSDAAAHHHH 269
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL-------GELPRLQGMDLKMLPFGDL 513
L+ + + P + A+ G G+GKST+ A + G++ L G L L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHYL 91
Query: 514 -TQIG 517
TQ+
Sbjct: 92 HTQVA 96
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-27
Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 41/261 (15%)
Query: 1003 KVEIYDLQIRYRPNAPL---VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTG 1059
++E+ ++ + PL L ++ G + V G TGSGK+TL+ + L+EPT
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1060 GKIIIDGLDITTIGLYDLRSNLGIIPQDPT--LFSGSVR-------YNLDPLSQFTDQEI 1110
G ++ DG Y++R N+GI Q P F+ V N P D++
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-----DRDP 113
Query: 1111 WEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGA--NWSMGQRQLIGLGRVVLRRRQIL 1168
V + + V GLD +D S G+++ + + V++ IL
Sbjct: 114 VP-----LVKKA--MEFV------GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160
Query: 1169 VLDEATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+LDE +D +L+ + TVI ++H I TV++ + V+ + GK V
Sbjct: 161 ILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVF 218
Query: 1225 YDEPKKLLRRQDSLFAQLVKE 1245
+ L + D F
Sbjct: 219 DGTRMEFLEKYDPRFFTSKML 239
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVT 579
LSGG+K+R+ +A + + DI +LD+P LD + L ++ KTV+L++
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR--IVEKWKTLGKTVILIS 195
Query: 580 HQVDFLPAF-DSILLISGGEII 600
H ++ + D ++++ G+ +
Sbjct: 196 HDIETVINHVDRVVVLEKGKKV 217
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
L N++L + E + G G+GKSTLL
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLL 50
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 34/250 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ +L Y L+GI + G ++G G GK+TL +++P+ G+I+
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1064 IDGLDITT--IGLYDLRSNLGIIPQDPT--LFSGSVR-------YNLDPLSQFTDQEIWE 1112
D I G+ LR ++GI+ QDP LFS SV N+ + + EI +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM----KLPEDEIRK 122
Query: 1113 VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
+V L+ G++ L + S GQ++ + + V++ ++L+LDE
Sbjct: 123 -----RVDNA--LKRT------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 1173 ATASID-NATDSILQ--NTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEP 1228
TA +D I++ +++E T+I H I V C+ V M +G+++ P
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 1229 KKLLRRQDSL 1238
K++ ++ +
Sbjct: 229 KEVFAEKEVI 238
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 5e-09
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTV 575
LS GQK+R+ +A L + + +LD+P + LD +M L + T+
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS-----EIMKLLVEMQKELGITI 197
Query: 576 LLVTHQVDFLPAF-DSILLISGGEII 600
++ TH +D +P + D++ ++ G +I
Sbjct: 198 IIATHDIDIVPLYCDNVFVMKEGRVI 223
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLL 490
L+ IN+ +K E AI G G GKSTL
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLF 51
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 4e-21
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
K+EI DL + Y L IT T E G+ + G G GKTTL+ + ++P G+I
Sbjct: 10 KLEIRDLSVGYDKPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
I +G+ IT + + + +P++ + SV L ++ ++ + I LE
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI-MDALE 120
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID-NA 1180
++ ++ +KK G S G + + L +L +I VLD+ +ID ++
Sbjct: 121 SVEVLDL--KKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 1181 TDSILQNTIRREFAN--CTVITVAHRIATVMDCNMVLSMSDGKLV 1223
+L +I +I+ ++ C++ ++
Sbjct: 169 KHKVL-KSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 51/187 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLK-------MLP 509
L I + ++ G G GK+TLL I L G+ + LP
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 510 -----FGDLT-------------------QIGE------------RGVNLSGGQKQRIQL 533
++ +I + + LS G +R+QL
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQL 144
Query: 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILL 593
A L + +IY+LDDP A+D + + + K V++ + + L D
Sbjct: 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE--LSYCDVNEN 202
Query: 594 ISGGEII 600
+
Sbjct: 203 LHKYSTK 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 4e-21
Identities = 45/198 (22%), Positives = 69/198 (34%), Gaps = 59/198 (29%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLKMLP----- 509
+L NINLEV EK I G G+GK+TLL AI G LP + GM+++ +
Sbjct: 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRY 76
Query: 510 -------------------FG---------------DLTQIGERGVN-----LSGGQKQR 530
++GE + LS GQ
Sbjct: 77 STNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVL 136
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH-QVDFLPA 587
++ + AL +I LD+PF +DA + + + K +LVTH
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRY-----IKEYGKEGILVTHELDMLNLY 191
Query: 588 FDSILLI-SGGEIIQAAT 604
+ G + +
Sbjct: 192 KEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 44/245 (17%)
Query: 1004 VEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+++ ++ I + L I G K+ ++G GSGKTTL+ A+ L+ P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG--SVRYN--LDPLSQFTDQEIWEVTIPS 1117
I I+G+++ +R+ + P + +V L + D++++
Sbjct: 60 IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL----- 109
Query: 1118 QVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
++L+ +L E I +K L L S GQ L+ + + +I+ LDE ++
Sbjct: 110 EMLKALKLGEEILRRK--LYKL--------SAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 1178 DNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD--------GKLVEYDEPK 1229
D A ++ I+ I V H + +M+ + +L
Sbjct: 160 DAARRHVISRYIKEY--GKEGILVTH------ELDMLNLYKEYKAYFLVGNRLQGPISVS 211
Query: 1230 KLLRR 1234
+LL
Sbjct: 212 ELLES 216
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 8e-21
Identities = 46/245 (18%), Positives = 102/245 (41%), Gaps = 23/245 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+++ + + +L+ I+ G K + G G+GKTTL++ L T G +
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1064 IDGLDITTIG--LYDLRSNLGIIPQDPTLFSGSVRYNLDP----LSQFTDQEIWEVTIPS 1117
+ G +G +R ++G + + +S I
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 1118 QVLEKCQ--LREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATA 1175
++ + L+ V G+ + Q S G++Q + + R ++ + Q+L+LDE A
Sbjct: 137 EIRNEAHQLLKLV------GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 1176 SID-NATDSILQ--NTIRREFANCTVITVAHRIATV-MDCNMVLSMSDGKLVEYDEPKKL 1231
+D A +S+L +++ + +I V H I + + + +L + DG+ ++ + +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 1232 LRRQD 1236
L ++
Sbjct: 251 LTSEN 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK----TVLL 577
LS G+KQR+ +ARAL + +LD+P + LD + L + ++ +LS ++
Sbjct: 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS--ILDSLSDSYPTLAMIY 218
Query: 578 VTHQVDFLPA-FDSILLISGGEIIQAATYDHLL 609
VTH ++ + A F ILL+ G+ IQ + +L
Sbjct: 219 VTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
L+ I+ ++ +K+ + G GAGK+TLL + P G
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 56/217 (25%)
Query: 442 EHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQ 501
++ +++ ++A+ N + +N ++ + A+ G+ G GKSTLL +LG +Q
Sbjct: 2 NKALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 502 G-----------------------MDLKML-------PFG-----------------DLT 514
G +D+ ++ F +LT
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT 119
Query: 515 QIGERGVN-LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK- 572
+ +R LSGGQ+Q I +ARA+ + + LLD+P SALD + + ++ L++
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LLIDLAQS 177
Query: 573 --KTVLLVTHQVDFLPAF-DSILLISGGEIIQAATYD 606
TV+ THQ + + A + LL++ T +
Sbjct: 178 QNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRN 214
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 40/231 (17%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ + +L Y+ + + + G + V+G+ G GK+TL+ L + P GKI
Sbjct: 5 LSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTL-FSGSV-------RY-NLDPLSQFTDQEIWEVT 1114
++ ++G +PQ + F+ SV R +++ ++ +
Sbjct: 63 ------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
Q L+ L + K SL S GQRQLI + R + ++++LDE T
Sbjct: 111 ---QALDYLNLTHL---AKREFTSL--------SGGQRQLILIARAIASECKLILLDEPT 156
Query: 1175 ASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222
+++D A I+ + + + N TV+ H+ V+ N L ++
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-20
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 35/259 (13%)
Query: 983 SEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRT 1040
+S D +++ ++ + + L ++ G GV+G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 1041 GSGKTTLISALFRLVEPTGGKIIIDGLDITTI---GLYDLRSNLGIIPQDPTLFSG-SVR 1096
G+GK+TLI + L PT G +++DG ++TT+ L R +G+I Q L S +V
Sbjct: 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF 123
Query: 1097 YNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLV-VQDGANW-----SM 1149
N+ PL E+ ++ ++ + L SLV + D + S
Sbjct: 124 GNVALPL------ELDNTP-----------KDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 1150 GQRQLIGLGRVVLRRRQILVLDEATASID-NATDSILQ--NTIRREFANCTVITVAHRIA 1206
GQ+Q + + R + ++L+ D+AT+++D T SIL+ I R T++ + H +
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMD 225
Query: 1207 TVMD-CNMVLSMSDGKLVE 1224
V C+ V +S+G+L+E
Sbjct: 226 VVKRICDCVAVISNGELIE 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 61/255 (23%), Positives = 95/255 (37%), Gaps = 74/255 (29%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAI-LGELP-----RLQGMDLKMLPFGDLTQ- 515
L N++L V + + + G GAGKSTL+ + L E P + G +L L +LT+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 516 ---IG------------------------------ERG---------VNLSG-------- 525
IG E V L
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 526 ---GQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTVL 576
GQKQR+ +ARAL + + L D SALD T T ++ L T+L
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPAT-----TRSILELLKDINRRLGLTIL 218
Query: 577 LVTHQVDFLPA-FDSILLISGGEII-QAATYDHLLVTSQEF-QDLVNAHKETMGPETFGE 633
L+TH++D + D + +IS GE+I Q + Q + + PE + E
Sbjct: 219 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
Query: 634 HVSSKEDENEVKKVE 648
+ ++ + V +
Sbjct: 279 RLQAEPFTDCVPMLR 293
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-19
Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 34/251 (13%)
Query: 979 MRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVG 1038
+R +EA + + D + + VL F + ++G
Sbjct: 327 LRFRTEALQ-FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMG 385
Query: 1039 RTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT--LFSGSVR 1096
G+GKTTLI L ++P G+ I + + LF +R
Sbjct: 386 ENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIR 439
Query: 1097 YNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156
QF + + V++ ++ ++I ++ + L S G+ Q +
Sbjct: 440 ------GQFLNPQFQT-----DVVKPLRIDDIIDQE---VQHL--------SGGELQRVA 477
Query: 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNM 1213
+ + I ++DE +A +D+ I IRR T V H +
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537
Query: 1214 VLSMSDGKLVE 1224
V+
Sbjct: 538 VIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 52/253 (20%), Positives = 88/253 (34%), Gaps = 59/253 (23%)
Query: 395 QEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSW 454
+E I + D I A+ R D+Q + + K+
Sbjct: 311 REGINIFLD---GHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG--- 364
Query: 455 EADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG-----MDLKMLP 509
+ L E +E + GE G GK+TL+ + G L +G +++ M P
Sbjct: 365 -----DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP 419
Query: 510 --------------FGD--------------------LTQIGERGV-NLSGGQKQRIQLA 534
F + I ++ V +LSGG+ QR+ +
Sbjct: 420 QKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV 479
Query: 535 RALYQDRDIYLLDDPFSALD----AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-D 589
AL DIYL+D+P + LD +K + +++ KKT +V H D
Sbjct: 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVI-RRFILHN--KKTAFIVEHDFIMATYLAD 536
Query: 590 SILLISGGEIIQA 602
+++ G A
Sbjct: 537 KVIVFEGIPSKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 37/249 (14%)
Query: 1000 PTGKVEIYDLQI--------RYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISAL 1051
P ++I +L RY N+ + R T G +G+VG G GK+T + L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSANSFKLHR--LPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1052 FRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIW 1111
+P G+ I + + + ++ + P Q+ D
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSE---LQNYFTKMLEDDIKAIIKP--QYVDN--- 175
Query: 1112 EVTIPSQVLEKC-----QLREVIQEKKE---------GLDSLVVQDGANWSMGQRQLIGL 1157
IP + L+ +++ E L++++ +D S G+ Q +
Sbjct: 176 ---IPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232
Query: 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRR-EFANCTVITVAHRIATVMD-CNMVL 1215
G ++ + + DE ++ +D IR VI V H ++ + + V
Sbjct: 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC 292
Query: 1216 SMSDGKLVE 1224
+ V
Sbjct: 293 IIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 512 DLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL 570
L + +R + LSGG+ QR + + Q+ D+Y+ D+P S LD K ++ +L
Sbjct: 210 QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ--IIRSL 267
Query: 571 SK--KTVLLVTHQVDFLPAF-DSILLISGGEIIQ 601
K V+ V H + L D + +I G +
Sbjct: 268 LAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 10/101 (9%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGER 519
N + +P + + G G GKST L + G+ G E
Sbjct: 90 NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP---------NLGRFDDPPEW 140
Query: 520 GVNLSGGQKQRIQ-LARALYQDRDIYLLDDPFSALDAKTAK 559
+ + +Q + +D ++ + + K
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 2e-18
Identities = 116/706 (16%), Positives = 210/706 (29%), Gaps = 177/706 (25%)
Query: 291 QHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLR----SEEYGWLKVL 346
H + + + K I V + + K+V + + EE ++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEID--HII 55
Query: 347 Q----LQKGYYMVLFWSSPILIGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLP 402
+ LFW L+ + F+ L + + FL + I E + P
Sbjct: 56 MSKDAVSGTLR--LFW---TLLSKQEEMVQKFVEEVLRIN--YKFLMS-PIKTEQRQ--P 105
Query: 403 -DVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNP 461
+ +IE + DR+ N + Q V SR +
Sbjct: 106 SMMTRMYIEQR---DRLYN-----DNQVFAKYNV-SRLQPYL------------------ 138
Query: 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKM--LPFGDLTQIGER 519
LR LE++PA+ I G +G+GK+ + + MD K+ L +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 520 GVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTA-KFLFTEYVMGALSKKTVLLV 578
L QK Q+ D + + + + L + LLV
Sbjct: 199 LEML---QKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKS-----KPYENCLLV 249
Query: 579 THQV---DFLPAFD---SILLISGG----EIIQAATYDHLLVTSQEFQDLVNAHKETMGP 628
V AF+ ILL + + + AAT H+ S + + E
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVK-- 304
Query: 629 ETFGEHVSSKEDE--NEVKKV----------EDEGHNNTSPADQLIKKEERETGDTGLKP 676
+++ + + EV T D K + T ++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNW-KHVNCDKLTTIIES 361
Query: 677 YIDYLS---HKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTSISRLKLVIVYSGIG 733
++ L ++K ++ LS F + +L +W I S + + + YS
Sbjct: 362 SLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYS--- 415
Query: 734 IGMMFLL------LTRSFLVVYLGLEASESIFYKLMSSL---FRAPMAFYDSTPVGRILS 784
L+ T S +YL L+ Y L S+ + P F
Sbjct: 416 -----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---------- 460
Query: 785 RVSSDLSIIDLDLSIKSTIA---VGTTMA-VISTFVVLGALTWQVLLVIVPMIYLIIVLQ 840
S DL LD S I ++ F M++L
Sbjct: 461 --SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---------------RMVFL----- 498
Query: 841 NYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFF 900
++ F K +R + T + S L T++ + + + N + ++
Sbjct: 499 DFRFLEQK--IRHDSTAWNASGSILN-------TLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 901 HSFTAREWLIQRLETLSAIVLATSALCTTLLHKG--HKGAGYTGMA 944
F L + ++ + T LL + A
Sbjct: 550 D-F---------LPKIEENLICSK--YTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 6e-13
Identities = 87/499 (17%), Positives = 155/499 (31%), Gaps = 161/499 (32%)
Query: 834 YLIIVLQNY----YFATAKELMRINGTRSSLLASHLA-ETVAGAMTIRAFQNE-ERFFAK 887
L L + +E++RIN L S + E +M R + + +R +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 888 NLDLIDAYASSFFHSFTA-REWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGMAL- 945
N + Y S + R+ L L +++ G G+G T +AL
Sbjct: 123 N-QVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLI----------D-GVLGSGKTWVALD 169
Query: 946 ---SFGL-SLNDFLVY--SVNNQCIVGNLIVSVERLNQYMRIPSEAPELVQKNSPAPDWP 999
S+ + DF ++ ++ N ++ +++L +I P + D
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQI---DPNWTSR----SDHS 220
Query: 1000 PTGKVEIYDLQIRYR--------PNAPLVLR-----GITCTFEGGHKIGVVGRTGSGKTT 1046
K+ I+ +Q R N LVL F KI + TT
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--------TT 272
Query: 1047 LISALFRLVEPTGGKIIIDGLDITTIGLYD------LRSNLGIIPQD---------P--- 1088
+ + I LD ++ L L L PQD P
Sbjct: 273 RFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 1089 TLFSGSVR-----------YNLDPLSQ-----------------FTDQEIWE--VTIPSQ 1118
++ + S+R N D L+ F ++ IP+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1119 VLEKCQLREVI-QEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+L +I + + +VV +S+ ++Q E+T SI
Sbjct: 391 LL------SLIWFDVIKSDVMVVVNKLHKYSLVEKQ----------------PKESTISI 428
Query: 1178 DNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE-YDEPKKLLRRQD 1236
+ + ++ + N HR +V+ Y+ PK D
Sbjct: 429 PS-----IYLELKVKLEN---EYALHR----------------SIVDHYNIPKTF--DSD 462
Query: 1237 SLFAQLVKEYW-SHAEKHL 1254
L + +Y+ SH HL
Sbjct: 463 DLIPPYLDQYFYSHIGHHL 481
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 4e-09
Identities = 68/393 (17%), Positives = 122/393 (31%), Gaps = 100/393 (25%)
Query: 885 FAKNLDLIDAYASSFFHS-FTAREWLIQRLETLSAIVLATSALCTTLLHKGHKGAGYTGM 943
F N D D S + E I + V T L TLL K +
Sbjct: 29 FVDNFDCKDV--QDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---K 81
Query: 944 ALSFGLSLN-DFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEAPELV--QKNSPAPDWPP 1000
+ L +N FL+ + + R PS + Q++ D
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQ----------------RQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTL-ISAL--FRLVEP 1057
K + R L LR + + G GSGKT + + +++
Sbjct: 126 FAKYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 1058 TGGKII-IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDP-LSQFTDQEIWEVTI 1115
KI + + + S ++ L Y +DP + +D I
Sbjct: 180 MDFKIFWL------NLKNCN--SPETVLEMLQKLL-----YQIDPNWTSRSDHSS---NI 223
Query: 1116 PSQVLE-KCQLREVIQEK--KEGLDSLV---VQDGANWSMGQRQLIGLG-RVVLRRRQIL 1168
++ + +LR +++ K + L LV VQ+ W L +++L R
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAW-----NAFNLSCKILLTTRFKQ 276
Query: 1169 VLDEATA------SIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKL 1222
V D +A S+D+ + ++ + ++ L L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------------------LDCRPQDL 318
Query: 1223 VEYDEPKKLLRRQDSLFAQLVK------EYWSH 1249
E R+ S+ A+ ++ + W H
Sbjct: 319 PR--EVLTTNPRRLSIIAESIRDGLATWDNWKH 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 8e-09
Identities = 97/692 (14%), Positives = 179/692 (25%), Gaps = 213/692 (30%)
Query: 125 HWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKY-----EIYSLAISLFLVK- 178
+K IL A + K+ +S E + I L L K
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQ 75
Query: 179 -------CVESLAGRHWFFQSRL-TGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNY 230
E L + F S + T + S + ++ RL N D +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---------DNQVF 126
Query: 231 VTVDAYRIGEFPFWFHQIWSTSLQLCIAV-VVVYYSVGLATIATLIVMILTVLGNSPLAK 289
+ R+ + ++ L+L A V++ G+ G + +A
Sbjct: 127 AKYNVSRLQPY----LKLRQALLELRPAKNVLID---GVLGS-----------GKTWVAL 168
Query: 290 ---LQHKYQETF------MT-AQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIE-----K 334
L +K Q + + + E+L + LY D + + + K
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIK 224
Query: 335 LRSEE-YGWLKVLQLQKGY---YMVL--FWSSPIL----IGAATLLTCYFLGIPLNPSNV 384
LR L+ L K Y +VL ++ + LLT V
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-------RFKQV 277
Query: 385 FTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPELQNSDMQQVCSRAELEHS 444
FL+ L + + +L+
Sbjct: 278 TDFLSAATTTHIS---LDHHSMTLTPDE-VKSLLLKYLD--------------------- 312
Query: 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-RLQGM 503
+ DL E NP + ++A + +
Sbjct: 313 --CRPQDLPREVLTTNP--------------RRLS---------IIAESIRDGLATWDN- 346
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD---PFSALDA--KTA 558
K + LT I E +N R ++ + P L
Sbjct: 347 -WKHVNCDKLTTIIESSLN-----VLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDV 399
Query: 559 KFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618
V+ L K + L+ + +I + L + ++
Sbjct: 400 IKSDVMVVVNKLHKYS-LVEKQPKES-----TISI-----------PSIYLELKVKLENE 442
Query: 619 VNAHK--------------ETMGPET--------FGEHVSSKEDENEV------------ 644
H+ + + P G H+ + E +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 645 --KKVEDEGHNNTSPADQLIKKEERETGDT--GLKPYIDYLSHKKGFLYFTLSTFAYLIF 700
+K+ + + L +T LK Y Y+ + A L F
Sbjct: 503 LEQKIRHDSTAWNASGSIL---------NTLQQLKFYKPYICDNDP--KYERLVNAILDF 551
Query: 701 LVAQILQSLWIATYIPSTSISRLKLVIVYSGI 732
L +I ++L + T + R+ L+ I
Sbjct: 552 LP-KIEENLICS---KYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 7e-08
Identities = 97/684 (14%), Positives = 194/684 (28%), Gaps = 179/684 (26%)
Query: 538 YQDRDI-YLLDDPFSA-LDAKTAKFLFTEYVMGALSKKTV---LLVTH---QVDFLPAFD 589
YQ +DI + +D F D K + + LSK+ + ++ L F
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRL--FW 69
Query: 590 SILLISGGEIIQAATYDHLLVTSQEFQDLVNA-HKETMGPETFGEHVSSKEDE--NEVKK 646
LL E++Q + L ++ L++ E P + D N+ +
Sbjct: 70 -TLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 647 VEDEGHNNTSPADQLIKKEERETGDTGLKPYIDYLSHKKGFLYFTLSTFAYLIFLVAQIL 706
+ P +L + L+P + L G L + + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLE------LRPAKNVLID--GVLGSGKTW------VALDVC 171
Query: 707 QSLWIATYIPSTSISRLKLVIVYSGIG--------IGMMFLLLTRSFLVVYLGLEASESI 758
S + + I + + + M+ LL + + S +I
Sbjct: 172 LSYKVQCKMDFK--------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 759 FYKLMSSLFRAPMAFYDSTPVGR---ILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTF 815
++ S+ S P +L V + + ++ I + TT T
Sbjct: 224 KLRI-HSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWN-AFNLSCKILL-TTRFKQVTD 279
Query: 816 VVLGALTWQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAG---- 871
+ A T + L M T E+ SLL +L
Sbjct: 280 FLSAATTTHISLDHHSMTL-----------TPDEVK-------SLLLKYLDCRPQDLPRE 321
Query: 872 AMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAR--EWLIQRLETLSAIVLATSALCTT 929
+T + L +I A W + L+ I+ ++ +
Sbjct: 322 VLTTNPRR---------LSIIAE----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 930 LLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQY-MRIPSEAPEL 988
++ + +++ S + + L+ + +
Sbjct: 369 AEYRKM----FDRLSV---------FPPSAH---------IPTILLSLIWFDVIKSDVMV 406
Query: 989 V----QKNSPAPDWPPTGKVEIYDLQIRYRPNAP--------LVLR-GITCTFEG----- 1030
V K S P + I + + + +V I TF+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 1031 -----------GHKIGVVGRTGSGKTTLISAL---FRLVEPTGGKIIIDGLDITTIG--- 1073
GH + + + TL + FR +E KI D G
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLDFRFLE---QKIRHDSTAWNASGSIL 521
Query: 1074 --LYDLRSNLG-IIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQ 1130
L L+ I DP R ++ + F + + L + ++++
Sbjct: 522 NTLQQLKFYKPYICDNDPKY----ERL-VNAILDFLPK-------IEENLICSKYTDLLR 569
Query: 1131 EKKEGLDSLVVQDGANWSMGQRQL 1154
+L+ +D A + +Q+
Sbjct: 570 I------ALMAEDEAIFEEAHKQV 587
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 50/257 (19%), Positives = 110/257 (42%), Gaps = 35/257 (13%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
V + DL+ R +L+GI+ E G G++G G+GKTT + + L++P+ G +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD---PLSQFTDQEIWEVTIPSQV 1119
+ G ++ +++R + +P++ + L + EI E+ +
Sbjct: 74 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--ERA 130
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
E L E I+++ S G + + + R ++ ++ +LDE T+ +D
Sbjct: 131 TEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
Query: 1180 ATDSILQNTIRREFA-NCTVITVAHRIATVMD-----CNMVLSMSDGKLVEYDEPKKLLR 1233
++ +++ T++ +H M C+ + + +G +VE ++L
Sbjct: 180 LNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
Query: 1234 R--QDSL---FAQLVKE 1245
R ++ F ++VK
Sbjct: 236 RYKAQNIEEVFEEVVKC 252
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 9e-10
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 65/207 (31%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------------------------ 498
L+ I+ E++ E F + G GAGK+T L I +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 499 -----------------------RLQGMDLK--------MLPFGDLTQIGERGV-NLSGG 526
L + + V S G
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 150
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH---Q 581
+++ +ARAL + + +LD+P S LD A+ + + + S+ T+L+ +H +
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILK-QASQEGLTILVSSHNMLE 208
Query: 582 VDFLPAFDSILLISGGEIIQAATYDHL 608
V+FL D I LI G I++ T + L
Sbjct: 209 VEFLC--DRIALIHNGTIVETGTVEEL 233
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 41/267 (15%)
Query: 972 VERLNQYMRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGG 1031
+ N +R L + + K++ + + L + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEG 294
Query: 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLF 1091
IG++G G GKTT L + G + + ++ Y + I +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS----YKPQ----RIFPNYD-- 344
Query: 1092 SGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQ 1151
G+V+ Q+ + + S EV K+ L L+ + + S G+
Sbjct: 345 -GTVQ-------QYLENASKDALSTSSWF----FEEVT--KRLNLHRLLESNVNDLSGGE 390
Query: 1152 RQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRIATVM 1209
Q + + + + + VLD+ ++ +D I+ I+R + H
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH------ 444
Query: 1210 DCNMVLSMSD------GKLVEYDEPKK 1230
D ++ ++D G+ +
Sbjct: 445 DLSIHDYIADRIIVFKGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-17
Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 50/190 (26%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP---- 509
+ L N E K E I G G GK+T ++GE+ + L P
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340
Query: 510 ---FGDLTQIGERGV-----------------------------NLSGGQKQRIQLARAL 537
G + Q E +LSGG+ Q++ +A L
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL 400
Query: 538 YQDRDIYLLDDPFSALD----AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSIL 592
++ D+Y+LD P S LD AK + K ++ H + D I+
Sbjct: 401 AKEADLYVLDQPSSYLDVEERYIVAKAI-KRVTRER--KAVTFIIDHDLSIHDYIADRII 457
Query: 593 LISGGEIIQA 602
+ G
Sbjct: 458 VFKGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 22/228 (9%)
Query: 1012 RYRPNAPLVLRGITC-TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDIT 1070
RY+ N + T + +GV+G+ G GKTT++ L + P G +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGK 62
Query: 1071 TIGLYDLRSN-LGIIPQDPTLFSGSVRYNLDPLSQF----TDQEIWEVTIPSQVLEKCQL 1125
L R + ++ +S L + + + + T+ +++L K
Sbjct: 63 DEVLKRFRGKEIYNYFKEL--YSN----ELKIVHKIQYVEYASKFLKGTV-NEILTKIDE 115
Query: 1126 REVIQEKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
R E KE + +L +D S G Q + + +LR + + D+ ++ +D
Sbjct: 116 RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERM 175
Query: 1184 ILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230
+ IR N VI V H + + +++ + G+ Y K
Sbjct: 176 NMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSK 222
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-13
Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 69/215 (32%)
Query: 463 LRNINLEV-KPAEKFAICGEVGAGKSTLLAAILG-----------------ELPRLQGMD 504
+ L K + G+ G GK+T+L + G L R +G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 505 LKM------------------------LPFG----------------------DLTQIGE 518
+ G ++T +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN 133
Query: 519 RGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKFLFTEYVMGALSKKTVL 576
+ LSGG QR+ +A +L ++ D+Y+ D P S LD + + + L K V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA--KAIRELLKNKYVI 191
Query: 577 LVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLV 610
+V H + L D I +I G +
Sbjct: 192 VVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-17
Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 45/266 (16%)
Query: 973 ERLNQYMR--IPSE---APELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCT 1027
+N+++R + E K + + + + + L
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
+ G IG+VG G GKTT + L + EPT GKI D + +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL---------------TVAYKP 353
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
+ D + T E+ S++ E++ K G+ L ++
Sbjct: 354 QYIK-------ADY--EGTVYELLSKIDASKLNSNFYKTELL--KPLGIIDLYDREVNEL 402
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRI 1205
S G+ Q + + +LR I +LDE +A +D + IR E T + V H
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-- 460
Query: 1206 ATVMDCNMVLSMSD------GKLVEY 1225
D M+ +SD G+ +Y
Sbjct: 461 ----DVLMIDYVSDRLMVFEGEPGKY 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---MDLKML---PFG-- 511
+ L E+K E I G G GK+T + + G +G DL + +
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 512 -------------------------------DLTQIGERGV-NLSGGQKQRIQLARALYQ 539
+ + +R V LSGG+ QR+ +A L +
Sbjct: 359 DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418
Query: 540 DRDIYLLDDPFSALD----AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILLI 594
D DIYLLD+P + LD ++ + +KT L+V H V + D +++
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKN--EKTALVVEHDVLMIDYVSDRLMVF 475
Query: 595 SGGEIIQA 602
G
Sbjct: 476 EGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 37/234 (15%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEP------TGGK 1061
D RY NA VL + + G +G+VG G+GK+T + L + P
Sbjct: 26 DCVHRYGVNA-FVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1062 IIIDGLDITTIGLYDLR---SNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
+I + Y + + + + + +L P + + I +
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YV-----DLIPKAVK-GKVI-------E 128
Query: 1119 VLEKCQLREVIQEKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+L+K ++E + L++++ ++ + S G+ Q + + +LR DE ++
Sbjct: 129 LLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 1177 IDNATDSILQNTIR--REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228
+D IR E +V+ V H +A + +SD V Y EP
Sbjct: 189 LDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDY------LSDIIHVVYGEP 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 73/205 (35%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-------------------------- 498
VK I G G GKST + + G+L
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 499 -RLQGMDLKMLP------------FG----------------------DLTQIGERGV-N 522
+L+ +++ + G +L + ER + +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH 158
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKT-AKFLFTEYVMGALSK--KTVLLVT 579
LSGG+ QR+ +A AL ++ Y D+P S LD + + LS+ K+VL+V
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA---RAIRRLSEEGKSVLVVE 215
Query: 580 HQ---VDFLPAFDSILLISGGEIIQ 601
H +D+L D I ++ G +
Sbjct: 216 HDLAVLDYL--SDIIHVVYGEPGVY 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 50/186 (26%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---MDLKML----------- 508
L E++ E I G G GK+T + + G +G DL +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 509 --------------------------PFGDLTQIGERGV-NLSGGQKQRIQLARALYQDR 541
P G + + +R V +LSGG+ QR+ +A L +D
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTELLKPLG-IIDLYDRNVEDLSGGELQRVAIAATLLRDA 490
Query: 542 DIYLLDDPFSALD----AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAF-DSILLISG 596
DIYLLD+P + LD ++ + + +KT L+V H V + D +++ G
Sbjct: 491 DIYLLDEPSAYLDVEQRLAVSRAI-RHLMEKN--EKTALVVEHDVLMIDYVSDRLIVFEG 547
Query: 597 GEIIQA 602
Sbjct: 548 EPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-16
Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 36/251 (14%)
Query: 979 MRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVG 1038
+R + + + + + + + L G IG+VG
Sbjct: 334 VRFRPYEI----RFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVG 389
Query: 1039 RTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN 1098
G GKTT + L + EPT GK+ D + + +
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDL---------------TVAYKPQYI-------K 427
Query: 1099 LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158
+ + T E+ S++ E++ K G+ L ++ + S G+ Q + +
Sbjct: 428 AEY--EGTVYELLSKIDSSKLNSNFYKTELL--KPLGIIDLYDRNVEDLSGGELQRVAIA 483
Query: 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMD--CNMV 1214
+LR I +LDE +A +D + IR E T + V H + ++D + +
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRL 542
Query: 1215 LSMSDGKLVEY 1225
+ +G+ +
Sbjct: 543 IVF-EGEPGRH 552
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 66/180 (36%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------------RLQGMDLKML---- 508
VK I G G GK+T + + G+L ++ L
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYF 168
Query: 509 --------------PFGDLT-------------------------------QIGERGV-N 522
+ DL + +R +
Sbjct: 169 ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ 228
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK--KTVLLVTH 580
LSGG+ QR+ +A AL + Y D+P S LD + + V+ L+ K VL+V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKV--ARVIRRLANEGKAVLVVEH 286
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-13
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 37/234 (15%)
Query: 1008 DLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK------ 1061
D RY NA VL + + G +G+VG G+GKTT + L + P +
Sbjct: 96 DCVHRYGVNA-FVLYRL-PIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1062 IIIDGLDITTIGLYDLRS---NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQ 1118
+I + Y R + + + +L P + +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQ-------YVDLLPKAVKGKVR--------E 198
Query: 1119 VLEKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+L+K +E K+ L++++ ++ S G+ Q + + +LR+ DE ++
Sbjct: 199 LLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSY 258
Query: 1177 IDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228
+D + I R A V+ V H +A + +SD V Y EP
Sbjct: 259 LDIRQRLKVARVI-RRLANEGKAVLVVEHDLAVLDY------LSDVIHVVYGEP 305
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 1e-15
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 41/163 (25%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGE----LPRLQGMDLKML----PFGD 512
L L +K A ++ ICG G GKSTL+ AI P + +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTH 508
Query: 513 -----LTQIGERGVN-------------------------LSGGQKQRIQLARALYQDRD 542
L + E GV LSGG K ++ LARA+ ++ D
Sbjct: 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568
Query: 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFL 585
I LLD+P + LD +L Y+ T + ++H FL
Sbjct: 569 ILLLDEPTNHLDTVNVAWL-VNYLNT--CGITSITISHDSVFL 608
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 43/213 (20%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
+L + + G+ G G GK+TL+ A+ G +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRT---------- 497
Query: 1080 NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE-KCQLREVIQEKKEGL-- 1136
+ D T + ++ V E +E I++K
Sbjct: 498 --VYVEHDI---------------DGTHSDT---SVLDFVFESGVGTKEAIKDKLIEFGF 537
Query: 1137 -DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFAN 1195
D ++ + S G + + L R VLR IL+LDE T +D + L N +
Sbjct: 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CG 595
Query: 1196 CTVITVAHR---IATVMDCNMVLSMSDGKLVEY 1225
T IT++H + V C +++ KL +Y
Sbjct: 596 ITSITISHDSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 9e-08
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVT 579
LSGGQK ++ LA +Q + +LD+P + LD + L AL + V+++T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIIT 955
Query: 580 HQVDFLPAF-DSILLISGGEIIQ 601
H +F + + + G +
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTP 978
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
V++ +++ +Y + + I +I V+G G+GK+TLI+ L + PT G++
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 1064 I 1064
Sbjct: 732 T 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502
P + +IN + + + A+ G GAGKSTL+ + GEL G
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 69/202 (34%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLK----------- 506
L ++ EV+ E + G GAGKSTLLA + G + G L+
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 507 -------MLPFG---------------------------DLTQIGERGVN-LSGGQKQRI 531
PF L R N LSGG+ QR+
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 532 QLARALYQD-------RDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTVLLVT 579
+LA + Q + LLD+P ++LD + LS +++ +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ-----SALDKILSALSQQGLAIVMSS 190
Query: 580 HQVDFLPAF-DSILLISGGEII 600
H ++ L+ GG+++
Sbjct: 191 HDLNHTLRHAHRAWLLKGGKML 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 40/231 (17%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ G + +VG G+GK+TL++ + + G I G + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1080 NLGIIPQDPTL-FSGSVR----YNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKE 1134
+ + Q T F+ V + T E + + V
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTE-----LLNDVAGAL----------- 114
Query: 1135 GLDSLVVQDGANWSMGQRQLIGLGRVVL-------RRRQILVLDEATASID----NATDS 1183
LD + + S G+ Q + L VVL Q+L+LDE S+D +A D
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174
Query: 1184 ILQNTIRREFANCTVITVAHRIA-TVMDCNMVLSMSDGKLVEYDEPKKLLR 1233
IL ++ ++ +H + T+ + + GK++ +++L
Sbjct: 175 ILSALSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 9e-15
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 65/208 (31%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP------- 509
+R ++ +++ E + G G+GK+T+L I G E P + G + LP
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 510 -------------------FG----------------------DLTQIGERGVN-LSGGQ 527
FG L R + LSGGQ
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQ 150
Query: 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH-QVD 583
+QR+ LARAL + L D+PF+A+D + + L T + + + T + VTH Q +
Sbjct: 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF--VRQVHDEMGVTSVFVTHDQEE 208
Query: 584 FLPAFDSILLISGGEIIQAAT----YDH 607
L D +L++ G + Q T Y+
Sbjct: 209 ALEVADRVLVLHEGNVEQFGTPEEVYEK 236
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+E ++ Y P +RG++ G +G++G +GSGKTT++ + L PT G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVLE 1121
I G +T + R N+G++ Q+ LF +V N+ L + + + + + ++V E
Sbjct: 74 IGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDNVSFGLRE---KRVPKDEMDARVRE 128
Query: 1122 KCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
LR + L+S + S GQ+Q + L R + R Q+L+ DE
Sbjct: 129 --LLRFM------RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 59/200 (29%), Positives = 82/200 (41%), Gaps = 62/200 (31%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP------- 509
L N++L+V+ E F I G GAGK+ L I G +P L G D+ L
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 510 -------------------FG-------------------DLTQIGERGVN-LSGGQKQR 530
FG + + +R LSGG++QR
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQR 135
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTHQVDFLPA 587
+ LARAL + I LLD+P SALD +T + + L KK TVL +TH D A
Sbjct: 136 VALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKKNKLTVLHITH--DQTEA 191
Query: 588 F---DSILLISGGEIIQAAT 604
D I ++ G++IQ
Sbjct: 192 RIMADRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 48/253 (18%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+EI L ++ L ++ E G ++G TG+GKT + + P G+I+
Sbjct: 2 IEIESLSRKW---KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQV-- 1119
+DG D+T + ++ + Q+ +LF +V+ NL+ + + ++ P +V
Sbjct: 59 LDGKDVTDLSPEK-H-DIAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLD 110
Query: 1120 -LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
++ ++ L S G++Q + L R ++ +IL+LDE +++D
Sbjct: 111 TARDLKIEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 1179 NATDSILQNTIRR--EFANCTVITVAH----------RIATVMDCNMVLSMSDGKLVEYD 1226
T + + + TV+ + H RIA V+ DGKL++
Sbjct: 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA-VVM--------DGKLIQVG 210
Query: 1227 EPKKLLRRQDSLF 1239
+P+++ +
Sbjct: 211 KPEEIFEKPVEGR 223
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 60/197 (30%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKMLP--------- 509
N++ E+ + + G GAGKS L I G P RL G D+ LP
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 510 -----------------FG--------------------DLTQIGERGVN-LSGGQKQRI 531
+G + + +R LSGG++QR+
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH-QVDFLPA 587
LARAL + LLD+P SA+D KT L E + + ++ +L VTH ++
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVPILHVTHDLIEAAML 193
Query: 588 FDSILLISGGEIIQAAT 604
D + ++ G I++
Sbjct: 194 ADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 1038 GRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVR 1096
G TG+GK+ + + +V+P G++ ++G DIT + R +G +PQD LF SV
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVY 88
Query: 1097 YNLD-PLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155
N+ L E ++ EK + ++ K L S G+RQ +
Sbjct: 89 RNIAYGLRNVERVERDRRV--REMAEKLGIAHLLDRKPARL-----------SGGERQRV 135
Query: 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAH---------- 1203
L R ++ + ++L+LDE +++D T +L +R + ++ V H
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 1204 RIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
+A M +G++VE + K+L ++ A+ +
Sbjct: 196 EVAV---------MLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 75/215 (34%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDL----KMLP--- 509
L +I+L + P E I G G GK+TLL + G E P L G + LP
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 510 -----------------------FG----------------------DLTQIGERGVN-L 523
+G ++++ R + L
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139
Query: 524 SGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTH 580
SGGQ+QR LARAL D ++ LLD+PFSALD + + + + M A + + + V+H
Sbjct: 140 SGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED--MIAALRANGKSAVFVSH 197
Query: 581 -QVDFLPAF---DSILLISGGEIIQAAT----YDH 607
+ + A D I ++ G I+Q A+ Y
Sbjct: 198 DREE---ALQYADRIAVMKQGRILQTASPHELYRQ 229
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 46/260 (17%)
Query: 1001 TGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060
T + I L ++ VL I+ + + G + ++G +G GKTTL+ L +P G
Sbjct: 2 TAALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 1061 KIIIDGLDITTIGLY---DLRSNLGIIPQDPTLF-----SGSVRYNLDPLSQFTDQEIWE 1112
+I + G I + R LG + Q+ LF ++ Y L + + +
Sbjct: 60 EISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTAQERQ 117
Query: 1113 VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDE 1172
+LE + E+ L S GQ+Q L R + ++++LDE
Sbjct: 118 RI--EAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDE 164
Query: 1173 ATASIDNATDSILQNTIRR--EFANCTVITVAH----------RIATVMDCNMVLSMSDG 1220
+++D ++ + + + V+H RIA V M G
Sbjct: 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIA-V--------MKQG 215
Query: 1221 KLVEYDEPKKLLRRQDSLFA 1240
++++ P +L R+ L A
Sbjct: 216 RILQTASPHELYRQPADLDA 235
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 979 MRIPSEAPELVQKNSPAPDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVG 1038
M P ++++ L+ + VL+GI G + V+G
Sbjct: 1 MGSSHHHHHHSSGLVPRGS-HMLQMIDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIG 57
Query: 1039 RTGSGKTTLISALFRLVEPTGGKIIIDGLDIT--TIGLYDLRSNLGIIPQDPTLF 1091
+GSGK+T + L L + G+IIIDG+++ L +R +G++ Q LF
Sbjct: 58 PSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--TVLLVTH 580
LSGGQ QR+ +ARAL + I L D+P SALD + + + VM L+ + T+++VTH
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS--VMKQLANEGMTMVVVTH 217
Query: 581 QVDFL-PAFDSILLISGGEIIQAAT 604
++ F D +L + GG II+
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLL 490
L+ IN+ ++ E + G G+GKST L
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFL 67
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-10
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSG Q+QR+ LARAL +D + LLD+PFS LDA+ + + + T+L+V+
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL--VKEVQSRLGVTLLVVS 198
Query: 580 H-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
H D D + ++ G+++Q YD+
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 69/270 (25%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
++ + ++ ++ + L + E G + G++G +G+GKTT + + L P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQD-------------PTLFSGSVRYNLD-PL--SQFT 1106
D + + G + P+D P L + N+ PL + +
Sbjct: 63 YFDDRLVASNGKLIVP------PEDRKIGMVFQTWALYPNL---TAFENIAFPLTNMKMS 113
Query: 1107 DQEIWE-VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRR 1165
+EI + V +V + + V+ L S Q+Q + L R +++
Sbjct: 114 KEEIRKRVE---EVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDP 159
Query: 1166 QILVLDEATASIDNATDSILQNTIRREFA------NCTVI----------TVAHRIATVM 1209
+L+LDE +++ D+ ++++ R T++ +A R+
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV-- 213
Query: 1210 DCNMVLSMSDGKLVEYDEPKKLLRRQDSLF 1239
+ GKLV+ +P+ L S+
Sbjct: 214 -------LVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYD 1076
+L+GI+ + + G + ++G +GSGK+TL+ L L PT GK+ ++G ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1077 LRS-NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEG 1135
LR+ LG + Q + L + + T E V +P + +E + +
Sbjct: 79 LRNRKLGFVFQ---------FHYL--IPELTALE--NVIVPM-LKMGKPKKEAKERGEYL 124
Query: 1136 LDSLVVQDGAN-----WSMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQ--N 1187
L L + D + S G++Q + + R + +L DE T ++D+A ++
Sbjct: 125 LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1188 TIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVE 1224
I +++ V H + L M DGK+V
Sbjct: 185 KINEG--GTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK-----KTVLL 577
LSGG++QR+ +ARAL + + D+P LD+ T+ VM K ++++
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSAN-----TKRVMDIFLKINEGGTSIVM 195
Query: 578 VTHQVDFLPAFDSILLISGGEIIQ 601
VTH+ + L + G+++
Sbjct: 196 VTHERELAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSK------KTVL 576
LSGGQ+QR+ +ARAL + I L D P ALD+KT E +M L K KTV+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKT-----GEKIMQLLKKLNEEDGKTVV 200
Query: 577 LVTHQVDFLPAFDSILLISGGEII 600
+VTH ++ + I+ + GE+
Sbjct: 201 VVTHDINVARFGERIIYLKDGEVE 224
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 9e-08
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 30/226 (13%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYD 1076
L+ + + G + ++G +GSGK+T+++ + L +PT G++ ID + + L
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 1077 LRSN-LGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPS--QVLEKCQLREVIQEKK 1133
+R + +G + Q ++NL + T E V +P + E +
Sbjct: 80 IRRDKIGFVFQ---------QFNL--IPLLTALE--NVELPLIFKYRGAMSGEERRKRAL 126
Query: 1134 EGLDSLVVQDGANW------SMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQ 1186
E L +++ S GQ+Q + + R + I++ D+ T ++D+ T + I+Q
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 1187 --NTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKK 1230
+ E TV+ V H I ++ + DG++ +E +
Sbjct: 187 LLKKLNEEDGK-TVVVVTHDINVARFGERIIYLKDGEVER-EEKLR 230
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 26/227 (11%)
Query: 1019 LVLRGITCTFEG-------------GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065
L I F G ++G GSGK+TLI+ + ++ G++ +
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67
Query: 1066 GLDITTIGLYDLRSNLGIIP--QDPTLFSG-SVRYN-LDPLSQFTDQEIWEVTIPSQVLE 1121
DIT +L + GI+ Q P +V N L + + + + +
Sbjct: 68 NKDITNKEPAEL-YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK 126
Query: 1122 KCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
+ ++ E + + L L + S GQ +L+ +GR ++ +++V+DE A +
Sbjct: 127 EEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV-A 185
Query: 1180 ATDSI-LQNTIR--REFANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222
+ + N + + T + + HR+ V++ + + M +G++
Sbjct: 186 PGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ L + Y A ++GI G + ++G G+GKTT +SA+ LV GKII
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1065 DGLDITTIGLYDL-RSNLGIIPQDPTLFSG-SVRYNL 1099
+G DIT + + R + ++P+ +F +V NL
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 58/145 (40%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
++ I+L+V + + G GAGK+T L+AI G + G D+ P
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 510 -----------FGDLT-----QIG-------------------------ER----GVNLS 524
F +LT +G ER G LS
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 525 GGQKQRIQLARALYQDRDIYLLDDP 549
GG++Q + + RAL + ++D+P
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 523 LSGGQKQRIQLA------RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVL 576
LSGG++ + LA L + + +LD+P LD + + L T V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 577 LVTHQVDFLPAFDSILLI------SGGEII 600
LV+H + A D ++ I S E++
Sbjct: 309 LVSHDEELKDAADHVIRISLENGSSKVEVV 338
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
K+ + DL RY + VL+G++ G I ++G +GSGK+T + + L +P+ G I
Sbjct: 6 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1063 IIDGLDITTIG-------------LYDLRSNLGIIPQDPTLFS 1092
I++G +I + L LR+ L ++ Q L+S
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 8/66 (12%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTE--YVMGALSKK--TVLLV 578
LSGGQ+QR+ +ARAL + D+ L D+P SALD + L E +M L+++ T+++V
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE----LVGEVLRIMQQLAEEGKTMVVV 209
Query: 579 THQVDF 584
TH++ F
Sbjct: 210 THEMGF 215
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 18/97 (18%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA----LSKK---TV 575
LSGGQ+QR+ +ARAL ++ ++ LLD+P S LDA L E + A L K+ T
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL----LRLE--VRAELKRLQKELGITT 187
Query: 576 LLVTH-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
+ VTH Q + L D I +I GEI+Q T Y
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQ+QR+ +ARA+ + D+ L+D+P S LDAK + E + L +K T + VT
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIYVT 199
Query: 580 H-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
H QV+ + D I +++ G+++Q + Y
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM----GALSKK---TV 575
LSGGQ+QR+ LARAL + + L D+P S LDA L M L ++ T
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN----LRMI--MRAEIKHLQQELGITS 187
Query: 576 LLVTH-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
+ VTH Q + + I + + G+++Q T YD
Sbjct: 188 VYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM----GALSKK---T 574
LSGGQ+QR+ L RA+ + ++L+D+P S LDAK L M L ++ T
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK----LRVR--MRAELKKLQRQLGVT 192
Query: 575 VLLVTH-QVDFLPAFDSILLISGGEIIQAAT----YDH 607
+ VTH QV+ + D I +++ G + Q + YD
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 523 LSGGQKQRIQLA------RALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK--T 574
LSGG++ + LA L + + +LD+P LD + + L T +M KK
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMERYLKKIPQ 115
Query: 575 VLLVTHQVDFLPAFDSILLI------SGGEII 600
V+LV+H + A D ++ I S E++
Sbjct: 116 VILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAK 556
LSGGQ+QR+ + R L + ++LLD+P S LDA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
L+ +NL V E A+ G GAGKSTL + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495
LR ++L+V P E AI G G+GKSTL A + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 8e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 23/49 (46%)
Query: 756 ESIFYKLMSSL-FRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTI 803
+++ KL +SL A DS P L+IK+T+
Sbjct: 20 QAL-KKLQASLKLYAD----DSAPA-----------------LAIKATM 46
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1255 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-67 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-63 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-60 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-56 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-24 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-56 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-54 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-38 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-33 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-13 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-07 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-31 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-14 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-05 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-30 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-12 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-09 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-06 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-07 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-24 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-12 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-09 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-13 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-15 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-11 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-14 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 9e-12 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 224 bits (572), Expect = 5e-67
Identities = 74/257 (28%), Positives = 133/257 (51%), Gaps = 10/257 (3%)
Query: 991 KNSPA--PDWPPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLI 1048
KN P G+++I + +Y N +L+ I + E G + VG +G GK+TLI
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 1049 SALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL-DPLSQFTD 1107
+ + R + T G+I+IDG +I LR+ +G++ QD LFS +V+ N+ TD
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 1108 QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQI 1167
+E+ E + + I +G D+ V + G S GQ+Q + + R+ L I
Sbjct: 122 EEVVEA------AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 1168 LVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDE 1227
L+LDEAT+++D ++SI+Q + + T + VAHR++T+ + ++ + +G +VE
Sbjct: 176 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGT 235
Query: 1228 PKKLLRRQDSLFAQLVK 1244
++L+ + + L
Sbjct: 236 HRELIAK-QGAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 114 bits (288), Expect = 7e-29
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
+ LP G T++GERGV LSGGQKQR+ +AR + I +LD+ SALD ++ +
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ- 194
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
E + +T L+V H++ + D I++I G I++ T+ L+ ++ L +
Sbjct: 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 212 bits (540), Expect = 9e-63
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 9/248 (3%)
Query: 999 PPTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPT 1058
TG +E ++ Y LR I G + +VGR+GSGK+T+ S + R +
Sbjct: 9 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 68
Query: 1059 GGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYN--LDPLSQFTDQEIWEVTIP 1116
G I++DG D+ L LR+ + ++ Q+ LF+ +V N +++ ++I E
Sbjct: 69 EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA--- 125
Query: 1117 SQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATAS 1176
+ I + GLD+++ ++G S GQRQ I + R +LR IL+LDEAT++
Sbjct: 126 ---ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 1177 IDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+D ++ +Q + N T + +AHR++T+ + ++ + DG +VE +LL Q
Sbjct: 183 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL-AQH 241
Query: 1237 SLFAQLVK 1244
++AQL K
Sbjct: 242 GVYAQLHK 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 117 bits (295), Expect = 6e-30
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
+ + G T IGE GV LSGGQ+QRI +ARAL +D I +LD+ SALD ++ + +
Sbjct: 134 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ- 192
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
+ +T L++ H++ + D I+++ G I++ T+ LL + L
Sbjct: 193 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 204 bits (521), Expect = 2e-60
Identities = 73/242 (30%), Positives = 137/242 (56%), Gaps = 7/242 (2%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ +++ RY+P++P++L I + + G IG+VGR+GSGK+TL + R P G+++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL-DPLSQFTDQEIWEVTIPSQVLEK 1122
IDG D+ LR +G++ QD L + S+ N+ + +++ +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA------KL 115
Query: 1123 CQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATD 1182
+ I E +EG +++V + GA S GQRQ I + R ++ +IL+ DEAT+++D ++
Sbjct: 116 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 1183 SILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQL 1242
++ + + TVI +AHR++TV + + ++ M GK+VE + K+LL +SL++ L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Query: 1243 VK 1244
+
Sbjct: 236 YQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 9e-23
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
+ L G T +GE+G LSGGQ+QRI +ARAL + I + D+ SALD ++ +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM- 179
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQ-EFQDLVNAH 622
+ +TV+++ H++ + D I+++ G+I++ + LL + + L
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 623 KE 624
+
Sbjct: 240 SD 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 193 bits (491), Expect = 3e-56
Identities = 64/253 (25%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 998 WPPTGKVEIYDLQIRY--RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLV 1055
G V+ D+ Y RP+ VL+G+T T G +VG GSGK+T+ + L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1056 EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL--DPLSQFTDQEIWEV 1113
+PTGG++++DG + L + + Q+P +F S++ N+ + T +EI
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA- 123
Query: 1114 TIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
K I +G D+ V + G+ S GQRQ + L R ++R+ +L+LD+A
Sbjct: 124 -----AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDA 178
Query: 1174 TASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKL 1231
T+++D + ++ + E + +V+ + ++ V + +L + G + E ++L
Sbjct: 179 TSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
Query: 1232 LRRQDSLFAQLVK 1244
+ + + +V+
Sbjct: 239 MEK-KGCYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (256), Expect = 1e-24
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
+ LP G T++ E G LSGGQ+Q + LARAL + + +LDD SALDA + +
Sbjct: 133 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 192
Query: 564 E-YVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
Y ++VLL+T + + D IL + GG I + T+ L+ + +V A
Sbjct: 193 LLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 251
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 192 bits (488), Expect = 8e-56
Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 6/242 (2%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ + Y ++ +LR I+ + I G +G GK+T+ S L R +PT G+I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
IDG I I L + RS +G + QD + +G++R NL + + + QVL+
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT----YGLEGDYTDEDLWQVLDLA 116
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
R ++ + L++ V + G S GQRQ + + R LR +IL+LDEATAS+D+ ++S
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 1184 ILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
++Q + T + +AHR++T++D + + + G++ + +L+ L+A+ V
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV 235
Query: 1244 KE 1245
E
Sbjct: 236 SE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 103 bits (259), Expect = 3e-25
Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 504 DLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
++ +P T++GERGV +SGGQ+QR+ +ARA ++ I +LD+ ++LD+++ +
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVN 620
+ + +T L++ H++ + D I I G+I + ++ L+ T + V+
Sbjct: 181 -ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (478), Expect = 6e-54
Identities = 57/277 (20%), Positives = 112/277 (40%), Gaps = 26/277 (9%)
Query: 970 VSVERLN-QYMRIPSEAPELVQKNSPAPDWPPT-GKVEIYDLQIRYRPNAPLVLRGITCT 1027
+ +E + + E E VQ+++ V L + P VL+ I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQD 1087
E G + + G TGSGKT+L+ + +E + G I G + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF 105
Query: 1088 PTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANW 1147
+ G+++ N+ + + V++ CQL++ I + E ++++ + G
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKS------VVKACQLQQDITKFAEQDNTVLGEGGVTL 159
Query: 1148 SMGQRQLIGLGRVVLRRRQILVLDEATASIDNAT-DSILQNTIRREFANCTVITVAHRIA 1206
S GQR I L R V + + +LD +D T + + ++ + + AN T I V ++
Sbjct: 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME 219
Query: 1207 TVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
+ + +L + G Y +L + ++L+
Sbjct: 220 HLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 143 bits (362), Expect = 1e-38
Identities = 73/256 (28%), Positives = 104/256 (40%), Gaps = 56/256 (21%)
Query: 416 DRIANFLEAPELQNSDMQQVCSRAELEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEK 475
+ LE + N D + + S L NP L+NINL ++ E
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFS------HLCLVG---NPVLKNINLNIEKGEM 64
Query: 476 FAICGEVGAGKSTLLAAILGELPRLQG--------------------------------- 502
AI G G+GK++LL ILGEL +G
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYD 124
Query: 503 --------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548
D+ D T +GE GV LSGGQ+ RI LARA+Y+D D+YLLD
Sbjct: 125 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184
Query: 549 PFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHL 608
PF LD T + +F V ++ KT +LVT +++ L D IL++ G T+ L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244
Query: 609 LVTSQEFQDLVNAHKE 624
+F + +
Sbjct: 245 QSLRPDFSSKLMGYDT 260
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 126 bits (318), Expect = 6e-33
Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
K+ + DL RY + VL+G++ G I ++G +GSGK+T + + L +P+ G I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1063 IIDGLDITTIGLYD-------------LRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQE 1109
I++G +I + D LR+ L ++ Q L+ ++ +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW--------SHMTVL--EN 109
Query: 1110 IWEVTIPSQVLEKCQLREVIQE--KKEGL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQ 1166
+ E I L K RE + K G+ + + + S GQ+Q + + R +
Sbjct: 110 VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 169
Query: 1167 ILVLDEATASID-NATDSILQNTIRREFANCTVITVAHRIATVMD-CNMVLSMSDGKLVE 1224
+L+ DE T+++D +L+ + T++ V H + + V+ + GK+ E
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 1225 YDEPKKLLRRQDSLFAQ 1241
+P+++ S Q
Sbjct: 230 EGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 70.3 bits (172), Expect = 1e-13
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQ 581
+LSGGQ+QR+ +ARAL + D+ L D+P SALD + + A KT+++VTH+
Sbjct: 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 208
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHLL 609
+ F ++ + G+I + + +
Sbjct: 209 MGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFG-DLTQIGERGV 521
L+ ++L+ + + +I G G+GKST L I +G ++ G ++ + ++
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG---AIIVNGQNINLVRDKDG 74
Query: 522 NLSGGQKQRIQLARA----LYQDRDIYLLDDPFSALD 554
L K +++L R ++Q + L + L+
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQH---FNLWSHMTVLE 108
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 121 bits (304), Expect = 3e-31
Identities = 54/246 (21%), Positives = 108/246 (43%), Gaps = 24/246 (9%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
+V++ +L R+ + + T + G + ++G +G GKTT + + L EPT G+I
Sbjct: 6 EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLD---PLSQFTDQEIWEVTIPSQ 1118
D+T L N+ ++ Q ++ +V N+ + +F EI +
Sbjct: 64 YFGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR--W 119
Query: 1119 VLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
E Q+ E++ L S GQRQ + + R ++ +L++DE +++D
Sbjct: 120 AAELLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 1179 NATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235
++ I++ + T I V H M + + M+ G+L++ P ++ R
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228
Query: 1236 DSLFAQ 1241
+S+F
Sbjct: 229 NSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 91.8 bits (228), Expect = 3e-21
Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 57/204 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP------- 509
+ +NL +K E + G G GK+T L I G D+ LP
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 510 --------FGDLT-----------------QIGERGV-----------------NLSGGQ 527
+ +T +I +R LSGGQ
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQ 141
Query: 528 KQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQVDFLP 586
+QR+ +ARA+ + D+ L+D+P S LDAK + E + K T + VTH
Sbjct: 142 RQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
Query: 587 AF-DSILLISGGEIIQAATYDHLL 609
D I +++ G+++Q + +
Sbjct: 202 TMGDRIAVMNRGQLLQIGSPTEVY 225
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 118 bits (298), Expect = 1e-30
Identities = 43/238 (18%), Positives = 102/238 (42%), Gaps = 21/238 (8%)
Query: 1004 VEIYDLQIRYRPNAPL--VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+++ ++ Y+ + L+ + + G + ++G +GSGK+T+++ + L +PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1062 IIIDGLDITTIGLYDL----RSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIP 1116
+ ID + + +L R +G + Q L + N+ E+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV---------ELPLIFKY 112
Query: 1117 SQVLEKCQLREVIQEKKE--GL-DSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEA 1173
+ + R+ E + L + S GQ+Q + + R + I++ D+
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 1174 TASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPK 1229
T ++D+ T + +++ E TV+ V H I ++ + DG++ ++ +
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 72.6 bits (178), Expect = 1e-14
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVT 579
LSGGQ+QR+ +ARAL + I L D P ALD+KT + + + L+++ TV++VT
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL--LKKLNEEDGKTVVVVT 203
Query: 580 HQVDFLPAFDSILLISGGEIIQ 601
H ++ + I+ + GE+ +
Sbjct: 204 HDINVARFGERIIYLKDGEVER 225
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.8 bits (106), Expect = 2e-05
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLTQI 516
L+N+NL +K E +I G G+GKST+L I + + L +LT+I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-30
Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 25/250 (10%)
Query: 1004 VEIYDLQIRYRPNAPLV--LRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
+++ ++ + + L ++ G GV+G +G+GK+TLI + L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1062 IIIDGLDITTIGLYD---LRSNLGIIPQDPTLF-SGSVRYNLDP---LSQFTDQEIWEVT 1114
+++DG ++TT+ + R +G+I Q L S +V N+ L E+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1115 IPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEAT 1174
++L L + L S GQ+Q + + R + ++L+ DEAT
Sbjct: 122 T--ELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 1175 ASIDNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231
+++D AT + ++ T++ + H + V C+ V +S+G+L+E D ++
Sbjct: 169 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Query: 1232 LRRQDSLFAQ 1241
+ AQ
Sbjct: 229 FSHPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 66.8 bits (163), Expect = 1e-12
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTH 580
NLSGGQKQR+ +ARAL + + L D+ SALD T + + + T+LL+TH
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 581 QVDFLPAF-DSILLISGGEIIQAATYDHLL 609
++D + D + +IS GE+I+ T +
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQDTVSEVF 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 111 bits (278), Expect = 7e-28
Identities = 48/252 (19%), Positives = 109/252 (43%), Gaps = 23/252 (9%)
Query: 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
G V + DL+ R +L+GI+ E G G++G G+GKTT + + L++P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLE 1121
+ + G +++R + +P++ + E
Sbjct: 59 VTVFG-KNVVEEPHEVRKLISYLPEEAGAY-----------RNMQGIEYLRFVAGFYASS 106
Query: 1122 KCQLREVIQEKKE--GLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
++ E+++ E GL + + +S G + + + R ++ ++ +LDE T+ +D
Sbjct: 107 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 1180 ATDSILQNTIRREFANC-TVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDS 1237
++ +++ T++ +H + V C+ + + +G +VE ++L R +
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
Query: 1238 -----LFAQLVK 1244
+F ++VK
Sbjct: 227 QNIEEVFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 82.7 bits (204), Expect = 5e-18
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 57/204 (27%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLTQI 516
L+ I+ E++ E F + G GAGK+T L I + + G ++ P I
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 517 G--------------------------------------------------ERGVNLSGG 526
+R S G
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKG 137
Query: 527 QKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586
+++ +ARAL + + +LD+P S LD A+ + + T+L+ +H + +
Sbjct: 138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE 197
Query: 587 AF-DSILLISGGEIIQAATYDHLL 609
D I LI G I++ T + L
Sbjct: 198 FLCDRIALIHNGTIVETGTVEELK 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 109 bits (274), Expect = 2e-27
Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 28/228 (12%)
Query: 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079
L ++ G + +VG G+GK+TL++ + + G I G + L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 72
Query: 1080 NLGIIPQDPTL-FSGSVRYNL-DPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLD 1137
+ + Q T F+ V + L T E+ V LD
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN-----DVAGAL-----------ALD 116
Query: 1138 SLVVQDGANWSMGQRQLIGLGRVVLR-------RRQILVLDEATASIDNATDSILQNTIR 1190
+ + S G+ Q + L VVL+ Q+L+LDE S+D A S L +
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 176
Query: 1191 R-EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
++ +H + + + + GK++ +++L +
Sbjct: 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 59/206 (28%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP-----RLQGMDLKMLPFGDL---- 513
L ++ EV+ E + G GAGKSTLLA + G + G L+ L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 514 ------------------------------------------TQIGERGVNLSGGQKQRI 531
++G LSGG+ QR+
Sbjct: 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134
Query: 532 QLARALYQ-------DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF 584
+LA + Q + LLD+P ++LD L +++ +H ++
Sbjct: 135 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH 194
Query: 585 LPAF-DSILLISGGEIIQAATYDHLL 609
L+ GG+++ + + +L
Sbjct: 195 TLRHAHRAWLLKGGKMLASGRREEVL 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 109 bits (273), Expect = 4e-27
Identities = 46/247 (18%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
++ + ++ ++ + L + E G + G++G +G+GKTT + + L P+ G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1063 IIDGLDITTIGLYDLRS---NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQV 1119
D + + G + +G++ Q L+ T E + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALY-----------PNLTAFENIAFPLTNMK 111
Query: 1120 LEKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASI 1177
+ K ++R+ ++E K + ++ S Q+Q + L R +++ +L+LDE +++
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1178 DNATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234
D + ++ T++ V+H A + + V + GKLV+ +P+ L
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 1235 QDSLFAQ 1241
S+
Sbjct: 232 PVSIQVA 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 55.9 bits (134), Expect = 6e-09
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSG Q+QR+ LARAL +D + LLD+PFS LDA+ + + T+L+V+H
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHLL 609
+ A D + ++ G+++Q + L
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKPEDLY 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 49.3 bits (117), Expect = 9e-07
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGM 503
L N+N+ ++ E+F I G GAGK+T + I G G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (264), Expect = 6e-26
Identities = 50/244 (20%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKI 1062
V + D+ + +R ++ + G + ++G +G GKTT + + L EP+ G+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1063 IIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEK 1122
I + D + + P+D + Y L P D + + + + + +
Sbjct: 61 YIGDKLVA-----DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL--RKVPR 113
Query: 1123 CQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
++ + ++E + GL L+ + S GQRQ + LGR ++R+ Q+ ++DE +++D
Sbjct: 114 QEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 1181 TDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDS 1237
++ +++ T I V H M + + M+ G L + P ++ + +
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
Query: 1238 LFAQ 1241
F
Sbjct: 234 TFVA 237
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 74.6 bits (183), Expect = 3e-15
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTH 580
LSGGQ+QR+ L RA+ + ++L+D+P S LDAK + E + T + VTH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 581 QVDFLPAF-DSILLISGGEIIQAATYDHLL 609
D I +++ G + Q + D +
Sbjct: 199 DQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 48.0 bits (114), Expect = 2e-06
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
+R ++LEVK E + G G GK+T L I G
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (260), Expect = 3e-25
Identities = 42/238 (17%), Positives = 100/238 (42%), Gaps = 9/238 (3%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+ ++ + L G++ + G ++G GSGK+TLI+ + ++ G++
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1064 IDGLDITTIGLYDL-RSNLGIIPQDPTLFSG-SVRYNLD-PLSQFTDQEIWEVTIPSQVL 1120
+ DIT +L + Q P +V NL + + + +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1121 EKCQLREVIQE--KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID 1178
++ ++ E + + L L + S GQ +L+ +GR ++ +++V+DE A +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1179 NATDSILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234
+ N + A T + + HR+ V++ + + M +G+++ ++ ++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 70.4 bits (172), Expect = 1e-13
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 505 LKMLPFGDLTQIGERGV-NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFT 563
K+L F L+ + +R LSGGQ + +++ RAL + + ++D+P + + A +F
Sbjct: 132 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 564 EYVMGALSKKTVLLVTHQVDFLPAF-DSILLISGGEIIQAATYDHLLVTSQEFQDLVNA 621
+ T L++ H++D + + D + ++ G+II + + +V
Sbjct: 192 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 50.0 bits (119), Expect = 6e-07
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLPFGDLTQI 516
L +++ V + I G G+GKSTL+ I G L + D+ +L
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 517 GERGV 521
G
Sbjct: 80 GIVRT 84
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 1e-24
Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 24/245 (9%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
V++ ++ + +V + I G + VG +G GK+TL+ + L T G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRY-NLD---PLSQFTDQEIWEVTIPSQV 1119
I + +G++ Q L+ N+ L+ + I + +QV
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 1120 LEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDN 1179
E QL ++ K + L S GQRQ + +GR ++ + +LDE +++D
Sbjct: 115 AEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 163
Query: 1180 ATDSILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
A ++ I R + T+I V H M + ++ + G++ + +P +L
Sbjct: 164 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 223
Query: 1237 SLFAQ 1241
F
Sbjct: 224 DRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 64.2 bits (156), Expect = 8e-12
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 522 NLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTH 580
LSGGQ+QR+ + R L + ++LLD+P S LDA + E + +T++ VTH
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 189
Query: 581 QVDFLPAF-DSILLISGGEIIQAATYDHLL 609
D I+++ G + Q L
Sbjct: 190 DQVEAMTLADKIVVLDAGRVAQVGKPLELY 219
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 100 bits (250), Expect = 3e-24
Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 20/241 (8%)
Query: 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKII 1063
+EI L +++ L ++ E G ++G TG+GKT + + P G+I+
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1064 IDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
+DG D+T L + ++ + Q+ +LF + + ++ P +VL+
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDTA 112
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
+ ++ LD + S G++Q + L R ++ +IL+LDE +++D T
Sbjct: 113 RDLKIE----HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1184 ILQNTIRR--EFANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFA 1240
+ + + TV+ + H + + + DGKL++ +P+++ +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224
Query: 1241 Q 1241
Sbjct: 225 A 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 57.0 bits (137), Expect = 2e-09
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQ 581
LSGG++QR+ LARAL + I LLD+P SALD +T + + +K TVL +TH
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 582 VDFLPAF-DSILLISGGEIIQAATYDHLL 609
D I ++ G++IQ + +
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIF 216
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 100 bits (251), Expect = 3e-24
Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT 1089
G ++G TG+GK+ + + +V+P G++ ++G DIT + R +G +PQD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQD-- 78
Query: 1090 LFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSM 1149
Y L P + + +V ++RE+ +K G+ L+ + A S
Sbjct: 79 -------YALFPHLSVYRNIAYGLRNVERVERDRRVREMA--EKLGIAHLLDRKPARLSG 129
Query: 1150 GQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRR--EFANCTVITVAHRIAT 1207
G+RQ + L R ++ + ++L+LDE +++D T +L +R + ++ V H +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 1208 VMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLV 1243
+ V M +G++VE + K+L ++ A+ +
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.7 bits (170), Expect = 1e-13
Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 56/200 (28%)
Query: 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMDLKMLP--------- 509
N++ E+ + + G GAGKS L I G + RL G D+ LP
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 510 --------------------------------------FGDLTQIGERGVNLSGGQKQRI 531
G + + LSGG++QR+
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135
Query: 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYV-MGALSKKTVLLVTHQVDFLPAF-D 589
LARAL + LLD+P SA+D KT L E + +L VTH + D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 590 SILLISGGEIIQAATYDHLL 609
+ ++ G I++ L
Sbjct: 196 EVAVMLNGRIVEKGKLKELF 215
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 95.0 bits (236), Expect = 1e-22
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 1003 KVEIYDLQIRY-RPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061
K+EI DL + Y +P VL IT T E G+ + G G GKTTL+ + ++P G+
Sbjct: 2 KLEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1062 IIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG-SVRYNLDPLSQFTDQEIWEVTIPSQVL 1120
II +G+ I ++ + +P++ + SV L ++ ++ + I L
Sbjct: 58 IIYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI-MDAL 111
Query: 1121 EKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNA 1180
E ++ ++ ++ S G + + L +L +I VLD+ +ID
Sbjct: 112 ESVEVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159
Query: 1181 TDSILQNTIRREFANCTVITVAHR 1204
+ + +I ++ ++ R
Sbjct: 160 SKHKVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.1 bits (200), Expect = 8e-18
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 54/177 (30%)
Query: 460 NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP------RLQGMD--------- 504
P L I + ++ G G GK+TLL I L G+
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 505 ----------------------------------LKMLPFGDLTQIGERGVNLSGGQKQR 530
+ L ++ + ++ LS G +R
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRR 133
Query: 531 IQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKK---TVLLVTHQVDF 584
+QLA L + +IY+LDDP A+D + + + + K+ ++ ++ +
Sbjct: 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS--ILEILKEKGIVIISSREELSY 188
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 14/235 (5%)
Query: 1005 EIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064
E+ L + Y ++GI G + ++G G+GKTT +SA+ LV GKII
Sbjct: 8 EVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1065 DGLDITTIGLYDLRS-NLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKC 1123
+G DIT + + + ++P+ +F P + +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIF---------PELTVYENLMMGAYNRKDKEGIK 116
Query: 1124 QLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183
+ E I L + Q G S G++Q++ +GR ++ R ++L++DE + + S
Sbjct: 117 RDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 1184 ILQNTIRREFA-NCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQD 1236
+ I++ T++ V + + + G++V + +LL +
Sbjct: 177 EVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 73.4 bits (180), Expect = 7e-15
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 518 ERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLL 577
+ G LSGG++Q + + RAL + ++D+P L +F T+LL
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
Query: 578 VTHQVDFLPAF-DSILLISGGEIIQAATYDHLL 609
V ++ G+I+ LL
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 48.8 bits (116), Expect = 1e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498
++ I+L+V + + G GAGK+T L+AI G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 74.6 bits (182), Expect = 8e-16
Identities = 21/213 (9%), Positives = 46/213 (21%), Gaps = 39/213 (18%)
Query: 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFS 1092
KI + G G GKTTL+ + + + + + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1093 GSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQR 1152
S + + +E
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------------ELAIPI 87
Query: 1153 QLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCN 1212
RR+++++DE + N V+
Sbjct: 88 LERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVK 147
Query: 1213 MVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVKE 1245
+ + L+E + D + ++
Sbjct: 148 EIRRLPGAVLIELTPENR-----DVILEDILSL 175
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 62.7 bits (151), Expect = 1e-11
Identities = 21/159 (13%), Positives = 36/159 (22%), Gaps = 33/159 (20%)
Query: 475 KFAICGEVGAGKSTLLAAILGELPRLQG-------------------------------- 502
K I GE G GK+TL+ I+ L +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 503 MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLF 562
+ + A R + ++D+
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121
Query: 563 TEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQ 601
+M V+ D P I + G +I+
Sbjct: 122 VRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIE 159
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.7 bits (169), Expect = 5e-14
Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 1/171 (0%)
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSG 1093
+ + G G GKTTLI +++ +G + + G + ++ + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1094 SVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153
+ + + L LR G V+ + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHR 1204
I R L ++L +++ R+ +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 65.3 bits (157), Expect = 9e-12
Identities = 28/311 (9%), Positives = 90/311 (28%), Gaps = 2/311 (0%)
Query: 118 LRALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLV 177
L I+ ++ +G ++ S + LK + G+ ++ + + L+
Sbjct: 7 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM 66
Query: 178 KCVESLAGRHWFFQSRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYR 237
+ + S ++G + + T +
Sbjct: 67 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQV 126
Query: 238 IGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSPLAKLQHKYQET 297
+ + ++++Y +I +++ + + ++K +
Sbjct: 127 ASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKN 186
Query: 298 FMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLF 357
+ + ++L K + ++ +K+ ++ + +
Sbjct: 187 MQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPII 246
Query: 358 WSSPILIGAATLLTCYFLGI--PLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSL 415
L A L F + L + +++ L P++ L +V F +
Sbjct: 247 QLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 306
Query: 416 DRIANFLEAPE 426
+ L++ +
Sbjct: 307 QTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 61.1 bits (146), Expect = 3e-10
Identities = 42/322 (13%), Positives = 96/322 (29%), Gaps = 12/322 (3%)
Query: 117 ILRALIS---CHWKSILFSGFFALIKVISISAGPLFLKAFI------SAAEGEIIFKYEI 167
+++ + + I + +IK PL +K I A + +
Sbjct: 1 MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLT 60
Query: 168 YSLAISLFLVKCVESLAGRHWFFQ-SRLTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGD 226
++ I+LF+ V + + + + Q +
Sbjct: 61 IAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQV 120
Query: 227 IVNYVTVDAYRIGEFPFWFHQIWSTSLQLCIAVVVVYYSVGLATIATLIVMILTVLGNSP 286
I + IW + + IA+ ++++ T+A L + +L
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 287 LAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVL 346
K A + + E + + V+K +A + +K +
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 347 QLQKGYYMVLFWSSPILIGAATLLTCYFLGI--PLNPSNVFTFLATLRILQEPIRLLPDV 404
Y + + + +L I + + F+ L +L P+R L
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 405 FGAFIEAKVSLDRIANFLEAPE 426
F ++ S+DR+ ++
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDY 322
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.004
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 1034 IGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD 1076
+ +G+GKTTL+ L + G + + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1255 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.97 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.97 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.97 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.97 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.97 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.97 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.97 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.97 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.97 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.52 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.5 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.37 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.23 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.2 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.98 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.88 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.78 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.64 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.36 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.35 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.26 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.96 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.89 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.54 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.42 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.42 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.31 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.19 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.01 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.76 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.72 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.71 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.65 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.6 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.59 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.41 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.32 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.19 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.12 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.09 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.07 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.03 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.96 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.96 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.82 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.8 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.79 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.75 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.71 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.61 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.59 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.56 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.51 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.46 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.46 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.39 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.31 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.23 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.19 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.12 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.11 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.06 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.99 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.84 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.8 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.78 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.75 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.73 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.69 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.68 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.67 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.58 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.57 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.51 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.49 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.48 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.32 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.32 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.32 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.25 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.17 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.11 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.83 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.83 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.74 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.72 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.7 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.7 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.62 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.5 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.48 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.39 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.34 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.33 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.32 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.26 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.24 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.18 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.16 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.15 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.14 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.14 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.07 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.02 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.01 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.94 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.84 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.8 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.77 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.65 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.62 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.59 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.54 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.5 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.48 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.47 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.41 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 91.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.31 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.27 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.26 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.16 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.15 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.12 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.06 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.97 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.94 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.93 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.91 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.89 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.81 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.76 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.76 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.73 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.61 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.61 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.56 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.54 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.47 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.46 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.41 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.35 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.34 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.3 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.18 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.13 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.08 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.08 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.08 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.87 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.77 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.74 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.71 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.63 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.59 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.57 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.51 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.4 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.39 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.34 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.31 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.21 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.12 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.11 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 89.05 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.04 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.02 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.01 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 88.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.85 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.85 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.81 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.74 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.73 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.72 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.7 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.66 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.61 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.61 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 88.51 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.5 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.43 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 88.36 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.32 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.24 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.17 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.17 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.17 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.17 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.13 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.03 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.99 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.99 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.98 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.9 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 87.87 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 87.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.65 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.59 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.56 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 87.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.28 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.24 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.11 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.1 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.05 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.02 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.01 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.91 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.84 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.84 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.82 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.72 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.68 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.47 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.4 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.33 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.28 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 86.26 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.23 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.2 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.18 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.16 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.14 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.06 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.91 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.86 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.82 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.8 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 85.78 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 85.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 85.75 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.74 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.72 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.64 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.62 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.62 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.59 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 85.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.44 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.43 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.42 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.4 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.39 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.27 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.25 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.25 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 85.1 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.01 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.93 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.87 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.87 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.86 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.81 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.77 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 84.76 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 84.71 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.69 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.57 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.45 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.44 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.21 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.19 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.12 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.11 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.84 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.75 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.74 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 83.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.56 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.53 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.53 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.52 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.22 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 83.17 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.14 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.12 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.01 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.99 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.98 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 82.82 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 82.71 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.69 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 82.5 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.34 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.29 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.26 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 82.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.07 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.81 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.77 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.77 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.51 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 81.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.47 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.26 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.21 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.2 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.17 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 80.95 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.88 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.76 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 80.69 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.61 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 80.33 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.25 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=496.79 Aligned_cols=237 Identities=31% Similarity=0.560 Sum_probs=228.8
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999478641417
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|+|||.|++.++.+.+|++|+
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCCC-CCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8716875577752221566999-996889840595259976247999996313863000079998892499999999998
Q 000845 1083 IIPQDPTLFSGSVRYNLDPLSQ-FTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1083 ~VpQ~p~LF~gTIr~NLdp~~~-~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
||||+|.+|++||++||.+..+ .+++++++ +++.+++.+++..+|.|+++.++++|.+||||||||+|||||+
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIY------AAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHH------HHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9824465578400035223575543888999------9999755788876320134432787886698898987544344
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 15999399866888999997999999999874993899862691113111989999598798976933886219918999
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1162 L~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~~f~~ 1241 (1255)
+++|+|||||||||+||+.+++.|.+.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|++|++++++.|++
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~ 234 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHH
T ss_pred HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
T ss_conf 41651355647765559899999999999985899899997889999849999999899999988999998299878999
Q ss_pred HHHH
Q ss_conf 9999
Q 000845 1242 LVKE 1245 (1255)
Q Consensus 1242 l~~~ 1245 (1255)
|++.
T Consensus 235 l~~~ 238 (241)
T d2pmka1 235 LYQL 238 (241)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=495.85 Aligned_cols=239 Identities=30% Similarity=0.509 Sum_probs=229.1
Q ss_pred CCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98608999899995799994021125897489499999489994899999984258899878999697389999478641
Q 000845 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1000 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~ 1079 (1255)
..|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred CCEEECCCCCCCCCCHHHHCCCCC-CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 417871687557775222156699-9996889840595259976247999996313863000079998892499999999
Q 000845 1080 NLGIIPQDPTLFSGSVRYNLDPLS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1080 ~i~~VpQ~p~LF~gTIr~NLdp~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
+|+||||+|.+|++|||+||.... ..+++++++ +++.+++++++..+|+|+||.++++|.+||||||||+|||
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~------al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVE------AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHH------HHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHH------HHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 1456510156899879999851586799999999------9999697999973624201033388898499999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
Q ss_conf 99815999399866888999997999999999874993899862691113111989999598798976933886219918
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238 (1255)
Q Consensus 1159 RAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~~ 1238 (1255)
|||+++|+|+|||||||+||++|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~ 245 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGA 245 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSH
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCH
T ss_conf 9985599899983765447977999999999987538889999689999985999999989999998899999868-849
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000845 1239 FAQLVKE 1245 (1255)
Q Consensus 1239 f~~l~~~ 1245 (1255)
|++|++.
T Consensus 246 y~~l~~~ 252 (255)
T d2hyda1 246 YEHLYSI 252 (255)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
T ss_conf 9999997
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=485.88 Aligned_cols=239 Identities=30% Similarity=0.516 Sum_probs=228.8
Q ss_pred CCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 98608999899995799994021125897489499999489994899999984258899878999697389999478641
Q 000845 1000 PTGKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1000 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~ 1079 (1255)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||.|+++++.+.+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 41787168755777522215669--9999688984059525997624799999631386300007999889249999999
Q 000845 1080 NLGIIPQDPTLFSGSVRYNLDPL--SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1080 ~i~~VpQ~p~LF~gTIr~NLdp~--~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+++||||+|.+|++|+++|+... ...+++++++ +++.+++.++++.+|+||++.++++|.+||||||||+||
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~------a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvai 163 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE------AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 163 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHH------HHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHH------HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 68799502544786202433205722089999999------999981799997355441014348889849999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
Q ss_conf 99981599939986688899999799999999987499389986269111311198999959879897693388621991
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDS 1237 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~ 1237 (1255)
||||+++|+|||||||||+||++++..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|+|+|+||+++ ++
T Consensus 164 ARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~ 242 (253)
T d3b60a1 164 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HG 242 (253)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TS
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CC
T ss_conf 99995499889951644458988999999999875227889999887999985999999989999998899999868-93
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q 000845 1238 LFAQLVKE 1245 (1255)
Q Consensus 1238 ~f~~l~~~ 1245 (1255)
.|++|++.
T Consensus 243 ~y~~l~~~ 250 (253)
T d3b60a1 243 VYAQLHKM 250 (253)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=475.04 Aligned_cols=239 Identities=26% Similarity=0.425 Sum_probs=223.4
Q ss_pred CCCCEEEEEEEEEEECCC-CCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 998608999899995799-9940211258974894999994899948999999842588998789996973899994786
Q 000845 999 PPTGKVEIYDLQIRYRPN-APLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL 1077 (1255)
Q Consensus 999 p~~g~I~~~nvsf~Y~~~-~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~l 1077 (1255)
+..|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|++||.|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf 4141787168755777522215669--99996889840595259976247999996313863000079998892499999
Q 000845 1078 RSNLGIIPQDPTLFSGSVRYNLDPL--SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1078 R~~i~~VpQ~p~LF~gTIr~NLdp~--~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
|++|++|||+|.+|++||++|+... ...+++++++ +.+++++.+++..+|.|+++.++++|.+||||||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~------~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRv 160 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA------AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAV 160 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHH------HHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH------HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEE
T ss_conf 8776540456500276346554542101302788999------9999989999985612111367516766895470489
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999998159993998668889999979999999998749--938998626911131119899995987989769338862
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFA--NCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLR 1233 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~ 1233 (1255)
||||||+++|+|+|||||||+||+.++..|++.|++..+ ++|+|+||||++.+..||||+||++|+|+|.|+|+||++
T Consensus 161 aiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 161 ALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98604456870787167576568536899999999976506989999959799998599999998999999889999985
Q ss_pred CCCHHHHHHHH
Q ss_conf 19918999999
Q 000845 1234 RQDSLFAQLVK 1244 (1255)
Q Consensus 1234 ~~~~~f~~l~~ 1244 (1255)
+ ++.|++|++
T Consensus 241 ~-~~~y~~l~~ 250 (251)
T d1jj7a_ 241 K-KGCYWAMVQ 250 (251)
T ss_dssp H-TSHHHHHHC
T ss_pred C-CCHHHHHHC
T ss_conf 9-758899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=480.23 Aligned_cols=234 Identities=31% Similarity=0.558 Sum_probs=223.5
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999957999940211258974894999994899948999999842588998789996973899994786414178
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+|+|+. .+++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.+||.|+++++.+.+|++|+|
T Consensus 2 le~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 799988998799-9841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7168755777522215669--99996889840595259976247999996313863000079998892499999999998
Q 000845 1084 IPQDPTLFSGSVRYNLDPL--SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1084 VpQ~p~LF~gTIr~NLdp~--~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
|||+|.+|++|||+|+... ...+++++++ +++.+++.+++..+|+++++.++++|.+||||||||+||||||
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal 154 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ------VLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHH------HHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHH------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7566545785345430124455542356778------9999975554203742101523687898799999999999998
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 15999399866888999997999999999874993899862691113111989999598798976933886219918999
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQ 1241 (1255)
Q Consensus 1162 L~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~~f~~ 1241 (1255)
+++|+|||||||||+||+.++..|++.|++..+++|+|+||||++.+..||||+||++|+|+|.|+|+||+++ ++.|++
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~ 233 (242)
T d1mv5a_ 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAK 233 (242)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHH
T ss_conf 5299899965886556988999998878887179989999787999984999999989999999999999868-969999
Q ss_pred HHHH
Q ss_conf 9999
Q 000845 1242 LVKE 1245 (1255)
Q Consensus 1242 l~~~ 1245 (1255)
++++
T Consensus 234 l~~~ 237 (242)
T d1mv5a_ 234 YVSE 237 (242)
T ss_dssp HHHC
T ss_pred HHHH
T ss_conf 9999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=401.88 Aligned_cols=218 Identities=23% Similarity=0.339 Sum_probs=197.6
Q ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 60899989999579999402112589748949999948999489999998425889987899969738999947864141
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
+.|.|+|+++. ..|||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 37 ~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 37 NNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp ---CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred CCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf 96799976989----97677375999859999999989998299999999579747882899999-------------99
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78716875577752221566999996889840595259976247999996313863000079998892499999999998
Q 000845 1082 GIIPQDPTLFSGSVRYNLDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1082 ~~VpQ~p~LF~gTIr~NLdp~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
+|+||+|.+|++||++|+.+.....+.+.++ +++.+++.+.+..+|+++++.+++.|.+||||||||++|||||
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~------~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL 173 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKS------VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV 173 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHH------HHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCHHHHH------HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9981643026760321420333456057999------9999776999984612332355554237799999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 159993998668889999979999999-9987499389986269111311198999959879897693388621991899
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNT-IRREFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFA 1240 (1255)
Q Consensus 1162 L~~~~ILiLDEaTS~lD~~te~~I~~~-l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~~f~ 1240 (1255)
+++|+|||||||||+||+.++..+.+. +....+++|+|+|+||++.+..||||++|++|+|+++|+|+||++. .+.|+
T Consensus 174 ~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~ 252 (281)
T d1r0wa_ 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFS 252 (281)
T ss_dssp HSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHH
T ss_pred HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHH
T ss_conf 86963513338554489899999999999886289999999252899985999999989999998789999605-94899
Q ss_pred HHH
Q ss_conf 999
Q 000845 1241 QLV 1243 (1255)
Q Consensus 1241 ~l~ 1243 (1255)
+..
T Consensus 253 ~~~ 255 (281)
T d1r0wa_ 253 SKL 255 (281)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-44 Score=360.65 Aligned_cols=216 Identities=23% Similarity=0.347 Sum_probs=189.5
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999957999940211258974894999994899948999999842588998789996973899994786414178
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.. |++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---CCH----HHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf 7168755777-52221566999---996----889840595259976247999996313863000079998892499999
Q 000845 1084 IPQDPTLFSG-SVRYNLDPLSQ---FTD----QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1084 VpQ~p~LF~g-TIr~NLdp~~~---~sd----~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
|||+|.+|.. |++||+..... .+. +.+.+ +++.+++.++.++.| ..||||||||+
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~------~l~~~~l~~~~~~~~-----------~~LSGGqkQRv 139 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ------VAEVLQLAHLLDRKP-----------KALSGGQRQRV 139 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHH------HHHHC--------------------------------
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHCCCHHHHHCCH-----------HHCCHHHHHHH
T ss_conf 4334202643337889789998759988999999999------997578865664896-----------56999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999815999399866888999997999999999874--99389986269111311-1989999598798976933886
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll 1232 (1255)
+|||||+.+|++|+|||||++||+.+...|++.|++.. .++|+|+|+|++..+.. ||||++|++|+|++.|+|.+++
T Consensus 140 aiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 140 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99999703998899758887889889989999999998742987999948999999969999999799999980899997
Q ss_pred HCCCHHHH
Q ss_conf 21991899
Q 000845 1233 RRQDSLFA 1240 (1255)
Q Consensus 1233 ~~~~~~f~ 1240 (1255)
++|...|-
T Consensus 220 ~~P~~~~v 227 (232)
T d2awna2 220 HYPADRFV 227 (232)
T ss_dssp HSCSBHHH
T ss_pred HCCCCHHH
T ss_conf 38999799
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1e-43 Score=355.83 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=189.7
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999478641417
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|++..+.. |++|+
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 87168755777-5222156699---9996889840595259976247999996313863000079998892499999999
Q 000845 1083 IIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1083 ~VpQ~p~LF~g-TIr~NLdp~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
||||+|.+|.. |+++|+.... ..+.+++.+ ....+++.+++. .........||||||||++||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~--~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK--RVRWAAELLQIE-----------ELLNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHH--HHHHHHHHTTCG-----------GGTTSCTTTCCSSCHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHHHHH
T ss_conf 9800335342220999999999873999999999--999999875985-----------566099546999998899997
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99815999399866888999997999999999874--99389986269111311-1989999598798976933886219
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll~~~ 1235 (1255)
|||..+|+||+||||||+||+.+...+++.|++.. .++|+|+|||++..+.. ||||++|++|+|++.|+|+++.++|
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 66404998243068866689899989999999998731980799948999999869999999899999985999998689
Q ss_pred CHHHH
Q ss_conf 91899
Q 000845 1236 DSLFA 1240 (1255)
Q Consensus 1236 ~~~f~ 1240 (1255)
...|-
T Consensus 229 ~~~~~ 233 (239)
T d1v43a3 229 NSVFV 233 (239)
T ss_dssp SBHHH
T ss_pred CCHHH
T ss_conf 99899
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7e-45 Score=364.90 Aligned_cols=225 Identities=20% Similarity=0.347 Sum_probs=190.0
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999---478641
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG---LYDLRS 1079 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~---~~~lR~ 1079 (1255)
.|+++||+.+|+.+...+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCCCC-C--CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf 41787168755777-522215669-9--9996889840595259976247999996313863000079998892499999
Q 000845 1080 NLGIIPQDPTLFSG-SVRYNLDPL-S--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLI 1155 (1255)
Q Consensus 1080 ~i~~VpQ~p~LF~g-TIr~NLdp~-~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1155 (1255)
+|++|+|+|.||+. |++||+... . ..+.++..+ ...++++.+++.++. ......||||||||+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~--~v~~~l~~~gL~~~~-----------~~~p~~LSGGqkQRv 149 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK--RVEEVAKILDIHHVL-----------NHFPRELSGAQQQRV 149 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH--HHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHCCHHHHH-----------HCCHHHCCHHHHHHH
T ss_conf 5147730433466665777766556761379999999--999998665917666-----------489545999998589
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999815999399866888999997999999999874--99389986269111311-1989999598798976933886
Q 000845 1156 GLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLL 1232 (1255)
Q Consensus 1156 ~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll 1232 (1255)
+|||||..+|+||++||||++||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 98757760466145447866799899889989999998635987999979999999969999999899999986999998
Q ss_pred HCCCHHHH
Q ss_conf 21991899
Q 000845 1233 RRQDSLFA 1240 (1255)
Q Consensus 1233 ~~~~~~f~ 1240 (1255)
++|...|-
T Consensus 230 ~~P~~~~~ 237 (242)
T d1oxxk2 230 DNPVSIQV 237 (242)
T ss_dssp HSCSSHHH
T ss_pred HCCCCHHH
T ss_conf 68999799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.9e-44 Score=360.09 Aligned_cols=214 Identities=21% Similarity=0.395 Sum_probs=187.6
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999957999940211258974894999994899948999999842588998789996973899994786414178
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
|+++|++++|.. .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+++.. |++|++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCCCC----CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 7168755777-522215669----99996889840595259976247999996313863000079998892499999999
Q 000845 1084 IPQDPTLFSG-SVRYNLDPL----SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLG 1158 (1255)
Q Consensus 1084 VpQ~p~LF~g-TIr~NLdp~----~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lA 1158 (1255)
|||++.+|.. |++||+... +...++++.+ +++.+++.++. | .....||||||||++||
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~------~l~~~~l~~~~-------~----~~~~~LSGG~~QRvaiA 139 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD------TARDLKIEHLL-------D----RNPLTLSGGEQQRVALA 139 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHH------HHHHTTCTTTT-------T----SCGGGSCHHHHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH------HHHHHCCHHHH-------H----CCHHHCCHHHHCCHHHH
T ss_conf 5121111746657788888776405538999999------99982565557-------5----89554799984014030
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99815999399866888999997999999999874--99389986269111311-1989999598798976933886219
Q 000845 1159 RVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1159 RAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll~~~ 1235 (1255)
|||+.+|+||+||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|
T Consensus 140 raL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 43443677144347876799899999999999998647968999749999999969999999799999986999998689
Q ss_pred CHHH
Q ss_conf 9189
Q 000845 1236 DSLF 1239 (1255)
Q Consensus 1236 ~~~f 1239 (1255)
...+
T Consensus 220 ~~~~ 223 (229)
T d3d31a2 220 VEGR 223 (229)
T ss_dssp CTTH
T ss_pred CCHH
T ss_conf 9879
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-44 Score=360.04 Aligned_cols=223 Identities=25% Similarity=0.425 Sum_probs=188.5
Q ss_pred EEEEEEEEEECCCCC--CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899989999579999--4021125897489499999489994899999984258899878999697389999478---64
Q 000845 1004 VEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD---LR 1078 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~--~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~---lR 1078 (1255)
|+++|++++|..+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCC---CCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHH
Q ss_conf 141787168755777-52221566---99999688984059525997624799999631386300007999889249999
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDP---LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1079 ~~i~~VpQ~p~LF~g-TIr~NLdp---~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|++|||+|.+|.. |+++|+.. ....+.++..+ ...++++.+++.+. +| .....||||||||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~--~v~~~L~~vgL~~~-------~~----~~~~~LSGG~~QR 148 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR--RVTELLSLVGLGDK-------HD----SYPSNLSGGQKQR 148 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHH--HHHHHHHHHSTTTT-------TS----SCBSCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCCHH-------HH----CCHHHCCHHHHHH
T ss_conf 16643022522279964999999999984999899999--99999997699035-------54----8943499999989
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHH
Q ss_conf 999999815999399866888999997999999999874--99389986269111311-198999959879897693388
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~L 1231 (1255)
++|||||..+|++|++||||++||+.+...|++.|++.. .+.|+|+|+|++..+.. ||||++|++|+|+|.|+|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99864010589868744655658988856799999999864697899983899999986999999979999998799999
Q ss_pred HHCCCHHH
Q ss_conf 62199189
Q 000845 1232 LRRQDSLF 1239 (1255)
Q Consensus 1232 l~~~~~~f 1239 (1255)
+++|...|
T Consensus 229 ~~~P~~~~ 236 (240)
T d3dhwc1 229 FSHPKTPL 236 (240)
T ss_dssp TCSSCCTT
T ss_pred HHCCCCHH
T ss_conf 72899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-44 Score=361.23 Aligned_cols=223 Identities=22% Similarity=0.329 Sum_probs=188.1
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999478----64
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYD----LR 1078 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~----lR 1078 (1255)
.|+++||+++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEECCCCCCCCC-CHHHHCCCC---CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHH
Q ss_conf 141787168755777-522215669---9999688984059525997624799999631386300007999889249999
Q 000845 1079 SNLGIIPQDPTLFSG-SVRYNLDPL---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL 1154 (1255)
Q Consensus 1079 ~~i~~VpQ~p~LF~g-TIr~NLdp~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1154 (1255)
++|++|||+|.||.. |++||+... ...+.+++.+ ...++++.+++.++. + .....||||||||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~--~v~~~l~~~~l~~~~-------~----~~p~~LSGGqkQR 147 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ--RVREVAELLGLTELL-------N----RKPRELSGGQRQR 147 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH--HHHHHHHHHTCGGGT-------T----CCGGGSCHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCHHHH-------C----CCHHHCCHHHHHH
T ss_conf 55120022122231011667633068772999899999--999999875996676-------2----9933499999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHH
Q ss_conf 999999815999399866888999997999999999874--99389986269111311-198999959879897693388
Q 000845 1155 IGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1155 l~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~L 1231 (1255)
++|||||+.+|+||+|||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|++.|+|+|+
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999982699889825887656989998999999999863698899995999999996999999989999998599999
Q ss_pred HHCCCHHHH
Q ss_conf 621991899
Q 000845 1232 LRRQDSLFA 1240 (1255)
Q Consensus 1232 l~~~~~~f~ 1240 (1255)
+.+|...|-
T Consensus 228 ~~~P~~~~~ 236 (240)
T d1g2912 228 YDKPANTFV 236 (240)
T ss_dssp HHSCSBHHH
T ss_pred HHCCCCHHH
T ss_conf 828999898
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-43 Score=351.07 Aligned_cols=227 Identities=25% Similarity=0.378 Sum_probs=189.5
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 089998999957999940211258974894999994899948999999842588998789996973899994--------
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGL-------- 1074 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~-------- 1074 (1255)
.++++|++++|.. ..||+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCEEECCCCCCCCC-CHHHHCCC----CCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCC
Q ss_conf -----7864141787168755777-52221566----9999968898405952599762479999963138630000799
Q 000845 1075 -----YDLRSNLGIIPQDPTLFSG-SVRYNLDP----LSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDG 1144 (1255)
Q Consensus 1075 -----~~lR~~i~~VpQ~p~LF~g-TIr~NLdp----~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G 1144 (1255)
...|++|++|+|+|.+|.. |+++|+.. ....+.++..+ ...++++.+++.+.... . ..
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~------~----~p 147 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE--RALKYLAKVGIDERAQG------K----YP 147 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH--HHHHHHHHTTCCHHHHT------S----CG
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCCHHHHC------C----CC
T ss_conf 176799974544899833231411010213656578762999899999--99999998299524430------6----82
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEE
Q ss_conf 9889249999999999815999399866888999997999999999874-99389986269111311-198999959879
Q 000845 1145 ANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKL 1222 (1255)
Q Consensus 1145 ~~LSgGQrQrl~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1222 (1255)
.+|||||+||++|||||..+|++|++||||++||+.+...|.+.|++.. .++|+|+|+|++..+.. ||||+||++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCCCHHHH-HHH
Q ss_conf 897693388621991899-999
Q 000845 1223 VEYDEPKKLLRRQDSLFA-QLV 1243 (1255)
Q Consensus 1223 ve~g~~~~Ll~~~~~~f~-~l~ 1243 (1255)
+|.|+|++++++|...|- +++
T Consensus 228 v~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHHHH
T ss_pred EEECCHHHHHHCCCCHHHHHHH
T ss_conf 9984999998389999999988
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-43 Score=352.47 Aligned_cols=214 Identities=20% Similarity=0.358 Sum_probs=176.6
Q ss_pred EEEEEEEEEECCCCC--CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899989999579999--40211258974894999994899948999999842588998789996973899994786----
Q 000845 1004 VEIYDLQIRYRPNAP--LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDL---- 1077 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~--~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~l---- 1077 (1255)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHCCC---C---CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHH
Q ss_conf 4141787168755777-52221566---9---999968898405952599762479999963138630000799988924
Q 000845 1078 RSNLGIIPQDPTLFSG-SVRYNLDP---L---SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMG 1150 (1255)
Q Consensus 1078 R~~i~~VpQ~p~LF~g-TIr~NLdp---~---~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1150 (1255)
|++|++|+|+|.+|.. |++||+.. + +..+.++..+. ....++.+++.+ ......-.+||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~L~~----------~~~~~~p~~LSGG 149 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR--ALECLKMAELEE----------RFANHKPNQLSGG 149 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH--HHHHHHHTTCCG----------GGTTCCGGGSCHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHCHHH----------HHHCCCHHHCCHH
T ss_conf 5557788041241768668887757888722478999999999--999887624234----------5534880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 9999999999815999399866888999997999999999874--99389986269111311198999959879897693
Q 000845 1151 QRQLIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEP 1228 (1255)
Q Consensus 1151 QrQrl~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~ 1228 (1255)
||||++|||||..+|+||++|||||+||+.+...|++.|++.. .++|+|+|||+++....||||++|++|+|++.|++
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 99999987565227888994687654698999999999999998439999998788899986998999989999995257
Q ss_pred H
Q ss_conf 3
Q 000845 1229 K 1229 (1255)
Q Consensus 1229 ~ 1229 (1255)
+
T Consensus 230 r 230 (230)
T d1l2ta_ 230 R 230 (230)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-41 Score=337.98 Aligned_cols=219 Identities=21% Similarity=0.391 Sum_probs=187.1
Q ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 60899989999579999402112589748949999948999489999998425889987899969738999947864141
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNL 1081 (1255)
Q Consensus 1002 g~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i 1081 (1255)
|.|+++|++.+|.. ..||+|+||++++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+.+ ..+.+|+.+
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHHE
T ss_conf 97899958999999--999806256884897999999999999999999966988788879998672446-839887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 787168755777-5222156699---999688984059525997624799999631386300007999889249999999
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLS---QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1082 ~~VpQ~p~LF~g-TIr~NLdp~~---~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
+|+||++.+|.. |++||+..+. ..+..++++ .++.. ++. .+++......-.+||||||||++|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~------~~~~~-----l~~--~~l~~~~~~~~~~lSgG~~qrv~i 144 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE------MVERA-----TEI--AGLGEKIKDRVSTYSKGMVRKLLI 144 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH------HHHHH-----HHH--HCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHH------HHHHH-----HHH--CCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 67500154687866778889899861799899999------99999-----986--797888850453379989899999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 999815999399866888999997999999999874-99389986269111311-1989999598798976933886219
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQ 1235 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll~~~ 1235 (1255)
||||+.+|+||+|||||++||+.+...|++.|++.. .+.|+|+++|+++.+.. ||||++|++|+|++.|+|+++.++.
T Consensus 145 A~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 145 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 99986599988733798897989999999999999965998999959899999969999999899999992899998652
Q ss_pred C
Q ss_conf 9
Q 000845 1236 D 1236 (1255)
Q Consensus 1236 ~ 1236 (1255)
.
T Consensus 225 ~ 225 (238)
T d1vpla_ 225 K 225 (238)
T ss_dssp T
T ss_pred C
T ss_conf 8
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-41 Score=338.83 Aligned_cols=219 Identities=25% Similarity=0.370 Sum_probs=182.5
Q ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 608999899995799994021125897489499999489994899999984258899878999697389999478641-4
Q 000845 1002 GKVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRS-N 1080 (1255)
Q Consensus 1002 g~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~-~ 1080 (1255)
--++++|++++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCCC--CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHH
Q ss_conf 1787168755777-5222156699--999688984059525997624799999631386300007999889249999999
Q 000845 1081 LGIIPQDPTLFSG-SVRYNLDPLS--QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGL 1157 (1255)
Q Consensus 1081 i~~VpQ~p~LF~g-TIr~NLdp~~--~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~l 1157 (1255)
++++||++.+|+. |+++|+.... ....++..+ .++.+ .+....+.+..+ ....+||||||||++|
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~------~~~~~--~~~~~~l~~~~~----~~~~~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR------DLEWI--FSLFPRLKERLK----QLGGTLSGGEQQMLAI 150 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHH------HHHHH--HHHCHHHHTTTT----SBSSSSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH------HHHHH--HHHHHCHHHHHH----CCHHHCCHHHHHHHHH
T ss_conf 35567655457763699999988873278889999------99999--987417688875----8543389999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 999815999399866888999997999999999874-99389986269111311-198999959879897693388621
Q 000845 1158 GRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1158 ARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll~~ 1234 (1255)
||||+.+|++|+|||||++||+.+...+.+.|++.. .++|+|+++|+++.+.. ||||+||++|++++.|+|+++.++
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9999829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.2e-42 Score=344.14 Aligned_cols=180 Identities=30% Similarity=0.446 Sum_probs=166.8
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------------------
Q ss_conf 75449999548970689999841021146508968999926999978999999646888789------------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------------------ 502 (1255)
..+.|+++|++|+|+... .++|+|+||++++|+.++|+|++|||||||+++|+|.++|.+|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCCC-CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 830799998899929999-7635332899859999999999998599999998621688846898788012111066542
Q ss_pred --------------------------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf --------------------------------------------656778889853024687767938999999999970
Q 000845 503 --------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 503 --------------------------------------------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
.++..+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHH
Q ss_conf 39997898076788799989999999995622995899982698941237889999398898813825786211479999
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDL 618 (1255)
Q Consensus 539 ~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~~~~~~~l 618 (1255)
++|+|++||||||+||+.+++.++ +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++.+++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~-~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHH-HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 499889951644458988999999-9998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9974
Q 000845 619 VNAH 622 (1255)
Q Consensus 619 ~~~~ 622 (1255)
++.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-41 Score=337.47 Aligned_cols=226 Identities=19% Similarity=0.284 Sum_probs=181.4
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-C
Q ss_conf 089998999957999940211258974894999994899948999999842588998789996973899994786414-1
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSN-L 1081 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~-i 1081 (1255)
-++++|++.+|.. ..||+||||++++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...++++.++. |
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCCCC---CCH-HHHHH-CCC--CHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHH
Q ss_conf 787168755777-52221566999---996-88984-059--52599762479999963138630000799988924999
Q 000845 1082 GIIPQDPTLFSG-SVRYNLDPLSQ---FTD-QEIWE-VTI--PSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQ 1153 (1255)
Q Consensus 1082 ~~VpQ~p~LF~g-TIr~NLdp~~~---~sd-~ei~~-~~~--~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1153 (1255)
+++||+|.+|.. |++||+..... .+. ..+.. ... .....++ ..+.++. .+++........+|||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~--~~l~~~~~~~~~~LSgG~~Q 157 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK--AFKILEF--LKLSHLYDRKAGELSGGQMK 157 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHH--HHHHHHH--TTCGGGTTSBGGGSCHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHH--HHHHHHH--CCCCHHCCCCHHHCCCHHHH
T ss_conf 7257764247887423214301333034504566542135328999999--9999876--19630205953569918888
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHH
Q ss_conf 9999999815999399866888999997999999999874-99389986269111311-198999959879897693388
Q 000845 1154 LIGLGRVVLRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKL 1231 (1255)
Q Consensus 1154 rl~lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~L 1231 (1255)
|++|||||..+|++|||||||++||+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|++.|+|+|+
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~ 237 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHH
T ss_conf 99999999759272324397656999999999999999997899899994769999986999999969989999668998
Q ss_pred HHC
Q ss_conf 621
Q 000845 1232 LRR 1234 (1255)
Q Consensus 1232 l~~ 1234 (1255)
.++
T Consensus 238 ~~~ 240 (254)
T d1g6ha_ 238 IKN 240 (254)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-41 Score=340.22 Aligned_cols=178 Identities=30% Similarity=0.443 Sum_probs=163.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC---------------------
Q ss_conf 49999548970689999841021146508968999926999978999999646888789---------------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG--------------------- 502 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G--------------------- 502 (1255)
.|+|+|++|+|+.+. +++|+|+||++++|+.++|+|++|||||||+++|+|.+++.+|
T Consensus 1 eI~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTTS-CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 929999999908999-6037424899849999999999999899999999735788888999999994400246553528
Q ss_pred ----------------------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ----------------------------------------6567788898530246877679389999999999703999
Q 000845 503 ----------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 503 ----------------------------------------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
.++..+|.|..|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHH
Q ss_conf 789807678879998999999999562299589998269894123788999939889881382578621-1479999997
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVT-SQEFQDLVNA 621 (1255)
Q Consensus 543 I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~-~~~~~~l~~~ 621 (1255)
|+|||||||+||+.+++.+++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|++++++.. +..|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMR-NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHH-HHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 355647765559899999999-9999858998999978899998499999998999999889999982998789999998
Q ss_pred HH
Q ss_conf 43
Q 000845 622 HK 623 (1255)
Q Consensus 622 ~~ 623 (1255)
+.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred HC
T ss_conf 13
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.3e-42 Score=343.10 Aligned_cols=180 Identities=32% Similarity=0.485 Sum_probs=166.3
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------------------
Q ss_conf 75449999548970689999841021146508968999926999978999999646888789------------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------------------ 502 (1255)
.++.|+++|++|+|+... .++|+|+||++++|++++|+|++|||||||+++|+|.+++.+|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCCC-CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 788799998899959999-7606443899839989999889998099999999712786300015399875307888863
Q ss_pred -------------------------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -------------------------------------------6567788898530246877679389999999999703
Q 000845 503 -------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 503 -------------------------------------------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~ 539 (1255)
.++..+|+|++|.+|++|.+|||||||||+||||+|+
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHH
Q ss_conf 99978980767887999899999999956229958999826989412378899993988988138257862114799999
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLV 619 (1255)
Q Consensus 540 ~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~~~~~~~l~ 619 (1255)
+|+|++||||||+||+++++.++ +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.+++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~-~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 99899983765447977999999-99998753888999968999998599999998999999889999986884999999
Q ss_pred HHH
Q ss_conf 974
Q 000845 620 NAH 622 (1255)
Q Consensus 620 ~~~ 622 (1255)
+.+
T Consensus 251 ~~Q 253 (255)
T d2hyda1 251 SIQ 253 (255)
T ss_dssp TTT
T ss_pred HHC
T ss_conf 974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-42 Score=340.87 Aligned_cols=179 Identities=29% Similarity=0.426 Sum_probs=164.1
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------------------
Q ss_conf 75449999548970689999841021146508968999926999978999999646888789------------------
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------ 502 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------------------ 502 (1255)
-++.|+++|++|+|+..++.++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred --------------------------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf --------------------------------------------656778889853024687767938999999999970
Q 000845 503 --------------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 503 --------------------------------------------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
..+..+|+|.+|.++++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHH
Q ss_conf 399978980767887999899999999956229--958999826989412378899993988988138257862114799
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQ 616 (1255)
Q Consensus 539 ~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~--~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~~~~~~ 616 (1255)
++|+|++||||||+||+++++.+++ .+..+.+ ++|+|+|||+++.+..||+|++|++|+|+++|+++|+++.++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~-~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQ-LLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHH-HHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 6870787167576568536899999-999976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000845 617 DLVN 620 (1255)
Q Consensus 617 ~l~~ 620 (1255)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.3e-40 Score=331.52 Aligned_cols=220 Identities=24% Similarity=0.374 Sum_probs=179.7
Q ss_pred EEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999957999940211258974894999994899948999999842588998789996973899994786414178
Q 000845 1004 VEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGI 1083 (1255)
Q Consensus 1004 I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1083 (1255)
+++ ++.-+|.. ..+ |+||+++ +|.+||+||||||||||+++|.|+++|++|+|.++|.|+..++.. |++|+|
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCCC-CCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7168755777-522215669-99996889840595259976247999996313863000079998892499999999998
Q 000845 1084 IPQDPTLFSG-SVRYNLDPL-SQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVV 1161 (1255)
Q Consensus 1084 VpQ~p~LF~g-TIr~NLdp~-~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAl 1161 (1255)
|||+|.+|+. |++||+... ...+..+.++ ...++++.+++.++ .......||||||||++|||||
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~--~v~~~l~~~gl~~~-----------~~~~~~~LSGG~kQRvaiAral 141 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDR--RVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH--HHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHH
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHH--HHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHH
T ss_conf 5231443522015576665323367788999--99999986383756-----------6579444899998999998777
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCHH
Q ss_conf 15999399866888999997999999999874--99389986269111311-1989999598798976933886219918
Q 000845 1162 LRRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKKLLRRQDSL 1238 (1255)
Q Consensus 1162 L~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~Ll~~~~~~ 1238 (1255)
+.+|+||+||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++.++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~ 221 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHH
T ss_conf 51677067528655588799999999999998743976999818999999969999999899999990699983299889
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000845 1239 FAQLVK 1244 (1255)
Q Consensus 1239 f~~l~~ 1244 (1255)
.++++.
T Consensus 222 v~~fl~ 227 (240)
T d2onka1 222 VAEFLS 227 (240)
T ss_dssp HHHHGG
T ss_pred HHHHHC
T ss_conf 999857
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3e-41 Score=336.41 Aligned_cols=175 Identities=26% Similarity=0.480 Sum_probs=162.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC----------------------
Q ss_conf 9999548970689999841021146508968999926999978999999646888789----------------------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG---------------------- 502 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G---------------------- 502 (1255)
++++|++|+|+.. +++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred ----------------------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ----------------------------------------6567788898530246877679389999999999703999
Q 000845 503 ----------------------------------------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 503 ----------------------------------------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
.++..+|+|.+|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
Q ss_conf 78980767887999899999999956229958999826989412378899993988988138257862114799999974
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVNAH 622 (1255)
Q Consensus 543 I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~~~~~~~l~~~~ 622 (1255)
|+|||||||+||+++++.++ +.+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++..++.|.++++.+
T Consensus 160 ililDEpts~LD~~~~~~i~-~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQ-KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHH-HHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 99965886556988999998-87888717998999978799998499999998999999999999986896999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-38 Score=316.50 Aligned_cols=162 Identities=41% Similarity=0.642 Sum_probs=150.8
Q ss_pred CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------------------------------------
Q ss_conf 99841021146508968999926999978999999646888789------------------------------------
Q 000845 459 LNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------------------------------------ 502 (1255)
Q Consensus 459 ~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------------------------------------ 502 (1255)
.+|+|+|+||++++|++++|+|++|||||||+++|+|++++.+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 127 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYR 127 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 97677375999859999999989998299999999579747882899999999981643026760321420333456057
Q ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf -----------656778889853024687767938999999999970399978980767887999899999999956229
Q 000845 503 -----------MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS 571 (1255)
Q Consensus 503 -----------~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~ 571 (1255)
.|+..+|+++.|.+|++|.+|||||||||+||||++++|+|+|||||||+||+.+.+.+++.++..+.+
T Consensus 128 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~ 207 (281)
T d1r0wa_ 128 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207 (281)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997769999846123323555542377999999999999998696351333855448989999999999988628
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHH
Q ss_conf 9589998269894123788999939889881382578621147999999
Q 000845 572 KKTVLLVTHQVDFLPAFDSILLISGGEIIQAATYDHLLVTSQEFQDLVN 620 (1255)
Q Consensus 572 ~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~~el~~~~~~~~~l~~ 620 (1255)
++|+|+|||+++.+..||+|++|++|+|++.|+++|++...++|...+.
T Consensus 208 ~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 208 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp TSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 9999999252899985999999989999998789999605948999872
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.8e-37 Score=302.22 Aligned_cols=209 Identities=21% Similarity=0.291 Sum_probs=177.4
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999478641417
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
-++++||+.+| +|+||||+|++||.+||+|+||||||||+++|.|+. |.+|+|.++|.|+...+...++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCCCC-CCCH-HHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 8716875-57775222156699-9996-8898405952599762479999963138630000799988924999999999
Q 000845 1083 IIPQDPT-LFSGSVRYNLDPLS-QFTD-QEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGR 1159 (1255)
Q Consensus 1083 ~VpQ~p~-LF~gTIr~NLdp~~-~~sd-~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lAR 1159 (1255)
+++|+.. .|..++.+|+.... +... +.+.+ +++.+++ +..++....+||||||||++|||
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLND------VAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAA 138 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHH------HHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH------HHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 451213577442098876410014668999999------9986598-----------76767684456998899999999
Q ss_pred HHCC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHH
Q ss_conf 9815-------999399866888999997999999999874-99389986269111311-19899995987989769338
Q 000845 1160 VVLR-------RRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMD-CNMVLSMSDGKLVEYDEPKK 1230 (1255)
Q Consensus 1160 AlL~-------~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~g~~~~ 1230 (1255)
|+++ +|+|++|||||++||..+...+.+.|++.. .++|+|+++|+++.+.. ||||++|++|++++.|+|+|
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 99851713389988999718777789899999999999998679999999677999999799999997998999889999
Q ss_pred HHHCC
Q ss_conf 86219
Q 000845 1231 LLRRQ 1235 (1255)
Q Consensus 1231 Ll~~~ 1235 (1255)
+++++
T Consensus 219 v~~~~ 223 (231)
T d1l7vc_ 219 VLTPP 223 (231)
T ss_dssp HSCHH
T ss_pred HHCCH
T ss_conf 81886
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-34 Score=283.15 Aligned_cols=190 Identities=26% Similarity=0.430 Sum_probs=157.5
Q ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 08999899995799994021125897489499999489994899999984258899878999697389999478641417
Q 000845 1003 KVEIYDLQIRYRPNAPLVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLG 1082 (1255)
Q Consensus 1003 ~I~~~nvsf~Y~~~~~~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~ 1082 (1255)
.|+++|++++|. . +||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. .+|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCEE
T ss_conf 599998999939--9-2884208898599899999999971999999996620567788999989626-----7367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----CC-CCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 87168755777-52221566----99-99968898405952599762479999963138630000799988924999999
Q 000845 1083 IIPQDPTLFSG-SVRYNLDP----LS-QFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIG 1156 (1255)
Q Consensus 1083 ~VpQ~p~LF~g-TIr~NLdp----~~-~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~ 1156 (1255)
++||++.++.. |+++|+.. ++ ..+++++++ +++..++.+ ++..+ .+||||||||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~------~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ 135 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD------ALESVEVLD--------LKKKL----GELSQGTIRRVQ 135 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHH------HHHHTTCCC--------TTSBG----GGSCHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH------HHHHCCCCC--------CCCCC----CCCCCCHHHHHH
T ss_conf 995013578882899999999975488637999999------998748856--------30126----868971888899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 999981599939986688899999799999999987499389986269111311198999959
Q 000845 1157 LGRVVLRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLSMSD 1219 (1255)
Q Consensus 1157 lARAlL~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1219 (1255)
||||++++|+++||||||++||.++...+.+.|.+..+++++++|+|+. .+..||++.+|.+
T Consensus 136 ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 136 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 9998864998999868620169999999999999998679999999916-2544161234010
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.97 E-value=1.2e-30 Score=253.19 Aligned_cols=164 Identities=26% Similarity=0.327 Sum_probs=137.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCC----------
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------65677----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKM---------- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~---------- 507 (1255)
.|+++|++++|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+.|++| .|+..
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred ------CCCC-----CCC----------------------------------CCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf ------8889-----853----------------------------------0246877679389999999999703999
Q 000845 508 ------LPFG-----DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 508 ------lp~G-----d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
.++. +.| ........||||||||++||||+..+|+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~ 159 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 25512002212223101166763306877299989999999999987599667629933499999999999999826998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 7898076788799989999999995622-9-958999826989412-3788999939889881382578621
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 543 I~LLDdp~SalD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
|++|||||++||+.+...+. +.+..+. + |.|+|++||+++... .||+|++|++|+|++.|+.+|+..+
T Consensus 160 iLllDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 160 VFLMDEPLSNLDAKLRVRMR-AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp EEEEECTTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 89825887656989998999-999999863698899995999999996999999989999998599999828
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.2e-31 Score=257.63 Aligned_cols=163 Identities=27% Similarity=0.395 Sum_probs=136.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCCCCC------
Q ss_conf 9999548970689999841021146508968999926999978999999646888789------6567788898------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGD------ 512 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp~Gd------ 512 (1255)
|+++|++++|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+++++| .|+..++...
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ---------C----------------------------------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf ---------5----------------------------------302468776793899999999997039997898076
Q 000845 513 ---------L----------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 513 ---------~----------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
. .........||||||||++||||+..+|++++||||
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP 157 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEEST
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 33420264333788978999875998899999999999757886566489656999999999999997039988997588
Q ss_pred CCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 788799989999999995622--9958999826989412-3788999939889881382578621
Q 000845 550 FSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 550 ~SalD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
||+||+.+.+.++ +.+..+. .++|+|++||+++... .||+|++|++|+|++.|+.+++...
T Consensus 158 ts~LD~~~~~~i~-~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 158 LSNLDAALRVQMR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TTTSCHHHHHHHH-HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 8788988998999-999999874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=5.8e-31 Score=255.59 Aligned_cols=164 Identities=27% Similarity=0.391 Sum_probs=138.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCCCCCC----
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------65677888985----
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGDL---- 513 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp~Gd~---- 513 (1255)
.|+++|.+++|+. ..+|+|+||++++||+++++||+|||||||+++|.|.++|.+| .|+..++....
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ---------------------------------------------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---------------------------------------------30246877679389999999999703999789807
Q 000845 514 ---------------------------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 514 ---------------------------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDd 548 (1255)
.........||||||||++||||+..+|+|++|||
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE 162 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 162 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 80033534222099999999987399999999999999987598556609954699999889999766404998243068
Q ss_pred CCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 6788799989999999995622--995899982698941-23788999939889881382578621
Q 000845 549 PFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 549 p~SalD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
|||+||+.+.+.++ +.+..+. .|+|+|+|||+++.. ..||+|++|++|+|++.|+.+++..+
T Consensus 163 Pts~LD~~~~~~i~-~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 163 PLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp TTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 86668989998999-999999873198079994899999986999999989999998599999868
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=3.6e-31 Score=257.19 Aligned_cols=160 Identities=30% Similarity=0.437 Sum_probs=130.5
Q ss_pred EEEEEEEEEECCCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------C--------------
Q ss_conf 999954897068999-9841021146508968999926999978999999646888789------6--------------
Q 000845 445 IFIKSADLSWEADLL-NPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------M-------------- 503 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~-~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~-------------- 503 (1255)
|+++|++++|+.... ..+|+|+||++++||+++|+|++|||||||+++|.|..+|++| .
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred ---------CCCCCCC-----------------C-C-----------------CC-CCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf ---------5677888-----------------9-8-----------------53-024687767938999999999970
Q 000845 504 ---------DLKMLPF-----------------G-D-----------------LT-QIGERGVNLSGGQKQRIQLARALY 538 (1255)
Q Consensus 504 ---------Dl~~lp~-----------------G-d-----------------~T-~iGe~G~~LSGGQkqRIaLARAly 538 (1255)
|...+|. + + .. .....-.+|||||||||+||||+.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~ 161 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA 161 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880238999999999875652
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCH
Q ss_conf 39997898076788799989999999995622--99589998269894123788999939889881382
Q 000845 539 QDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLPAFDSILLISGGEIIQAATY 605 (1255)
Q Consensus 539 ~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l~~aD~Iivl~~G~i~~~Gt~ 605 (1255)
.+|++++||||||+||+.+.+.++ +.+..+. .++|+|+|||+++....||+|++|++|+|++.|..
T Consensus 162 ~~P~lLllDEPTs~LD~~~~~~i~-~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 162 NNPPIILADQPTGALDSKTGEKIM-QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 278889946876546989999999-99999998439999998788899986998999989999995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.4e-30 Score=252.63 Aligned_cols=165 Identities=31% Similarity=0.438 Sum_probs=135.9
Q ss_pred EEEEEEEEEECCCCCC-CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCCCC------
Q ss_conf 9999548970689999-841021146508968999926999978999999646888789------656778889------
Q 000845 445 IFIKSADLSWEADLLN-PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFG------ 511 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~-~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp~G------ 511 (1255)
|+++|++++|+.+... .+|+|+||++++||+++|+|++|||||||+++|.|..+|++| .|+..++..
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred --------------CCC----------------------------------CCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf --------------853----------------------------------02468776793899999999997039997
Q 000845 512 --------------DLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 512 --------------d~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~I 543 (1255)
..| ........||||||||++||||+..+|++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~l 161 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHCCCCCE
T ss_conf 16643022522279964999999999984999899999999999976990355489434999999899986401058986
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 898076788799989999999995622--9958999826989412-378899993988988138257862
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 544 ~LLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~ 610 (1255)
+||||||++||+.+.+.++ +.+..+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+.+++..
T Consensus 162 LllDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 162 LLCDEATSALDPATTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp EEEESGGGSSCHHHHHHHH-HHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred EEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 8744655658988856799-99999986469789998389999998699999997999999879999972
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.97 E-value=1.7e-30 Score=251.89 Aligned_cols=162 Identities=35% Similarity=0.466 Sum_probs=135.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCC----------
Q ss_conf 9999548970689999841021146508968999926999978999999646888789------656778----------
Q 000845 445 IFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML---------- 508 (1255)
Q Consensus 445 i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~l---------- 508 (1255)
|+++|.+++|+. .+|+|+||++++||+++++||+|||||||+++|.|.++|.+| .|+..+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred -------CC-----------------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf -------88-----------------------------985302468776793899999999997039997898076788
Q 000845 509 -------PF-----------------------------GDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA 552 (1255)
Q Consensus 509 -------p~-----------------------------Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~Sa 552 (1255)
|+ |-..........||||||||++||||+..+|+++|||||||+
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~ 157 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCCC
T ss_conf 12111174665778888877640553899999999982565557589554799984014030434436771443478767
Q ss_pred CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 799989999999995622--9958999826989412-3788999939889881382578621
Q 000845 553 LDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 553 lD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
||+.+...++ +.+..+. .+.|+|++||+++... .||+|++|++|++++.|+.+++..+
T Consensus 158 LD~~~~~~i~-~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 158 LDPRTQENAR-EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCHHHHHHHH-HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCHHHHHHHH-HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9989999999-999999864796899974999999996999999979999998699999868
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=4.3e-30 Score=248.71 Aligned_cols=173 Identities=25% Similarity=0.432 Sum_probs=140.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCCCCC-----
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------6567788898-----
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLPFGD----- 512 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp~Gd----- 512 (1255)
.++++|.+++|+. .++|+|+||++++||+++|+|++|||||||+++|.|..++++| .|+..++..+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -------------------------CCC-----------------------------------C-CCCCCCCCHHHHHHH
Q ss_conf -------------------------530-----------------------------------2-468776793899999
Q 000845 513 -------------------------LTQ-----------------------------------I-GERGVNLSGGQKQRI 531 (1255)
Q Consensus 513 -------------------------~T~-----------------------------------i-Ge~G~~LSGGQkqRI 531 (1255)
.|. . ......||||||||+
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHH
T ss_conf 51767999745448998332314110102136565787629998999999999999829952443068220567788898
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999703999789807678879998999999999562-29958999826989412-37889999398898813825786
Q 000845 532 QLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLL 609 (1255)
Q Consensus 532 aLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~ 609 (1255)
+||||+..+|++++|||||++||+.+.+.|++ .+..+ .+|+|+|+|||+++.+. .||+|++|.+|+|++.|+.+++.
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999843998788524555688788889987-65541036883389948999999869999999799999984999998
Q ss_pred HC-CHH-HHHHHH
Q ss_conf 21-147-999999
Q 000845 610 VT-SQE-FQDLVN 620 (1255)
Q Consensus 610 ~~-~~~-~~~l~~ 620 (1255)
.+ ... ..+++.
T Consensus 238 ~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 238 GNPQSPRLQQFLK 250 (258)
T ss_dssp HSCCSHHHHHHHH
T ss_pred HCCCCHHHHHHHH
T ss_conf 3899999999881
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.97 E-value=2.4e-30 Score=250.76 Aligned_cols=166 Identities=29% Similarity=0.405 Sum_probs=137.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCC------------
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------656------------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL------------ 505 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl------------ 505 (1255)
.|+++|++.+|+.. +..+|+|+||++++||+++|+||+|||||||+++|.|..+|.+| .|+
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred ----------CCCCC--------------------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf ----------77888--------------------------------985302468776793899999999997039997
Q 000845 506 ----------KMLPF--------------------------------GDLTQIGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 506 ----------~~lp~--------------------------------Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I 543 (1255)
..+|. |-..........||||||||++||||+..+|++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l 161 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 45147730433466665777766556761379999999999998665917666489545999998589987577604661
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 898076788799989999999995622--995899982698941-23788999939889881382578621
Q 000845 544 YLLDDPFSALDAKTAKFLFTEYVMGAL--SKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 544 ~LLDdp~SalD~~~~~~i~~~~i~~~l--~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
+|+|||||+||+.+...+. +.+..+. .+.|+|+|||+++.. ..||+|++|++|+|++.|+.+++...
T Consensus 162 lllDEPt~~LD~~~~~~i~-~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 162 LLLDEPFSNLDARMRDSAR-ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp EEEESTTTTSCGGGHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 4544786679989988998-999999863598799997999999996999999989999998699999868
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=2.3e-29 Score=242.93 Aligned_cols=163 Identities=22% Similarity=0.331 Sum_probs=135.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCC-----------
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------6567-----------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK----------- 506 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~----------- 506 (1255)
.++++|.+.+|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+++.+| .|+.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred --CCCC----------------------------------------------------CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --7888----------------------------------------------------9853024687767938999999
Q 000845 507 --MLPF----------------------------------------------------GDLTQIGERGVNLSGGQKQRIQ 532 (1255)
Q Consensus 507 --~lp~----------------------------------------------------Gd~T~iGe~G~~LSGGQkqRIa 532 (1255)
..|+ |-.........+||||||||++
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~ 160 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 160 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHCCCHHHHHHH
T ss_conf 87257764247887423214301333034504566542135328999999999987619630205953569918888999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999703999789807678879998999999999562-2995899982698941-2378899993988988138257862
Q 000845 533 LARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 533 LARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~Gt~~el~~ 610 (1255)
||||+..+|++++|||||++||+...+.+++ .+..+ .+|+|+|++||+++.+ ..||+|++|++|+|+..|+.+|+..
T Consensus 161 iAraL~~~P~llilDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHHHCCCCHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 9999975927232439765699999999999-999999789989999476999998699999996998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.97 E-value=2.1e-30 Score=251.18 Aligned_cols=167 Identities=25% Similarity=0.354 Sum_probs=139.2
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCC-----
Q ss_conf 75449999548970689999841021146508968999926999978999999646888789------6567788-----
Q 000845 441 LEHSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLP----- 509 (1255)
Q Consensus 441 ~~~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp----- 509 (1255)
.+..++++|.+++|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+++.+| .|+...|
T Consensus 3 sd~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CCEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 5607999618999899---8888302578889979999999998599999999678888803898424434466088888
Q ss_pred --------C-----CCCC----------------------------------CCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf --------8-----9853----------------------------------0246877679389999999999703999
Q 000845 510 --------F-----GDLT----------------------------------QIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 510 --------~-----Gd~T----------------------------------~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
+ .+.| .......+||||||||++||||+..+|+
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 74235567655457763699999988873278889999999999874176888758543389999999999999982998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 789807678879998999999999562-2995899982698941-23788999939889881382578621
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 543 I~LLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
+++|||||++||+...+.+++ .+..+ .+|+|+|++||+++.+ ..||+|++|++|++++.|+.+++...
T Consensus 160 lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=2.4e-29 Score=242.86 Aligned_cols=164 Identities=27% Similarity=0.369 Sum_probs=138.5
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCC-----------
Q ss_conf 449999548970689999841021146508968999926999978999999646888789------656-----------
Q 000845 443 HSIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDL----------- 505 (1255)
Q Consensus 443 ~~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl----------- 505 (1255)
++|+++|.+.+|.. .++|+|+||++++||+++++||+|||||||+++|.|.++|.+| .|+
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred CCCCCCC---------------------------------------CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7788898---------------------------------------5302468776793899999999997039997898
Q 000845 506 KMLPFGD---------------------------------------LTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 506 ~~lp~Gd---------------------------------------~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
...|+.. ......+..+||||||||++||||+..+|+|++|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL 157 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 157 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67500154687866778889899861799899999999999867978888504533799898999999998659998873
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 076788799989999999995622-9958999826989412-378899993988988138257862
Q 000845 547 DDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLV 610 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i~~~~i~~~l-~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~ 610 (1255)
||||++||+...+.++ +.+..+. .|+|+|++||+++.+. .||+|++|++|+++..|+.+++..
T Consensus 158 DEPt~gLD~~~~~~i~-~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 158 DEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp ESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 3798897989999999-9999999659989999598999999699999998999999928999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=1.7e-27 Score=228.36 Aligned_cols=148 Identities=32% Similarity=0.464 Sum_probs=120.2
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCCC----------CC-----CC------
Q ss_conf 841021146508968999926999978999999646888789------6567788----------89-----85------
Q 000845 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKMLP----------FG-----DL------ 513 (1255)
Q Consensus 461 ~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~lp----------~G-----d~------ 513 (1255)
..+ |+||++. +++++++||+|||||||+++|.|.++|.+| .|+..++ +. ..
T Consensus 14 ~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 14 FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 999-9999749-97999997999809999999973999896289999999886998992852252314435220155766
Q ss_pred --------------------------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf --------------------------302468776793899999999997039997898076788799989999999995
Q 000845 514 --------------------------TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVM 567 (1255)
Q Consensus 514 --------------------------T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~ 567 (1255)
.........||||||||++||||+..+|++++||||||+||+++.+.++ +.+.
T Consensus 92 ~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~-~~i~ 170 (240)
T d2onka1 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM-EELR 170 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH-HHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH-HHHH
T ss_conf 653233677889999999998638375665794448999989999987775167706752865558879999999-9999
Q ss_pred HHC--CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 622--9958999826989412-3788999939889881382578621
Q 000845 568 GAL--SKKTVLLVTHQVDFLP-AFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 568 ~~l--~~kTvIlvTH~~~~l~-~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
.+. .+.|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 171 ~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 171 FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 99874397699981899999996999999989999999069998329
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1.4e-21 Score=181.67 Aligned_cols=306 Identities=8% Similarity=0.058 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998888999999999999999999999999999722676303579999999999999999999999999999999999
Q 000845 121 LISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIFKYEIYSLAISLFLVKCVESLAGRHWFFQSRLTGLKIR 200 (1255)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 200 (1255)
..+.+|+.++++.++.++..++....|++++.++|....+.. ....+.+++.++++.++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-RSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999999999999998744687-7899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999984399112146895489999997899997578899-9999999999999999998976999999999999
Q 000845 201 SSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPFWF-HQIWSTSLQLCIAVVVVYYSVGLATIATLIVMIL 279 (1255)
Q Consensus 201 ~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~~~-~~~~~~pl~i~i~~~~l~~~lg~~~l~gl~~~~~ 279 (1255)
..+...+|+|.++.+....++.++|++++.++.|++.+.+..... .......+.++++++.++..-...+++.++++++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999994359999858239999999999999999999999999999999989
Q 000845 280 TVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGYYMVLFWS 359 (1255)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~Ik~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~ 359 (1255)
...+.....++..+..++..+..++..+...|.++|+++||.+++|+.+.++..+..++..+...+..............
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9899--9999999998828987977999999999999999999999999999999999999998269999
Q 000845 360 SPIL--IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPEL 427 (1255)
Q Consensus 360 ~p~~--v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 427 (1255)
...+ +..+.++.+....+.+++|.+++.+.+...+..|+..++..+..+.++.+|.+|+.++|+.|+.
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0000237999999999980997899999999999999999999999999999999999999999669989
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.4e-27 Score=225.97 Aligned_cols=159 Identities=26% Similarity=0.433 Sum_probs=128.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCCCC---------
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------656778---------
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLKML--------- 508 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~~l--------- 508 (1255)
.++++|++.+ ..|+++||++++||+++++|++|||||||+++|.|.. +.+| .|+..+
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred ---------CC----------------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------CCCEE
Q ss_conf ---------88----------------------------98530246877679389999999999703-------99978
Q 000845 509 ---------PF----------------------------GDLTQIGERGVNLSGGQKQRIQLARALYQ-------DRDIY 544 (1255)
Q Consensus 509 ---------p~----------------------------Gd~T~iGe~G~~LSGGQkqRIaLARAly~-------~~~I~ 544 (1255)
+. +-...++.+..+||||||||++||||+++ +|+|+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ll 154 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 154 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 24512135774420988764100146689999999986598767676844569988999999999985171338998899
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9807678879998999999999562-2995899982698941-23788999939889881382578621
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGA-LSKKTVLLVTHQVDFL-PAFDSILLISGGEIIQAATYDHLLVT 611 (1255)
Q Consensus 545 LLDdp~SalD~~~~~~i~~~~i~~~-l~~kTvIlvTH~~~~l-~~aD~Iivl~~G~i~~~Gt~~el~~~ 611 (1255)
||||||++||+...+.+ .+.+..+ .+|+|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 155 llDEPt~gLD~~~~~~i-~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 155 LLDEPMNSLDVAQQSAL-DKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp EESSCSTTCCHHHHHHH-HHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred EECCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 97187777898999999-999999986799999996779999997999999979989998899998188
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=1.9e-21 Score=180.81 Aligned_cols=307 Identities=15% Similarity=0.155 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-H---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999888899999999999999999999999999972267630-3---57--999999999999999999999999999
Q 000845 120 ALISCHWKSILFSGFFALIKVISISAGPLFLKAFISAAEGEIIF-K---YE--IYSLAISLFLVKCVESLAGRHWFFQSR 193 (1255)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~li~~~~~~~~~-~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1255)
...+.||+.++...++.++..++....|++++.++|.+...... . .. .+.+++++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999843991121468954899999978999975788-99999999999999999999897699999
Q 000845 194 LTGLKIRSSLCAAISSKQLRLSNAAKMMHTSGDIVNYVTVDAYRIGEFPF-WFHQIWSTSLQLCIAVVVVYYSVGLATIA 272 (1255)
Q Consensus 194 ~~~~~~r~~l~~~iy~K~l~l~~~~~~~~~~g~i~nl~s~D~~~i~~~~~-~~~~~~~~pl~i~i~~~~l~~~lg~~~l~ 272 (1255)
+.+.+++..++..+|+|.++++....++.++|++.+.++.|++.+.+... .+...+...+.++++++.+++.-.+.+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999435999985823999999999999999999999999999
Q 000845 273 TLIVMILTVLGNSPLAKLQHKYQETFMTAQNKRLKAITEVLVNMKVLKLYAWDSYFKNVIEKLRSEEYGWLKVLQLQKGY 352 (1255)
Q Consensus 273 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~Ik~IK~~~wE~~~~~~i~~~R~~E~~~l~~~~~~~~~ 352 (1255)
.++++++.......+.++..+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999899899--999999999882898797799999999999999999999999999999999999999826999
Q 000845 353 YMVLFWSSPIL--IGAATLLTCYFLGIPLNPSNVFTFLATLRILQEPIRLLPDVFGAFIEAKVSLDRIANFLEAPE 426 (1255)
Q Consensus 353 ~~~~~~~~p~~--v~~~~f~~~~~~~~~L~~~~vft~l~l~~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 426 (1255)
..........+ +....++.+....+.+++|.+++.+.++..+..|+..++..+..+.++.+|++||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.6e-20 Score=173.48 Aligned_cols=309 Identities=13% Similarity=0.132 Sum_probs=248.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 548998731342378999999999999999999999965158888--880---378999999999999999999999999
Q 000845 675 KPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIPSTS--ISR---LKLVIVYSGIGIGMMFLLLTRSFLVVY 749 (1255)
Q Consensus 675 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~ 749 (1255)
+.+++|++..++.+. +.+++.++..+.....++.+...++... .+. ..+...+.++.++..++.+.+.+....
T Consensus 5 krl~~~~~~~k~~l~--~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKAGLI--VAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999--999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998449843201334430388771014686567689899999999999999999998868999999
Q 000845 750 LGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALTWQVLLVI 829 (1255)
Q Consensus 750 ~~~~~s~~l~~~l~~~il~~p~~ff~~~~~G~il~r~s~D~~~id~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1255)
.+.+...+++.++++++++.|+.||++++.|++++|+++|++.+...+...+...+...+.+++.+++++..+|.+++++
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999997842199999999970369999717299999999999999999999999998999
Q 000845 830 VPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHSFTAREWL 909 (1255)
Q Consensus 830 i~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 909 (1255)
+..+++...+...+.+..++..+...+..+...+.+.|.+.|+.+||+|+.|+.+.+++.+..+...+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999999-9873258665879999999999999999999999999964564999999984299989
Q 000845 910 IQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRIPSEA 985 (1255)
Q Consensus 910 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~l~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~ 985 (1255)
......+..+...++.++ ......|.++.|.+...+.+...+..++..+...+..+.+.+.|.+|+.++++.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=1e-25 Score=214.29 Aligned_cols=147 Identities=24% Similarity=0.448 Sum_probs=111.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC------CCCC-------C---
Q ss_conf 49999548970689999841021146508968999926999978999999646888789------6567-------7---
Q 000845 444 SIFIKSADLSWEADLLNPTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG------MDLK-------M--- 507 (1255)
Q Consensus 444 ~i~~~~~~f~w~~~~~~~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G------~Dl~-------~--- 507 (1255)
.++++|.+++|+ +++|+|+||++++|++++|+||+|||||||+++|.|.++|.+| .++. .
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred ---CCC------------------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf ---888------------------------------98530246877679389999999999703999789807678879
Q 000845 508 ---LPF------------------------------GDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554 (1255)
Q Consensus 508 ---lp~------------------------------Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD 554 (1255)
+|. -+...+.++-.+||||||||++||||++++|+++||||||++||
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD 157 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 157 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 13578882899999999975488637999999998748856301268689718888999998864998999868620169
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 998999999999562299589998269894123788999939
Q 000845 555 AKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILLISG 596 (1255)
Q Consensus 555 ~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iivl~~ 596 (1255)
+.+.+.+++. +..+.+++++++++|+ +.+..||.+.+|.+
T Consensus 158 ~~~~~~i~~~-l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 158 EDSKHKVLKS-ILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp TTTHHHHHHH-HHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred HHHHHHHHHH-HHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 9999999999-9999867999999991-62544161234010
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=9.1e-21 Score=175.41 Aligned_cols=308 Identities=16% Similarity=0.137 Sum_probs=238.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCH---HHHH-----HHHHHHHHHHHHHHHH
Q ss_conf 548998731342378999999999999999999999965158----888880---3789-----9999999999999999
Q 000845 675 KPYIDYLSHKKGFLYFTLSTFAYLIFLVAQILQSLWIATYIP----STSISR---LKLV-----IVYSGIGIGMMFLLLT 742 (1255)
Q Consensus 675 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~---~~~~-----~~~~~l~~~~~~~~~~ 742 (1255)
+.+++|++..++... ..+++.++..+.....++.+++..+ +..... .... ..+.++.++..++.+.
T Consensus 3 Krl~~~~k~~k~~~~--~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKYRIF--ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHHHHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999--999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999844984320133443038877101468656768989999999999999999999886
Q 000845 743 RSFLVVYLGLEASESIFYKLMSSLFRAPMAFYDSTPVGRILSRVSSDLSIIDLDLSIKSTIAVGTTMAVISTFVVLGALT 822 (1255)
Q Consensus 743 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ff~~~~~G~il~r~s~D~~~id~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 822 (1255)
+.+...+.+.+...+++.++++++++.|++||+++++|++++|+++|+..++..+...+...+..++.+++.++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999784219999999997036999971729999999999999999999999
Q 000845 823 WQVLLVIVPMIYLIIVLQNYYFATAKELMRINGTRSSLLASHLAETVAGAMTIRAFQNEERFFAKNLDLIDAYASSFFHS 902 (1255)
Q Consensus 823 ~~~~~~~i~~~~~~~~i~~~~~~~~r~l~~~~~~~~s~~~~~~~e~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1255)
|.++++.++..++...+...+.+..++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9998999999999999999999999-987325866587999999999999999999999999996456499999998429
Q 000845 903 FTAREWLIQRLETLSAIVLATSALC-TTLLHKGHKGAGYTGMALSFGLSLNDFLVYSVNNQCIVGNLIVSVERLNQYMRI 981 (1255)
Q Consensus 903 ~~~~~w~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~l~~~l~~~~~~~~~~~~~~~s~~Ri~~~~~~ 981 (1255)
.....+.......+..+.......+ ......|.+++|.+...+.+...+..++..+...+..+...+.|.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 998
Q 000845 982 PSE 984 (1255)
Q Consensus 982 ~~e 984 (1255)
++|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=1.5e-15 Score=134.44 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=118.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999489994899999984258899878999697389999478641417871687557775222156699999688984
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE 1112 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr~NLdp~~~~sd~ei~~ 1112 (1255)
|++|+||+|||||||++.+.+++++..|.+.+++.+....+...........++.+.++..+...+....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVG---------- 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEET----------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554430----------
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHH
Q ss_conf 059525997624799999631386300007999889249999999999815999399866888999--997999999999
Q 000845 1113 VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASID--NATDSILQNTIR 1190 (1255)
Q Consensus 1113 ~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDEaTS~lD--~~te~~I~~~l~ 1190 (1255)
+. +.+... ..+++|++|+.++++++.++|+++++||++...+ .+....+.+.++
T Consensus 72 ---------~~-----------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 ---------SY-----------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ---------TE-----------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ---------HH-----------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf ---------23-----------037625----665320137899999974099742302777310045799999998750
Q ss_pred HHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 874993899862691113111989999598798976933886219918999999
Q 000845 1191 REFANCTVITVAHRIATVMDCNMVLSMSDGKLVEYDEPKKLLRRQDSLFAQLVK 1244 (1255)
Q Consensus 1191 ~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~g~~~~Ll~~~~~~f~~l~~ 1244 (1255)
. .++|+|.++|+......||++..+++|++++.+.. +.+..+...++
T Consensus 128 ~--~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 128 D--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred C--CCCEEEEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHH
T ss_conf 5--79789999744778986365998719999998996-----47889999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=4.5e-11 Score=99.14 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 8892499999999998----15999399866888999997999999999874-993899862691113111989999
Q 000845 1146 NWSMGQRQLIGLGRVV----LRRRQILVLDEATASIDNATDSILQNTIRREF-ANCTVITVAHRIATVMDCNMVLSM 1217 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAl----L~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl 1217 (1255)
.+|||||.++++|-.+ ..++||++||||+++||+.+...+.+.|++.. .++-+|+|||++.....+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=1.7e-10 Score=94.72 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHH--H--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 679389999999999--7--039997898076788799989999999995622-995899982698941237889999
Q 000845 522 NLSGGQKQRIQLARA--L--YQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLPAFDSILLI 594 (1255)
Q Consensus 522 ~LSGGQkqRIaLARA--l--y~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l-~~kTvIlvTH~~~~l~~aD~Iivl 594 (1255)
.||||||.+++||-. + +.++++++||||.++||+.....+. +.+.... .+.-+|++||+++.+..||++|..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~-~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 322304799999999999547999779996887778999999999-99999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.20 E-value=2.8e-12 Score=108.70 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=91.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC-----------------CCCCCC----------CC-----CCCCCCCCCCC
Q ss_conf 89999269999789999996468887896-----------------567788----------89-----85302468776
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGM-----------------DLKMLP----------FG-----DLTQIGERGVN 522 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~-----------------Dl~~lp----------~G-----d~T~iGe~G~~ 522 (1255)
.++|+||+|||||||++.|+|++++..|. .+..+. .. +...+...-..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303762566
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEEEEEECCEEE
Q ss_conf 7938999999999970399978980767887999899999999956229--95899982698941237889999398898
Q 000845 523 LSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALS--KKTVLLVTHQVDFLPAFDSILLISGGEII 600 (1255)
Q Consensus 523 LSGGQkqRIaLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~--~kTvIlvTH~~~~l~~aD~Iivl~~G~i~ 600 (1255)
+++|+++|.+++++..++|+++++|||....+. . +.. ...+...++ ++|+|+++|+.+..+.+|++..+++|+++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~-~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKF-RDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHH-HHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHH-HHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEEECCEEE
T ss_conf 532013789999997409974230277731004-5-799-9999987505797899997447789863659987199999
Q ss_pred EECC
Q ss_conf 8138
Q 000845 601 QAAT 604 (1255)
Q Consensus 601 ~~Gt 604 (1255)
+.+.
T Consensus 159 ~v~~ 162 (178)
T d1ye8a1 159 ELTP 162 (178)
T ss_dssp ECCT
T ss_pred EECC
T ss_conf 9899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=1.7e-08 Score=78.93 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EEC
Q ss_conf 8892499999999998----1599939986688899999799999999987499389986269111311198999--959
Q 000845 1146 NWSMGQRQLIGLGRVV----LRRRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMDCNMVLS--MSD 1219 (1255)
Q Consensus 1146 ~LSgGQrQrl~lARAl----L~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~v--l~~ 1219 (1255)
.+|.|||+++.++..+ ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000845 1220 G 1220 (1255)
Q Consensus 1220 G 1220 (1255)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=3e-08 Score=76.92 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE--E
Q ss_conf 767938999999999970----3999789807678879998999999999562299589998269894123788999--9
Q 000845 521 VNLSGGQKQRIQLARALY----QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDSILL--I 594 (1255)
Q Consensus 521 ~~LSGGQkqRIaLARAly----~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~Iiv--l 594 (1255)
..+|+|||+...++..+. ..+.++++|||-++||+...+.+. +.+....++.-+|++||++.++..+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~-~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 1025777667777766556542267445543203357978999999-999985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 398
Q 000845 595 SGG 597 (1255)
Q Consensus 595 ~~G 597 (1255)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.0016 Score=39.83 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCHHHH
Q ss_conf 410211465089689999269999789999996--------468887896567788898530246-----8776793899
Q 000845 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAIL--------GELPRLQGMDLKMLPFGDLTQIGE-----RGVNLSGGQK 528 (1255)
Q Consensus 462 ~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~ll--------Ge~~~~~G~Dl~~lp~Gd~T~iGe-----~G~~LSGGQk 528 (1255)
+=.|+++. +.+....|.||+.|||||+|+.+. |-+-|-+-..+..+ +.-.|.+|. .|.+-=..+-
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~-d~I~~~~~~~d~~~~~~S~F~~E~ 108 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPI-DRIFTRVGAADDLASGRSTFMVEM 108 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCC-CEEEEEEC-----------CHHHH
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCC-HHHEEEECCCCCCCCCHHHHHHHH
T ss_conf 64057988-9953999954673136899998799999987297674176661344-202348746753436531899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCC
Q ss_conf 999999997039997898076788799989999999995622-9-95899982698941
Q 000845 529 QRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-S-KKTVLLVTHQVDFL 585 (1255)
Q Consensus 529 qRIaLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l-~-~kTvIlvTH~~~~l 585 (1255)
+|++-.----.+..++|+||+.++=++.-+..+....+..+. + +..++++||..+..
T Consensus 109 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 109 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 99999997454660885322235877456667898764543204544289852468776
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.35 E-value=0.0032 Score=37.46 Aligned_cols=118 Identities=22% Similarity=0.211 Sum_probs=72.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHHH
Q ss_conf 1465089689999269999789999996--------4688878965677888985302468-----77679389999999
Q 000845 467 NLEVKPAEKFAICGEVGAGKSTLLAAIL--------GELPRLQGMDLKMLPFGDLTQIGER-----GVNLSGGQKQRIQL 533 (1255)
Q Consensus 467 nl~i~~G~l~~ivG~~GsGKSTLl~~ll--------Ge~~~~~G~Dl~~lp~Gd~T~iGe~-----G~~LSGGQkqRIaL 533 (1255)
++.+. ++++.|.||+.|||||+|+.+. |-+-|-+...+.. -+.-.|.+|.. |.+.=..+-+|++-
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~-~d~I~~~~~~~d~~~~~~StF~~el~~~~~ 107 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPL-FDGIYTRIGASDDLAGGKSTFMVEMEEVAL 107 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECC-CSEEEEECCC------CCSHHHHHHHHHHH
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEE-CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 58847-8679997887345323455658999998525046137519940-116999987776023783078986788987
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC
Q ss_conf 9997039997898076788799989999999995622-9958999826989412
Q 000845 534 ARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-SKKTVLLVTHQVDFLP 586 (1255)
Q Consensus 534 ARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l-~~kTvIlvTH~~~~l~ 586 (1255)
.----.+..++|+||+.++=|+.-+..+....+..+. ++.+++++||..+...
T Consensus 108 il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 108 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 750289772785545456862332002588888888623761378652023332
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0014 Score=40.23 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=63.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCC------CCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCC
Q ss_conf 9689999269999789999996468887----896567------78889853024687--76793899999999997039
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELPRL----QGMDLK------MLPFGDLTQIGERG--VNLSGGQKQRIQLARALYQD 540 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~~~----~G~Dl~------~lp~Gd~T~iGe~G--~~LSGGQkqRIaLARAly~~ 540 (1255)
|=.++++|++|+|||||++.|.|+-... .|.... .+++.....+...| ..-.+.++..+..+...|.+
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999989999989999999968886675124664220476532026823541365321224652024789999999874
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 99789807678879998999999999562299589998269894123
Q 000845 541 RDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPA 587 (1255)
Q Consensus 541 ~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~ 587 (1255)
+|+++++-.-+.-+.......+.+.+.....++.+|+|.+..+..+.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
T ss_conf 13320110256542034555444555420141010204654443355
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.26 E-value=0.0008 Score=42.15 Aligned_cols=107 Identities=25% Similarity=0.242 Sum_probs=73.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 0896899992699997899999964688878965677--------88898530246877679389999999999703999
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKM--------LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~--------lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~ 542 (1255)
.++-++.|.||+||||||.+.+++.+++.. +..+-. ++.--++++.+. .|+.---+|..++-+|||
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~-~~~i~tiEdPiE~~~~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPD 229 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGIGQTQVNPR-----VDMTFARGLRAILRQDPD 229 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSSEEEECBGG-----GTBCHHHHHHHHGGGCCS
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCEEEECCC-----CCCCHHHHHHHHHHHCCC
T ss_conf 410548987678777447799986662578-74699962674345678870265587-----677999999999841388
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCE
Q ss_conf 789807678879998999999999562299589998269894123788
Q 000845 543 IYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLPAFDS 590 (1255)
Q Consensus 543 I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~~aD~ 590 (1255)
|++..|.- |+.+++..+ .....|..|+-.-|.-+-....++
T Consensus 230 vi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 230 VVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp EEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSSHHHHHH
T ss_pred EEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCHHHHHHH
T ss_conf 89845768---759999999----997249858998336766766543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.96 E-value=0.00029 Score=45.61 Aligned_cols=27 Identities=30% Similarity=0.770 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 968999926999978999999646888
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
|.-+.|+|++||||||++++|++++++
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 788899940356625789998653014
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.90 E-value=0.0077 Score=34.41 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=80.4
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCC-CEEECCCCCCCCCCHHHH
Q ss_conf 211258974894999994899948999999842-588998789996973899994786414-178716875577752221
Q 000845 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALFR-LVEPTGGKIIIDGLDITTIGLYDLRSN-LGIIPQDPTLFSGSVRYN 1098 (1255)
Q Consensus 1021 L~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~r-l~~~~~G~I~idG~di~~i~~~~lR~~-i~~VpQ~p~LF~gTIr~N 1098 (1255)
|..+.--+.+|+.+-|.|++|+||||++.-+.. +..-..-.+.+-. . +.+.+.+..+ ++...+-+.-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s--~-E~~~~~~~~r~~~~~~~~~~~-------- 93 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM--L-EESVEETAEDLIGLHNRVRLR-------- 93 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE--S-SSCHHHHHHHHHHHHTTCCGG--------
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE--E-CCCHHHHHHHHHHHHHCCCCH--------
T ss_conf 88874697898089999479997999999999726553366345764--0-111135776999986458710--------
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCC--
Q ss_conf 5669999968898405952599762479999963138630000799988924999999999981--599939986688--
Q 000845 1099 LDPLSQFTDQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVL--RRRQILVLDEAT-- 1174 (1255)
Q Consensus 1099 Ldp~~~~sd~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL--~~~~ILiLDEaT-- 1174 (1255)
. .+.--.+ .++...+.++.......-...+.+........ ..+...+... .+++++++|=.+
T Consensus 94 -----~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l 159 (277)
T d1cr2a_ 94 -----Q-SDSLKRE------IIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIV 159 (277)
T ss_dssp -----G-CHHHHHH------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC-
T ss_pred -----H-HCCCCCC------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf -----1-0122222------14567788898874035214662143310689--99998654321367625997054212
Q ss_pred ---CCCCHH--HHHHHHHHHHHHC--CCCEEEEECCCCH----------------HH------H-HCCEEEEEEC
Q ss_conf ---899999--7999999999874--9938998626911----------------13------1-1198999959
Q 000845 1175 ---ASIDNA--TDSILQNTIRREF--ANCTVITVAHRIA----------------TV------M-DCNMVLSMSD 1219 (1255)
Q Consensus 1175 ---S~lD~~--te~~I~~~l~~~~--~~~TvI~IaHrl~----------------ti------~-~~DrI~vl~~ 1219 (1255)
..-+.. .-..+.+.+++.. .++++++++|=-. .+ . .+|.++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 034654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0096 Score=33.67 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8968999926999978999999646888789656778889853--02468776793899999999997039997898076
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLT--QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T--~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
...-+.++||.|||||++.++|..++.. .+-.+..++.. .+|+ +-++-|-.+..|-...|.|+++||.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~~----~~~~i~~~~l~~~~~g~------~~~~l~~~f~~A~~~~P~il~iDei 113 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSDFVEMFVGV------GASRVRDMFEQAKKAAPCIIFIDEI 113 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC----CEEEECSCSSTTSCCCC------CHHHHHHHHHHHHTTCSEEEEETTH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCC----CEEEEEHHHHHHCCHHH------HHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf 8886786689988822899999998299----87998869942600107------8999999999999759989999775
Q ss_pred CCC----------CCHHHHHHHHH---HHHHHHCCC--CEEEEECCCCCCCC
Q ss_conf 788----------79998999999---999562299--58999826989412
Q 000845 550 FSA----------LDAKTAKFLFT---EYVMGALSK--KTVLLVTHQVDFLP 586 (1255)
Q Consensus 550 ~Sa----------lD~~~~~~i~~---~~i~~~l~~--kTvIlvTH~~~~l~ 586 (1255)
=+- -+... +.++. ..+.+...+ --+|..|++++.++
T Consensus 114 D~l~~~r~~~~~~~~~~~-~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld 164 (256)
T d1lv7a_ 114 DAVGRQRGAGLGGGHDER-EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (256)
T ss_dssp HHHTCCCSTTSCCTTCHH-HHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred HHHCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf 665756789888874899-999999999953877779989998079931079
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.0077 Score=34.42 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=66.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 65089689999269999789999996468887896567788898530246877679389999999999703999789807
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDd 548 (1255)
.+++..-+.+.||.|+|||+|.+++.+++.. .+-.+..++. .+.. . -...++-|-.+.+|--..|-|+++||
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~----~~~~~~~~~l--~~~~-~-~~~~~~l~~~f~~A~~~~p~il~ide 108 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGPEL--LTMW-F-GESEANVREIFDKARQAAPCVLFFDE 108 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC----EEEEECHHHH--HTSC-T-TTHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCC----CEEEEEHHHH--HHCC-C-CCHHHHHHHHHHHHHHCCCCCEEHHH
T ss_conf 9998875788789987630477887877189----4799887995--2531-6-51589999999999863984356875
Q ss_pred CCCCCCHH---------HHHHHHHHHH---HHHCC--CCEEEEECCCCCCCCC
Q ss_conf 67887999---------8999999999---56229--9589998269894123
Q 000845 549 PFSALDAK---------TAKFLFTEYV---MGALS--KKTVLLVTHQVDFLPA 587 (1255)
Q Consensus 549 p~SalD~~---------~~~~i~~~~i---~~~l~--~kTvIlvTH~~~~l~~ 587 (1255)
.=+..... ..+.+....+ .+... +.-+|..||+++.++.
T Consensus 109 id~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 109 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp GGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCH
T ss_conf 46324557876788737999999999999628677799899991799222799
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.0048 Score=36.03 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=33.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 58974894999994899948999999842588998789996
Q 000845 1025 TCTFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 1025 sl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~id 1065 (1255)
..-++.|..+-|+|+|||||||++++|++..++..=-|.|-
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998378889994035662578999865301456233113
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.42 E-value=0.0078 Score=34.37 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=56.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 899992699997899999964688878965677888985--30246877679389999999999703999789807678-
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDL--TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS- 551 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~--T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~S- 551 (1255)
-+.+.||.|+|||++.++|..++.. .+-.+..++. ..+|+ +.++-|-....|-...|.|+++||.=+
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~~g~------~~~~l~~~f~~a~~~~p~Ii~iDeid~l 113 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMFVGV------GAARVRDLFETAKRHAPCIVFIDEIDAV 113 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHHHHHHSCTTH------HHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC----CEEEEEHHHHHHCCCCH------HHHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf 4887668988835999999987399----77997869964624538------9999999999999769979999773664
Q ss_pred ---------CCCHHHHHHHHHHH---HHHHCCC-C-EEEEECCCCCCCCC
Q ss_conf ---------87999899999999---9562299-5-89998269894123
Q 000845 552 ---------ALDAKTAKFLFTEY---VMGALSK-K-TVLLVTHQVDFLPA 587 (1255)
Q Consensus 552 ---------alD~~~~~~i~~~~---i~~~l~~-k-TvIlvTH~~~~l~~ 587 (1255)
.-+.+. +.++..+ +.++..+ + -+|..|++++.++.
T Consensus 114 ~~~r~~~~~~~~~~~-~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~ 162 (247)
T d1ixza_ 114 GRKRGSGVGGGNDER-EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 162 (247)
T ss_dssp HC---------CHHH-HHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH
T ss_conf 746789988875899-9999999999638777899899980799400699
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.42 E-value=0.024 Score=30.60 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC----C--CC----CCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCC
Q ss_conf 899992699997899999964688878----9--65----67788898530246877679--389999999999703999
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQ----G--MD----LKMLPFGDLTQIGERGVNLS--GGQKQRIQLARALYQDRD 542 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~----G--~D----l~~lp~Gd~T~iGe~G~~LS--GGQkqRIaLARAly~~~~ 542 (1255)
.++|+|.+|+|||||++.|+|.-.... | .+ .....+...+.+.-.|..-. ..+..-...+..-+.++|
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad 86 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 86 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCCCCCC
T ss_conf 99999999999999999996888503315577322112111332001355303443111122220000111122223320
Q ss_pred EEEEE-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 78980-767887999899999999956229958999826989
Q 000845 543 IYLLD-DPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 543 I~LLD-dp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
++++- |.....+... +.+. +.+.....++-+|+|-+..+
T Consensus 87 ~il~v~D~~~~~~~~~-~~i~-~~l~~~~~~~piilv~NK~D 126 (178)
T d1wf3a1 87 AVVWVVDLRHPPTPED-ELVA-RALKPLVGKVPILLVGNKLD 126 (178)
T ss_dssp EEEEEEETTSCCCHHH-HHHH-HHHGGGTTTSCEEEEEECGG
T ss_pred CEEEEECHHHHHCCCC-CCHH-HHEECCCCCHHHHHHHCCCC
T ss_conf 0356551266301321-1201-21001232202222000160
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.017 Score=31.69 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=56.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-----C-----CCCCC--CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688878-----9-----65677--888-9853024687767938999999999970399
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQ-----G-----MDLKM--LPF-GDLTQIGERGVNLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~-----G-----~Dl~~--lp~-Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~ 541 (1255)
-++|+|.+|+|||||+++|+|.-.... | .+... .|+ ...+.+.-.|..-...+ .+=-+++--..+.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~-~~~~~~~~~~~~~ 136 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP-PDTYLEKMKFYEY 136 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC-HHHHHHHTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC-HHHHHHHHHHHCC
T ss_conf 799989999978999999958886777567899988704455311068970799837985433344-9999987433226
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 978980767887999899999999956229958999826989
Q 000845 542 DIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 542 ~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
|++|+|-.- .... ....+.+.+ .. .++-+++|-+..+
T Consensus 137 d~~l~~~~~-~~~~-~d~~l~~~l-~~--~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 137 DFFIIISAT-RFKK-NDIDIAKAI-SM--MKKEFYFVRTKVD 173 (400)
T ss_dssp SEEEEEESS-CCCH-HHHHHHHHH-HH--TTCEEEEEECCHH
T ss_pred EEEEEECCC-CCCH-HHHHHHHHH-HH--CCCCEEEEEECCC
T ss_conf 599996588-8878-899999999-97--6998799970863
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.0068 Score=34.87 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE--EE
Q ss_conf 689999269999789999996468----887896567788898530246877679389999999999703999789--80
Q 000845 474 EKFAICGEVGAGKSTLLAAILGEL----PRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL--LD 547 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~----~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~L--LD 547 (1255)
+-++|+|+.|+|||||++.+++.- .++.|.+.......+...+.-.-....|..+.|....+..+..++..+ .|
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 98999999998989999999809987642870278999999645435444420211234330156665543055634777
Q ss_pred CCCCCCCHHHHHHHHHHHHH--HHC-CCCEEEEECCCCCCC
Q ss_conf 76788799989999999995--622-995899982698941
Q 000845 548 DPFSALDAKTAKFLFTEYVM--GAL-SKKTVLLVTHQVDFL 585 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~~~i~--~~l-~~kTvIlvTH~~~~l 585 (1255)
-.-..-+.......+.+.+. ... ++..++++.|..+..
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~ 121 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 66653459999999999997688751589479999885467
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=8e-05 Score=50.01 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=78.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCC------CCC
Q ss_conf 49999948999489999998425889987899969738999947864141787168755777522215669------999
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPL------SQF 1105 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr~NLdp~------~~~ 1105 (1255)
..|.|+|+.|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++.... ...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred CH-HHHHHCCCCHHHHHHCCHHHHHHH-HHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 96-889840595259976247999996-3138630000799988924999999999981599939986688899999799
Q 000845 1106 TD-QEIWEVTIPSQVLEKCQLREVIQE-KKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVLDEATASIDNATDS 1183 (1255)
Q Consensus 1106 sd-~ei~~~~~~~~al~~~~l~~~i~~-lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiLDEaTS~lD~~te~ 1183 (1255)
.+ +++.+ . ....+ +.+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+...
T Consensus 82 ~~~~~~~~------~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (189)
T d2i3ba1 82 VDLTSFEQ------L-ALPVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL-- 151 (189)
T ss_dssp ECHHHHHT------T-TTTTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--
T ss_pred CCHHHHHH------H-HHHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--
T ss_conf 03777777------8-89999-99988762189706861433330535999999999854686599961555775569--
Q ss_pred HHHHHHHHHCCCCEEEEECC
Q ss_conf 99999998749938998626
Q 000845 1184 ILQNTIRREFANCTVITVAH 1203 (1255)
Q Consensus 1184 ~I~~~l~~~~~~~TvI~IaH 1203 (1255)
.+.+.++ ..++.+++.++.
T Consensus 152 ~~~~~~~-~~~~~~~~~lt~ 170 (189)
T d2i3ba1 152 ALVEEIR-NRKDVKVFNVTK 170 (189)
T ss_dssp TTHHHHH-TTCCSEEEECCS
T ss_pred HHHHHHH-CCCCCEEEEECH
T ss_conf 9999986-789974999786
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0027 Score=38.02 Aligned_cols=28 Identities=36% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8968999926999978999999646888
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
+|+.++++|++|.|||||+++|+|+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~ 121 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL 121 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH
T ss_conf 6980899788987788887730535550
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.01 E-value=0.0059 Score=35.34 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCCCEEE--EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 41021146--50896899992699997899999964688
Q 000845 462 TLRNINLE--VKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 462 ~L~~inl~--i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.|+.+ +. +++|+++.|.|++|||||+|+.-++-...
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 79884-568986984999991899999999999999998
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.047 Score=28.27 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 40211258974894999994899948999999842
Q 000845 1019 LVLRGITCTFEGGHKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1019 ~vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
.++.+ +.||+.+-|+|++|+|||||+..|.-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 98689----55895899992899989999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.72 E-value=0.0051 Score=35.87 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89499999489994899999984258899878999
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~i 1064 (1255)
+|+...++|.||.|||||++.|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.71 E-value=0.0091 Score=33.85 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 841021146508968999926999978999999646888789
Q 000845 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 461 ~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G 502 (1255)
|.|++..--+.+|++++|.|++|+|||+++.-+.-.+....|
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g 64 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 668887469789808999947999799999999972655336
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.049 Score=28.14 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=61.8
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCCE
Q ss_conf 114650896899992699997899999964688878965677888985302468776793--899999999997039997
Q 000845 466 INLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSG--GQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 466 inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSG--GQkqRIaLARAly~~~~I 543 (1255)
..+..++| +.+.||.|||||++.+++..+... .+..+..++ +. ....| -++-|-....|-...|.|
T Consensus 33 ~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~~----~~~~i~~~~---l~---~~~~g~~~~~l~~~f~~A~~~~p~i 100 (258)
T d1e32a2 33 IGVKPPRG--ILLYGPPGTGKTLIARAVANETGA----FFFLINGPE---IM---SKLAGESESNLRKAFEEAEKNAPAI 100 (258)
T ss_dssp CCCCCCCE--EEEECCTTSSHHHHHHHHHHHTTC----EEEEECHHH---HT---TSCTTHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCC----EEEEEECHH---HC---CCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 79998864--687669988830899999987488----379997304---30---2545617888899999998649949
Q ss_pred EEEECCCCCCCHHHH------HHHHHHHH---HHHCC--CCEEEEECCCCCCCC
Q ss_conf 898076788799989------99999999---56229--958999826989412
Q 000845 544 YLLDDPFSALDAKTA------KFLFTEYV---MGALS--KKTVLLVTHQVDFLP 586 (1255)
Q Consensus 544 ~LLDdp~SalD~~~~------~~i~~~~i---~~~l~--~kTvIlvTH~~~~l~ 586 (1255)
+++||.=+-...... +.+..... .+... +..+|..|++++.++
T Consensus 101 l~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld 154 (258)
T d1e32a2 101 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 154 (258)
T ss_dssp EEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSC
T ss_pred EEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 985211132257887777068999877500110123468811797579931025
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.015 Score=32.05 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=50.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC----CCCC----CCCCCCCCCCCC--CCCC---CCCHHHHHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688878----9656----778889853024--6877---67938999999999970399
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQ----GMDL----KMLPFGDLTQIG--ERGV---NLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~----G~Dl----~~lp~Gd~T~iG--e~G~---~LSGGQkqRIaLARAly~~~ 541 (1255)
.++++|+.|+|||||++.|+|.-.... |.+. ..+..++.+.+. ..|. .--+........++..+.++
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999998999999996777530314476353132221221221111124542132101223322220000235557
Q ss_pred CEEEE-ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 97898-07678879998999999999562299589998269894
Q 000845 542 DIYLL-DDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 542 ~I~LL-Ddp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
|++++ .|+......... .+.+. +.. .++-+|+|-+..+.
T Consensus 82 d~i~~~~~~~~~~~~~~~-~~~~~-l~~--~~~pviiv~NK~Dl 121 (171)
T d1mkya1 82 DLVLFVVDGKRGITKEDE-SLADF-LRK--STVDTILVANKAEN 121 (171)
T ss_dssp SEEEEEEETTTCCCHHHH-HHHHH-HHH--HTCCEEEEEESCCS
T ss_pred CEEEEEECCCCCCCCCCC-CCCCC-CCC--CCCCCCCCCHHHHH
T ss_conf 189996011211222211-11222-222--22110013102334
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.0072 Score=34.64 Aligned_cols=22 Identities=55% Similarity=0.721 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++|+|++|+|||||+++|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.59 E-value=0.017 Score=31.67 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++|+|++|+|||||+++|.|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.41 E-value=0.016 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=12.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHH
Q ss_conf 50896899992699997899999
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAA 492 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~ 492 (1255)
+++|+++.|.|++|+|||+|+.-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHH
T ss_conf 96983999994799999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.005 Score=35.91 Aligned_cols=104 Identities=18% Similarity=0.333 Sum_probs=53.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CC----CCCCCCCCCC--CC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899992699997899999964-68----8878965677--88-8985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILG-EL----PRLQGMDLKM--LP-FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llG-e~----~~~~G~Dl~~--lp-~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|+.|+|||||++.+.+ +. .++-|.+... .. +|..-.+. .--.+||..--.+.+..|++++++++
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~---i~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLM---LWDTAGQEEFDAITKAYYRGAQACVL 80 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEE---EECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEE---EECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999899598999999982988864354321221101011068403565---42137863210324546306866999
Q ss_pred ECCCCCCCHHHHHHHHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf 0767887999899999999---9562299589998269894
Q 000845 547 DDPFSALDAKTAKFLFTEY---VMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i~~~~---i~~~l~~kTvIlvTH~~~~ 584 (1255)
.++.-|..+-+.+ .+. +.....+..+|+|.+..+.
T Consensus 81 --v~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl 118 (164)
T d1z2aa1 81 --VFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDL 118 (164)
T ss_dssp --EEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGG
T ss_pred --EEECCCHHHHHHC-CCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf --9942322444302-2343322223898327776325775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.007 Score=34.77 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999994899948999999842588
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
|..+.|+||||||||||.+.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.18 E-value=0.0094 Score=33.75 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=5.3
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999703
Q 000845 529 QRIQLARALYQ 539 (1255)
Q Consensus 529 qRIaLARAly~ 539 (1255)
+=+.+++.+-.
T Consensus 150 ~d~~l~~~l~~ 160 (400)
T d1tq4a_ 150 NDIDIAKAISM 160 (400)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 89999999997
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.12 E-value=0.013 Score=32.65 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=58.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHCCCCCEEEEECCC
Q ss_conf 6899992699997899999964688878965677888985302468776793899---9999999970399978980767
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQK---QRIQLARALYQDRDIYLLDDPF 550 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQk---qRIaLARAly~~~~I~LLDdp~ 550 (1255)
.-+.+.||.|||||++.++|..+... .+-.+...+ ..+| .+|+.. -|-.+.+|....|.|+++||.=
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~~----~~~~i~~~~-~~~g-----~~~~~~~~~i~~if~~A~~~~p~il~iDEid 110 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESNF----PFIKICSPD-KMIG-----FSETAKCQAMKKIFDDAYKSQLSCVVVDDIE 110 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC----SEEEEECGG-GCTT-----CCHHHHHHHHHHHHHHHHTSSEEEEEECCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC----CCCCCCCCC-CCCC-----CCCCCHHHHHHHHHHHHHHCCCCEEEHHHHH
T ss_conf 07998896999889999998620100----233345652-2356-----5421122444445655553242223310256
Q ss_pred CC-----CCHHHHHHHHHHHH---HHHC-CC-CE-EEEECCCCCCC------CCCCEEEEE
Q ss_conf 88-----79998999999999---5622-99-58-99982698941------237889999
Q 000845 551 SA-----LDAKTAKFLFTEYV---MGAL-SK-KT-VLLVTHQVDFL------PAFDSILLI 594 (1255)
Q Consensus 551 Sa-----lD~~~~~~i~~~~i---~~~l-~~-kT-vIlvTH~~~~l------~~aD~Iivl 594 (1255)
+- .+++..+.+++..+ .+.. ++ +. +|.+|++++.+ ...|..+.+
T Consensus 111 ~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~ 171 (246)
T d1d2na_ 111 RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV 171 (246)
T ss_dssp HHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHCCCHHHCCCCCEEEEC
T ss_conf 6765134544124789999999860777654501455324883225610201866338855
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.10 E-value=0.0017 Score=39.51 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+|+.++++|++|.|||||+++|+|+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 356499987787348789875151767
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.014 Score=32.28 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 689999269999789999996468887
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPRL 500 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~~ 500 (1255)
+.+.|+|++|+|||||+..+..++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.07 E-value=0.039 Score=28.89 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.03 E-value=0.0035 Score=37.11 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 968999926999978999999646888
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
|.+++++||+|||||||.+.|..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.96 E-value=0.027 Score=30.20 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-C----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8999926999978999999646-8----8878965677888985302468776793899999999997039997898076
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-L----PRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-~----~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
.++++|+.|+|||||++.+.+. . .++.|.+...+..++.+.. -... |||..-....+..+.+++.+++ .
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~---i~D~-~G~~~~~~~~~~~~~~~~~~i~--v 77 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK---LWDI-GGQPRFRSMWERYCRGVSAIVY--M 77 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEE---EEEE-CCSHHHHTTHHHHHTTCSEEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEE---EEEC-CCCCCCCCCCCCCCCCCCHHHC--C
T ss_conf 99999999989899999997197887405641024424542268888---8401-0001211222222223310110--1
Q ss_pred CCCCCHHHH---HHHHHHHHHH-HCCCCEEEEECCCCC
Q ss_conf 788799989---9999999956-229958999826989
Q 000845 550 FSALDAKTA---KFLFTEYVMG-ALSKKTVLLVTHQVD 583 (1255)
Q Consensus 550 ~SalD~~~~---~~i~~~~i~~-~l~~kTvIlvTH~~~ 583 (1255)
+++.|..+- ...+.+++.. ..++.-++++.+..+
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~D 115 (164)
T d1zd9a1 78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 115 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 33212211100246666655442146985899985256
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.96 E-value=0.081 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHH
Q ss_conf 5999399866888999997999999999874--9938998626911131
Q 000845 1163 RRRQILVLDEATASIDNATDSILQNTIRREF--ANCTVITVAHRIATVM 1209 (1255)
Q Consensus 1163 ~~~~ILiLDEaTS~lD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~ 1209 (1255)
.+..++++||...+-|++-...+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.95 E-value=0.081 Score=26.39 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=49.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC-----CC---CCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCE-E
Q ss_conf 999926999978999999646888789-----65---6778889853024687--76793899999999997039997-8
Q 000845 476 FAICGEVGAGKSTLLAAILGELPRLQG-----MD---LKMLPFGDLTQIGERG--VNLSGGQKQRIQLARALYQDRDI-Y 544 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~~~~G-----~D---l~~lp~Gd~T~iGe~G--~~LSGGQkqRIaLARAly~~~~I-~ 544 (1255)
++|+|++.+|||||+++|+|.-..... .. +..............+ .--.+|+..-+.-+......+|+ +
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~i 87 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLAL 87 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 99990778709999999997439562022330012133022230000137852110125322321000123443024321
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9807678879998999999999562299589998269894
Q 000845 545 LLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 545 LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
++-|+...+.+++.+ ++..+. . .++-+++|-+..+.
T Consensus 88 lv~d~~~g~~~~~~~-~~~~~~-~--~~~p~iiv~NKiD~ 123 (179)
T d1wb1a4 88 IVVDAKEGPKTQTGE-HMLILD-H--FNIPIIVVITKSDN 123 (179)
T ss_dssp EEEETTTCSCHHHHH-HHHHHH-H--TTCCBCEEEECTTS
T ss_pred CCCCCCCCCCHHHHH-HHHHHH-H--CCCCCEECCCCCCC
T ss_conf 212222211023454-455555-2--59762011232344
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.083 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 999399866888999997999999999874993899862691113
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATV 1208 (1255)
Q Consensus 1164 ~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1208 (1255)
+.+++++||+-. +..+....+.+.+.+....+..|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.82 E-value=0.0093 Score=33.78 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
+|+|+|++|+|||||++.|++.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.80 E-value=0.036 Score=29.12 Aligned_cols=103 Identities=19% Similarity=0.285 Sum_probs=50.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC----CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE--EEEE
Q ss_conf 89999269999789999996468887896----567788898-5302468776793899999999997039997--8980
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGM----DLKMLPFGD-LTQIGERGVNLSGGQKQRIQLARALYQDRDI--YLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~----Dl~~lp~Gd-~T~iGe~G~~LSGGQkqRIaLARAly~~~~I--~LLD 547 (1255)
.++++|+.|+|||||++.+.|+.....+. ....+..++ .-.+ ..++|.++-| ...+..+.+++. +++|
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~----~D~~G~~~~~-~~~~~~~~~~~~~i~v~d 78 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNI----WDVGGQKSLR-SYWRNYFESTDGLIWVVD 78 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEE----EEECCSHHHH-TTGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEE----EECCCCHHHH-HHHHHHHHHHHCCEEEEE
T ss_conf 99999999989999999980899873023575304301134543036----6337605541-577764121002402220
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCCC
Q ss_conf 76788799989999999995-6229958999826989
Q 000845 548 DPFSALDAKTAKFLFTEYVM-GALSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~~~i~-~~l~~kTvIlvTH~~~ 583 (1255)
- ...-........+..++. ....+.-++++.+..+
T Consensus 79 ~-~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 114 (165)
T d1ksha_ 79 S-ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 114 (165)
T ss_dssp T-TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 1-23222788887666543210157996699974145
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.79 E-value=0.0077 Score=34.43 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.|+++++.|++||||||+.+.|..++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.75 E-value=0.054 Score=27.75 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.71 E-value=0.011 Score=33.28 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|+++|+||+||||+++.|+|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.087 Score=26.14 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=59.1
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCCC----CCCCCCC--CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 89999269999789999996-46888----7896567--788-8985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAIL-GELPR----LQGMDLK--MLP-FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~ll-Ge~~~----~~G~Dl~--~lp-~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.+. |+... +.|.+.. ... .+....+- =....|++..+-...+..|++++.+++
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ--LWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEE--EEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEE--EEECCCCHHHCCCCCEEEECCCCCEEE
T ss_conf 999999999298999999973999886476424220013445640221799--985057311032121036427882499
Q ss_pred ECCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCCCC
Q ss_conf 076788799989999---99999562-2995899982698941
Q 000845 547 DDPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~~l 585 (1255)
.++.-|+.+-+.+ +.++.... ..+.-+++|.+..+..
T Consensus 82 --v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~ 122 (165)
T d1z06a1 82 --VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122 (165)
T ss_dssp --EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred --EEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH
T ss_conf --99852356666554212787763258997199992135500
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0069 Score=34.82 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.01 Score=33.49 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.|.+++|+||+|+||+||.+.|+-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.56 E-value=0.035 Score=29.30 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 49999948999489999998425889987899969
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG 1066 (1255)
+.|.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.51 E-value=0.089 Score=26.07 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-++|+|++|+|||||..+|+...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999488980999999999970
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.46 E-value=0.1 Score=25.53 Aligned_cols=99 Identities=26% Similarity=0.314 Sum_probs=56.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CC
Q ss_conf 99992699997899999964688878965677888985302468776793899999999997039997898076788-79
Q 000845 476 FAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA-LD 554 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~Sa-lD 554 (1255)
+.|.|++|||||-|++++.-++... |.....++..+...-.. ..+..|+.+ -.+..+.++|++++||.=.- -+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~dll~iDDi~~i~~~ 112 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAMV--EHLKKGTIN---EFRNMYKSVDLLLLDDVQFLSGK 112 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHH--HHHHHTCHH---HHHHHHHTCSEEEEECGGGGTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEECHHHHHHHHH--HHHHCCCHH---HHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 7998889983999999999874467-65048844378799999--998716626---67898762130101126550586
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCC
Q ss_conf 9989999999995622-99589998269
Q 000845 555 AKTAKFLFTEYVMGAL-SKKTVLLVTHQ 581 (1255)
Q Consensus 555 ~~~~~~i~~~~i~~~l-~~kTvIlvTH~ 581 (1255)
...+..+| +++.... .++.+|+.+..
T Consensus 113 ~~~~~~lf-~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 113 ERTQIEFF-HIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHHHHHHH-HHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEECCC
T ss_conf 57788999-9999876316638995487
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.1 Score=25.53 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEEC
Q ss_conf 89999269999789999996468-8878965677----88898530246877679389999999999703-999789807
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-PRLQGMDLKM----LPFGDLTQIGERGVNLSGGQKQRIQLARALYQ-DRDIYLLDD 548 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-~~~~G~Dl~~----lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~-~~~I~LLDd 548 (1255)
.++++|+.|+|||||++.|.|+- .+..+.+... ..+...+.+...|..-..+. .+-...++... +.-+++.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~~~~~i~~vd~ 83 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK-LSDYLKTRAKFVKGLIFMVDS 83 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHH-HHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEECCEEEEEEECCEEEEEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999998899999999679999827762428999858848999852555321367-999998876412456248997
Q ss_pred CCCCC-CHHHHHHHHHHHH--HHH-CCCCEEEEECCCCCCC
Q ss_conf 67887-9998999999999--562-2995899982698941
Q 000845 549 PFSAL-DAKTAKFLFTEYV--MGA-LSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 549 p~Sal-D~~~~~~i~~~~i--~~~-l~~kTvIlvTH~~~~l 585 (1255)
..... ...+.+++.+... ... .++.-++++-|..+..
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~ 124 (209)
T d1nrjb_ 84 TVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124 (209)
T ss_dssp TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 34623399999999999999999874369869999800345
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.015 Score=32.11 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--------------CCCEEEECCEECCCCCHHHHHCC
Q ss_conf 8949999948999489999998425889--------------98789996973899994786414
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEP--------------TGGKIIIDGLDITTIGLYDLRSN 1080 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~--------------~~G~I~idG~di~~i~~~~lR~~ 1080 (1255)
.|..+-|+||||+||+||.+.|+.-++. ..|+ +||+|.--++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--43212334328999987
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.39 E-value=0.11 Score=25.42 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 748949999948999489999998425
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
+++|..+-|.|++|+|||+++.-+..-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.32 E-value=0.11 Score=25.31 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999269999789999996468
Q 000845 476 FAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
++|+|++.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.31 E-value=0.02 Score=31.23 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6899992699997899999964688
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++++++|++||||||+.+.|..+..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~ 27 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP 27 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7999989999999999999999579
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.30 E-value=0.015 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.23 E-value=0.0058 Score=35.37 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89499999489994899999984258899878999
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~i 1064 (1255)
+|.+..++|.||.|||||+++|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.19 E-value=0.022 Score=30.83 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8949999948999489999998425889987899969
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG 1066 (1255)
.|+.|.|+|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.028 Score=29.97 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=12.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0896899992699997899999964
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llG 495 (1255)
++-++++++|..||||||+...++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.12 Score=25.02 Aligned_cols=105 Identities=23% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC------CCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8999926999978999999646888------78965677---88898530246877679389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPR------LQGMDLKM---LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~------~~G~Dl~~---lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|..|+|||||++.+.+.... +.|.|... ..+|....+----..=..||.+- +.+..|++++.++
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~i 82 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYL 82 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCEEEEEEECCCCCCCCCCC--CCCCCCCCCCEEE
T ss_conf 99999989929999999997286775665662553100000004885155556214431222212--2333333442033
Q ss_pred E-ECCCCCCCHHHHHH---HHHHHHHH-HCCCCEEEEECCCCCC
Q ss_conf 8-07678879998999---99999956-2299589998269894
Q 000845 546 L-DDPFSALDAKTAKF---LFTEYVMG-ALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 546 L-Ddp~SalD~~~~~~---i~~~~i~~-~l~~kTvIlvTH~~~~ 584 (1255)
+ =|++ |..+-.. .+...... ...+..+++|.+..+.
T Consensus 83 lvfd~t---~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 123 (172)
T d2g3ya1 83 IVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123 (172)
T ss_dssp EEEETT---CHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred EEECCC---CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 431122---00012212355555430024677129998404453
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.11 E-value=0.02 Score=31.21 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896899992699997899999964688
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
|+|-.++|.|+.||||||+...|.-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.017 Score=31.77 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+++|.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.02 Score=31.10 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=55.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----8887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. +.+..|.+.. ....++.+.. -.-... +||.+=-.+.+..|++++.+++
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~d~-~g~~~~~~~~~~~~~~~~~~il- 78 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR-LQLWDT-AGQERFRSLIPSYIRDSAAAVV- 78 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEE-EEEEEE-CCSGGGGGGHHHHHTTCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCEE-EEECCC-CCCCHHCCCHHHHHHCCCEEEE-
T ss_conf 8999998990989999999849998763662231000001105997235-654256-8851100043888616644999-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 76788799989999---999995622995899982698941
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~~~l 585 (1255)
.++..|..+...+ ++........+..+++|.+..+..
T Consensus 79 -v~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (164)
T d1yzqa1 79 -VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 118 (164)
T ss_dssp -EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred -EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf -6065543132666766899998508996499973103404
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.99 E-value=0.019 Score=31.43 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=12.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8949999948999489999998425
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|..|.++|.+||||||+.+.|.+-
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9769998899999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.84 E-value=0.017 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
.+|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.80 E-value=0.13 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
....++|+|..|.|||||...+..+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~ 69 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSD 69 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 840899977997888999999998556
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.023 Score=30.67 Aligned_cols=24 Identities=38% Similarity=0.636 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 949999948999489999998425
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
|=+|+++|++|+|||||++.|.+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.12 Score=24.95 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=50.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999269999789999996468-----88789656778889853024687767----9389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLKMLPFGDLTQIGERGVNL----SGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~~lp~Gd~T~iGe~G~~L----SGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|..|+|||||++.+++.- ++..+.+..... -.++.....+ .+||.+--++....++++++++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i 81 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI----IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE----EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEE----EEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9999999994989999999729988756544343212579----998999998887156773367788888723785899
Q ss_pred EECCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCC
Q ss_conf 8076788799989999---999995622995899982698
Q 000845 546 LDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQV 582 (1255)
Q Consensus 546 LDdp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~ 582 (1255)
+ .++.-|..+-+.+ +..+........-++++.+..
T Consensus 82 l--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~ 119 (166)
T d1z0fa1 82 M--VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 119 (166)
T ss_dssp E--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred E--EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9--7406756777778888999986145652399980365
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.14 Score=24.55 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50896899992699997899999964
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~llG 495 (1255)
+.+|+++.|+|+.|+|||+|+..+.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.068 Score=26.97 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999269999789999996468-----8878965677----88898530246877679389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLKM----LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~~----lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|+.|+|||||++.+.+.- .++.|.+... ..++....+.-. =.+||..--.+.+..++.++.++
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~---d~~g~~~~~~~~~~~~~~~~~~i 80 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW---DTAGQERFQSLGVAFYRGADCCV 80 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEE---CCC----------CCSTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEE---CCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 999999999698999999970988876376545310123464057631201221---03872012467788752155489
Q ss_pred EE
Q ss_conf 80
Q 000845 546 LD 547 (1255)
Q Consensus 546 LD 547 (1255)
+-
T Consensus 81 lv 82 (175)
T d1ky3a_ 81 LV 82 (175)
T ss_dssp EE
T ss_pred EE
T ss_conf 98
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.73 E-value=0.022 Score=30.86 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.69 E-value=0.11 Score=25.28 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=46.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 899992699997899999964688878965677888985302468776----7938999999999970399978980767
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVN----LSGGQKQRIQLARALYQDRDIYLLDDPF 550 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~----LSGGQkqRIaLARAly~~~~I~LLDdp~ 550 (1255)
.++++|+.|+|||||++.+.+.-....+... .....+ ......+ --+|+...-..-+-.+.+++.+++--..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~ 77 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTI---GFNVET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCS---SCCEEE-EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCE---EEEEEE-EEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEEEEE
T ss_conf 8999999998989999999659888622111---467999-730169998862788400015666642053268999874
Q ss_pred CCCCHHH-HHHHHHHHHH-HHCCCCEEEEECCC
Q ss_conf 8879998-9999999995-62299589998269
Q 000845 551 SALDAKT-AKFLFTEYVM-GALSKKTVLLVTHQ 581 (1255)
Q Consensus 551 SalD~~~-~~~i~~~~i~-~~l~~kTvIlvTH~ 581 (1255)
+..+... ....+.+++. .......++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k 110 (160)
T d1r8sa_ 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANK 110 (160)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 273777777777788877640457549997510
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.68 E-value=0.14 Score=24.44 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=16.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999994899948999999842588
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
...+.+|||+|+||||.+-=|...+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98999989999998999999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.67 E-value=0.016 Score=31.92 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.++|+|++|||||||+..|.+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.58 E-value=0.068 Score=26.99 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=50.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8999926999978999999646-----888789656778889853024687767----9389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKMLPFGDLTQIGERGVNL----SGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~lp~Gd~T~iGe~G~~L----SGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|+.|+|||||++.+.+. +.+..|.+...... ........+ .+||..=-++-+..|+++++++
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i 82 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI----YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEE----EETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE----EEECCEEEEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99999999919899999997398886514555531046899----86243699999989985545889999974387789
Q ss_pred EECCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8076788799989999---9999956229958999826989
Q 000845 546 LDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 546 LDdp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
+= ++.-|..+...+ ++...........++++.+..+
T Consensus 83 lv--~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 121 (169)
T d3raba_ 83 LM--YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121 (169)
T ss_dssp EE--EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTT
T ss_pred EE--EECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 99--9781104343123443321023677524889973114
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.016 Score=32.00 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999926999978999999646888
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
+++|.|++||||||+.+.|...+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~ 106 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999689999876899999999730
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.52 E-value=0.017 Score=31.63 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999926999978999999646
Q 000845 476 FAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe 496 (1255)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.51 E-value=0.037 Score=29.05 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+++|+|++||||||+.+.|..++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.016 Score=31.87 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=52.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 89689999269999789999996468887896567788898530246877679389999999999703999789807678
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~S 551 (1255)
+.-.++|+|+.|+|||||+..+...+.. .|.-+..+.. |-+--- .|..+-| -|.|.. .+..++.+++-..|+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~-~g~~vavlav-Dpss~~-~ggailg-dr~rm~---~~~~~~~~~ir~~~~~ 125 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAV-DPSSPV-TGGSILG-DKTRMN---DLARAEAAFIRPVPSS 125 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE-CCC-----------------C---TTTTCTTEEEEEECC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECC-CCCEEE-ECCCCCC-CHHHHH---HHCCCCCCCCCCCCCC
T ss_conf 8328974389999899999999999975-6983322037-776100-0651554-136788---7405654101565553
Q ss_pred CCCHHHHHHHHHHHHH-HHCCCCEEEEE-CCCC-----CCCCCCCEEEEEE
Q ss_conf 8799989999999995-62299589998-2698-----9412378899993
Q 000845 552 ALDAKTAKFLFTEYVM-GALSKKTVLLV-THQV-----DFLPAFDSILLIS 595 (1255)
Q Consensus 552 alD~~~~~~i~~~~i~-~~l~~kTvIlv-TH~~-----~~l~~aD~Iivl~ 595 (1255)
+-=....+...+ ++. --..|..+|++ |-.. +....+|.++++-
T Consensus 126 g~lgg~~~~~~~-~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~ 175 (327)
T d2p67a1 126 GHLGGASQRARE-LMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQ 175 (327)
T ss_dssp ----CHHHHHHH-HHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEE
T ss_pred CCCCCCHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCEEEEEE
T ss_conf 444420332057-89998864998278750321121023440354389973
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=0.15 Score=24.19 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=50.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48949999948999489999998425889987899969738999947864141787168755777522215669999968
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQ 1108 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr~NLdp~~~~sd~ 1108 (1255)
+.-+-|-++|..||||||+.+.++.- .|.+.|+. ++++ +-+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~---------------------------~~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLG---------------------------SWQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHC---------------------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHH---------------------------HHH
T ss_conf 99989999899999899999999976----59789760--------7777---------------------------888
Q ss_pred HHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 8984059525997624799999631386300007999889249999-99999981599939986
Q 000845 1109 EIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQL-IGLGRVVLRRRQILVLD 1171 (1255)
Q Consensus 1109 ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr-l~lARAlL~~~~ILiLD 1171 (1255)
.+.+ .++ ..+..|.+..++ ..|.+..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~------~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVS------SCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHH------HHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHH------HHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999------999--------999779995551--76799999999999998558887999948
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.32 E-value=0.031 Score=29.68 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
+|+++|++|+|||||++.|++.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.32 E-value=0.031 Score=29.65 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|+++|++|+|||||++.|++-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.32 E-value=0.062 Score=27.28 Aligned_cols=104 Identities=26% Similarity=0.353 Sum_probs=53.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC----CCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999269999789999996468----88789656778889853-02468776793899999999997039997898076
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL----PRLQGMDLKMLPFGDLT-QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~----~~~~G~Dl~~lp~Gd~T-~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
.++++|+.|+|||||++.+.+.- .+..|.+...+..++.+ .+-+ -|||..=-...+..|.+++.+++-=
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d-----~~g~~~~~~~~~~~~~~~~~ii~v~- 91 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWD-----IGGQRKIRPYWRSYFENTDILIYVI- 91 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEE-----CSSCGGGHHHHHHHHTTCSEEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEE-----CCCCCCCHHHHHHHHHCCCEEEEEE-
T ss_conf 9999999998999999999648777520233105898504885676763-----2542100147788764155268862-
Q ss_pred CCCCCHHHHH---HHHHHHHHH-HCCCCEEEEECCCCCCC
Q ss_conf 7887999899---999999956-22995899982698941
Q 000845 550 FSALDAKTAK---FLFTEYVMG-ALSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 550 ~SalD~~~~~---~i~~~~i~~-~l~~kTvIlvTH~~~~l 585 (1255)
++-|..+.. ..+.+.... ...+.-++++.+..+..
T Consensus 92 -d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~ 130 (176)
T d1fzqa_ 92 -DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (176)
T ss_dssp -ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf -045654244444554433443036998599999740545
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.021 Score=31.01 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999489994899999984258899
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPT 1058 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~ 1058 (1255)
.++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.17 E-value=0.037 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=11.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
..|.|.|++||||||+.+.|.+.+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.15 E-value=0.17 Score=23.83 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCC
Q ss_conf 999926999978999999646888789-65677888985302468776793899999999997-0399978980767887
Q 000845 476 FAICGEVGAGKSTLLAAILGELPRLQG-MDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARAL-YQDRDIYLLDDPFSAL 553 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~~~~G-~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAl-y~~~~I~LLDdp~Sal 553 (1255)
..+.||.|+||||++.++..++....- .........+. +|....-........-+.+ ..+..++++||.-. +
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~-~ 111 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD-----RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA-M 111 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-----CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG-S
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC-----CCEEEEECCHHHCCCCCCCCCCCEEEEEEECCCC-C
T ss_conf 999889987755899999998516777641577315556-----8754321000101110002577718999966320-0
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 999899999999956229958999826989412
Q 000845 554 DAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586 (1255)
Q Consensus 554 D~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~ 586 (1255)
...... -+.+++....+....+++|++...+.
T Consensus 112 ~~~~~~-~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 112 TNAAQN-ALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp CHHHHH-HHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred HHHHHH-HHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 023789-99988631120023201267087759
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.11 E-value=0.036 Score=29.12 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4894999994899948999999842588
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.035 Score=29.25 Aligned_cols=22 Identities=50% Similarity=0.708 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.057 Score=27.59 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=47.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999269999789999996468-----88789656778889853024687767----9389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLKMLPFGDLTQIGERGVNL----SGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~~lp~Gd~T~iGe~G~~L----SGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|..|+|||||++.+.+.- .+..+.++.... -.++.+...| .+||..--++-+..|++++.++
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i 82 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKT----VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 82 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEE----EEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEE----EEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9999999991989999999729998764665542378999----999999999999989985435889999974326688
Q ss_pred EECCCCCCCHHHH---HHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8076788799989---9999999956229958999826989
Q 000845 546 LDDPFSALDAKTA---KFLFTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 546 LDdp~SalD~~~~---~~i~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
+ .++.-|+.+- ...+.........+..+|+|.+..+
T Consensus 83 ~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D 121 (171)
T d2ew1a1 83 L--TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121 (171)
T ss_dssp E--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred E--EEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 8--42214320011245665542013346356899996214
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.91 E-value=0.021 Score=31.00 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99992699997899999964688
Q 000845 476 FAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++++|.+++|||||++.|.|+-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~~ 26 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAHP 26 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968997
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.19 Score=23.49 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=53.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCC----CC-------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 999926999978999999646888789----65-------------677888985302468776793899999999997-
Q 000845 476 FAICGEVGAGKSTLLAAILGELPRLQG----MD-------------LKMLPFGDLTQIGERGVNLSGGQKQRIQLARAL- 537 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~~~~G----~D-------------l~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAl- 537 (1255)
+.+.||.|+||||+..++..++..... .+ +......+...+......-...... ....+..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVI-QELLKEVA 114 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHH-HHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCEE-EEHHHHHH
T ss_conf 99889999988999999997622764222221234443466631122110477631000010445775224-31022343
Q ss_pred --------------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf --------------0399978980767887999899999999956229958999826989412
Q 000845 538 --------------YQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586 (1255)
Q Consensus 538 --------------y~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~ 586 (1255)
..+..++++||+=. +.......+ .+.+.....+...|++|++++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~iiiide~d~-l~~~~~~~l-~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 115 QMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAAL-RRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp TTTC------------CCEEEEEECTTS-SCHHHHHHH-HHHHHHSTTTEEEEEEESCSCSSC
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCCCHHH-HCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 4331001211466678724999424333-454311122-100221356643000102111002
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.039 Score=28.85 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
.-+-|+||||+||+||.+.|++-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.037 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=20.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489499999489994899999984258
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.74 E-value=0.041 Score=28.70 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.02 Score=31.20 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=15.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999948999489999998425
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
-+|+|+|++++|||||++.|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999889999899999998589
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.70 E-value=0.05 Score=28.03 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|+|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.049 Score=28.11 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=53.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-----CCCCCCC--CC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999926999978999999646888-----7896567--78-88985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPR-----LQGMDLK--ML-PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~-----~~G~Dl~--~l-p~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++|+|+.|+|||||++.+++.-.. ..+.+.. .. ..+..-.+. .-=.+||..--++.+..|.+++++++
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~d~~g~~~~~~~~~~~~~~~d~~il 81 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ---IWDTAGQESFRSITRSYYRGAAGALL 81 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEE---EECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEEEEEEEEE---EECCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999999999399999999962999987566411011013321301688787---64146863224677887404678999
Q ss_pred ECCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEECCCCC
Q ss_conf 0767887999899999---999956229958999826989
Q 000845 547 DDPFSALDAKTAKFLF---TEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i~---~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
.++.-|+.+-.++. .........+..+++|.+..+
T Consensus 82 --v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (173)
T d2a5ja1 82 --VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119 (173)
T ss_dssp --EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred --EEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf --97525848877678889999985799985999952775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.62 E-value=0.048 Score=28.20 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=25.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 489499999489994899999984258899878
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~ 1061 (1255)
.++=-+-++|||||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.62 E-value=0.033 Score=29.49 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9689999269999789999996468
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+++++|.|+.||||||+++.|.-.+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998999989899999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.028 Score=30.05 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=51.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----888789656778--889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKML--PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~l--p~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+++. +.++.|...... .+|..-.+. .--.+||..--.+....|.+++++++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~---~~d~~g~~~~~~~~~~~~~~a~~~il- 79 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQ---ITDTTGSHQFPAMQRLSISKGHAFIL- 79 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEE---EEECCSCSSCHHHHHHHHHHCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCCCEEC---CCCCCCCCCCCCCCCCCCCCEEEEEE-
T ss_conf 89999989979899999997099987637613310112100022000001---11235652111012434332038999-
Q ss_pred CCCCCCCHHHHHHHHH---HHH--HHHCCCCEEEEECCCCC
Q ss_conf 7678879998999999---999--56229958999826989
Q 000845 548 DPFSALDAKTAKFLFT---EYV--MGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~---~~i--~~~l~~kTvIlvTH~~~ 583 (1255)
.++.-|+.+-+.+-+ ... .+...+.-+++|-+..+
T Consensus 80 -v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~D 119 (171)
T d2erxa1 80 -VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 119 (171)
T ss_dssp -EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred -EEECCCCCCHHCCCCHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf -7202221100102102343333404678986899960665
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.18 Score=23.61 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=52.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC----CCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8999926999978999999646888----7896567--788898530246877679389999999999703999789807
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPR----LQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDD 548 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~----~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDd 548 (1255)
.++++|..|+|||||++.+.+.-.. +.+.+.. ...+|..-.+-- .. .+||..--++.+..|++++.+++
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i--~D-~~g~e~~~~~~~~~~~~~d~~il-- 77 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV--YD-IWEQDGGRWLPGHCMAMGDAYVI-- 77 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEE--EE-CC-------CHHHHHTSCSEEEE--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCCCEEE--EE-CCCCCCCCEECCCCHHHHHHHCE--
T ss_conf 99998989939999999981885677588156653001001233321034--20-11122200002310111110100--
Q ss_pred CCCCCCHHHHHHH---HHHHHHHHC--CCCEEEEECCCCCC
Q ss_conf 6788799989999---999995622--99589998269894
Q 000845 549 PFSALDAKTAKFL---FTEYVMGAL--SKKTVLLVTHQVDF 584 (1255)
Q Consensus 549 p~SalD~~~~~~i---~~~~i~~~l--~~kTvIlvTH~~~~ 584 (1255)
.++.-|+.+-..+ +.+. .... .+..+++|.+..+.
T Consensus 78 v~d~t~~~s~~~~~~~~~~i-~~~~~~~~~piilvgnK~Dl 117 (168)
T d2gjsa1 78 VYSVTDKGSFEKASELRVQL-RRARQTDDVPIILVGNKSDL 117 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHH-HHHCC--CCCEEEEEECTTC
T ss_pred ECCCCCCCCCCCCCCCCCHH-HCCCCCCCCEEEEEECCCCH
T ss_conf 01342222211212121100-00245553137985036552
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.13 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999994899948999999842-----5889987
Q 000845 1033 KIGVVGRTGSGKTTLISALFR-----LVEPTGG 1060 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r-----l~~~~~G 1060 (1255)
||+++|.+|+|||||++.+.+ -+.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.50 E-value=0.054 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=14.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489499999489994899999984258
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
|+|-++.|+|+.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.48 E-value=0.043 Score=28.55 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999948999489999998425889
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEP 1057 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~ 1057 (1255)
.|||.|++|||||||.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.44 E-value=0.051 Score=27.95 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCC-CC---CCC-CCCCCCCCCCCCCHH------HHHHHHHHHH
Q ss_conf 89689999269999789999996468887----896567-78---889-853024687767938------9999999999
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELPRL----QGMDLK-ML---PFG-DLTQIGERGVNLSGG------QKQRIQLARA 536 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~~~----~G~Dl~-~l---p~G-d~T~iGe~G~~LSGG------QkqRIaLARA 536 (1255)
..+++.+.|++||||||+.+.|..++... .+..+. .+ ..+ +...-...+...... .+.....+.+
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98599998999999899999999972899699614102103444444166776541122202899999999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHH
Q ss_conf 703999789807678879998
Q 000845 537 LYQDRDIYLLDDPFSALDAKT 557 (1255)
Q Consensus 537 ly~~~~I~LLDdp~SalD~~~ 557 (1255)
+.......+.|+.........
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~~ 102 (178)
T d1qhxa_ 82 MARAGARIIIDDVFLGGAAAQ 102 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHH
T ss_pred HHHHCCCEEEEEEECCHHHHH
T ss_conf 874145427864201359999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.39 E-value=0.12 Score=25.01 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----88878965677--8889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. +.++.|.+... ..+|....+.- .. .+||..--.+.+..|++++.+++-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i--~d-~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI--LD-TAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEE--EE-CCC---CHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC-CCCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 999999899588999999972999865477534310111134543322223--34-456531234543114233166898
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 76788799989999---99999562-29958999826989
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~ 583 (1255)
- +.-|..+-+.+ +++..... ..+..+++|.+..+
T Consensus 83 ~--d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~D 120 (168)
T d1u8za_ 83 F--SITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp E--ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred E--ECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 5--2541134555899999999961889981899953642
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.34 E-value=0.06 Score=27.43 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=51.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEEE
Q ss_conf 899992699997899999964688878-965677888985302468776793899999999997------0399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQ-GMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARAL------YQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~-G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAl------y~~~~I~LLD 547 (1255)
.+.+.||+|+||||+..++..++.... +.+.-.+...+. .|...-|-...... -.+..|+++|
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iilid 116 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----------RGINVIREKVKEFARTKPIGGASFKIIFLD 116 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----------HHHHTTHHHHHHHHHSCCGGGCSCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC----------CCHHHHHHHHHHHHHHHHCCCCCCEEEEEH
T ss_conf 6999789997487999999999873146777158756766----------663488888888875100157872288614
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 767887999899999999956229958999826989412
Q 000845 548 DPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFLP 586 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l~ 586 (1255)
|.=...... ...+...+.........|++|++.+-+.
T Consensus 117 e~d~~~~~~--~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 117 EADALTQDA--QQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp TGGGSCHHH--HHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred HHHHCCHHH--HHHHHHHCCCCCCCEEEEECCCCHHHCH
T ss_conf 344312147--8987641124776447886148766565
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.33 E-value=0.044 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 49999948999489999998425889987899969
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG 1066 (1255)
..|.|+|++||||||+++.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.068 Score=26.99 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=14.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 508968999926999978999999646
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
+++|+++.|.|++|||||+|+.-++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 859979999958999999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.26 E-value=0.04 Score=28.76 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99992699997899999964
Q 000845 476 FAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llG 495 (1255)
++|+|+.||||||+.+.|.-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98989999998999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.24 E-value=0.049 Score=28.08 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|..|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.21 E-value=0.039 Score=28.86 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=49.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0896899992699997899999964688----878965677888985302468776793899999999997039997898
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP----RLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~----~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
++.-.++++|+.|+|||||++.+.|... +..+........++..... .--.|+...-..-+..+..++..++
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT----FDLGGHIQARRVWKNYLPAINGIVF 86 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEE----EEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCCCCC----CCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 777789999999989899999996788752240233432589743621122----3444004565677654023220112
Q ss_pred ECCCCCCCHH-HHHHHHHHHHH-HHCCCCEEEEECCCCC
Q ss_conf 0767887999-89999999995-6229958999826989
Q 000845 547 DDPFSALDAK-TAKFLFTEYVM-GALSKKTVLLVTHQVD 583 (1255)
Q Consensus 547 Ddp~SalD~~-~~~~i~~~~i~-~~l~~kTvIlvTH~~~ 583 (1255)
.-..+..+.. .....+..+.. ....++.++++-+..+
T Consensus 87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D 125 (186)
T d1f6ba_ 87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 453157420377899998751012357874699873247
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.18 E-value=0.06 Score=27.43 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8949999948999489999998425
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.16 E-value=0.17 Score=23.77 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6899992699997899999964688
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
-.++++|.+++|||||+++|.|.-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.15 E-value=0.052 Score=27.88 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
.|||+|++.+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.057 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96899992699997899999964688
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++++|+||+|+||+||++.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.052 Score=27.92 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.07 E-value=0.06 Score=27.39 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=56.0
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 68999926999978999999-646888789656778889853-0246877679389999999999703999789807678
Q 000845 474 EKFAICGEVGAGKSTLLAAI-LGELPRLQGMDLKMLPFGDLT-QIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFS 551 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~l-lGe~~~~~G~Dl~~lp~Gd~T-~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~S 551 (1255)
-.++++|..|+|||||++-+ .++..|+-|-+...+..++.+ .+.+ -|||+.--..-+..|.+++-+++=-..|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~~~D-----~~Gq~~~r~~w~~~~~~~~~ii~v~d~s 81 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFD-----VGGQRDERRKWIQCFNDVTAIIFVVASS 81 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEEEEE-----CCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEE-----CCCCCEECCCHHHHCCCCCCEEEEEECC
T ss_conf 77999989999889999989509827888867899997769999986-----3765122011234225665137999725
Q ss_pred CCCH-----------HHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 8799-----------9899999999956-2299589998269
Q 000845 552 ALDA-----------KTAKFLFTEYVMG-ALSKKTVLLVTHQ 581 (1255)
Q Consensus 552 alD~-----------~~~~~i~~~~i~~-~l~~kTvIlvTH~ 581 (1255)
+-|. .-....|+..+.. .+++..++++-+.
T Consensus 82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK 123 (221)
T d1azta2 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK 123 (221)
T ss_dssp GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEECH
T ss_conf 410132232105778998999999861754379838998204
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.04 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896899992699997899999964688
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
..+.+++++|++||||||+.+.|...+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.01 E-value=0.049 Score=28.14 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994899999984258
Q 000845 1034 IGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1034 vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
|.|+|||||||+||.+.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.00 E-value=0.24 Score=22.75 Aligned_cols=23 Identities=43% Similarity=0.481 Sum_probs=14.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94999994899948999999842
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
...+++||++|+||||.+-=|..
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999988999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.03 Score=29.82 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89689999269999789999996468
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+|..+.++|++||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.024 Score=30.55 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=56.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE-
Q ss_conf 8999926999978999999646-----88878965677--888985302468776793899999999997039997898-
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL- 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL- 546 (1255)
.++++|+.|+|||||++.+.+. +.++-|.|... +..++.+. --. .--.+||...-.+.+..|++++.+++
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~-~l~-i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFN-VWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCE-EEE-EEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCEECCHHCCCCCCHHHC
T ss_conf 999999999088999999984988854465300110001122223332-221-112346533000020011332110001
Q ss_pred ---ECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf ---07678879998999999999562299589998269894
Q 000845 547 ---DDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 547 ---Ddp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
+|+-|--. .+..+.+. .....+.-+++|.+..+.
T Consensus 83 ~d~~~~~Sf~~---~~~~~~~~-~~~~~~~piilvgnK~Dl 119 (170)
T d1i2ma_ 83 FDVTSRVTYKN---VPNWHRDL-VRVCENIPIVLCGNKVDI 119 (170)
T ss_dssp EETTSGGGGTT---HHHHHHHH-HHHHCSCCEEEEEECCCC
T ss_pred CCCCCCCCCCH---HHHHHHHH-HHCCCCCCEEEECCHHHH
T ss_conf 13221101002---67778887-640479723534465545
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.051 Score=27.96 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=49.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----88878965677--8889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. +.++.|.+... ...++... --. .--.+||...-.+-+..|++++++++=
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~-~~~-~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV-NLA-IWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEE-EEE-EEECCCC-------CCSSTTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEECCCCCCC-EEE-EECCCCCCEECCCCHHHCCCCCEEEEE
T ss_conf 999999999398999999982998864454200100001101378531-254-402688604510350000389666999
Q ss_pred CCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEECCCCC
Q ss_conf 767887999899999---999956229958999826989
Q 000845 548 DPFSALDAKTAKFLF---TEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i~---~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
++.-|+.+-+++- +...........++++.+..+
T Consensus 83 --~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~D 119 (167)
T d1z08a1 83 --YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 119 (167)
T ss_dssp --EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred --EECCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC
T ss_conf --8099556777554332200111123321245232102
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.84 E-value=0.24 Score=22.62 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1021146508968999926999978999999646888------7896567788898530246877679389999999999
Q 000845 463 LRNINLEVKPAEKFAICGEVGAGKSTLLAAILGELPR------LQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARA 536 (1255)
Q Consensus 463 L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~------~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARA 536 (1255)
.+.+-...++| ...++||.|+|||.|.++|.+|+.. ..|.++-. -.+|+ +-++.|--+..|
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~------~~~G~------~e~~~~~~f~~a 180 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS------GYNTD------FNVFVDDIARAM 180 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST------TCBCC------HHHHHHHHHHHH
T ss_pred HHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHH------CCCCH------HHHHHHHHHHHH
T ss_conf 98861436886-388877998508899999999863799808978268544------24445------789999999998
Q ss_pred HCCCCCEEEEECCCCCCCHH-------HHHHHHHHHH---HHH--CCCCEEEEECCCC
Q ss_conf 70399978980767887999-------8999999999---562--2995899982698
Q 000845 537 LYQDRDIYLLDDPFSALDAK-------TAKFLFTEYV---MGA--LSKKTVLLVTHQV 582 (1255)
Q Consensus 537 ly~~~~I~LLDdp~SalD~~-------~~~~i~~~~i---~~~--l~~kTvIlvTH~~ 582 (1255)
- .+.|+++||.-+..-.. ..+.++..++ .|+ .++.-+|-.||+.
T Consensus 181 ~--~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~ 236 (321)
T d1w44a_ 181 L--QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (321)
T ss_dssp H--HCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred H--HCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 6--2658974101222123456789874133451566520355667884999837976
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.84 E-value=0.06 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896899992699997899999964688
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++|..+.++|.+||||||+...|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.81 E-value=0.043 Score=28.57 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 68999926999978999999646888
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
+.++|+|..|||||||+..|+.++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.80 E-value=0.049 Score=28.08 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999948999489999998425
Q 000845 1034 IGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1034 vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
|||+|++++|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.09 Score=26.04 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-C----CCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999269999789999996468-8----878965677--8889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-P----RLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-~----~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||+..+.+.- . ++.|.+... +..+.. .+--. .--.+||..=-.+-+..|++++.+++-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~~~-~~d~~g~~~~~~~~~~~~~~~~~~ilv 85 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT-TVKFE-IWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEE-EEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE-EEEEE-ECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999994989999999859888543442022000000000214-78777-415787311005479986086658997
Q ss_pred CCCCCCCHHHHHHHHH--HHHHH-HCCCCEEEEECCCCC
Q ss_conf 7678879998999999--99956-229958999826989
Q 000845 548 DPFSALDAKTAKFLFT--EYVMG-ALSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~--~~i~~-~l~~kTvIlvTH~~~ 583 (1255)
++.-|..+-.++.. ..+.. ...+.-+++|.+..+
T Consensus 86 --~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D 122 (170)
T d1r2qa_ 86 --YDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp --EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred --ECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf --3250466778788876433203689845986324124
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.77 E-value=0.059 Score=27.46 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++|+|..+||||||+++|+|+=
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.25 Score=22.56 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 94999994899948999999842588998789996973
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD 1068 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~d 1068 (1255)
-..+.+||++|+||||.+-=|...+.-..-+|.+=..|
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 46 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 97999989999998999999999999779947998232
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.75 E-value=0.12 Score=25.17 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999948999489999998425
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.73 E-value=0.028 Score=29.98 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 46508968999926999978999999646
Q 000845 468 LEVKPAEKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 468 l~i~~G~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
+.-.+|..+-+.|.+||||||+.+.|.-.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 85899869999899999989999999988
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.096 Score=25.81 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=54.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----8887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++|+|..|+|||||++.+... +.++.|.... ...+|..-.+. -... +||..--.+....|++++.+++
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~--i~D~-~g~e~~~~~~~~~~~~a~~~il- 86 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG--LYDT-AGQEDYDRLRPLSYPMTDVFLI- 86 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEE--EECC-CCSSSSTTTGGGGCTTCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEEEE--CCCC-CCCCHHHHHHHHCCCCCCEEEE-
T ss_conf 99999999989999999996499987677713432468985079558752--0466-5420000112313442111211-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 76788799989999---999995622995899982698941
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~~~l 585 (1255)
.++.-|..+-+.+ +.+.+.....+...++|.+..+..
T Consensus 87 -v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 126 (185)
T d2atxa1 87 -CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126 (185)
T ss_dssp -EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf -1246357888878899999999607888706764244332
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.65 E-value=0.063 Score=27.23 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
||.++|++|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.074 Score=26.69 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=53.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-C----CCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999926999978999999646-8----8878965677---888985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-L----PRLQGMDLKM---LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-~----~~~~G~Dl~~---lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.+.+. . .++.+.+... ..++....+--- . .+||..--++.+..+++++.+++
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~--D-~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW--D-TAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEE--E-ECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEE--E-CCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99999999909999999997098886555331010256799716710158899--7-89833314657888652779999
Q ss_pred ECCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 076788799989-9999999956229958999826989
Q 000845 547 DDPFSALDAKTA-KFLFTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 547 Ddp~SalD~~~~-~~i~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
.--.+.-+.... ...+.........+..++++.+..+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D 121 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 99555405677776530111124687318999970344
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.62 E-value=0.073 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9499999489994899999984258899878
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGK 1061 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~ 1061 (1255)
+..|+|.|+.||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.15 Score=24.19 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992699997899999964
Q 000845 475 KFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llG 495 (1255)
.++++|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.54 E-value=0.26 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=21.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08968999926999978999999646
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
++.-.++++|..|||||||++.+.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.50 E-value=0.26 Score=22.36 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=14.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7489499999489994899999984258
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
++.|..+-|.|++||||||+...+....
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6675478980587652279999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.48 E-value=0.068 Score=27.01 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.061 Score=27.36 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCC
Q ss_conf 9999948999489999998425889987899969738999947864141787168755
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL 1090 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~L 1090 (1255)
.|||.|++||||||+.+.|...+..... + .-...+.+++||.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~-------~-------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV-------D-------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS-------C-------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC-------C-------CCCCCEEEEECCCCC
T ss_conf 9999899978799999999999641013-------4-------578843999346532
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.41 E-value=0.27 Score=22.30 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 974894999994899948999999842588
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.+++...+-+.||+|+|||++++++.+...
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.41 E-value=0.046 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6899992699997899999964688
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+.++|+|+.|||||||.+.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.083 Score=26.32 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=52.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999269999789999996468-----887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+++.- .++-|.... ...++..-.+. .--.+||...-.+.+..|++++++++-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~---~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLE---ILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEE---EEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEC---CCCCCCCCCCCCCHHHHHHCCCCEEEE
T ss_conf 99999989939999999997199987668861135533540476157621---345777512344427776153511566
Q ss_pred CCCCCCCHHHHHHHHH---HHHHHH-CCCCEEEEECCCCC
Q ss_conf 7678879998999999---999562-29958999826989
Q 000845 548 DPFSALDAKTAKFLFT---EYVMGA-LSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~---~~i~~~-l~~kTvIlvTH~~~ 583 (1255)
++.-|..+-..+-+ ...... ..+..+++|.+..+
T Consensus 82 --~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~D 119 (167)
T d1kaoa_ 82 --YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp --EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred --EEECCHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf --42135666540000046665530489998899997225
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.35 E-value=0.06 Score=27.39 Aligned_cols=24 Identities=46% Similarity=0.765 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|+||+||||+||.+.|+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.13 Score=24.77 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=50.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----8887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. +.++.|.... ...+|....+ . .--.+|+..--.+....+++++++++
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~--~-~~d~~g~~~~~~~~~~~~~~~~~~il- 82 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARL--D-ILDTAGQEEFGAMREQYMRTGEGFLL- 82 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEE--E-EEECC----CCHHHHHHHHHCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC--C-CCCCCCCCCCCCCCCCCCCCCCEEEE-
T ss_conf 8999999997999999999739988545766452000001001212111--2-21125653225454433424516899-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 76788799989999---99999562-29958999826989
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVD 583 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~ 583 (1255)
.++.-|+.+-..+ +....... .....+|+|.+..+
T Consensus 83 -v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~D 121 (171)
T d2erya1 83 -VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD 121 (171)
T ss_dssp -EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTT
T ss_pred -EECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf -604543443146788768887630357887799983020
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.31 E-value=0.2 Score=23.24 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999994899948999999842-----5889987
Q 000845 1033 KIGVVGRTGSGKTTLISALFR-----LVEPTGG 1060 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r-----l~~~~~G 1060 (1255)
||.++|..|+|||||++.+.. -|+|+.|
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999899588999999972999865477534
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.27 E-value=0.087 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089689999269999789999996468
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
|+|-.++++|+.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.26 E-value=0.075 Score=26.65 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++|+|...||||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.28 Score=22.12 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC--CCCEEEEECCCCHHHH
Q ss_conf 59993998668889999979999-99999874--9938998626911131
Q 000845 1163 RRRQILVLDEATASIDNATDSIL-QNTIRREF--ANCTVITVAHRIATVM 1209 (1255)
Q Consensus 1163 ~~~~ILiLDEaTS~lD~~te~~I-~~~l~~~~--~~~TvI~IaHrl~ti~ 1209 (1255)
.+..++++||.-++-+++-...+ ...++... ..+.+++.+|......
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 46608853222358774566678987645432045442898524687764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.15 E-value=0.079 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89999269999789999996
Q 000845 475 KFAICGEVGAGKSTLLAAIL 494 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~ll 494 (1255)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.12 E-value=0.074 Score=26.70 Aligned_cols=20 Identities=45% Similarity=0.703 Sum_probs=9.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999489994899999984
Q 000845 1033 KIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
.|||+|..||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.075 Score=26.63 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-C----CCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-8----887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-L----PRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-~----~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. . .++.+.+.. ....++.+.... +--.+||..--.+.+-.|.+++.+++=
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~--i~d~~g~~~~~~~~~~~~~~~~~~i~v 83 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFL--IWDTAGLERFRALAPMYYRGSAAAIIV 83 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEE--EEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 899999899499999999973988864465300121122111233321003--530477412457779987530545898
Q ss_pred CCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEECCCCCC
Q ss_conf 767887999899999---9999562299589998269894
Q 000845 548 DPFSALDAKTAKFLF---TEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 548 dp~SalD~~~~~~i~---~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
= +.-|+.+-..+- .........+.-+++|.+..+.
T Consensus 84 ~--d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 121 (167)
T d1z0ja1 84 Y--DITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121 (167)
T ss_dssp E--ETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred E--EECHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 6--3010245556777655544036886238996231101
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.06 E-value=0.075 Score=26.66 Aligned_cols=20 Identities=40% Similarity=0.805 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99994899948999999842
Q 000845 1034 IGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1034 vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|.|+|||||||+||.+.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.97 E-value=0.072 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+++++|.+||||||+.+.|...+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.049 Score=28.07 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=41.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 89999269999789999996468887896567788898530246877679389999999999703999789807678879
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD 554 (1255)
+++|.|+.|||||||...|.-.+....|.... -..+.-.+--++- ..|..||.+.-.+|- +.-=.+=.+-|
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~------v~~iS~DdfY~t~--~~r~~L~~~~~~~pl-~~~RG~PgThD 99 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS------IGYASIDDFYLTH--EDQLKLNEQFKNNKL-LQGRGLPGTHD 99 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSC------EEEEEGGGGBCCH--HHHHHHHHHTTTCGG-GSSSCSTTSBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC------EEEECCCCCCCCH--HHHHHHHHHCCCCCC-CEECCCCCCHH
T ss_conf 99837998788999999999999987277860------6763567777888--999998521355531-10047874034
Q ss_pred HHHHHHHHHHH
Q ss_conf 99899999999
Q 000845 555 AKTAKFLFTEY 565 (1255)
Q Consensus 555 ~~~~~~i~~~~ 565 (1255)
..-....+..+
T Consensus 100 ~~ll~~~l~~l 110 (286)
T d1odfa_ 100 MKLLQEVLNTI 110 (286)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 88999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.12 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97489499999489994899999984258
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
-+++|+.+-|.|++|||||++..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=0.07 Score=26.90 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-++++|++||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.93 E-value=0.3 Score=21.96 Aligned_cols=44 Identities=34% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89499999489994899999984258899878999697389999
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIG 1073 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~ 1073 (1255)
.+..+++||++|+||||.+-=|...+.-..-+|.+=..|.-..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 97799998999998899999999999977990799981366654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.91 E-value=0.19 Score=23.57 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=13.8
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 21125897489499999489994899999984
Q 000845 1021 LRGITCTFEGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1021 L~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
++.-.+.+ .|.-+.|.|+||+||||+...|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 78999999-99999998189999899999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.052 Score=27.87 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=49.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-C----CCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999269999789999996468-8----87896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-P----RLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-~----~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++|+|+.|+|||||+..+.+.- + ++.|.... .-.++..-.+. =-.. +||..--.+.+..|++++.++|
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~--i~D~-~g~~~~~~~~~~~~~~~~~~il- 79 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELA--LWDT-AGLEDYDRLRPLSYPDTDVILM- 79 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEE--EEEE-CCSGGGTTTGGGGCTTCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEE--CCCC-CCCCHHCCCCHHHCCCCHHHHH-
T ss_conf 99999989938899999997199988728822441122100354202450--2456-7640000030221031004434-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCC
Q ss_conf 76788799989999---999995622995899982698
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQV 582 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~ 582 (1255)
.++.=|+.+-..+ +...+.....+..++++.+..
T Consensus 80 -v~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~ 116 (177)
T d1kmqa_ 80 -CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 116 (177)
T ss_dssp -EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECG
T ss_pred -HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf -2021025788878887799999738997568866325
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.11 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97489499999489994899999984
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
-+++|+.+-|.|++||||||+..-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.0031 Score=37.51 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.1
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4102114650896899992699997899999964
Q 000845 462 TLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 462 ~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llG 495 (1255)
..++.++.+.+| +++|+|++||||||++.||.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.76 E-value=0.096 Score=25.81 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=13.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
..|.|+|+.||||||+.+.|..-|
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.068 Score=26.97 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=12.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9689999269999789999996468
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+++++|-|+.||||||+++.|...+
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998788877999999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.082 Score=26.35 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=49.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999269999789999996468-----887896567--78889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLK--MLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~--~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++|+|..|+|||||++.+++.- .++-|.... ...++....+. .--.+||..--.+-...|++++.++|
T Consensus 7 KivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~il- 82 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLG---LWDTAGQEDYDRLRPLSYPQTDVSLI- 82 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEE---EECCCCSGGGTTTGGGGCTTCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECEEEEEECCCCCEEEE---EECCCCCCCCHHHHHHCCCCCCEEEE-
T ss_conf 99999999979999999997498985446631100011000368634898---60354300100102212344551445-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCC
Q ss_conf 76788799989999---99999562299589998269
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQ 581 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~ 581 (1255)
.++.-|..+-..+ +...+.....+.-+++|-+.
T Consensus 83 -v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK 118 (183)
T d1mh1a_ 83 -CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118 (183)
T ss_dssp -EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEEC
T ss_pred -EECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf -203534788998999999999973899868998402
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.61 E-value=0.044 Score=28.49 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=39.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCH-HHHHHHHHHHHHCCCCCEEE
Q ss_conf 08968999926999978999999646888789656778889853----02468776793-89999999999703999789
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLT----QIGERGVNLSG-GQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T----~iGe~G~~LSG-GQkqRIaLARAly~~~~I~L 545 (1255)
|++ -+.++||+|||||.|.++|..++.. -+..+..+..+ ..|+.|..... +++++-++.+ ...+.|++
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~~~----~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~--~~~~~IIf 120 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLANA----PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDA--VEQNGIVF 120 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHHTC----CEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHH--HHHHCEEE
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHCCCC----CHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCC--CCCCCEEE
T ss_conf 986-6999899998888999998621322----1000344330101157641133333321233123200--35785688
Q ss_pred EECCCCCC
Q ss_conf 80767887
Q 000845 546 LDDPFSAL 553 (1255)
Q Consensus 546 LDdp~Sal 553 (1255)
+||.=++-
T Consensus 121 ~DEIdki~ 128 (309)
T d1ofha_ 121 IDEIDKIC 128 (309)
T ss_dssp EECGGGGS
T ss_pred EHHHHHHH
T ss_conf 42464540
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.56 E-value=0.11 Score=25.26 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4999994899948999999842588998789996
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~id 1065 (1255)
..+.|+|+.||||||+.+.|..-| |-+.|+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 289998999999899999999985----990885
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.22 Score=22.91 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999994899948999999842-----58899878
Q 000845 1033 KIGVVGRTGSGKTTLISALFR-----LVEPTGGK 1061 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r-----l~~~~~G~ 1061 (1255)
||.++|.+|+|||||++.+.. -+.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.089 Score=26.07 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=50.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCC--CCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999926999978999999646-----8887896567--7888985-302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLK--MLPFGDL-TQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~--~lp~Gd~-T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.+++. +.++.|.+.. .+..++. -.+. --..+| |..--.+.+..|.+++.+++
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~--i~d~~g-~~~~~~~~~~~~~~~~~~il 81 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFE--IWDTAG-QERFASLAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEE--EEEECC-SGGGGGGHHHHHTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCC-CHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999198999999972999865465301012023221111232234--555687-16678888888734650799
Q ss_pred ECCCCCCCHHHHHHHH---HHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0767887999899999---9999562299589998269894
Q 000845 547 DDPFSALDAKTAKFLF---TEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i~---~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
= ++.-|+.+-..+. ............++++.+..+.
T Consensus 82 v--~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~ 120 (170)
T d1ek0a_ 82 V--YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM 120 (170)
T ss_dssp E--EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred E--EECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 9--80784443034552021101333333202321002341
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.11 Score=25.43 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|+|+|++|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.46 E-value=0.02 Score=31.14 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++++|.+++|||||+++|.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.2 Score=23.33 Aligned_cols=107 Identities=20% Similarity=0.290 Sum_probs=53.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-C----CCCCCCCCC--CC---CCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 89999269999789999996468-8----878965677--88---898530246-----877679389999999999703
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-P----RLQGMDLKM--LP---FGDLTQIGE-----RGVNLSGGQKQRIQLARALYQ 539 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-~----~~~G~Dl~~--lp---~Gd~T~iGe-----~G~~LSGGQkqRIaLARAly~ 539 (1255)
.++++|+.|+|||||++.+.+.- . ++.+.+... .. .++.....+ -...-.+||..==++.+..|+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~ 86 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFR 86 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999919899999996199998647865403667899990100001346663588625557864566889999972
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCCCCC
Q ss_conf 9997898076788799989999999995622-----99589998269894
Q 000845 540 DRDIYLLDDPFSALDAKTAKFLFTEYVMGAL-----SKKTVLLVTHQVDF 584 (1255)
Q Consensus 540 ~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l-----~~kTvIlvTH~~~~ 584 (1255)
+++.+++ .++.-|+.+-..+. +...... .+.-+++|.+..+.
T Consensus 87 ~~~~~i~--v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl 133 (186)
T d2f7sa1 87 DAMGFLL--MFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADL 133 (186)
T ss_dssp TCCEEEE--EEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred CCCEEEE--EEECCCCCCCEEEE-ECCCHHHHHCCCCCCEEEEEEEECCC
T ss_conf 6988999--99632345411454-21120122136778429999631241
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.41 E-value=0.048 Score=28.15 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
||+++|++|+|||||++.|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.35 E-value=0.15 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.34 E-value=0.12 Score=25.11 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89689999269999789999996468
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+|.+++|-|.-||||||++..|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.30 E-value=0.091 Score=25.98 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.25 E-value=0.11 Score=25.44 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=40.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCC-----CCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 08968999926999978999999646888---7896567-----7888985-3024687767938999999999970399
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELPR---LQGMDLK-----MLPFGDL-TQIGERGVNLSGGQKQRIQLARALYQDR 541 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~~---~~G~Dl~-----~lp~Gd~-T~iGe~G~~LSGGQkqRIaLARAly~~~ 541 (1255)
.+...++|+|+.||||||+.+.|.-.+.. ..|.-+. ..+.|.. ...-+.|...+.-+-......|......
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG 83 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 89948999899999889999999999799267212688887510013324566676521232027899988877666532
Q ss_pred CEEEEECCC
Q ss_conf 978980767
Q 000845 542 DIYLLDDPF 550 (1255)
Q Consensus 542 ~I~LLDdp~ 550 (1255)
+=+++|.--
T Consensus 84 ~~~i~dg~p 92 (194)
T d1qf9a_ 84 KNFLVDGFP 92 (194)
T ss_dssp CCEEEETCC
T ss_pred CCEEEEECC
T ss_conf 875887300
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.18 E-value=0.099 Score=25.71 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 89999269999789999996468887896567788898530246877679389999999999703999789807678879
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD 554 (1255)
-+.+.||.|+||||+.+++.+++.. .+..+...+. -..|+ .....+-...+..|+++||.-. +.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~----~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~i~~iDe~~~-~~ 100 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV----NLRVTSGPAI---------EKPGD--LAAILANSLEEGDILFIDEIHR-LS 100 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC----CEEEEETTTC---------CSHHH--HHHHHHTTCCTTCEEEEETGGG-CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEEECCCCCC---------CCCHH--HHHHHHHHCCCCCEEEEECCCC-CC
T ss_conf 3898897998788899999998498----7475468753---------43214--6899885103887344311001-10
Q ss_pred HHHHHHH
Q ss_conf 9989999
Q 000845 555 AKTAKFL 561 (1255)
Q Consensus 555 ~~~~~~i 561 (1255)
......+
T Consensus 101 ~~~~~~l 107 (239)
T d1ixsb2 101 RQAEEHL 107 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 4478750
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.12 Score=24.91 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896899992699997899999964688
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++|.+++|.|+-||||||+...|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.08 E-value=0.13 Score=24.69 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=48.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCC--C-CCCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 89999269999789999996468-----8878965677--8-8898530---2468776793899999999997039997
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLKM--L-PFGDLTQ---IGERGVNLSGGQKQRIQLARALYQDRDI 543 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~~--l-p~Gd~T~---iGe~G~~LSGGQkqRIaLARAly~~~~I 543 (1255)
.++|+|+.|+|||||++.+.+.- .++.|.+... + .+|..-. ..- +||..=-++....|++++.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt------~G~e~~~~~~~~~~~~a~~ 81 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT------AGQERFRTITSSYYRGSHG 81 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECC------TTTTTTTCCCGGGGTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEC------CCCHHHHHHHHHHHCCCCE
T ss_conf 9999999990989999999619888872885432578999999657899999989------9854357899998325878
Q ss_pred EEEECCCCCCCHHHHHHHH--HHHHH-HHCCCCEEEEECCCCCC
Q ss_conf 8980767887999899999--99995-62299589998269894
Q 000845 544 YLLDDPFSALDAKTAKFLF--TEYVM-GALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 544 ~LLDdp~SalD~~~~~~i~--~~~i~-~~l~~kTvIlvTH~~~~ 584 (1255)
+++-=- .-|..+...+. ...+. ....+..++++.+..+.
T Consensus 82 ~i~v~d--~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 123 (194)
T d2bcgy1 82 IIIVYD--VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123 (194)
T ss_dssp EEEEEE--TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEE--CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 999996--762344566766445566404677539999721453
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.08 E-value=0.14 Score=24.61 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=14.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 748949999948999489999998
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISAL 1051 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L 1051 (1255)
+++|+.+-|.|++||||||+..-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 558879999858989889999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.08 E-value=0.11 Score=25.42 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 68999926999978999999646888
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
..+.++||.||||||+..+|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.09 Score=26.04 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=49.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999269999789999996468-----88789656--778889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDL--KMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl--~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|+.|+|||||+..+.+.- .++.|... ....+|+.-.+.- -. .+||..--++.+..|.+++.++|
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i--~D-~~g~~~~~~~~~~~~~~~~~~il- 80 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL--FD-TAGQEDYDRLRPLSYPQTDVFLV- 80 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEE--EE-ECCSGGGTTTGGGGCTTCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCEEEEEC--CC-CCCCHHHHHHHHHCCCCCCEEEC-
T ss_conf 999999999699999999971999987588310210025750794246502--44-44203232445422320102311-
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 76788799989999---99999562299589998269894
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
.++.-|..+-+.+ +.+.+.....+.-++++.+..+.
T Consensus 81 -v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl 119 (191)
T d2ngra_ 81 -CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119 (191)
T ss_dssp -EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGG
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf -411451889999999999987521799736877405444
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.96 E-value=0.11 Score=25.38 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=15.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 689999269999789999996468
Q 000845 474 EKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-+++|-|..||||||+++.|..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.17 Score=23.87 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.11 Score=25.31 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=32.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 9999948999489999998425889987899969738999947864141787168755777522
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVR 1096 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr 1096 (1255)
.|||.|++||||||+.+.|.....-..+ ..++.+|++|.+..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHH
T ss_conf 9999689999876899999999730468-----------------9965999521568984588
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.87 E-value=0.098 Score=25.73 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499999489994899999984258
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
-.|+|.|..||||||+++.|.+..
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.33 Score=21.56 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=47.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----88878965677--8889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|+.|+|||||++.+.+. +.++-|.+... ..+|..-.+. =.. .+||.+-. .-...|++++.+++
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~--i~D-~~g~~~~~-~~~~~~~~~~~~il- 78 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSME--ILD-TAGQEDTI-QREGHMRWGEGFVL- 78 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEE--EEE-CCCCCCCH-HHHHHHHHCSEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEE--EEE-CCCCCCCC-CCHHHHCCCCCCEE-
T ss_conf 99999989978999999997398987637731001112112466321788--851-11222234-43154336410001-
Q ss_pred CCCCCCCHHHHHHHHH--HHH--HHHCCCCEEEEECCCCCC
Q ss_conf 7678879998999999--999--562299589998269894
Q 000845 548 DPFSALDAKTAKFLFT--EYV--MGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 548 dp~SalD~~~~~~i~~--~~i--~~~l~~kTvIlvTH~~~~ 584 (1255)
+++.-|..+-..+-+ +.+ .....+..+++|.+..+.
T Consensus 79 -v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl 118 (168)
T d2atva1 79 -VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118 (168)
T ss_dssp -EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred -ECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHH
T ss_conf -0256886532445540011211113467522665141025
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.35 Score=21.42 Aligned_cols=104 Identities=22% Similarity=0.319 Sum_probs=45.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CCC-----CCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 899992699997899999964-688-----8789656778---8898530246877679389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILG-ELP-----RLQGMDLKML---PFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llG-e~~-----~~~G~Dl~~l---p~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|+.|+|||||+..+++ +.. +..|.+.... .+|..-.+. =.. -+||..--++-...++++++++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--i~D-t~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ--MWD-TAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEE--EEE-CCCC--------CCGGGCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECCCEEEEE--EEE-CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9999999992999999999719988654120230036777888548389999--998-9983666888898614786558
Q ss_pred EECCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8076788799989999---9999956229958999826989
Q 000845 546 LDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQVD 583 (1255)
Q Consensus 546 LDdp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~~~ 583 (1255)
+= ++.-|..+...+ +.+.....-....++++.+..+
T Consensus 85 ~v--~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d 123 (170)
T d2g6ba1 85 LL--YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123 (170)
T ss_dssp EE--EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCS
T ss_pred EE--ECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 98--6287555503455554554431587735999973303
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.71 E-value=0.11 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=22.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489499999489994899999984258
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
++.-||.+||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.63 E-value=0.081 Score=26.39 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|+||+||||+||.+.|+.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.59 E-value=0.13 Score=24.78 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.15 Score=24.29 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=14.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7489499999489994899999984
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
|++|+.+-|.|++|||||++..-+.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 7689799998899887889999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.51 E-value=0.19 Score=23.43 Aligned_cols=116 Identities=24% Similarity=0.275 Sum_probs=59.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 96899992699997899999964688878965677888985302468776793899999999997039997898076788
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSA 552 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~Sa 552 (1255)
.-.++|.|+.|+|||||+..+...+. ..|..+..+..--.+. ..|..+.|- |.|. .-+-.++.+++-..|+..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~-~~g~~vaViavDpss~--~~gg~llgd-r~rm---~~~~~~~~~~ir~~~~~~ 123 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSST--RTGGSILGD-KTRM---ARLAIDRNAFIRPSPSSG 123 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGG--SSCCCSSCC-GGGS---TTGGGCTTEEEECCCCCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCH--HHHHCCCCC-HHHH---HHHHCCCCEEECCCCCCC
T ss_conf 15986117998889999999999876-3687513443465547--877506410-1337---887503440112665345
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCC-C-----CCCCCCCEEEEEE
Q ss_conf 79998999999999562299589998269-8-----9412378899993
Q 000845 553 LDAKTAKFLFTEYVMGALSKKTVLLVTHQ-V-----DFLPAFDSILLIS 595 (1255)
Q Consensus 553 lD~~~~~~i~~~~i~~~l~~kTvIlvTH~-~-----~~l~~aD~Iivl~ 595 (1255)
-.......+.+....--..|.-+|+|..= . .....+|..+++.
T Consensus 124 ~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~ 172 (323)
T d2qm8a1 124 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172 (323)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEE
T ss_conf 3311067789999764148998589863233321466533665489986
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.47 E-value=0.14 Score=24.56 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|-||+||||||..+.|.-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.084 Score=26.25 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999994899948999999842588
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.40 E-value=0.047 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6899992699997899999964688
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
-+++|+|++||||||+.+.|...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989997809999999999971
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.39 E-value=0.12 Score=24.92 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=14.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
-++||||-.-+|||||+++|.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 3488889999988999999977
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.34 E-value=0.076 Score=26.62 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.31 E-value=0.17 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=15.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7489499999489994899999984
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
+++|+.+-|.|++|+|||++..-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6288599999179999899999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.21 E-value=0.14 Score=24.45 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4894999994899948999999842
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
++.-||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.15 E-value=0.16 Score=24.02 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896899992699997899999964688
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.+|.++++-|.-||||||+...|.-.+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9768999989988869999999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.13 E-value=0.14 Score=24.61 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++|+|++.+|||||+++|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.12 E-value=0.14 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.11 E-value=0.11 Score=25.27 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.+||..|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=0.0067 Score=34.90 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=27.5
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 02112589748949999948999489999998425
Q 000845 1020 VLRGITCTFEGGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1020 vL~~isl~I~~Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.+++.++.+.+| .+.|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.15 Score=24.34 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89999269999789999996
Q 000845 475 KFAICGEVGAGKSTLLAAIL 494 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~ll 494 (1255)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.02 E-value=0.15 Score=24.38 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|||+|+..+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.01 E-value=0.094 Score=25.88 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=14.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489499999489994899999984258
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+.+..|-|.|+.||||||+.+.|..-|
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.13 Score=24.79 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999994899948999999842588
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.85 E-value=0.15 Score=24.27 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.85 E-value=0.16 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.078 Score=26.52 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=52.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999926999978999999646-----88878965677--8889853024687767938999999999970399978980
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-----LPRLQGMDLKM--LPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLD 547 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-----~~~~~G~Dl~~--lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLD 547 (1255)
.++++|..|+|||||++.+.+. +.++-|.+... ..++....+- .--.+||...-++.+..|.+++.+++-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLE---ILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEE---EEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC---CCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 99999989989999999997098987558750211103688622688740---002467522344543112235535885
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCCC
Q ss_conf 76788799989999---99999562-299589998269894
Q 000845 548 DPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVDF 584 (1255)
Q Consensus 548 dp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~~ 584 (1255)
= +.-|+.+-+.+ ++...... .++..+|+|.+..+.
T Consensus 82 ~--d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl 120 (167)
T d1c1ya_ 82 Y--SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp E--ETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred E--ECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 2--10434666767999999988517889709999984375
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.067 Score=27.05 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999994899948999999842588
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.73 E-value=0.12 Score=25.00 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|.|.|+.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.72 E-value=0.16 Score=24.16 Aligned_cols=75 Identities=24% Similarity=0.307 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-C----CCCCCCCCCC--CC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999926999978999999646-8----8878965677--88-8985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGE-L----PRLQGMDLKM--LP-FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe-~----~~~~G~Dl~~--lp-~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.+.+. . .++-|.+... .. .+....+.- ---+|+..--...+..+.+++.+++
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~d~~g~~~~~~~~~~~~~~~~~~i~ 80 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI---WDTAGQERFQSLGVAFYRGADCCVL 80 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEE---EEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEE---EECCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 9999999991989999999719898873884341231001330893477776---4037864111211222467558998
Q ss_pred ECCCCC
Q ss_conf 076788
Q 000845 547 DDPFSA 552 (1255)
Q Consensus 547 Ddp~Sa 552 (1255)
.-..+.
T Consensus 81 ~~d~~~ 86 (184)
T d1vg8a_ 81 VFDVTA 86 (184)
T ss_dssp EEETTC
T ss_pred EECCCC
T ss_conf 302541
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.43 Score=20.71 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=53.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 6899992699997899999964688878965677888------------98530246877679389999999999703--
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPF------------GDLTQIGERGVNLSGGQKQRIQLARALYQ-- 539 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~------------Gd~T~iGe~G~~LSGGQkqRIaLARAly~-- 539 (1255)
..+.+.||.|+||+|+..++..++....+.+...... -|..++...+ -.+-..-|--+-.+.+.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~i~~ir~~~~~~~~~~~ 112 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--RTKVEDTRDLLDNVQYAPA 112 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTC--SSSHHHHHHHHHSCCCSCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHH--CCCHHHHHHHHHHHHHCCC
T ss_conf 05988889987589999999998468556666755542479999747987079961120--0789999999999974652
Q ss_pred --CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf --9997898076788799989999999995622995899982698941
Q 000845 540 --DRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 540 --~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l 585 (1255)
+..|+++||+=. +.......+ .+.+.....+...|++|++.+-+
T Consensus 113 ~~~~kviiIde~d~-l~~~~q~~L-lk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 113 RGRFKVYLIDEVHM-LSRHSFNAL-LKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SSSSEEEEEETGGG-SCHHHHHHH-HHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCCCEEEEEECCCC-CCHHHHHHH-HHHHHCCCCCEEEEEECCCCCCC
T ss_conf 59987999978110-899999999-99985689886999973885636
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=0.18 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4894999994899948999999842588
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
+.|-.|+|.|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.61 E-value=0.16 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.32 Score=21.72 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++++|..|+|||||++.+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.12 Score=25.11 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9499999489994899999984258899878999
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGGKIII 1064 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~i 1064 (1255)
.-+|||+|+.|+|||||+..|.+.+....-+|-+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3289743899998999999999999756983322
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.50 E-value=0.15 Score=24.37 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 894999994899948999999842588998789996973
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLD 1068 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~d 1068 (1255)
|+.-+.++||+|+|||.|+++|.+.... --+.+|+-+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCC
T ss_conf 9866999899998888999998621322--100034433
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.45 E-value=0.14 Score=24.46 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999269999789999996468
Q 000845 476 FAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
++++|+.||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=0.18 Score=23.69 Aligned_cols=116 Identities=14% Similarity=0.210 Sum_probs=51.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999489994899999984258899878999697389999478641417871687557775222156699999688984
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNLDPLSQFTDQEIWE 1112 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr~NLdp~~~~sd~ei~~ 1112 (1255)
+|.|+|+.||||||..+.|..-| |-..|+- -+-+|..+ .+....+.-.+.+.+.-.....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEECC
Q ss_conf 059525997624799999631386300007999889249999999999815999---3998668
Q 000845 1113 VTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQ---ILVLDEA 1173 (1255)
Q Consensus 1113 ~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~---ILiLDEa 1173 (1255)
.+... +........ .-+..+.+ | +.-.+.|...+.+.+-.... ++++|.+
T Consensus 69 ------~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 ------LLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp ------HHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred ------HHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf ------88876-412100011-24511101-1--030489999986442105543389962476
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.36 E-value=0.18 Score=23.59 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99992699997899999964
Q 000845 476 FAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llG 495 (1255)
++|+|+.||||||+...|.-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999998999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.32 E-value=0.2 Score=23.33 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
-++|+|++.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.24 E-value=0.19 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.17 E-value=0.18 Score=23.63 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
|++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.17 E-value=0.25 Score=22.55 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 249999999999815999--39986688899999799999999987499389986269
Q 000845 1149 MGQRQLIGLGRVVLRRRQ--ILVLDEATASIDNATDSILQNTIRREFANCTVITVAHR 1204 (1255)
Q Consensus 1149 gGQrQrl~lARAlL~~~~--ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHr 1204 (1255)
..+.+...+++..++++. |+.+..++..........+.+.+... ..+|++++++-
T Consensus 152 ~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 5899999999999827775168763256310034999999973867-88589998204
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.17 E-value=0.036 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.17 E-value=0.17 Score=23.90 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
=||.+||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.13 E-value=0.19 Score=23.56 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.03 E-value=0.33 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=16.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50896899992699997899999964
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~llG 495 (1255)
.-.|.-+.++|++|+||||+...+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999980899998999999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.99 E-value=0.19 Score=23.53 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.99 E-value=0.19 Score=23.55 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89999269999789999996
Q 000845 475 KFAICGEVGAGKSTLLAAIL 494 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~ll 494 (1255)
+++|+|+.||||||+...|-
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.26 Score=22.40 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=9.4
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 8999926999978999999
Q 000845 475 KFAICGEVGAGKSTLLAAI 493 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~l 493 (1255)
.++++|..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.90 E-value=0.14 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50896899992699997899999964688
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++++..+.+.|+.||||||+.+.|.-.+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 46782899989999987999999999869
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.87 E-value=0.18 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+-..++|+|+.||||||+...|...+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 972899989999998999999999859
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=87.71 E-value=0.17 Score=23.89 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
.|-++|+.||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 889988999988999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.65 E-value=0.14 Score=24.64 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=23.3
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 11465089689999269999789999996468
Q 000845 466 INLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 466 inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+|+.-.+...++++||+|+||||.+.-|.-.+
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76799999899998999998899999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.22 Score=23.00 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.59 E-value=0.28 Score=22.20 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 65089689999269999789999996468
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-+|+|+++.|.|+.|||||+|..-++-..
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699699998389998899999999986
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.21 Score=23.21 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=48.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-----CCCCCCC--CCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899992699997899999964688-----8789656--778889853-02468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP-----RLQGMDL--KMLPFGDLT-QIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~-----~~~G~Dl--~~lp~Gd~T-~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|+.|+|||||++.+++.-. +..+.+. ..+...+.. .+. -...+|..+ =-.+-.+.|++++++++
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~d~~g~e~-~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ--IWDTAGQER-YRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEE--EEECSSGGG-TTCCCHHHHTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEE--ECCCCCCHH-HHHHHHHHHHCCCEEEE
T ss_conf 999999999098999999982998876565532103557999999888998--425687377-88888977540675899
Q ss_pred ECCCCCCCHHHHHHHHH---HHHHHHCCCCEEEEECCCCCC
Q ss_conf 07678879998999999---999562299589998269894
Q 000845 547 DDPFSALDAKTAKFLFT---EYVMGALSKKTVLLVTHQVDF 584 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i~~---~~i~~~l~~kTvIlvTH~~~~ 584 (1255)
- ++.-|+.+-..+.+ ........+.-+++|.+..+.
T Consensus 83 v--~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl 121 (175)
T d2f9la1 83 V--YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121 (175)
T ss_dssp E--EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred E--EECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 9--97888654034788999999845899839999765154
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.51 E-value=0.22 Score=23.00 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.28 E-value=0.26 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.+..++|.|+.|+|||||+..++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.24 Score=22.70 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 68999926999978999999646888
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
....+.||+|+||||++.++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.11 E-value=0.2 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=18.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 650896899992699997899999964688
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
..++|.++.+.|+.|||||||.+.++..+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 579982999966877658899999876422
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.10 E-value=0.24 Score=22.70 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999948999489999998425
Q 000845 1033 KIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
.|||.|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.22 Score=23.04 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|.+|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=0.23 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
+|.|+|+.||||||+.+.|..-+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=0.26 Score=22.42 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999994899948999999842588
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|..|.|-|.-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.91 E-value=0.22 Score=23.04 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++|+|...+|||||++++.+.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.27 Score=22.27 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 894999994899948999999842588
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
+|..|+|-|.-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.84 E-value=0.54 Score=19.90 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=34.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 99939986688899999799999999987499389986269111311
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD 1210 (1255)
Q Consensus 1164 ~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~ 1210 (1255)
+.+++++||+- .+.......+...+.+..+.+.++++++....+..
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~ 144 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 144 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH
T ss_conf 71899996632-00023789999886311200232012670877599
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.82 E-value=0.24 Score=22.71 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.+||.+|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.82 E-value=0.21 Score=23.15 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
-++++|++++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.72 E-value=0.22 Score=23.05 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|.|+.||||||+...|.-.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999998999999999879
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.68 E-value=0.41 Score=20.84 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=11.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 489499999489994899999984
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
-.|.-|.|+|+||+||||+...|.
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 999999998089999999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.61 E-value=0.25 Score=22.53 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.60 E-value=0.24 Score=22.73 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCC--CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 89999269999789999996468-----887896567--788898530-2468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLK--MLPFGDLTQ-IGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~--~lp~Gd~T~-iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.++++- .++.|.+.. .+..++.+. +-- .. .+||..--.+....|++++.+++
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i--~D-t~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI--WD-TAGQERFRTITTAYYRGAMGIIL 80 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEE--EC-CTTGGGTSCCCHHHHTTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEE--EE-CCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999996789999999868898763774230378999998898999999--98-99955568999999734989999
Q ss_pred ECCCCCCCHHHHH
Q ss_conf 0767887999899
Q 000845 547 DDPFSALDAKTAK 559 (1255)
Q Consensus 547 Ddp~SalD~~~~~ 559 (1255)
= ++.-|+++..
T Consensus 81 v--~d~~~~~s~~ 91 (166)
T d1g16a_ 81 V--YDITDERTFT 91 (166)
T ss_dssp E--EETTCHHHHH
T ss_pred E--EECCCCCCHH
T ss_conf 9--9899765799
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.23 Score=22.78 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
||.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.26 Score=22.44 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.26 Score=22.40 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.+||..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.33 E-value=0.25 Score=22.56 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6899992699997899999964688
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++++|.|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.28 E-value=0.12 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 68999926999978999999646888
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
++++|-|..||||||+++.|--.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.26 E-value=0.3 Score=21.89 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=30.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
Q ss_conf 48949999948999489999998425889--9878999697389
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVEP--TGGKIIIDGLDIT 1070 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~--~~G~I~idG~di~ 1070 (1255)
++|..|-+.|.+||||||+.+.|...+.. ..-.+.+||-+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.23 E-value=0.42 Score=20.80 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 968999926999978999999646888789
Q 000845 473 AEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 473 G~l~~ivG~~GsGKSTLl~~llGe~~~~~G 502 (1255)
...+.++||.|+|||++++.+..++....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.20 E-value=0.21 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2114650896899992699997899999964688
Q 000845 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 465 ~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
|.=+.+-+|+...|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.18 E-value=0.31 Score=21.81 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999489994899999984258
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
.-+|||+|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.16 E-value=0.38 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9748949999948999489999998
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISAL 1051 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L 1051 (1255)
-+++|+.+-|.|++|+|||++..-+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 9969839999947999999999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.39 Score=21.01 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=28.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9748949999948999489999998425889987-89996973
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGG-KIIIDGLD 1068 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G-~I~idG~d 1068 (1255)
-|++|..+-|.|++||||||+...+.....-..| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.14 E-value=0.2 Score=23.38 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|.++|..||||||+.+.|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=86.13 E-value=0.58 Score=19.64 Aligned_cols=26 Identities=35% Similarity=0.290 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999994899948999999842588
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
...+.+||++|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.06 E-value=0.28 Score=22.21 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|+.|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.91 E-value=0.29 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4999994899948999999842588998789996
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~id 1065 (1255)
..|||+|.-||||||+.+.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.86 E-value=0.13 Score=24.74 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCC
Q ss_conf 9999948999489999998425889987899969738999947864141787168755
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTL 1090 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~L 1090 (1255)
.|||.|.|||||||+.+.|...+... | -+.++|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.82 E-value=0.31 Score=21.84 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|.||.||||||+.+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.80 E-value=0.35 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
||.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=85.78 E-value=0.19 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.+.|.|..||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.28 Score=22.21 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.75 E-value=0.39 Score=21.05 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6508968999926999978999999646
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
-+|+|+++.|.|++|||||+|..-++-.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9558879999858989889999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.74 E-value=0.35 Score=21.43 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 49999948999489999998425889987899969
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDG 1066 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG 1066 (1255)
.-+-++||+||||||++++|.+.+. .+-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 7999889799889999999999865--15489832
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.72 E-value=0.34 Score=21.48 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=26.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 65089689999269999789999996468
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-+|+|+++.|.|++|||||++...++.+.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97689799998899887889999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.64 E-value=0.32 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89499999489994899999984258
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
.+..+.|+|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.62 E-value=0.4 Score=20.96 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=26.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50896899992699997899999964688
Q 000845 470 VKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 470 i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+++|+++.|.|+.|+|||+++.-+.-...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 62885999991799998999999999998
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.62 E-value=0.21 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68999926999978999999646
Q 000845 474 EKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
..+.|+|++|||||+++..++-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.59 E-value=0.29 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999926999978999999646888
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPR 499 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~ 499 (1255)
=+.++||+|||||-|.+.|.+++..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V 75 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA 75 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 4799899998899999999987389
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.53 E-value=0.62 Score=19.43 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=47.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-CC----CCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 899992699997899999964-68----88789656778889853024687767----9389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILG-EL----PRLQGMDLKMLPFGDLTQIGERGVNL----SGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llG-e~----~~~~G~Dl~~lp~Gd~T~iGe~G~~L----SGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|..|+|||||+..++. +. .++-|.+.... ..++.....+ .+||..--.+.+..|+++++++
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~-----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 78 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-----FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 78 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-----EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCC-----CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999598999999972999986587201011221-----025644776213332211112335541000123443
Q ss_pred EECCCCCCCHHHHHHH---HHHHHHHHCCCCEEEEECCC
Q ss_conf 8076788799989999---99999562299589998269
Q 000845 546 LDDPFSALDAKTAKFL---FTEYVMGALSKKTVLLVTHQ 581 (1255)
Q Consensus 546 LDdp~SalD~~~~~~i---~~~~i~~~l~~kTvIlvTH~ 581 (1255)
| .++.-|..+-+.+ +...+.....+.-+++|.+.
T Consensus 79 l--v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK 115 (179)
T d1m7ba_ 79 I--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 115 (179)
T ss_dssp E--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEEC
T ss_pred E--EEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 0--230346777999988788887404885169998740
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.31 Score=21.75 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|+.|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.44 E-value=0.31 Score=21.83 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=0.29 Score=22.04 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=29.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 46508968999926999978999999646888789
Q 000845 468 LEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 468 l~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G 502 (1255)
=-+++|.++.+.|+.|||||||+..+........|
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~ 83 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 83 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99667358998057774789999999999870898
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.42 E-value=0.33 Score=21.59 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|-|.|+.||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.40 E-value=0.31 Score=21.78 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+++|-|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.39 E-value=0.3 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999489994899999984258
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.28 E-value=0.4 Score=20.90 Aligned_cols=24 Identities=46% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|||+|...+|||||++.|.+...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.27 E-value=0.64 Score=19.34 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=52.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999269999789999996468-----8878965677888985302468776----79389999999999703999789
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-----PRLQGMDLKMLPFGDLTQIGERGVN----LSGGQKQRIQLARALYQDRDIYL 545 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-----~~~~G~Dl~~lp~Gd~T~iGe~G~~----LSGGQkqRIaLARAly~~~~I~L 545 (1255)
.++++|..|+|||||++.+++.- .++.|.+.... ..+...... =.+||..--++.+..|++++.++
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l 80 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH-----TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 80 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEE-----EEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEE
T ss_conf 999999899598999999970988854576312010111-----123553220122012464232211244530033899
Q ss_pred EECCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCCC
Q ss_conf 8076788799989999---99999562-299589998269894
Q 000845 546 LDDPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVDF 584 (1255)
Q Consensus 546 LDdp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~~ 584 (1255)
+ .++.-|..+-..+ +.+..+.. ..+..+|++.+..+.
T Consensus 81 l--v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl 121 (169)
T d1x1ra1 81 I--VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 121 (169)
T ss_dssp E--EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred E--ECCCCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 8--3210100234322024677876314567638998436546
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.25 E-value=0.32 Score=21.72 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.+||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.33 Score=21.62 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
.|||+|..||||||+.+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.14 E-value=0.28 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 689999269999789999996468
Q 000845 474 EKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
+.++++|+.||||||+.+.|.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.10 E-value=0.24 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999994899948999999842588
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
-.|+|-||.||||||+.+.|..-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.01 E-value=0.27 Score=22.30 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 650896899992699997899999964688
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
..|++..+.++||.|+|||++..+|.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.35 Score=21.37 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++|.|+.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.93 E-value=0.31 Score=21.79 Aligned_cols=29 Identities=38% Similarity=0.544 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999994899948999999842588998789996
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~id 1065 (1255)
.|.|+|++||||||+.+.|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.87 E-value=0.34 Score=21.51 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.87 E-value=0.23 Score=22.79 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=49.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6899992699997899999964688----878965677888985302468776793899999999997039997898076
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELP----RLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~----~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
-.++++|+.|+|||||++.+.+.-. ++.|........++.+ +. -... |||.+--++.+..|.+++..++=--
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~-~~--i~D~-~g~~~~~~~~~~~~~~~~~ii~v~d 93 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK-LN--VWDL-GGQTSIRPYWRCYYADTAAVIFVVD 93 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEE-EE--EEEE-C----CCTTGGGTTTTEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEE-EE--EEEC-CCCCCCCHHHHHHHCCCEEEEEEEE
T ss_conf 899999999998899998873387776433065479999638899-99--9955-6420011457765134406888864
Q ss_pred CCCCC-HHHHHHHHHHHHHH-HCCCCEEEEECCCCC
Q ss_conf 78879-99899999999956-229958999826989
Q 000845 550 FSALD-AKTAKFLFTEYVMG-ALSKKTVLLVTHQVD 583 (1255)
Q Consensus 550 ~SalD-~~~~~~i~~~~i~~-~l~~kTvIlvTH~~~ 583 (1255)
.+..+ .......+.+.+.. ...+.-++++.+..+
T Consensus 94 ~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~D 129 (182)
T d1moza_ 94 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 129 (182)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 112211025899999987753147762699999625
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.86 E-value=0.32 Score=21.66 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=0.3 Score=21.97 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 689999269999789999996468
Q 000845 474 EKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
..++|+|+.++|||+||+.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.33 Score=21.64 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC-C----CCCCCCCC--CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 89999269999789999996468-8----87896567--788-8985302468776793899999999997039997898
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL-P----RLQGMDLK--MLP-FGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLL 546 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~-~----~~~G~Dl~--~lp-~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LL 546 (1255)
.++++|..|+|||||++.+.+.- . ++.+ |.. .+. +|..-.+ . .-=.+||...-.+....|++++++++
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l--~-~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARL--D-ILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEE--E-EEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCEEEEE--E-CCCCCCCCCCCCCCCHHHCCCEEEEE
T ss_conf 999999799698999999973999710034411-1002575039833001--0-12124553223452112012003456
Q ss_pred ECCCCCCCHHHHHHH---HHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 076788799989999---99999562-29958999826989
Q 000845 547 DDPFSALDAKTAKFL---FTEYVMGA-LSKKTVLLVTHQVD 583 (1255)
Q Consensus 547 Ddp~SalD~~~~~~i---~~~~i~~~-l~~kTvIlvTH~~~ 583 (1255)
= ++.-|..+-..+ +....... ..+.-+|+|.+..+
T Consensus 84 v--~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~D 122 (173)
T d2fn4a1 84 V--FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122 (173)
T ss_dssp E--EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred E--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 4--01144566202231247999872567886599998406
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=84.76 E-value=0.37 Score=21.22 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.++|+|+.||||||+...|.-.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=84.71 E-value=0.23 Score=22.85 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=49.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 689999269999789999996468887----8965677888985302468776793899999999997039997898076
Q 000845 474 EKFAICGEVGAGKSTLLAAILGELPRL----QGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDP 549 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe~~~~----~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp 549 (1255)
=.++++|+.|+|||||++.+.+..... .|.+.......+.. + . .-=.|||.+.-...+..|.+++.+++=-.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~-~--~-i~D~~g~~~~~~~~~~~~~~~~~ii~v~D 88 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVK-F--N-VWDVGGQDKIRPLWRHYYTGTQGLIFVVD 88 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEE-E--E-EEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCEE-E--E-EECCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 799999999987899999984488887432132567775035244-4--7-86279861014677765126624899984
Q ss_pred CCCCCHHH-HHHHHHHHHHH-HCCCCEEEEECCCCC
Q ss_conf 78879998-99999999956-229958999826989
Q 000845 550 FSALDAKT-AKFLFTEYVMG-ALSKKTVLLVTHQVD 583 (1255)
Q Consensus 550 ~SalD~~~-~~~i~~~~i~~-~l~~kTvIlvTH~~~ 583 (1255)
.+..+... ...-+...+.. ...+.-++++.+..+
T Consensus 89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~D 124 (173)
T d1e0sa_ 89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQD 124 (173)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 154221789999999875301466651311210135
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.33 Score=21.56 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
-||.++|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.36 Score=21.31 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.57 E-value=0.34 Score=21.48 Aligned_cols=97 Identities=19% Similarity=0.316 Sum_probs=50.3
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCC----C---CCCC---------------C--CCCCCCCCCCCCCC-CCCHH
Q ss_conf 89999269999789999996---4688878----9---6567---------------7--88898530246877-67938
Q 000845 475 KFAICGEVGAGKSTLLAAIL---GELPRLQ----G---MDLK---------------M--LPFGDLTQIGERGV-NLSGG 526 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~ll---Ge~~~~~----G---~Dl~---------------~--lp~Gd~T~iGe~G~-~LSGG 526 (1255)
-++|+|++|||||||..+|+ |...+.. | .|.. . +.+.-.+.+.--|. ..+|-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e 87 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE 87 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHH
T ss_conf 99999589899899999999964853402336518469856588875188600112343159838999527860226999
Q ss_pred HHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 999999999970-39997898076788799989999999995622995899982698
Q 000845 527 QKQRIQLARALY-QDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQV 582 (1255)
Q Consensus 527 QkqRIaLARAly-~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~ 582 (1255)
-. ||+- .|..|++. |+..++.++|. .+|+.|- .++.-+|++-|.+
T Consensus 88 ~~------~~l~~~D~avlVv-da~~Gv~~~T~-~~w~~a~---~~~lP~i~fINKm 133 (276)
T d2bv3a2 88 VE------RSMRVLDGAIVVF-DSSQGVEPQSE-TVWRQAE---KYKVPRIAFANKM 133 (276)
T ss_dssp HH------HHHHHCCEEEEEE-ETTTSSCHHHH-HHHHHHH---TTTCCEEEEEECT
T ss_pred HH------HHHHHHHHEEEEC-CCCCCCCHHHH-HHHHHHH---HCCCCEEEEEECC
T ss_conf 99------9999630057732-25677446699-9999999---8599979998644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.45 E-value=0.39 Score=21.00 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.44 E-value=0.35 Score=21.42 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=0.41 Score=20.86 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||+.-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.19 E-value=0.71 Score=19.00 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999269999789999996468
Q 000845 476 FAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
..+.||.|+||+|+...+..++
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9888999875999999999821
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.12 E-value=0.39 Score=21.05 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.11 E-value=0.39 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.|+|..|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.93 E-value=0.47 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 08968999926999978999999646888789
Q 000845 471 KPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 471 ~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G 502 (1255)
+++..++++|++|+||||.+.=|.-.+. ..|
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g 34 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG 34 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC
T ss_conf 9977999989999988999999999999-779
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.84 E-value=0.4 Score=20.90 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.79 E-value=0.35 Score=21.36 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
-++|+|++.+|||||+..|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89999588980999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.75 E-value=0.37 Score=21.21 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99992699997899999964688
Q 000845 476 FAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
++++|+.||||||+.+.|...+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.74 E-value=0.25 Score=22.48 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
|+.++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=83.74 E-value=0.47 Score=20.38 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=27.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 748949999948999489999998425889987899969738
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGKIIIDGLDI 1069 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~idG~di 1069 (1255)
+++...+-+.||.|+|||++++++.+.+... -+.+++-++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 9988867866899888228999999982998--799886994
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.56 E-value=0.32 Score=21.67 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=51.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCC---C-----------C---CCCC----------------C---------CCCCCC
Q ss_conf 9999269999789999996468887---8-----------9---6567----------------7---------888985
Q 000845 476 FAICGEVGAGKSTLLAAILGELPRL---Q-----------G---MDLK----------------M---------LPFGDL 513 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~~~~---~-----------G---~Dl~----------------~---------lp~Gd~ 513 (1255)
++++|++.+|||||+..|+...... . | ..+. . ..+..-
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 91 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKF 91 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCEEE
T ss_conf 99993789898999999999869835678899998898628654412210014641344315877315578984152379
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 302468776793899999999997039997898076788799989999999995622995899982698941
Q 000845 514 TQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALDAKTAKFLFTEYVMGALSKKTVLLVTHQVDFL 585 (1255)
Q Consensus 514 T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD~~~~~~i~~~~i~~~l~~kTvIlvTH~~~~l 585 (1255)
+.|...|..-.-.. .++-+-..|.-|++.| +..++-+++.+++. +...+.=+.+|++-+..+..
T Consensus 92 ~iiD~PGH~dfv~~----~~~g~~~aD~ailVvd-a~~G~~~Qt~e~~~---~~~~~gv~~iiv~vNK~D~~ 155 (222)
T d1zunb3 92 IIADTPGHEQYTRN----MATGASTCDLAIILVD-ARYGVQTQTRRHSY---IASLLGIKHIVVAINKMDLN 155 (222)
T ss_dssp EEEECCCSGGGHHH----HHHHHTTCSEEEEEEE-TTTCSCHHHHHHHH---HHHHTTCCEEEEEEECTTTT
T ss_pred EEEECCCHHHHHHH----HCCCCCCCCEEEEEEC-CCCCCCCCHHHHHH---HHHHCCCCEEEEEEECCCCC
T ss_conf 99816632554333----2146655766898720-45676633389999---99983998799998700145
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.42 Score=20.77 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++-+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.53 E-value=0.39 Score=20.99 Aligned_cols=175 Identities=22% Similarity=0.283 Sum_probs=90.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCCEEECCCCC-CCCCCHHHHC-C-CCC-CCC
Q ss_conf 99999489994899999984258--8998789996973899994786414178716875-5777522215-6-699-999
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLV--EPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPT-LFSGSVRYNL-D-PLS-QFT 1106 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~--~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~-LF~gTIr~NL-d-p~~-~~s 1106 (1255)
.|||+|..|+|||||+..|+..- ....|++. +|....+....+-.+.+++-+.-.. .++| .+-|+ | |+. ++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHH
Q ss_conf 6889840595259976247999996313863000079998892499999999998159993998---6688899999799
Q 000845 1107 DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL---DEATASIDNATDS 1183 (1255)
Q Consensus 1107 d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiL---DEaTS~lD~~te~ 1183 (1255)
.+-. . ++..+. +-=-.|+ .-.....+-++.+-.|+.. +.|.++++ |.+ + |.. +
T Consensus 82 ~e~~-~------al~~~D----------~avlvvd-a~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~ 137 (267)
T d2dy1a2 82 GEIR-G------ALEAAD----------AALVAVS-AEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--A 137 (267)
T ss_dssp HHHH-H------HHHHCS----------EEEEEEE-TTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--H
T ss_pred HHHH-H------HHCCCC----------CEEEEEE-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--H
T ss_conf 5565-4------312467----------3389842-3577421157887765540-44310133320222--2-101--2
Q ss_pred HHHHHHHHHCCCCEEEEEC----CCCHHHHH--CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9999999874993899862----69111311--198999959879897693388621
Q 000845 1184 ILQNTIRREFANCTVITVA----HRIATVMD--CNMVLSMSDGKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1184 ~I~~~l~~~~~~~TvI~Ia----Hrl~ti~~--~DrI~vl~~G~ive~g~~~~Ll~~ 1234 (1255)
.+ +.+++.+....-+.+- .....+.+ ..+.+..++|.-.+..-|.++.+.
T Consensus 138 ~l-~~~~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 138 LL-EDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HH-HHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HH-HHHHHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHH
T ss_conf 34-468887465867686002588326876247654899618987454077778999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.52 E-value=0.45 Score=20.54 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94999994899948999999842588
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.-++.|+|+.||||||+.+.|..-|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.32 E-value=0.57 Score=19.73 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=27.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9748949999948999489999998425889
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEP 1057 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~ 1057 (1255)
..+||..+.+.|.=||||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.31 E-value=0.32 Score=21.72 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.25 E-value=0.53 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.22 E-value=0.46 Score=20.49 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=83.17 E-value=0.67 Score=19.18 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 84102114650896899992699997899999964
Q 000845 461 PTLRNINLEVKPAEKFAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 461 ~~L~~inl~i~~G~l~~ivG~~GsGKSTLl~~llG 495 (1255)
..++..-+.+ .|.=+.+.|++|+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.14 E-value=0.44 Score=20.63 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++++|+.||||||....|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.12 E-value=0.42 Score=20.80 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8949999948999489999998425
Q 000845 1030 GGHKIGVVGRTGSGKTTLISALFRL 1054 (1255)
Q Consensus 1030 ~Ge~vaIVGrsGsGKSTL~~~L~rl 1054 (1255)
|.=.|||+|+.++|||||+..|+..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9719999947898499999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.01 E-value=0.5 Score=20.19 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=27.3
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 211465089689999269999789999996468
Q 000845 465 NINLEVKPAEKFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 465 ~inl~i~~G~l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
|.-+.+-+|+...|.|+.|+|||+|+.-+..-.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 102563678877766799989899999999988
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.99 E-value=0.33 Score=21.60 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 4999994899948999999842-----58899878-----9996973
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR-----LVEPTGGK-----IIIDGLD 1068 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r-----l~~~~~G~-----I~idG~d 1068 (1255)
-||.|+|..|+|||||++.+.. .+.|+.|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.98 E-value=0.43 Score=20.71 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99992699997899999964
Q 000845 476 FAICGEVGAGKSTLLAAILG 495 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llG 495 (1255)
++|+|++++|||||+..|+.
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994479999999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.96 E-value=0.47 Score=20.40 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.82 E-value=0.26 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.71 E-value=0.47 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9499999489994899999984258
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
=-.|+|+|+.++|||||++.|++..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.69 E-value=0.48 Score=20.33 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=82.50 E-value=0.35 Score=21.36 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=42.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 89999269999789999996468887896567788898530246877679389999999999703999789807678879
Q 000845 475 KFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLARALYQDRDIYLLDDPFSALD 554 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLARAly~~~~I~LLDdp~SalD 554 (1255)
.+.++||.|+||||+.+++..++....+ .+...+. ...+...++ ........++.+||+-. ++
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~----~~~~~~~---------~~~~~~~~~---~~~~~~~~~~~ide~~~-~~ 99 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH----VTSGPVL---------VKQGDMAAI---LTSLERGDVLFIDEIHR-LN 99 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE----EEETTTC---------CSHHHHHHH---HHHCCTTCEEEEETGGG-CC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCC---------CCHHHHHHH---HHHHCCCCCHHHHHHHH-HH
T ss_conf 4898799997388999999850388853----3257442---------248889999---87543588247778988-40
Q ss_pred HHHHHH
Q ss_conf 998999
Q 000845 555 AKTAKF 560 (1255)
Q Consensus 555 ~~~~~~ 560 (1255)
......
T Consensus 100 ~~~~~~ 105 (238)
T d1in4a2 100 KAVEEL 105 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 677764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.36 E-value=0.45 Score=20.54 Aligned_cols=176 Identities=15% Similarity=0.199 Sum_probs=82.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCCEEECCCCCCCCCCHHHHC-C-CCC-CCC
Q ss_conf 999994899948999999842---5889987899969738999947864141787168755777522215-6-699-999
Q 000845 1033 KIGVVGRTGSGKTTLISALFR---LVEPTGGKIIIDGLDITTIGLYDLRSNLGIIPQDPTLFSGSVRYNL-D-PLS-QFT 1106 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r---l~~~~~G~I~idG~di~~i~~~~lR~~i~~VpQ~p~LF~gTIr~NL-d-p~~-~~s 1106 (1255)
.|||+|..|||||||+..|+- ..+ ..|++. +|..+......+..+.+++-+.-..+--..-+-|+ | |+. ++.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHH
Q ss_conf 6889840595259976247999996313863000079998892499999999998159993998---6688899999799
Q 000845 1107 DQEIWEVTIPSQVLEKCQLREVIQEKKEGLDSLVVQDGANWSMGQRQLIGLGRVVLRRRQILVL---DEATASIDNATDS 1183 (1255)
Q Consensus 1107 d~ei~~~~~~~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl~lARAlL~~~~ILiL---DEaTS~lD~~te~ 1183 (1255)
.+-.. ++..+.. --.|-+.....-.+-++..-.|+.. +-|+|+.+ |-+-+.. .
T Consensus 86 ~e~~~-------~l~~~D~-----------avlVvda~~Gv~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~-----~ 141 (276)
T d2bv3a2 86 IEVER-------SMRVLDG-----------AIVVFDSSQGVEPQSETVWRQAEKY-KVPRIAFANKMDKTGADL-----W 141 (276)
T ss_dssp TTHHH-------HHHHCCE-----------EEEEEETTTSSCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCH-----H
T ss_pred HHHHH-------HHHHHHH-----------EEEECCCCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCC-----C
T ss_conf 99999-------9996300-----------5773225677446699999999985-999799986445654312-----1
Q ss_pred HHHHHHHHHCCC-CEEEEECC----CCHHHHH--CCEEEEEEC---CEEEEECCHHHHHHC
Q ss_conf 999999987499-38998626----9111311--198999959---879897693388621
Q 000845 1184 ILQNTIRREFAN-CTVITVAH----RIATVMD--CNMVLSMSD---GKLVEYDEPKKLLRR 1234 (1255)
Q Consensus 1184 ~I~~~l~~~~~~-~TvI~IaH----rl~ti~~--~DrI~vl~~---G~ive~g~~~~Ll~~ 1234 (1255)
.+.+.|++.+.. +..+.+-= ...-+.+ ..+.+.-++ ++..+..-|.++...
T Consensus 142 ~~l~ei~~~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~ 202 (276)
T d2bv3a2 142 LVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQ 202 (276)
T ss_dssp HHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHH
T ss_conf 2689999985997178983345787513885056108998558888654002585677777
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.34 E-value=0.73 Score=18.89 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=11.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999926999978999999646
Q 000845 475 KFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.++++|..|+|||||++-+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998889999988408
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.29 E-value=0.83 Score=18.45 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=20.6
Q ss_pred EECCCEEEEECCCCCCHHHHH-HHHHCCC
Q ss_conf 748949999948999489999-9984258
Q 000845 1028 FEGGHKIGVVGRTGSGKTTLI-SALFRLV 1055 (1255)
Q Consensus 1028 I~~Ge~vaIVGrsGsGKSTL~-~~L~rl~ 1055 (1255)
+++|+.+-|+++||||||... ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87599679981799885599999999975
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.26 E-value=0.55 Score=19.83 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 949999948999489999998425889987
Q 000845 1031 GHKIGVVGRTGSGKTTLISALFRLVEPTGG 1060 (1255)
Q Consensus 1031 Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G 1060 (1255)
...+-|+|++|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.14 E-value=0.51 Score=20.11 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.09 E-value=0.32 Score=21.66 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999269999789999996468
Q 000845 476 FAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 476 ~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
..+.||+|+||||+++++..++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.07 E-value=0.47 Score=20.40 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999269999789999996468
Q 000845 475 KFAICGEVGAGKSTLLAAILGEL 497 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~ 497 (1255)
.++|.|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.81 E-value=0.57 Score=19.72 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4999994899948999999842588998789996
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVEPTGGKIIID 1065 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~~~~G~I~id 1065 (1255)
-+|-|.|+-||||||+.+.|..-+ |-..|+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 699998999999899999999996----994583
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.77 E-value=0.54 Score=19.89 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.+||..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.77 E-value=0.86 Score=18.32 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=42.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCCEEE
Q ss_conf 6508968999926999978999999646888789656778889853024687767938999999999---9703999789
Q 000845 469 EVKPAEKFAICGEVGAGKSTLLAAILGELPRLQGMDLKMLPFGDLTQIGERGVNLSGGQKQRIQLAR---ALYQDRDIYL 545 (1255)
Q Consensus 469 ~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G~Dl~~lp~Gd~T~iGe~G~~LSGGQkqRIaLAR---Aly~~~~I~L 545 (1255)
..|++. +..+||+|+|||-|.+.|...+.. .+-....--.|+.|.-|- .-||+-.+.--+. .-.....|++
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~~----~~ir~D~s~~~e~gyvg~-dv~~~i~~l~~~~~~~v~~~~~~iv~ 138 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLDI----PIAISDATSLTEAGYVGE-DVENILTRLLQASDWNVQKAQKGIVF 138 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEE
T ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHCCC----CEEEHHHHHCCCCHHHHH-HHCCCHHHHHHHCHHHHHHHHCCCCH
T ss_conf 678753-244189986378999999864435----331112220144316676-31210344542024589986546301
Q ss_pred EECCCCC
Q ss_conf 8076788
Q 000845 546 LDDPFSA 552 (1255)
Q Consensus 546 LDdp~Sa 552 (1255)
|||.--+
T Consensus 139 lDEieK~ 145 (364)
T d1um8a_ 139 IDEIDKI 145 (364)
T ss_dssp EETGGGC
T ss_pred HHHHHHH
T ss_conf 0166653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.51 E-value=0.58 Score=19.65 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
=|+.++|..|+|||||++.+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.48 E-value=0.6 Score=19.54 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994899948999999842588
Q 000845 1033 KIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
.+-+.||+|+||||++.++.+.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=81.47 E-value=0.61 Score=19.50 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 896899992699997899999964688
Q 000845 472 PAEKFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 472 ~G~l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
+.-.++|+|+.||||||+...|.-.+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 621699988999987999999999979
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.30 E-value=0.54 Score=19.88 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994899948999999842
Q 000845 1033 KIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1033 ~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
||.++|..|+|||||+.-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.26 E-value=0.42 Score=20.81 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 99939986688899999799999999987499389986269111311
Q 000845 1164 RRQILVLDEATASIDNATDSILQNTIRREFANCTVITVAHRIATVMD 1210 (1255)
Q Consensus 1164 ~~~ILiLDEaTS~lD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~ 1210 (1255)
+..++++||.- .+.......+...+......+..|.++++.+.+..
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 72288614344-31214789876411247764478861487665657
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.21 E-value=0.58 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992699997899999964688
Q 000845 475 KFAICGEVGAGKSTLLAAILGELP 498 (1255)
Q Consensus 475 l~~ivG~~GsGKSTLl~~llGe~~ 498 (1255)
.+++.|+.||||||+...|.-++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989999998999999999969
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.20 E-value=0.53 Score=20.00 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999489994899999984258
Q 000845 1034 IGVVGRTGSGKTTLISALFRLV 1055 (1255)
Q Consensus 1034 vaIVGrsGsGKSTL~~~L~rl~ 1055 (1255)
+-+.||+|+||||+++++.+.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.17 E-value=0.5 Score=20.16 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68999926999978999999646
Q 000845 474 EKFAICGEVGAGKSTLLAAILGE 496 (1255)
Q Consensus 474 ~l~~ivG~~GsGKSTLl~~llGe 496 (1255)
.+++|+|+.||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.95 E-value=0.54 Score=19.89 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=31.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHC
Q ss_conf 97489499999489994899999984258899878-999697389999478641
Q 000845 1027 TFEGGHKIGVVGRTGSGKTTLISALFRLVEPTGGK-IIIDGLDITTIGLYDLRS 1079 (1255)
Q Consensus 1027 ~I~~Ge~vaIVGrsGsGKSTL~~~L~rl~~~~~G~-I~idG~di~~i~~~~lR~ 1079 (1255)
-++.|..+-+.|++|+||||+..-+........|. |+||... .++.+.+++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~ 107 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK 107 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH
T ss_conf 8666336999648874889999999998754898899998976--679999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.88 E-value=0.84 Score=18.40 Aligned_cols=28 Identities=39% Similarity=0.558 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4894999994899948999999842588
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
+|.=.|||+|.-.+|||||+..|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.76 E-value=0.63 Score=19.41 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999994899948999999842
Q 000845 1032 HKIGVVGRTGSGKTTLISALFR 1053 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~r 1053 (1255)
=|+.++|.+|+|||||++.+..
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899598999999970
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=80.69 E-value=0.63 Score=19.39 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=25.0
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 146508968999926999978999999646888789
Q 000845 467 NLEVKPAEKFAICGEVGAGKSTLLAAILGELPRLQG 502 (1255)
Q Consensus 467 nl~i~~G~l~~ivG~~GsGKSTLl~~llGe~~~~~G 502 (1255)
|++-++-..++++||+|+||||.+.=|.-.+. .+|
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g 37 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQG 37 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC
T ss_conf 77899997999989999998999999999999-779
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.61 E-value=0.43 Score=20.66 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 489499999489994899999984
Q 000845 1029 EGGHKIGVVGRTGSGKTTLISALF 1052 (1255)
Q Consensus 1029 ~~Ge~vaIVGrsGsGKSTL~~~L~ 1052 (1255)
++.-||.++|++|+|||||++.+.
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 966899999999998899998873
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=80.33 E-value=0.91 Score=18.14 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999994899948999999842588
Q 000845 1032 HKIGVVGRTGSGKTTLISALFRLVE 1056 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~rl~~ 1056 (1255)
-+++|||..-+|||||++.|.+-..
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 2789986675443555425426615
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.25 E-value=0.68 Score=19.14 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCCCCE
Q ss_conf 499999489994899999984--258899878
Q 000845 1032 HKIGVVGRTGSGKTTLISALF--RLVEPTGGK 1061 (1255)
Q Consensus 1032 e~vaIVGrsGsGKSTL~~~L~--rl~~~~~G~ 1061 (1255)
=|+.++|.+|+|||||++-+. .-+.|+-|-
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 89999989999989999988468988872414
|